dmo_2509

CDS [Dmoj\GI11709-cds]; CDS [Dmoj\GI11709-cds]; exon [dmoj_GLEANR_11783:3]; exon [dmoj_GLEANR_11783:2]; intron [Dmoj\GI11709-in]

Name	Class	Family	Strand
(CTG)n	Simple_repeat	Simple_repeat	+

##################################################---------------------------------------------------------------------################################################## TCGATGCCTACTTCGCTGCCTGCGTCAACAAGGATGCGCGTGAGAAAAAGGTGAGCAGCAGCAGCAACAGCAGCAGCACGCAGTAGCAGAACCAACCCTCCCTAACCCCTTCTCCATAGGCCATACACTGCAATTGCTTCGAGTGCGGCAGCTATGGCATCCAGCTGTA ************************************************(((.((.((.((.......)).)).)).)))......................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	M046 female body
.......................GTCAACAAGGATGCGCGTG...............................................................................................................................	19	0	1	1.00	1	1	0
......................................CGTGAGGGAAAGGTGAGAAGC..............................................................................................................	21	3	9	0.11	1	0	1
......................................CGTGAGGAAAAGGTGAAAAGC..............................................................................................................	21	3	13	0.08	1	1	0
.....................................................AGCAGCAGCAGCAACAGCAGCA..............................................................................................	22	0	20	0.05	1	0	1

