ID:

dmo_2507

 Coordinate:

scaffold_6680:15616827-15616977 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.2 -23.2 -23.2

Flybase annnotation

exon [dmoj_GLEANR_13494:3]; CDS [Dmoj\GI13580-cds]; intron [Dmoj\GI13580-in]

Repeatable elements

NameClassFamilyStrand
(CATA)nSimple_repeatSimple_repeat+
mature
  1. scaffold_6359:2354116-2354140 -
  2. scaffold_6473:11673774-11673798 -
  3. scaffold_6473:14396173-14396197 -
  4. scaffold_6473:16356989-16357013 +
  5. scaffold_6482:283408-283432 -
  6. scaffold_6482:1321019-1321043 +
  7. scaffold_6496:7006961-7006985 -
  8. scaffold_6500:20981336-20981360 -
  9. scaffold_6540:23157382-23157406 -
  10. scaffold_6540:30324264-30324288 +
  11. scaffold_6680:13669697-13669721 +
  12. dmo_2507  scaffold_6680:15616882-15616906 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACTTCCTGCGTGACAAACGGCGGCAACAGCTGCGCCTTGCACCTGCTCACTGAAGTGTGAGGCGGACAGACAACAAAAAATTGCACTTGCATACATACATATACACATACATACATATATACATACATATATAAATATATACATATATGCTCATCTGAATATATTGTTAATTTTGCAACTCTTTTTCTGTCTACTTTGCAGCTGTTCGCTTTGGTCGCGTGCCGAAGCGCGAAAAGGCGCGTATTTTGGCC
**************************************************.....(((((((.(((((((....((((..(((((.......(((...(((((..((......(((((((...((.((((....)))).)).)))))))......))..))))))))......)))))...))))))))))).))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V056
head
 V110
male body
...........GACAAACGGCGGCAACAGCTGCGCCTTG.................................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0
....................................................................................................................................................................................................TGCGCCTGTTCGCTTTGGTCGCG................................ 23 2 1 1.00 1 0 0 1 0
......................................................................................................................................................................................................................................GAAAAGGCGCGTATTTTGGC. 20 0 1 1.00 1 0 0 0 1
........................................................................................................................................................................................................GCTGTTCGCTTTGGTCGCGT............................... 20 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................................................GCGAAAAGGCGCGTATTTTGGCC 23 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................................GGTAGCGTGCAGAAGCGCGA................... 20 2 3 0.33 1 1 0 0 0
.........................................................................................................CATACATACATATATACATACATAT......................................................................................................................... 25 0 12 0.08 1 1 0 0 0
..............................................................................................................................................................................................CTACTTTGCAGCTGAAGGCT......................................... 20 3 17 0.06 1 1 0 0 0
............................................................................................................ACATACATATATACATACATA.......................................................................................................................... 21 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

TGAAGGACGCACTGTTTGCCGCCGTTGTCGACGCGGAACGTGGACGAGTGACTTCACACTCCGCCTGTCTGTTGTTTTTTAACGTGAACGTATGTATGTATATGTGTATGTATGTATATATGTATGTATATATTTATATATGTATATACGAGTAGACTTATATAACAATTAAAACGTTGAGAAAAAGACAGATGAAACGTCGACAAGCGAAACCAGCGCACGGCTTCGCGCTTTTCCGCGCATAAAACCGG
**************************************************.....(((((((.(((((((....((((..(((((.......(((...(((((..((......(((((((...((.((((....)))).)).)))))))......))..))))))))......)))))...))))))))))).))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V049
head
..............................................................................................................................................................................................................GCCAAACCGGCGCACGGCAT......................... 20 3 4 0.25 1 1
.............................................................................................................................................................................................................ACCGAAACAAGCGCACGGCAT......................... 21 3 5 0.20 1 1
.............................................................................................................................................................................................................ACCGTAACCGGCGCACGGCTT......................... 21 3 5 0.20 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6680:15616777-15617027 + dmo_2507 AC-------------------------------TTCCTGCGTG--ACAAA-C-G-----------------------------GCGGCAACAGCTGCG-------------------------------CCTTGCACCTGCT------------------CACTGAAGTGTGAG------G------------------CGG--ACAGACAACAAAAAATTGCACTTGCATA------------CATACA------------TATACA----------------CATACATACATATATAC-ATACATATATAAATATATACATATATGCTCATCTGAATATATTGTTAA----------TTTTGCAA---------------------------------------CTCT-------TTTTCTGTCTACTTTGCAGCTGTTCGCTTTGGTCGCGTGCCGAAGCGCGA-AAAGGCGCGTATTTTGGCC
droVir3 scaffold_13049:21220373-21220591 + dvi_20882 GC-------------------------------TTCCTGCGTG--ACAAA-C-------------------------------AGAACAACAGCTGCT-------------------------------CCTTGCACCTGTT--CGCC----------------GAAGTGTGAC-------------------------------------------------ACCTTTGTA------------TATACA--------------------------TAAGCT--CCTACATATATATATAT-ATATATATA-AGACTT------------GTAGCTGTGCGTGTTATTAA----------TTTGCCCCCTCT--------------------------------TC-TGCT-------TCTTTCCTC-CCGTTGCAGCTGTGCGCTTTGGTCGCGTGCCCAAGCGAGA-GAAGGCGCGCATTTTGGCC
