dmo_2505

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TATATGGGCAATACAAATACAATTTGTTGCCCAAATTTTTGCTTTCCACTTCCATAAATGCCACTGAGCCAGCTCGAACGGCAATTAGTTGCGCTCGATGTTCTGGCGAGGAGAAATGTGCAAATTCAAGAAAGAAATTGGTAAATAGCAAATGGATTTAAATACATTCATTCATTCATTCCGTGATTTACCTTCACACAGTCTCAATCGGCTTGCTCTTGCTGATTGGAGCTCATAGCTCGCTGGCGCAA ************************************************************************..............((((((......((((....)))).....))))))............******************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	M046 female body
.............................................................................................................GGAGAAATGTGCAAATTCAAGAAAGA....................................................................................................................	26	0	1	1.00	1	1	0
.................................................................................................................................................................................................................GGCTTGCTCTTGCTGATTGGAGCTC.................	25	0	1	1.00	1	0	1
.......................................................................................GTTGCGCTCGATGTTCTGGCG...............................................................................................................................................	21	0	1	1.00	1	1	0
................................................................................................GATGTTCTGGCGAGGAGAAATGT....................................................................................................................................	23	0	1	1.00	1	1	0
...............................................................................................................................................................................................................................GATTGGAGCTCATAGCTCGCTGGC....	24	0	1	1.00	1	0	1
......................................................................................................CTGGCGAGGAGAAATGTGC..................................................................................................................................	19	0	1	1.00	1	1	0
......................................................................................................................................................................................................................................GCTCATAGCTCGCTGGCGCA.	20	0	1	1.00	1	0	1
........................................................................................................................................................................................................GTCTCAATCGGCTTGCTCTTG..............................	21	0	1	1.00	1	0	1
..................................................................................................TGTTCTGGCGAGGAGAAATGTGC..................................................................................................................................	23	0	1	1.00	1	0	1
..........................................................................CGAACGGCAATTAGTTGCGCT............................................................................................................................................................	21	0	1	1.00	1	1	0
...................................................................................................GTTCTGGCGAAGAGAAAAG.....................................................................................................................................	19	2	1	1.00	1	1	0
..........................................................................................GCGCTCGATGTTCTGGCGA..............................................................................................................................................	19	0	1	1.00	1	0	1