AGCTACGGATGAAGCGACGGACGCAGTTGTTCCTACGCGCACTCTTTTTCCACTCGTCGTCGTCGTTGTCGTCGTCGTGCGTCATCGTCTTGGTTGGGAGGGATTGGGGAAGAGGTATCCGGTATGTGACGTTAACGAAGCTCACGCCGTCGATACCGTAGGTCGACAT ************************************************(((.((.((.((.......)).)).)).)))......................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V056 head	V041 embryo	V110 male body
........................................................................................CTTGGTTGGGAGGGATTGGGG............................................................	21	0	1	1.00	1	1	0	0	0
.................................................................................................GTGTGATTGGGGAAGAGGT.....................................................	19	2	1	1.00	1	0	1	0	0
......................................................................................GTCTTGGTTGGGATAGATTGGG.............................................................	22	2	1	1.00	1	0	0	1	0
.................................................................................................GAGTGCTTGGGGAAGAGGTG....................................................	20	3	6	0.17	1	0	0	0	1
...............................................................................................GGGATGGATTGGGGGAGA........................................................	18	2	12	0.08	1	1	0	0	0
....................................................................................................GGATTGCGGAAGAAGTAGC..................................................	19	3	12	0.08	1	1	0	0	0
...................................................................................................GTGCTTGGGGAAGAGGT.....................................................	17	2	13	0.08	1	0	1	0	0
..................................................................................................AGGGGTTGGGGAAGAGGA.....................................................	18	2	16	0.06	1	1	0	0	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6680:16308826-16308994 -	dmo_2509	TCGATGC----------------CTACTTC----GCTGCCTG--CGTCAACAAG-GATGCGCGTGAGAAAAAGGTGAGCAGCAGCAGCAACAGCAGCAG---------------------------------------------------------------CA-----------------------------------------------CGCAGTAGCAGAACC---------------------AACCCTCCCT--AACCCCTTCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAGGCCATACACTGCAATTGCTTCG-----------------AGTGCGGC-------------A---------------------------------------------------------------------------------------------------------GCTATGGC---------ATCCAGCTG-----------TA
droVir3	scaffold_13049:21787069-21787251 -		TCGATGC----------------CTACTTT----GCCGCCTG--TGTCAACAAG-GATGCGCGTTTGAAAA-----------------AGGTAAG---------------------------------------------CGGGCA------------------G---CAGTA--------------------------------------GGCAAT-------GC---------------------C-----------------------------------------------------------------------------------------------------------AAGGCC-----------------------------------TCACCCATCCTCCACCCCTACCACCTTTTTTGCGTTCCACCCTGTCCATAGGCCATACACTGCAATTGCTTCG-----------------AGTGCGGC-------------A---------------------------------------------------------------------------------------------------------GCTATGGC---------ATCCAGCTG-----------TA
droGri2	scaffold_15245:15511947-15512084 -		TCTACAG----------------CAACACC----AACACCA---------------------------------------------------ACA---------------------------------------------CCAACAGCATCAACAACAGCAGCAGCAGCAGCAACAAC---------------------------------------------------------------------A------------------------------------------------------TTTAGGTTTAACGC---------------------------CCGCGCTGCACCAC---CACCACCATCATC-----------------------------------------------------------------------------------------ATCATCA---------------------------------------------------------------CC---------------ACCAGC---------------------------------AGCTGTCGCTG----------------------------------CACCAG-----------AA
droWil2	scf2_1100000004822:2705428-2705549 +		ATAATAC----------------CG----------CTGCCAG--CAGCAACAGG----------------------------------AACGGCAA------------------------------------------------------------------CAGCAACAGCAACAGC-----------AATTGTTGGTGGT------------------GGAAGC---------------------------------------------------------------------------------------------------------------------------AGCACCACCACC-----------------------------------ACACCCA---------------------------------------CACAGACCTCA--------------------------------------------------------------------------------------------------------------------------------------------------CCGCCA----------------------------CAG--TTGACACATGTGCG
dp5	3:18859911-18860032 +		AGCAGCAGCA------------------G-------C---------------------------------------------------AACAGCAGCAG---------------------------------------------------------------CAA---CAGCAGCAGC---------------------------------------------AGC---------------------CATTCTCCCCACAGCCACGGGGCCAGCGGCCAGACGGGCAGCAGCAACA------------------GC---------AG--------------------------------------------------------------------------------------------------------------------------------------CTCCAGCGG-----------------CAGCGGC-------------A---------------------------------------------------------------------------------------------------------GCA------GC------AG-CAG--C-----------TG
droPer2	scaffold_9:387651-387730 -		AGCAGCAGCA------------------G-------C---------------------------------------------------AACAACAGCAG---------------------------------------------------------------CAA---CAGCAGCAGT---------------------------------------------------------------------C------------------------------------------------------GATGGGTACACAGCAT-----------------------------------------------------------------------------------------------------------------------------------------------TTC-----------------------GTGCAGC-------------A---------------------------------------------------------------------------------------------------------GC-ATTGC---------GCCCAG--T-----------TG
droAna3	scaffold_13088:432262-432364 -		AACAGCAGCA------------------G-------C---------------------------------------------------AACAGCAGCAG---------------------------------------------------------------CAG---CAGAA----C---AGTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT---------------------------------------------------------------------------------------------------------AACTAGTCCATATG-------------------------------------AGATCTACCACAGCACGCCCCAGAAGCCACAACA---------GCA---GC---------AG-CAGCTC-----------TC
droBip1	scf7180000396691:1707145-1707277 +		AGCAGCAGCA------------------G-------C---------------------------------------------------AACAACAGCAG---------------------------------------------------------------CAGGCACAGCAACAGC---------------------------------------------AGCAGCGTGCTTTGCAGCAATCTGCATCACCCCCACAGC---------------------------------------------------------------------------------------------AG---------------------CAG--------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------------------------AGCAGACGCCACAACAGCAGCA---GCCACAGCACGTTCCC-ATGCAGCCC-----------CA
droKik1	scf7180000302441:724425-724522 -		AGGAGGAGCA------------------G-------G---------------------------------------------------AGGAGGAGGAG---------------------------------------------------------------GAGGAGGAGCAACACC-----------AGCAGC---------AG---CAGGCAA--GGAGGTTC---------------------GCTACGCCCC--ATTCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGCATCG------------------------------------------------------------------------------------------------------------------------------------------CC------AA-CGC--A-----------CT