droGri2 scaffold_14398:17942-18135 + AC-------------------------------TCGCTATGCGGGTCAT--CGTCAGCTGTGCAGCTT-------TG-------------CA-----G-------------------------------CTTTGCACCTGTT--GTT---------------------------------G------------------CT-----------------------G-------T-----TTTTTTCTCTTC------------------T------------------------------------------------T-------------------TCTTGCATTAA------TTT-------------------GTACATGTTGCAAAAACAATTATTAAGTCCG-CAAT--TT--TTTCTTCTT-TATTTTTAGCTGTGCGTTTTGGTCGCGTGCCGAAGCGAGA-AAAGGCGCGCATTTTGGCC
droWil2 scf2_1100000004768:2553862-2554140 + dwi_2133 AC-------------------------------TTCCTGCGTG--ACAA--AGAAACAAACA--------------ACA-GACAGGACAACAGCTGCTGTTGCTGCTGTTGCTTGTCCCTTTATTTTCTTGTTGCACCTGCTG-TTGTAATTACAGACGATGATGAAG-ATGAAGATGATG---------------ATGATG--ATG--------------ATGA-------T-----T-G------------------------------------------------TTACATATGTACCTTGTATATATAAA-CT------GTATT----TCTTTAAACAAAAAGTACTAACCGGAA---------TGT--------------------------------AT----T-------TTTTTTTTG-TTTTTGCAGCTGTGCGATTTGGACGCGTGCCCAAGCGAGA-GAAGGCGCGCATTTTGGCC
dp5 XR_group6:10810560-10810799 - AC-------------------------------TTCCTGCGTG--ACAAGCC-------------------------------AGGACAACAGCTGTT------------GC-----------------CCGTGCACCTGCT--CTCCAA-TGAAGGCAGCAATGAAGCGTGTAATTGATGCACCGAAAGGGGCAGGGGGGG--ACC--------------CTAC-------C-----------------------------------TTTAAGTTGAACCAAC------------------------------GATT-------------------ACCTGCC-----ACTAACCTCAATCTTCCCCCTCT----CT--------------------------CT-CTCT-------CTCTCTCTC-TCGTTGCAGCTGTGCGCTTTGGTCGCGTGCCGAAGCGAGA-GAAGGCGCGCATCCTGGCC
droPer2 scaffold_20:720931-721160 - AC-------------------------------TTCCTGCGTG--ACAAGCC-------------------------------AGGACAACAGCTGTT------------GC-----------------CCGTGCACCTGCT--CTCCAA-C---GGCAGCAATGAAGCGTGTAATTGATGCACCGAAAGGGGT-GGGGGGG--ACC--------------CTAC-------C-----------------------------------TTTAAGTTGAACCAAC------------------------------GATT-------------------ACCTGCC-----ACTAACCTCAATCTTCCCC--------------------------------------CCTCT-------CTCTCTCTC-TCGTTGCAGCTGTGCGCTTTGGTCGCGTGCCGAAGCGAGAGAAAGGCGCGCATCCTGGCC
droAna3 scaffold_13111:741486-741623 + GCTGTCCCTCGTTATCTGCTGGTTGACTTAGTTAACTTACATA--CATA--CATAAAT-------------------------------AC----------------------------------------------------------------------------------------------------------------------------------ACAAATACATA------------AATACA------------TAAATA----------------CATAAATACATAAATAC-ATAAATACATAAATAC------------------------------------------------------------------------------------------------------------------------------------ATAAATACATAAATACAT-AAATACAT-----------
droBip1 scf7180000396371:582520-582708 + AC-------------------------------TTCCTGCGTG--ACA-----------------------------------------ACAGCTGTC-------------------------------CTGTGCACCTGCC--AC------------------------TGTAATTGATG------------------GGT--CTC--------------CCCA-------CTCCTCTCTCTTCTCTCT------------------TTTAAGTTGAAACACC------------------------------CTTT-------------------ACAAGGCCAT--ACTTA----A----------C----------------------------------A-CCCCT-------TTTTTTATC-TTTTTGCAGCTGTGCGTTTTGGACGCGTGCCGAAACGCGA-AAAGGCGCGCATCCTGGCC
droKik1 scf7180000302626:373246-373465 - AC-------------------------------TTCCTGCGTG--ACAA--CAGGACAACCG----------------------AAACAACAGCTGTC-------------C-----------------TCTTGCACCTGCT----GT-A--------TGCACTCAAGTGTGTAATTGATG------------------GGC--C----------------TTAA-----T-T-----TTTATGCCTAAA------------------TATATATGTAA-TATG------------------------------ACTT-------------------GCAAGGTT----ACTAACTTGG----------C----------------------------------TTC-CTTT--TTTTTCGTTCCCT-TCATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-GAAGGCGCGCATTTTGGCC
droFic1 scf7180000454107:1547107-1547374 - AC-------------------------------TTCCTGCGTG--ACAA--CAGGACAACTGGGAACTGGGAACTGAGAAAACAGGACAACAGCTGTC-------------------------------CGTTGCACCTGCCATCTGC-G--------TGCACTGAAGTGTGTAATTGATG------------------GGG--CCC--------------GTAA-------T-----TTTATGCTCTAC------------------TTTAGGTTTAAGCACC------------------------------GCTC-------------------GCAAGGCCGAAAACACAACGAAA-TTTCCAA--CCGCTTATA-------------------------A--CTCTTTTTTTCCCCATTCTT-CCATTGCAGCTGTGCGTTTTGGTCGCGTGCCGAAGCGCGA-AAAAGCGCGTATCCTGGCG
droEle1 scf7180000490993:859416-859645 - AC-------------------------------TTCCTGCGTG--ACAA--CAGGACAACTG-------------------------CAACAGCTGTA-------------------------------TTTTGCACCTGCTATCTGC-G--------TGCAGTGAAGTGTGTAATTGATG------------------GGGA-ACC--------------ATAA-------T-----TTTATGCTCAAG------------------TTTAAGTTTAAGCACC--CATTT------------C----------GTTT-------------------ACAAGGCCAAAAACTAACCGAAA-CTTCCGA------------------------------------------C-------GCTTCTTTG-CCATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGTATCCTGGCG
droRho1 scf7180000776770:15606-15732 - TA-------------------------------CTCCTACATA--TACA--T---------------------------------------------------------------------------------------------------------------------ATACAC----------------------------------------------ACAA-------A-----CATATATATATATATATATATATA------TATATATATATATGTG------------------------------TCTT-------------------GTTGTGCTGTGAAACTATTCGT----------TCT--------------------------------ACT-------------TTTTCTG-CTTTGTTTATTGTTTGATTT----------------------------------------
droBia1 scf7180000302193:1264684-1264893 - -C-------------------------------TTCCTGCGTG--ACAA--C-------------------------------AGGACAACAGCTGTC-------------------------------CGCTGCACCTGCT--CTGC-G--------TGCAGTGAAGTGTGCAATTGATG------------------GGGC-CCC--------------ATAA-------T-----TTTATGCTCAAC------------------TCCGAGTTTAAGCACC------------------------------GCTC-------------------ACAAGGCCGAAAACTAACCGAA----------ACC--------------------------------GC-------------TCTTCTTC-CCATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGCATCCTGGCG
droTak1 scf7180000415794:207561-207788 - AC-------------------------------TTCCTGCGTG--ACAA--C-------------------------------AGGACAACAGCTGTC-------------------------------CGTTGCACCTGCT--CTGC-G--------TGCAGTGAAGTGTGCAATTGATG------------------GGC--CCC--------------ATAA-------T-----TTTATGCTCATGTTTGGGCTGAAG------TTTAAGTTTAAGCACC------------------------------GCTT-------------------ACAAGGCCGAAAACTAACCAGA----------AAT--------------------------------ATCCTCT-------TATTTTTTC-CCATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGCATCCTGGCG
droEug1 scf7180000409471:1608020-1608247 + AC-------------------------------TTCCTGCGTG--ACAA--C-------------------------------AGGACACCAGCTGTC-------------------------------CGTTGCACCTGCT--CTGC-G--------TGCACTGAAGTGTGTAATTGAAG------------------GGGTGCCC--------------TTAA-------T-----TTTATGCTCAAGTTTAAGTTTAAG------TTTAAGTTTAAGTACC------------------------------GCTT-------------------ACAAGGCCGAAAACTAACCGAA----------AAT--------------------------------GCCA--T-------ATTTTTGTA-TCATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGTATCCTGGCG
dm3 chr3L:17952671-17952881 - AC-------------------------------TTCCTGCGTG--ACAA--C-------------------------------AGGACAACAGCTGTA-------------------------------CGTTGCACCTGCT--ACGCAA--------TGCAGTGAAGTGTGTAATTGATG------------------GGG--CCC--------------ATAA-------T-----TTTATGCTCAAG------------------TTTAGGTTTAAGCACC------------------------------GCTT-------------------ACAAGGCCGAAAACTAACCGAA----------TGT--------------------------------GTC-------------CTTTTTC-CAATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGTATCCTGGCG
droSim2 3l:17515673-17515883 - dsi_21635 AC-------------------------------TTCCTGCGTG--ACAA--C-------------------------------AGGACAACAGCTGTC-------------------------------CGTTGCACCTGCT--CCGCAG--------TGCAGTGAAGTGTGTAATTGATG------------------GGG--CCC--------------ATAA-------T-----TTTATGCTCACG------------------TTTAGGTTTAAGCACC------------------------------GCTT-------------------ACAAGGCCGAAAACTAACCGAA----------TGT--------------------------------GTC-------------CTTTTTT-CAATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGTATCCTGGCG
droSec2 scaffold_89:56123-56333 - AC-------------------------------TTCCTGCGTG--ACAA--C-------------------------------AGGACAACAGCTGTC-------------------------------CGTTGCACCTGCT--CCGCAA--------TGCAGTGAAGTGTGTAATTGATG------------------GGG--CCC--------------ATAA-------T-----TTTATGCTCACG------------------TTTAGGTTTAAGCACC------------------------------GCTT-------------------ACAAGGCCGAAAACTAACCGAA----------TGT--------------------------------GTC-------------CTCTTTC-CAATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGTATCCTGGCG
droYak3 3L:16098896-16099123 + AC-------------------------------TTCCTGCGTG--ACAA--CAGGACAG-----------------------CAGGACAACAGCTGGT-------------------------------CGTTGCACCTGCT--GCACAG-TGCAG--CGCAGTGAAGTGTGTAATTGATG------------------GGG--CAC--------------ATAA-------T-----TGTATGCTCAAG------------------TCTAGGTTTAAGCACC------------------------------GCTT-------------------ACAAGGCCGAAAACTAAACGAA----------TAT--------------------------------GTCC--T-------CTTTTTTTC-CCATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGCATCCTGGCG
droEre2 scaffold_4784:15928189-15928410 + AC-------------------------------TTCCTGCGTG--ACAA--CGGGAGATCGGGAGATC-------GGGAGAACAGGACAACAGCTGTC-------------------------------CGTTGCACCTGCT--CCGCAA--------TGCAGTGAAGTGTGTAATTGATG------------------GG---CCC--------------ATAA-------T-----T----------G------------------TTTAGGTTTAAGCACC------------------------------GCTT-------------------ACAAGGCCGAAAACTAACCGAA----------TGT--------------------------------CTC---------------CTTTT-TCATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGTATCCTGGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AC-------------------------------TTCCTGCGTG--ACAAA-C-G-----------------------------GCGGCAACAGCTGCG-------------------------------CCTTGCACCTGCT------------------CACTGAAGTGTGAG------G------------------CGG--ACAGACAACAAAAAATTGCACTTGCATA------------CATACA------------TATACA----------------CATACATACATATATAC-ATACATATATAAATATATACATATATGCTCATCTGAATATATTGTTAA----------TTTTGCAA---------------------------------------CTCT-------TTTTCTGTCTACTTTGCAGCTGTTCGCTTTGGTCGCGTGCCGAAGCGCGA-AAAGGCGCGTATTTTGGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................G--ACAAA-C-G-----------------------------GCGGCAACAGCTGCG-------------------------------CCTTG..................................................................................................................................................................................................................................................................................................................................................................2811.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-AAAGGCGCGTATTTTGGC.2011.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTCGCTTTGGTCGCGT................................2011.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGA-AAAGGCGCGTATTTTGGCC2311.001100000
............................................................................................................................................................................................................................................................................................CATACATACATATATAC-ATACATAT..................................................................................................................................................................................25120.081100000
...............................................................................................................................................................................................................................................................................................ACATACATATATAC-ATACATA...................................................................................................................................................................................21200.051100000