.................................................................................................................................................................................................................GGCTTGCTCTTGCTGATTGGAG....................	22	0	1	1.00	1	0	1
.................................................................................................................................................................................................................GGATTGCTCTTGCTGATTGGA.....................	21	1	1	1.00	1	1	0
......................................................................................AGTTGCGCTCGATGTTCTGGC................................................................................................................................................	21	0	1	1.00	1	1	0
............................................................................................GCTCGATGTTCTGGCGAGGAG..........................................................................................................................................	21	0	1	1.00	1	1	0
......................................................................................AGTTGCGCTCGATGTTCTGGCGAG.............................................................................................................................................	24	0	1	1.00	1	1	0
.....................................................................................TAGTTGCGCTCGATGTTCTGG.................................................................................................................................................	21	0	1	1.00	1	0	1
................................................................................................................GAAATGTGCAAATTCAAGAAAGAAA..................................................................................................................	25	0	1	1.00	1	1	0
..........................................................................................................CGAGGAGAAATGTGCAAATTCAAGAAAG.....................................................................................................................	28	0	1	1.00	1	1	0

ATATACCCGTTATGTTTATGTTAAACAACGGGTTTAAAAACGAAAGGTGAAGGTATTTACGGTGACTCGGTCGAGCTTGCCGTTAATCAACGCGAGCTACAAGACCGCTCCTCTTTACACGTTTAAGTTCTTTCTTTAACCATTTATCGTTTACCTAAATTTATGTAAGTAAGTAAGTAAGGCACTAAATGGAAGTGTGTCAGAGTTAGCCGAACGAGAACGACTAACCTCGAGTATCGAGCGACCGCGTT ******************************************************************************************************************..............((((((......((((....)))).....))))))............************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head
.........................................GAAATGTGAAGGTATGTAGGGT............................................................................................................................................................................................	22	3	2	0.50	1	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6680:15470208-15470458 -	dmo_2505	TATATGGGC-AAT-------ACAAATACAATTTGTTGCCCAAATTTTTGCTTTCCACTTCCATAAATGCCACTGAGCCAGCTCGAACGGCAATTAGTTGCGCTCGATGTTC-TGGCGAGGAG--------------------------------AAATGTGCAAATTCAA-----G---AAAGAAATTG--GTAA---ATAG-----CAA-ATGG------ATTTAAATACATTCATT-------------------------------------CATTCATTCCGTGATTTA-----------------CCTTCAC-AC------AGTCTCAATCGGCT---TGCTCTTGCTGATTGGA---GCTCATAGCTCGCTGGCGCAA
droVir3	scaffold_13049:21099117-21099381 -		AC-ATGCCA-AAA-------AAAAAAAAAAGA----AACAAAATTTGTATTTTCCACCTCCATAAATGCTTCAGAGCTGCCAAGAACGCGAATTAGTTCGGCTCGCGGTTC-AGGTGATGCAAGAATTGGTTT-----AGTTT--GCG--GAGAAAATGTGCAAAATCAAAGAAGGAATTGGTAAGTAC--AC------GGATC-----CAA-CT-CCGAG----ACACG-ACTTACAAATA-----------------------------------------TC----------------ACATC---CATCGCCAGCC------T----TGATTGGGT---GCCTCTTGCTGATG---GGTGTTCAGTGCACAGTCGCTCAA