droFic1	scf7180000454106:2284180-2284306 +		GCAGCTC----------------GCTCTTCTCGAACCACCTG--GCTCTGCCGG-GAACCGCAGCGGTGGC-----------------AGCGGCGGCGG---------------------------------------------------------------CAG---CAGCAGCGGC---------------------------------------------GGC---------------------CAA----CTCGC--------------------GACAGGT------------------------------------------------------GG-----------------------------------------------------------------------------------------------------------------CCGCAACGGCAGCGG-----------------CTGCGGC-------------G---------------------------------------------------------------------------------------------------------GCCGTG-------------------------------GC
droEle1	scf7180000490728:308971-309147 -		CCACCGC----------------CGATCCC----GTGGCAG-TGCATCAGCAATTGATGAAC--------------------------CACTGGATACG---CA-----------------------ATGCAGCCATTTACCACCAGCAGCAACAACAGCAACAGCAGCAGCAACATC---------------------------------------------ACC------------------------------------------------------------------------------------------------------------------------------------ATCATGGTCATCATG--------------------------------------------------------------------------------------------------------------------------------------------------------CTCATCCCC---------------ATCATC---------------------------------CACATGCGCATC---CCCATCATGTGCG---TCCCT------ATCCCG--C-----------TG
droRho1	scf7180000779479:294840-294951 -		AGCTGCAGCA------------------G-------C---------------------------------------------------ACCAGCAGCAA---------------------------------------------------------------CAGGCGGCCCAG---GCCCAGTTCCCCAACTTCTCCAGCCTGAT---------------------------------------------------------------------------GGCCCTGCAGCAGCAGGTGCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGGT-------------G---------------------------------------------------------------------------------------------------------CCCAGGAC---------CTCTCGCTG-----------GC
droBia1	scf7180000302136:1431277-1431454 +		AGGCCAG----------------TTGG--------------------------------------------------------------------------------------CTGGCCTATGACCTGAGCAGCGGTTCAGCGGCAGCAGCAGCGGCGG---CAG---CAGCGGCAGC---------------------------------------------------------------------C-------TCGC---------------------------------------------------------------------------------------------ACCAC------------------------------------------------------CACCACCACCTCTTCG---------------------------------------------------------------------------------------------GCCACTTT-----CCCTATCCGGGCAGCCATCCTCCGGCCCAGCTGTACGAGCA----------------------CTAC---GCCAGCACTACGGATCCC---------ATCATGCGG-----------AA
droTak1	scf7180000415352:154222-154366 -		CCCGCAT----------------CATA--------------------------------------------------------------------------------------CACACCAGCAACAACAGCAGCAA--CACCACCAGCAGCACCAACAGCAACAGCAACAGCAGCACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAGC------------------A-------------------------------------------------------------------------------------------------------------GCAGC-------------AACATGCCGCCCAGCTGGCCCACACA-------------------------------------CTTTCTTC----------------GGCCGCCGCT---------GCTGC------------TG-CTGCCG-----------GC
droEug1	scf7180000409230:544766-544876 -		AGCAGCAGCA------------------G-------C---------------------------------------------------AGCAGCAGCAGCAACA-------------------TTCC--------------------------------------GATGAGCAACACC-----------AGTTCCTGGTGCCCAAT---------------------------------------------------------------------------CAGCCAGGGGCTACA------------------GT-----------------------------------------------------------------------------------------------------------------------------------------CA------CTACAGTTG-----------------CTCCAAC-------------A---------------------------------------------------------------------------------------------------------GCT------AA-------TCC--TCA-----------TA
dm3	chr3R:8127277-8127404 +		TCAATGCAAATCAATGCCTGCAGCAACATC----ACCA------------------------------------------------------------G-----CGCATGTTGCTCG-----------------------CGGGCA------------------G---CAGCA------------------------------------------------------------------------------------------------------------------------ACA------------------GC---------AGCAGCAACAACAGCAGC------------AGC------------------AACA-----------------------------------------------------------------------------------GCAACGG------------------CGCAGC-------AGCAATG---C-----CCTC----CTCA------------------------------------------------------------------------------------------------------TC-CTCGT-----------CT
droSim2	2l:8934823-8934947 +		AGCAGCAGCA------------------G-------C---------------------------------------------------AACAACAGCAG---------------------------------------------------------------CAG---CAGCAACAGCAACAGGTC----------------------------------------------------------------------------------------------------------------------------GCCGGCATTCCTTCC--------------CAGC------------AGC------------------AACAACAGCAG--------------------------------------------------------------------------CC-----------------------------------------------------------------AAACG-------------------------------------ATGTCTACCTCAG---------------T---CAGCAGCA---GCAACAGCAAC-------TCCAGC-------------CG
droSec2	scaffold_0:16602591-16602724 +		CTGAGTGGCA------------------G-------C---------------------------------------------------AACAGCAGCAGCAATA-------------------ATGC--------------------------------------GACCAGCAATGCC-----------GCTG-CAGCAGCAGCAGCAGCACACAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------CATGGCTC--------------------------------------------------------------------------AAAAC---------------GGCAGCAACTGCAGTGGCCATGCGAATGCAGC-------------A---------------------------------------------------------------------------------------------------------ATTGGAAC---------A-------------------TC
droYak3	X:18186523-18186681 +		TGACGAC-----------------G---A-------C----------------------AAC--------------------------AACGGCGGCGG---CG-----------------------GAGCAGCCGTGGAGCAGCAGCAGCAGCGG------------CAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCAGCAGTCGTGCCATACAACCAGCCACTACCTC---------------------------------------------------------------------------------------------------------AGCCAGTTCATCCAC---------------ATCCTC---------------------------------CAGTGCCAGTTC---GCCAGCGGCAGCG---GTCGTTT---CTGCCATCGG-----------TA
droEre2	scaffold_4784:3526944-3527100 +		TCAGCAG----------------CAACATC----ACGGCCA-TCC--------------------------------------------GTTGCAT--C-----CGCATCATACACA-----------------------CCAGCAACAGCAACAACAGCAGCAG---CAGCAGCAGC---------------------------------------------AGC---------------------C--------------------------------------------------------------GCCGC-------------------------------------AACAC------CACCAGCAGCAGCAGCA-----------------------------------------------------------------------------------GCAACAG-----------------CAGCA-CGCACAGCAGCAGCA---------------------------------------------------------------------------------------------------------GCAGCAGC---------ATCATGCCG-----------CC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