droVir3
GC-------------------------------TTCCTGCGTG--ACAAA-C-------------------------------AGAACAACAGCTGCT-------------------------------CCTTGCACCTGTT--CGCC----------------GAAGTGTGAC-------------------------------------------------ACCTTTGTA------------TATACA--------------------------TAAGCT--CCTACATATATATATAT-ATATATATA-AGACTT------------GTAGCTGTGCGTGTTATTAA----------TTTGCCCCCTCT--------------------------------TC-TGCT-------TCTTTCCTC-CCGTTGCAGCTGTGCGCTTTGGTCGCGTGCCCAAGCGAGA-GAAGGCGCGCATTTTGGCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTCGCGTGCCCAAGCGAG.....................2211.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGTCGCGTGCCCAAGCGAGA-GAA................2711.001000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGTCGCGTGCCCAA..........................1911.001000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGA-GAAGGCGCGCATT......2011.001000000000000001000000000000000000000000000000000000000000000000
droGri2
AC-------------------------------TCGCTATGCGGGTCAT--CGTCAGCTGTGCAGCTT-------TG-------------CA-----G-------------------------------CTTTGCACCTGTT--GTT---------------------------------G------------------CT-----------------------G-------T-----TTTTTTCTCTTC------------------T------------------------------------------------T-------------------TCTTGCATTAA------TTT-------------------GTACATGTTGCAAAAACAATTATTAAGTCCG-CAAT--TT--TTTCTTCTT-TATTTTTAGCTGTGCGTTTTGGTCGCGTGCCGAAGCGAGA-AAAGGCGCGCATTTTGGCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTCGCGTGCCGAAGCGAGA-AAAG...............2620.50110
droWil2
AC-------------------------------TTCCTGCGTG--ACAA--AGAAACAAACA--------------ACA-GACAGGACAACAGCTGCTGTTGCTGCTGTTGCTTGTCCCTTTATTTTCTTGTTGCACCTGCTG-TTGTAATTACAGACGATGATGAAG-ATGAAGATGATG---------------ATGATG--ATG--------------ATGA-------T-----T-G------------------------------------------------TTACATATGTACCTTGTATATATAAA-CT------GTATT----TCTTTAAACAAAAAGTACTAACCGGAA---------TGT--------------------------------AT----T-------TTTTTTTTG-TTTTTGCAGCTGTGCGATTTGGACGCGTGCCCAAGCGAGA-GAAGGCGCGCATTTTGGCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................A-GACAGGACAACAGCTGCTGT....................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGA-GAAGGCGCGCATTTTG...2111.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGATTTGGACGCGTGCCCAA..........................2311.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGACGCGTGCCCAAGC........................2111.00100100
............................................................................................................................................................................................................ATG--------------ATGA-------T-----T-G------------------------------------------------TTACATAT...............................................................................................................................................................................................1811.00100010
...........................................................................................................................................................................GAAGATGATG---------------ATGATG--ATG--------------AT.........................................................................................................................................................................................................................................................................21200.30620130
.......................................................................................................................................................................G-ATGAAGATGATG---------------ATGATG--ATG--------------AT.........................................................................................................................................................................................................................................................................24200.25500230
.......................................................................................................................................................................G-ATGAAGATGATG---------------ATGATG--AT..........................................................................................................................................................................................................................................................................................21200.25500230
......................................................................................................................................................................AG-ATGAAGATGATG---------------ATGATG--ATG--------------AT.........................................................................................................................................................................................................................................................................25110.18200020
....................................................................................................................................................................GAAG-ATGAAGATGATG---------------ATGATG--AT..........................................................................................................................................................................................................................................................................................2470.14100001
......................................................................................................................................................................AG-ATGAAGATGATG---------------ATGATG--AT..........................................................................................................................................................................................................................................................................................22140.14200020