droGri2	scaffold_15110:22583389-22583526 +		A-------A-TACATACACAT--------------------TGCCAATATTTTCCATTTCCATAAATGCTCTTGAAGAGGCTTCACGGTGAATTAGTCGCGCTCGACGTTC-AGCTGG-TATAAG-AG----------AATTC----G--GAGAAAATGTTCAAAATAAAAGCTAC---TGGTGAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004762:5764554-5764755 -		T-------T-GCG-------ACT----------------------G-------------GCATAAATGCCATGGCCTAGGCTAGGTTATAGCTTAGTTATTGGTGAATTTTTGGCCTACTCACAATGC----------GGAAAGAGAG--TAAGGAATGAATGA-----ATTTGA--------------------------------------TGCA-TAAATTTAAATA-ATTGAGC-------------------------------------CGT--------------------------CT---TTTCTATTAGG------TTCCTGGTTCTGCCAGCTATTATTGGTACT---TGGCCTTCAATTGGCTCTGGGTGAG
dp5	XR_group6:1932016-1932255 +		T-------C-GAA-------ACA----------------------GTTTTCTTTCGCTCCCATAAATGCCTCCACTTTGGCAGGGTCACCACTTAGTCGTTCGCGAATTTC-GGACTACTTCAAAGCT----------GCTGATCGTC--TTGAAAATGTGCAACACCGTTTTGTG---TGGTGAGTGA--CTAGTAGGT--GC-----CAA-TT-CTGAA--------------ACT------------TTTAC-TATGTACGCGTAACGTC-TC-------TG----------------TTGTT---GGTA--TCAGC------TCTATGGACGC------TTCTAGTGGTCGC---A---------GCCGCATCTGCTCAA
droPer2	scaffold_9:227835-228074 +		T-------C-GAA-------ACA----------------------GTTTTCTTTCGCTCCCATAAATGCCTCCACTTTGGCAGGGTCGCCACTTAGTCGTTCGCGAATTTC-GGACTACTTCAAAGCT----------GCTGATCGTC--TTGAAAATGTGCAACACTGTTTTGTG---TGGTGAGTGA--CTAGTAGGT--GC-----CAA-TT-CTGAA--------------ACT------------TTTAC-TATGTACGCGTAACGTC-TC-------TG----------------TTGTT---GGTA--TCAGC------TCTATGGACGC------TTCTAGTGGTCGC---A---------GCCGCATCTGCTCAA
droAna3	scaffold_13337:6192909-6193146 +		T-------C-GAAG------CCA----------------------GT---------------TAAATGGTGCTACTCTGCACGGCCTGCCACTTAGTCGTTCGCAAATTTC-GAACAACTACAAACCT----------AATCG----C--GGCACAATGCCAAAAATCGATTCCAG---AGGTGAGAGATGGGGA---AT--GC-----C--------AG-----AACCT-----ACA------------TATAC-CAGATATTGTTAAACCCGTCGTTCGTT----GGAT------------------TAACTTTCAGC------TGTTTGGACAC------TCTTGCTGGTGGCTGGAGGCCTGCAGGTGGCGGCGGCCCAA
droBip1	scf7180000396419:134201-134445 +		GG-CCACTCGAAG-------CCA----------------------GT---------------TAAATGGTGCTACTCTGCACGGCCTGCCACTTAGTCGTTCGCAAATTTC-GAACAACTACAAACCT----------AATCG----C--GGCCCAATGCCAAAAATCGATTCCAG---AGGTGAGAGATGGGGA---AT--------------G-CCAG--------------AACCTATA------------T-CAGCTATTGCTAAACCAGTCGTCCGTT----GGAT----------TACCT---TGCCTTTCAGC------TATTTGGACAC------TCTTGCTGGTGGCTGGAGGCCTGCAGGTGGCGGAGGCCCAA
droKik1	scf7180000302391:879360-879587 -		T-------C-GAGGC-----ACA----------------------GT---------------TAAATGCTGCCACTCTGCCTGGTTAGCCACTTAGTCGTTTGCGAATTTT-GAACCATTCGGAAGCC----------AATCA----G--ACGACAATGCGCCAAACCGAATCCAG---TGGTGAGTAA--CTAG---AGGAGC-----CAA-TC-CCGGA-----ATAT-GGT--------------------------------------------------------TTACTCTTACCCACTACAAAAAATTCTAGC------TCTTTGGGCGC------TACTGCTGCTGGCCGGAGGTCTTCAAGTTGCGGTAGCCCAG
droFic1	scf7180000454113:2709238-2709472 -		CAGGCAGCC-AAA-------GCA----------------------GT---------------TAAATGGTGCCACTTGGCCAGGTTTGCCACTTAGTCGTTCGCGAATTTC-GGACTACTTCAAATAG-GACAACTTCGATCG-------GTTGAAATGCGGAAAGTCAATGGAAG---TGGTTAGTGA--TCAA---ATGG-------------------A----AT--------CCAGCTTCAGTTTTCCCACAAAAATACGC--------------------------------------TTT---ACTCTTGTAGG------CTTTCGGATAG------TTCTCCTGCTGAGCG---TTCTGCAGATTGCTGTTGGCCAG
droEle1	scf7180000491193:3853191-3853409 +		T-------C-GCG-------GCA----------------------GT---------------TAAATGCTGCCACTCTGCCTGGTTTGCCATTTAGTCGCTCCCGAATTTT-GGACTACTTCAAAGCT----------GTTCG-------GTGAAAATGCGCAACCTTGGTTATAG---TGGTAAGTGT--TT-----CGGT-----TTC-GTTCCT-TG-----AAACT-GGTAACCCAAA-----------------------------------------TC----------------GAAAC---CACTTCGCAGG------CCTTTGGACGC------TTTTGCTGTTGGTCGGCGGGCTTCAGGCTGCGATGGCCCAG