TCGATGC----------------CTACTTC----GCTGCCTG--CGTCAACAAG-GATGCGCGTGAGAAAAAGGTGAGCAGCAGCAGCAACAGCAGCAG---------------------------------------------------------------CA-----------------------------------------------CGCAGTAGCAGAACC---------------------AACCCTCCCT--AACCCCTTCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAGGCCATACACTGCAATTGCTTCG-----------------AGTGCGGC-------------A---------------------------------------------------------------------------------------------------------GCTATGGC---------ATCCAGCTG-----------TA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................GTCAACAAG-GATGCGCGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
............................................................................AGCAGCAGCAGCAACAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0

droVir3

TCGATGC----------------CTACTTT----GCCGCCTG--TGTCAACAAG-GATGCGCGTTTGAAAA-----------------AGGTAAG---------------------------------------------CGGGCA------------------G---CAGTA--------------------------------------GGCAAT-------GC---------------------C-----------------------------------------------------------------------------------------------------------AAGGCC-----------------------------------TCACCCATCCTCCACCCCTACCACCTTTTTTGCGTTCCACCCTGTCCATAGGCCATACACTGCAATTGCTTCG-----------------AGTGCGGC-------------A---------------------------------------------------------------------------------------------------------GCTATGGC---------ATCCAGCTG-----------TA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGCTTCG-----------------AGTGCGGC-------------A---------------------------------------------------------------------------------------------------------GC.....................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGCAATTGCTTCG-----------------AGTGC.................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTCG-----------------AGTGCGGC-------------A---------------------------------------------------------------------------------------------------------GCTATGGC---------......................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AACAAG-GATGCGCGTTTGAAAA-----------------AG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCGGC-------------A---------------------------------------------------------------------------------------------------------GCTATGGC---------ATC...................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TGC----------------CTACTTT----GCCGCCTG--TGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CTACTTT----GCCGCCTG--TGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

TCTACAG----------------CAACACC----AACACCA---------------------------------------------------ACA---------------------------------------------CCAACAGCATCAACAACAGCAGCAGCAGCAGCAACAAC---------------------------------------------------------------------A------------------------------------------------------TTTAGGTTTAACGC---------------------------CCGCGCTGCACCAC---CACCACCATCATC-----------------------------------------------------------------------------------------ATCATCA---------------------------------------------------------------CC---------------ACCAGC---------------------------------AGCTGTCGCTG----------------------------------CACCAG-----------AA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................................................................................................................................................ACAGCAGCAGCAGCAGCAACAAC---------------------------------------------------------------------A------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	2	0
.............................C----AACACCA---------------------------------------------------ACA---------------------------------------------CCAACAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	14	0.07	1	1	0

droWil2

ATAATAC----------------CG----------CTGCCAG--CAGCAACAGG----------------------------------AACGGCAA------------------------------------------------------------------CAGCAACAGCAACAGC-----------AATTGTTGGTGGT------------------GGAAGC---------------------------------------------------------------------------------------------------------------------------AGCACCACCACC-----------------------------------ACACCCA---------------------------------------CACAGACCTCA--------------------------------------------------------------------------------------------------------------------------------------------------CCGCCA----------------------------CAG--TTGACACATGTGCG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