.......................................................................................................................................................................G-ATGAAGATGATG---------------ATGATG--ATG--------------A..........................................................................................................................................................................................................................................................................23200.10200020
..........................................................................................................................................................................TGAAGATGATG---------------ATGATG--AT..........................................................................................................................................................................................................................................................................................19200.10200020
......................................................................................................................................................................AG-ATGAAGATGATG---------------ATGATG--ATG--------------...........................................................................................................................................................................................................................................................................23130.08100010
............................................................................................................................................................................AAGATGATG---------------ATGATG--ATG--------------AT.........................................................................................................................................................................................................................................................................20200.05100010
......................................................................................................................................................................AG-ATGAAGATGATG---------------ATGATG--............................................................................................................................................................................................................................................................................................20200.05110000
..........................................................................................................................................................................TGAAGATGATG---------------ATGATG--A...........................................................................................................................................................................................................................................................................................18200.05100001
..........................................................................................................................................................................TGAAGATGATG---------------ATGATG--ATG--------------ATG........................................................................................................................................................................................................................................................................23200.05100100
..........................................................................................................................................................................TGAAGATGATG---------------ATGATG--ATG--------------A..........................................................................................................................................................................................................................................................................21200.05100010
.......................................................................................................................................................................G-ATGAAGATGATG---------------ATGAT...............................................................................................................................................................................................................................................................................................18200.05100100
.......................................................................................................................................................................G-ATGAAGATGATG---------------ATGATG--ATG--------------...........................................................................................................................................................................................................................................................................22200.05100100
..........................................................................................................................................................................TGAAGATGATG---------------ATGATG--ATG--------------...........................................................................................................................................................................................................................................................................20200.05100010
dp5