AGCAGCAGCA------------------G-------C---------------------------------------------------AACAGCAGCAG---------------------------------------------------------------CAA---CAGCAGCAGC---------------------------------------------AGC---------------------CATTCTCCCCACAGCCACGGGGCCAGCGGCCAGACGGGCAGCAGCAACA------------------GC---------AG--------------------------------------------------------------------------------------------------------------------------------------CTCCAGCGG-----------------CAGCGGC-------------A---------------------------------------------------------------------------------------------------------GCA------GC------AG-CAG--C-----------TG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................AG---------------------------------------------------------------CAA---CAGCAGCAGC---------------------------------------------AGC---------------------CATTCT...............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.GCAGCAGCA------------------G-------C---------------------------------------------------AACAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	2	0	0	0	0	0
AGCAGCAGCA------------------G-------C---------------------------------------------------AACAGCAGCAG---------------------------------------------------------------CA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.........A------------------G-------C---------------------------------------------------AACAGCAGCAG---------------------------------------------------------------CAA---CAGCAGCAGC---------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1
.........................................................................................ACAGCAGCAG---------------------------------------------------------------CAA---CAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0
........CA------------------G-------C---------------------------------------------------AACAGCAGCAG---------------------------------------------------------------CAA---CAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.......GCA------------------G-------C---------------------------------------------------AACAGCAGCAG---------------------------------------------------------------CAA---CAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
......AGCA------------------G-------C---------------------------------------------------AACAGCAGCAG---------------------------------------------------------------CAA---CAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0
AGCAGCAGCA------------------G-------C---------------------------------------------------AACAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0
............................G-------C---------------------------------------------------AACAGCAGCAG---------------------------------------------------------------CAA---CAGCAGCAGC---------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1

droPer2

AGCAGCAGCA------------------G-------C---------------------------------------------------AACAACAGCAG---------------------------------------------------------------CAA---CAGCAGCAGT---------------------------------------------------------------------C------------------------------------------------------GATGGGTACACAGCAT-----------------------------------------------------------------------------------------------------------------------------------------------TTC-----------------------GTGCAGC-------------A---------------------------------------------------------------------------------------------------------GC-ATTGC---------GCCCAG--T-----------TG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................G---------------------------------------------------------------CAA---CAGCAGCAGT---------------------------------------------------------------------C------------------------------------------------------GATGGGG.......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.................................................................................................AG---------------------------------------------------------------CAA---CAGCAGCAGT---------------------------------------------------------------------C------------------------------------------------------GATGGGT.......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
...............................................................................................................................................................................AGT---------------------------------------------------------------------C------------------------------------------------------GATGGGTACACAGC................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0

droAna3

AACAGCAGCA------------------G-------C---------------------------------------------------AACAGCAGCAG---------------------------------------------------------------CAG---CAGAA----C---AGTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT---------------------------------------------------------------------------------------------------------AACTAGTCCATATG-------------------------------------AGATCTACCACAGCACGCCCCAGAAGCCACAACA---------GCA---GC---------AG-CAGCTC-----------TC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......GCA------------------G-------C---------------------------------------------------AACAGCAGCAG---------------------------------------------------------------CAG---CAGAA----C---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0
........................................................................................AACAGCAGCAG---------------------------------------------------------------CAG---CAGAA----C---AGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.........................................................................................ACAGCAGCAG---------------------------------------------------------------CAG---CAGAA----C---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	1
........CA------------------G-------C---------------------------------------------------AACAGCAGCAG---------------------------------------------------------------CAG---CAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	16	0.06	1	0	0	0	0	1	0
....................................C---------------------------------------------------AACAGCAGCAG---------------------------------------------------------------CAG---CAGAA----...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	18	0.06	1	1	0	0	0	0	0

droBip1

AGCAGCAGCA------------------G-------C---------------------------------------------------AACAACAGCAG---------------------------------------------------------------CAGGCACAGCAACAGC---------------------------------------------AGCAGCGTGCTTTGCAGCAATCTGCATCACCCCCACAGC---------------------------------------------------------------------------------------------AG---------------------CAG--------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------------------------AGCAGACGCCACAACAGCAGCA---GCCACAGCACGTTCCC-ATGCAGCCC-----------CA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGGAGGAGCA------------------G-------G---------------------------------------------------AGGAGGAGGAG---------------------------------------------------------------GAGGAGGAGCAACACC-----------AGCAGC---------AG---CAGGCAA--GGAGGTTC---------------------GCTACGCCCC--ATTCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGCATCG------------------------------------------------------------------------------------------------------------------------------------------CC------AA-CGC--A-----------CT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCAGCTC----------------GCTCTTCTCGAACCACCTG--GCTCTGCCGG-GAACCGCAGCGGTGGC-----------------AGCGGCGGCGG---------------------------------------------------------------CAG---CAGCAGCGGC---------------------------------------------GGC---------------------CAA----CTCGC--------------------GACAGGT------------------------------------------------------GG-----------------------------------------------------------------------------------------------------------------CCGCAACGGCAGCGG-----------------CTGCGGC-------------G---------------------------------------------------------------------------------------------------------GCCGTG-------------------------------GC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCACCGC----------------CGATCCC----GTGGCAG-TGCATCAGCAATTGATGAAC--------------------------CACTGGATACG---CA-----------------------ATGCAGCCATTTACCACCAGCAGCAACAACAGCAACAGCAGCAGCAACATC---------------------------------------------ACC------------------------------------------------------------------------------------------------------------------------------------ATCATGGTCATCATG--------------------------------------------------------------------------------------------------------------------------------------------------------CTCATCCCC---------------ATCATC---------------------------------CACATGCGCATC---CCCATCATGTGCG---TCCCT------ATCCCG--C-----------TG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGCTGCAGCA------------------G-------C---------------------------------------------------ACCAGCAGCAA---------------------------------------------------------------CAGGCGGCCCAG---GCCCAGTTCCCCAACTTCTCCAGCCTGAT---------------------------------------------------------------------------GGCCCTGCAGCAGCAGGTGCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGGT-------------G---------------------------------------------------------------------------------------------------------CCCAGGAC---------CTCTCGCTG-----------GC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGGCCAG----------------TTGG--------------------------------------------------------------------------------------CTGGCCTATGACCTGAGCAGCGGTTCAGCGGCAGCAGCAGCGGCGG---CAG---CAGCGGCAGC---------------------------------------------------------------------C-------TCGC---------------------------------------------------------------------------------------------ACCAC------------------------------------------------------CACCACCACCTCTTCG---------------------------------------------------------------------------------------------GCCACTTT-----CCCTATCCGGGCAGCCATCCTCCGGCCCAGCTGTACGAGCA----------------------CTAC---GCCAGCACTACGGATCCC---------ATCATGCGG-----------AA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCCGCAT----------------CATA--------------------------------------------------------------------------------------CACACCAGCAACAACAGCAGCAA--CACCACCAGCAGCACCAACAGCAACAGCAACAGCAGCACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAGC------------------A-------------------------------------------------------------------------------------------------------------GCAGC-------------AACATGCCGCCCAGCTGGCCCACACA-------------------------------------CTTTCTTC----------------GGCCGCCGCT---------GCTGC------------TG-CTGCCG-----------GC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGCAGCAGCA------------------G-------C---------------------------------------------------AGCAGCAGCAGCAACA-------------------TTCC--------------------------------------GATGAGCAACACC-----------AGTTCCTGGTGCCCAAT---------------------------------------------------------------------------CAGCCAGGGGCTACA------------------GT-----------------------------------------------------------------------------------------------------------------------------------------CA------CTACAGTTG-----------------CTCCAAC-------------A---------------------------------------------------------------------------------------------------------GCT------AA-------TCC--TCA-----------TA	Size	Hit Count	Total Norm	Total
No Reads