AC-------------------------------TTCCTGCGTG--ACAAGCC-------------------------------AGGACAACAGCTGTT------------GC-----------------CCGTGCACCTGCT--CTCCAA-TGAAGGCAGCAATGAAGCGTGTAATTGATGCACCGAAAGGGGCAGGGGGGG--ACC--------------CTAC-------C-----------------------------------TTTAAGTTGAACCAAC------------------------------GATT-------------------ACCTGCC-----ACTAACCTCAATCTTCCCCCTCT----CT--------------------------CT-CTCT-------CTCTCTCTC-TCGTTGCAGCTGTGCGCTTTGGTCGCGTGCCGAAGCGAGA-GAAGGCGCGCATCCTGGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTCGCGTGCCGAAGC........................1911.0010010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGCCGAAGCGAGA-GAAGGCGC...........2411.0010000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGCTTTGGTCGCGTGCC.............................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGA-GAAGGCGCGCATCCT....2111.0010000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CTC-TCGTTGCAGCTGTGC.............................................1811.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTCGCGTGCCGAAGC........................1811.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGCCGAAGCGAGA-GAAGG..............2111.0010000000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGAGA-GAAGGCGCGCATCC.....2311.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCGAAGCGAGA-GAAG...............1811.0010000000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTCGCGTGCCGAAGCGAG.....................2111.0010000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCTC-TCGTTGCAGCTG................................................2120.5010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CT-------CTCTCTCTC-TCGTTGCAG...................................................2050.2010100000000
...................................................................................................................................................................................................................................................................................................................................................................................T----CT--------------------------CT-CTCT-------CTCTCTCTC-TCGTT.......................................................23200.0510000000010
droPer2
AC-------------------------------TTCCTGCGTG--ACAAGCC-------------------------------AGGACAACAGCTGTT------------GC-----------------CCGTGCACCTGCT--CTCCAA-C---GGCAGCAATGAAGCGTGTAATTGATGCACCGAAAGGGGT-GGGGGGG--ACC--------------CTAC-------C-----------------------------------TTTAAGTTGAACCAAC------------------------------GATT-------------------ACCTGCC-----ACTAACCTCAATCTTCCCC--------------------------------------CCTCT-------CTCTCTCTC-TCGTTGCAGCTGTGCGCTTTGGTCGCGTGCCGAAGCGAGAGAAAGGCGCGCATCCTGGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
GCTGTCCCTCGTTATCTGCTGGTTGACTTAGTTAACTTACATA--CATA--CATAAAT-------------------------------AC----------------------------------------------------------------------------------------------------------------------------------ACAAATACATA------------AATACA------------TAAATA----------------CATAAATACATAAATAC-ATAAATACATAAATAC------------------------------------------------------------------------------------------------------------------------------------ATAAATACATAAATACAT-AAATACAT-----------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AC-------------------------------TTCCTGCGTG--ACA-----------------------------------------ACAGCTGTC-------------------------------CTGTGCACCTGCC--AC------------------------TGTAATTGATG------------------GGT--CTC--------------CCCA-------CTCCTCTCTCTTCTCTCT------------------TTTAAGTTGAAACACC------------------------------CTTT-------------------ACAAGGCCAT--ACTTA----A----------C----------------------------------A-CCCCT-------TTTTTTATC-TTTTTGCAGCTGTGCGTTTTGGACGCGTGCCGAAACGCGA-AAAGGCGCGCATCCTGGCCSizeHit CountTotal NormTotal
No Reads
droKik1
AC-------------------------------TTCCTGCGTG--ACAA--CAGGACAACCG----------------------AAACAACAGCTGTC-------------C-----------------TCTTGCACCTGCT----GT-A--------TGCACTCAAGTGTGTAATTGATG------------------GGC--C----------------TTAA-----T-T-----TTTATGCCTAAA------------------TATATATGTAA-TATG------------------------------ACTT-------------------GCAAGGTT----ACTAACTTGG----------C----------------------------------TTC-CTTT--TTTTTCGTTCCCT-TCATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-GAAGGCGCGCATTTTGGCCSizeHit CountTotal NormTotal
No Reads
droFic1
AC-------------------------------TTCCTGCGTG--ACAA--CAGGACAACTGGGAACTGGGAACTGAGAAAACAGGACAACAGCTGTC-------------------------------CGTTGCACCTGCCATCTGC-G--------TGCACTGAAGTGTGTAATTGATG------------------GGG--CCC--------------GTAA-------T-----TTTATGCTCTAC------------------TTTAGGTTTAAGCACC------------------------------GCTC-------------------GCAAGGCCGAAAACACAACGAAA-TTTCCAA--CCGCTTATA-------------------------A--CTCTTTTTTTCCCCATTCTT-CCATTGCAGCTGTGCGTTTTGGTCGCGTGCCGAAGCGCGA-AAAAGCGCGTATCCTGGCGSizeHit CountTotal NormTotal
No Reads
droEle1
AC-------------------------------TTCCTGCGTG--ACAA--CAGGACAACTG-------------------------CAACAGCTGTA-------------------------------TTTTGCACCTGCTATCTGC-G--------TGCAGTGAAGTGTGTAATTGATG------------------GGGA-ACC--------------ATAA-------T-----TTTATGCTCAAG------------------TTTAAGTTTAAGCACC--CATTT------------C----------GTTT-------------------ACAAGGCCAAAAACTAACCGAAA-CTTCCGA------------------------------------------C-------GCTTCTTTG-CCATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGTATCCTGGCGSizeHit CountTotal NormTotal
No Reads
droRho1
TA-------------------------------CTCCTACATA--TACA--T---------------------------------------------------------------------------------------------------------------------ATACAC----------------------------------------------ACAA-------A-----CATATATATATATATATATATATA------TATATATATATATGTG------------------------------TCTT-------------------GTTGTGCTGTGAAACTATTCGT----------TCT--------------------------------ACT-------------TTTTCTG-CTTTGTTTATTGTTTGATTT----------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
-C-------------------------------TTCCTGCGTG--ACAA--C-------------------------------AGGACAACAGCTGTC-------------------------------CGCTGCACCTGCT--CTGC-G--------TGCAGTGAAGTGTGCAATTGATG------------------GGGC-CCC--------------ATAA-------T-----TTTATGCTCAAC------------------TCCGAGTTTAAGCACC------------------------------GCTC-------------------ACAAGGCCGAAAACTAACCGAA----------ACC--------------------------------GC-------------TCTTCTTC-CCATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGCATCCTGGCGSizeHit CountTotal NormTotal
No Reads
droTak1
AC-------------------------------TTCCTGCGTG--ACAA--C-------------------------------AGGACAACAGCTGTC-------------------------------CGTTGCACCTGCT--CTGC-G--------TGCAGTGAAGTGTGCAATTGATG------------------GGC--CCC--------------ATAA-------T-----TTTATGCTCATGTTTGGGCTGAAG------TTTAAGTTTAAGCACC------------------------------GCTT-------------------ACAAGGCCGAAAACTAACCAGA----------AAT--------------------------------ATCCTCT-------TATTTTTTC-CCATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGCATCCTGGCGSizeHit CountTotal NormTotal
No Reads
droEug1
AC-------------------------------TTCCTGCGTG--ACAA--C-------------------------------AGGACACCAGCTGTC-------------------------------CGTTGCACCTGCT--CTGC-G--------TGCACTGAAGTGTGTAATTGAAG------------------GGGTGCCC--------------TTAA-------T-----TTTATGCTCAAGTTTAAGTTTAAG------TTTAAGTTTAAGTACC------------------------------GCTT-------------------ACAAGGCCGAAAACTAACCGAA----------AAT--------------------------------GCCA--T-------ATTTTTGTA-TCATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGTATCCTGGCGSizeHit CountTotal NormTotal
No Reads
dm3
AC-------------------------------TTCCTGCGTG--ACAA--C-------------------------------AGGACAACAGCTGTA-------------------------------CGTTGCACCTGCT--ACGCAA--------TGCAGTGAAGTGTGTAATTGATG------------------GGG--CCC--------------ATAA-------T-----TTTATGCTCAAG------------------TTTAGGTTTAAGCACC------------------------------GCTT-------------------ACAAGGCCGAAAACTAACCGAA----------TGT--------------------------------GTC-------------CTTTTTC-CAATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGTATCCTGGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTTTTGGACGCGTGCCG............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGCGTTTTGGACGCGTGCCGAA..........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TAACCGAA----------TGT--------------------------------GTC-------------CTTTTT..............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCGTGCCGAAGCGCGA-AAA................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................AAGCACC------------------------------GCTT-------------------ACAAGGCCGA.............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACGCGTGCCGAAGC........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
........................................................................................AACAGCTGTA-------------------------------CGTTGCAC...............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGAAGCGCGA-AAAGGCGCGTATCCTGG..3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGACGCGTGCCGAAGC........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTTTTGGACGCGTGCCGAAG.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGCGTGCCGAAGCGCGA-AA.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................AA----------TGT--------------------------------GTC-------------CTTTTTC-CAATTGCAG...................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGA-AAAGGCGCGTATCCT....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................AGTGAAGTGTGTAATTGATG------------------GGG--CCC--------------...........................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGCGCGA-AAAGGCGCGTATC......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTTGGACGCGTGCCGAAGC........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AACCGAA----------TGT--------------------------------GTC-------------CTTTTTC-C...........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGACGCGTGCCGAAGCGCGA-AA.................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GCGTG--ACAA--C-------------------------------AGGACAACAGCTGTA-------------------------------CG.....................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGAAGCGCGA-AAAGGCGCGTA........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................CGCAA--------TGCAGTGAAGTGTGTAA.........................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGACGCGTGCCGAAGCGCGA-A..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGACGCGTGCCGAAGCGCGA-AAA................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................G------------------TTTAGGTTTAAGCACC------------------------------GCT...........................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................GCAA--------TGCAGTGAAGTGTGTAATTG......................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGCGTTTTGGACGCGTGC..............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................CT--ACGCAA--------TGCAGTGAAGTGTG............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACGCGTGCCGAAGCGCGA-AAAGGC.............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................AA----------TGT--------------------------------GTC-------------CTTTTTC-CAATTG......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GTG--ACAA--C-------------------------------AGGACAACAGCTGTA-------------------------------CGTTG..................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGCGCGTATCCTGAT.1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AACCGAA----------TGT--------------------------------GTC-------------CTTTTTC-CAATTG......................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGAAGCGCGA-AAAGG..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-AAAGGCGCGTATCCTGGCG2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................AA----------TGT--------------------------------GTC-------------CTTTTTC-CAATTGCA....