dm3

TCAATGCAAATCAATGCCTGCAGCAACATC----ACCA------------------------------------------------------------G-----CGCATGTTGCTCG-----------------------CGGGCA------------------G---CAGCA------------------------------------------------------------------------------------------------------------------------ACA------------------GC---------AGCAGCAACAACAGCAGC------------AGC------------------AACA-----------------------------------------------------------------------------------GCAACGG------------------CGCAGC-------AGCAATG---C-----CCTC----CTCA------------------------------------------------------------------------------------------------------TC-CTCGT-----------CT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................................CG-----------------------CGGGCA------------------G---CAGCA------------------------------------------------------------------------------------------------------------------------ACA------------------GC---------AGCAG..................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------------------------GCAACGG------------------CGCAGC-------AGCAAT.................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................A------------------------------------------------------------G-----CGCATGTTGCTCG-----------------------CGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................GCAGC------------AGC------------------AACA-----------------------------------------------------------------------------------GCAACGG------------------CGC.................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................AGC------------------AACA-----------------------------------------------------------------------------------GCAACGG------------------CGCAGC-------A......................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ACATC----ACCA------------------------------------------------------------G-----CGCATGTTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................................................................................................................................................AACAACAGCAGC------------AGC------------------AACA-----------------------------------------------------------------------------------.............................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GC---------AGCAGCAACAACAGCAGC------------A........................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................A------------------G---CAGCA------------------------------------------------------------------------------------------------------------------------ACA------------------GC---------AGCAGCAAC..............................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................CAACAGCAGC------------AGC------------------AACA-----------------------------------------------------------------------------------G............................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................C---------AGCAGCAACAACAGCAGC------------AG.......................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................CAGCAGC------------AGC------------------AACA-----------------------------------------------------------------------------------GCA..........................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGC------------AGC------------------....................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGCAGCAGCA------------------G-------C---------------------------------------------------AACAACAGCAG---------------------------------------------------------------CAG---CAGCAACAGCAACAGGTC----------------------------------------------------------------------------------------------------------------------------GCCGGCATTCCTTCC--------------CAGC------------AGC------------------AACAACAGCAG--------------------------------------------------------------------------CC-----------------------------------------------------------------AAACG-------------------------------------ATGTCTACCTCAG---------------T---CAGCAGCA---GCAACAGCAAC-------TCCAGC-------------CG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................................................ACAGGTC----------------------------------------------------------------------------------------------------------------------------GCCGGCATTCCTTCC--------------CAGC------------.........................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................ACAGCAG--------------------------------------------------------------------------CC-----------------------------------------------------------------AAACG-------------------------------------ATGT..............................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................GCAACAGGTC----------------------------------------------------------------------------------------------------------------------------GCCGGCATTCC...........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTCAG---------------T---CAGCAGCA---GCAAC..................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................AACAGGTC----------------------------------------------------------------------------------------------------------------------------GCCGGCATTCCTTCC--------------CAGC------------.........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................CAACAGCAACAGGTC----------------------------------------------------------------------------------------------------------------------------GCCGGCATTCC...........................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GCAACAGCAACAGGTC----------------------------------------------------------------------------------------------------------------------------GCCGGC................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................C--------------CAGC------------AGC------------------AACAACAGCAG--------------------------------------------------------------------------C..............................................................................................................................................................................................	20	10	0.80	8	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................G---CAGCAACAGCAACAGGTC----------------------------------------------------------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA---GCAACAGCAAC-------TC...................	21	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................AACAGCAG---------------------------------------------------------------CAG---CAGCAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........CA------------------G-------C---------------------------------------------------AACAACAGCAG---------------------------------------------------------------CAG---CAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................C---------------------------------------------------AACAACAGCAG---------------------------------------------------------------CAG---CAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..CAGCAGCA------------------G-------C---------------------------------------------------AACAACAGCAG---------------------------------------------------------------CAG---C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGCAGCA------------------G-------C---------------------------------------------------AACAACAGCAG---------------------------------------------------------------CAG---CAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...AGCAGCA------------------G-------C---------------------------------------------------AACAACAGCAG---------------------------------------------------------------CA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

CTGAGTGGCA------------------G-------C---------------------------------------------------AACAGCAGCAGCAATA-------------------ATGC--------------------------------------GACCAGCAATGCC-----------GCTG-CAGCAGCAGCAGCAGCACACAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------CATGGCTC--------------------------------------------------------------------------AAAAC---------------GGCAGCAACTGCAGTGGCCATGCGAATGCAGC-------------A---------------------------------------------------------------------------------------------------------ATTGGAAC---------A-------------------TC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