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CCGAAAACTAACCGAA----------TGT--------------------------------GT..................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGCGTGCCGAAGCGC......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..............................................CAA--C-------------------------------AGGACAACAGCTGTA-------------------------------CG.....................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................CGAA----------TGT--------------------------------GTC-------------CTTTTTC-CAATTG......................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................TTAGGTTTAAGCACC------------------------------GCTT-------------------ACAAGGCCG..............................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................GAA----------TGT--------------------------------GTC-------------CTTTTTC-CAATTGCAG...................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACGCGTGCCGAAGCGCGA-AAA................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGTGCGTTTTGGAA....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TC-------------CTTTTTC-CAATTGCAG...................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................GGTTTAAGCACC------------------------------GCTT-------------------ACAAGGCCGA.............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................ACAAGGCCGAAAACTAACCG...................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................AA----------TGT--------------------------------GTC-------------CTTTTTC-CAATTGC.....................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AC-------------------------------TTCCTGCGTG--ACAA--C-------------------------------AGGACAACAGCTGTC-------------------------------CGTTGCACCTGCT--CCGCAG--------TGCAGTGAAGTGTGTAATTGATG------------------GGG--CCC--------------ATAA-------T-----TTTATGCTCACG------------------TTTAGGTTTAAGCACC------------------------------GCTT-------------------ACAAGGCCGAAAACTAACCGAA----------TGT--------------------------------GTC-------------CTTTTTT-CAATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGTATCCTGGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACGCGTGCCGAAGCGC......................2013.00300300000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCGTTTTGGACGCGTGCCGAAGCG.......................2711.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGCGTTTTGGACGC..................................1811.00100100000000000000
droSec2
AC-------------------------------TTCCTGCGTG--ACAA--C-------------------------------AGGACAACAGCTGTC-------------------------------CGTTGCACCTGCT--CCGCAA--------TGCAGTGAAGTGTGTAATTGATG------------------GGG--CCC--------------ATAA-------T-----TTTATGCTCACG------------------TTTAGGTTTAAGCACC------------------------------GCTT-------------------ACAAGGCCGAAAACTAACCGAA----------TGT--------------------------------GTC-------------CTCTTTC-CAATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGTATCCTGGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAGCGCGA-AAAGGCGCGTA........2311.0010001
....................................................................................................................................TGCACCTGCT--CCGCAA--------TGCAGTGAAGT...............................................................................................................................................................................................................................................................................................................................2711.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................C-------------CTCTTTC-CAATTGCAGT..................................................1830.3310010
droYak3
AC-------------------------------TTCCTGCGTG--ACAA--CAGGACAG-----------------------CAGGACAACAGCTGGT-------------------------------CGTTGCACCTGCT--GCACAG-TGCAG--CGCAGTGAAGTGTGTAATTGATG------------------GGG--CAC--------------ATAA-------T-----TGTATGCTCAAG------------------TCTAGGTTTAAGCACC------------------------------GCTT-------------------ACAAGGCCGAAAACTAAACGAA----------TAT--------------------------------GTCC--T-------CTTTTTTTC-CCATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGCATCCTGGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................AG-TGCAG--CGCAGTGAAGTGTGTA..........................................................................................................................................................................................................................................................................................................................2311.00100010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTTTGGACGCGTGCCG............................1911.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACGCGTGCCGAAGCGCG.....................2211.00100010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTC-CCATTGCAGCTGTGC.............................................2111.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGCGCGA-AAAGGCGCGCATCCTGGC.2811.00100100000000
droEre2
AC-------------------------------TTCCTGCGTG--ACAA--CGGGAGATCGGGAGATC-------GGGAGAACAGGACAACAGCTGTC-------------------------------CGTTGCACCTGCT--CCGCAA--------TGCAGTGAAGTGTGTAATTGATG------------------GG---CCC--------------ATAA-------T-----T----------G------------------TTTAGGTTTAAGCACC------------------------------GCTT-------------------ACAAGGCCGAAAACTAACCGAA----------TGT--------------------------------CTC---------------CTTTT-TCATTGCAGCTGTGCGTTTTGGACGCGTGCCGAAGCGCGA-AAAGGCGCGTATCCTGGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGCGTTTTGGACGCGTGCCGAA..........................2511.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCGTTTTGGACGCGTGCCGAAG.........................2511.0010000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AAAGGCGCGTATCCTGGC.1911.0010100000

Generated: 05/18/2015 at 02:46 AM