TGACGAC-----------------G---A-------C----------------------AAC--------------------------AACGGCGGCGG---CG-----------------------GAGCAGCCGTGGAGCAGCAGCAGCAGCGG------------CAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCAGCAGTCGTGCCATACAACCAGCCACTACCTC---------------------------------------------------------------------------------------------------------AGCCAGTTCATCCAC---------------ATCCTC---------------------------------CAGTGCCAGTTC---GCCAGCGGCAGCG---GTCGTTT---CTGCCATCGG-----------TA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................GCAGCAGCAGCAGCGG------------CAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGC..............................................................................................................................................................................................................................................................................	23	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................GTGGAGCAGCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................GCAGCAGCGG------------CAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCAGC...........................................................................................................................................................................................................................................................................	20	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................GCAGCAGCAGCGG------------CAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCA.............................................................................................................................................................................................................................................................................	21	16	0.06	1	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................AGCAGCAGCGG------------CAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCA.............................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................GTGGAGCAGCAGCAGCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

TCAGCAG----------------CAACATC----ACGGCCA-TCC--------------------------------------------GTTGCAT--C-----CGCATCATACACA-----------------------CCAGCAACAGCAACAACAGCAGCAG---CAGCAGCAGC---------------------------------------------AGC---------------------C--------------------------------------------------------------GCCGC-------------------------------------AACAC------CACCAGCAGCAGCAGCA-----------------------------------------------------------------------------------GCAACAG-----------------CAGCA-CGCACAGCAGCAGCA---------------------------------------------------------------------------------------------------------GCAGCAGC---------ATCATGCCG-----------CC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................AACATC----ACGGCCA-TCC--------------------------------------------GTTGCAT--C-----CG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------------------------GCAACAG-----------------CAGCA-CGCACAGCAGCAGC.................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAG-----------------CAGCA-CGCACAG........................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.............................C----ACGGCCA-TCC--------------------------------------------GTTGCAT--C-----CGCATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------CAGCA-CGCACAGCAGCAGCA---------------------------------------------------------------------------------------------------------GCA....................................	24	1	1.00	1	0	0	0	0	1	0	0
.........................ACATC----ACGGCCA-TCC--------------------------------------------GTTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG-----------------CAGCA-CGCACAGCAGCAGCA---------------------------------------------------------------------------------------------------------GC.....................................	27	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................CGC-------------------------------------AACAC------CACCAGCAGCAGC....................................................................................................................................................................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0	0
..........................................................................................................................................................AACAGCAGCAG---CAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	3	0
...............................................................................................................................................GCAACAGCAACAACAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	1	1	0	0	0	0	0
......................................................................................................................................................CAACAACAGCAGCAG---CAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	2	0
...........................................................................................................................................................................................................................................................................................................................................................................CACCAGCAGCAGCAGCA-----------------------------------------------------------------------------------GCAACAG-----------------CA...................................................................................................................................................................	26	13	0.08	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................GCAGCA-----------------------------------------------------------------------------------GCAACAG-----------------CAGCA-C..............................................................................................................................................................	19	19	0.05	1	1	0	0	0	0	0	0
....................................................................................................................................................AGCAACAACAGCAGCAG---CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA-----------------------------------------------------------------------------------GCAACAG-----------------CAGC.................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................C------CACCAGCAGCAGCAGCA-----------------------------------------------------------------------------------GCA..........................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
.................................................................................................................................................AACAGCAACAACAGCAGCAG---CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................C------CACCAGCAGCAGCAGCA-----------------------------------------------------------------------------------GC...........................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA-----------------------------------------------------------------------------------GCAACAG-----------------CA...................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0	0
.......................................................................................................................................................AACAACAGCAGCAG---CAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0
.................................................................................................................................................AACAGCAACAACAGCAGCAG---C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0
........................................................................................................................................................ACAACAGCAGCAG---CAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA-----------------------------------------------------------------------------------GCAACAG-----------------CAGCA-...............................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCAGCAGCA---------------------------------------------------------------------------------------------------------GCAGCAGC---------......................	21	20	0.05	1	0	0	0	0	0	1	0
.......................................................................................................................................................AACAACAGCAGCAG---CAGCAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0
..............................................................................................................................................AGCAACAGCAACAACAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
....................................................................................................................................................AGCAACAACAGCAGCAG---CAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0
.....................................................................................................................................................GCAACAACAGCAGCAG---CAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................CAC------CACCAGCAGCAGCAGC.................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0

dmo_2509

scaffold_6680:16308876-16308944 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-7.1	-7.1