droRho1	scf7180000780179:28007-28230 -		T-------C-GAG-------GCA----------------------GT---------------TAAATGCTGCCACTCTGCCCTGTTTGCCACTTAGTCGTTCGCGAATTTT-GGACTACTTCAAAGCT----------GAACG----G--TCGAGAATGCGCAACTTCGATTATAT---TGGTGAGTGTGGGTGG---AGGG-----CAC-GGTCCT-TG-----AGATT-GGTAACCCAAA-----------------------------------------TA----------------TAGTC---AATCGCTTAGG------TCTTTGGACGG------TTCTCCTGCTGGCCGGAGGTCTTCAGGTTGCGGTGGGCCAG
droBia1	scf7180000302428:4185139-4185364 +		T-------A-CCGAG-----GCA----------------------CT---------------TAAATGCGGCTACTCTGCCTGGTTGCCCACTTAGTCGCTCGCGAATTTT-GGACTACTTCAAAGGC----------GTTGGGAAAA-GAAAAGAATGCGAAAAATAGGCTATAG---TGGTGAGGGA--TTGG---AGGA-------G-GCT-CT-TG-----GAACC-AGTAACCCATT-----------------------------------------AC----------------CAATT---CGCTTCGTAGG------TTTCTGGACGG------TTCTGCTGCTGACTGCCGGTCTGCAGGGGGCCTTCGCCCAG
droTak1	scf7180000415741:176280-176510 -		T-------G-AAA-------GCA----------------------GT---------------TAAATGCTGCTACTCCACCCGGTTTGCCACTTAGTCGTTCGCGAATTTT-GGACTACTTCAAAGGT----------GATCGGGGAG--GAAAAAATGCGAAAAATCGATTATAG---CGGTGAGTGA--GTGA---AGGGGGCACTCG-GTCCTT-GG-----AAGCT-AGAAGCTCATA-----------------------------------------AT----------------TGATC---CATCTGCTAGG------TCTTTGGACGG------TTCTACTGATAACCGGAGGTCTCCAGGTGACCCTGGCCCAG
droEug1	scf7180000409466:4032046-4032266 +		T-------C-GAG-------GAA----------------------CT---------------TAAATGGAGCTACTCTGCCTGGTTGGCCACTTAGTCGTTCGCGAATTTT-GGACTACTTCAAAGGT----------GAAGG----AAGGAAATAATGAGAAAAGTCGCTTATAG---TGGTTAGTTA--GTGA---GTGT-----TT----TGCT-TG-----AAACT-AGTAAGCCATA-----------------------------------------CC----------------CAATC---CCATTCATAGG------TTATTGGACGG------TTGTGCTGCTGACCGCAAGTCTTCAGGTTGTTCTGGCACAA
dm3	chr3L:11940735-11940956 +		T-------C-ATG-------GCA----------------------GT---------------TAAATGGTGCTACACGGCCTGGTTTGCCACTTAGTCGTTCGCGAAATTC-GGACTACTTTAAAGGT----------GATCT----C--GGAAGAATGCGACCAATCGATTTTGG---GGGTAAGCTG--GTGA---AGAG-----TTG-GCTACC-CA-----AGGCT-AGTAACTTATT-----------------------------------------TC----------------GGGTC---CGTATCCTAGG------TCTCTGGACCG------TTCTGCTGCTTATCGGAGGTCTTCAAACTGTGGTAGCCCAG
droSim2	3l:11644530-11644751 +	dsi_647	T-------C-ATG-------GCA----------------------GT---------------TAAATGGTGCTACACGGCCTGGTTTGCCACTTAGTCGTTCGCGAAATTC-GGACTACCTTAAAGGT----------GATCT----C--GGGAGAATGCGTCCAATCGATTTTGG---GGGTAAGCTG--GTGA---AGAG-----TTG-GCTACC-CA-----AGGCT-AGTAACTTATT-----------------------------------------TC----------------GGGTT---CGTATCCTAGG------TCTCTGGACCC------TTCTGCTGCTTATCGGAAGTCTTCACACCGTGGTAGCCCAG
droSec2	scaffold_0:4129356-4129577 +		T-------C-ATG-------GCA----------------------GT---------------TAAATGGTGCTACACGGCCTGGTTTGCCACTTAGTCGTTCGCGAAATTC-GGACTACTTTAAAGGT----------GATCT----C--GGGAGAATGCGTCCAATCGATTTTGG---GGGTGAGCTG--GTGA---AGAG-----TTG-GCTACC-CA-----AGTCT-AGTAACTTATT-----------------------------------------TC----------------AGGTT---CGTATCCTAGG------TCTCTGGACCC------TTCTGCTGCTTATCGGAAGCCTTCACACTGTGTTAGCCCAG
droYak3	3L:11986350-11986577 +		T-------C-ATG-------GCA----------------------GT---------------TAAATGGTGCTACTCGGTGCGGTTTGCCACTTAGTCGTTCGCGAAATTC-GAACTACTTTGCAGGT----------GATCT----C--GGGAAAATGCGACTAATCGATTTTGG---TGGTGAGCTG--GTGC---AGAG-----TTG-GCTACT-TA-----AAGCT-GGCAACTCATT-----------------------------------------TC----------------GGATT---CATATTTTAGGTGTCTGTCTTTGGACAG------TTCTGCTGCTCAGCGCAGGTTTGCACACTGTGTTCGCCCAG
droEre2	scaffold_4784:11931351-11931573 +		T-------C-TTG-------GCA----------------------GT---------------TAAATGGGGCTACTCGGCCTGGTTTGCAGCTTAGTCGTTCGCGAAATTC-TGACTACTTTGAAGGT----------GATCT----C--GGGAGAATGCGACCAGTCAATTTTGG---GGGTGAGCTG--CTGA---AGAG-----TTG-GCTACT-TA-----GAGCA-AGTAACTCCTT-----------------------------------------TC----------------GGTTTC--CACATCTCAGG------TCTCTGGACAG------TTCTGCTGCTTGCCGCAGGTCTGCACACTGTGGTAGCCCAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

TATATGGGC-AAT-------ACAAATACAATTTGTTGCCCAAATTTTTGCTTTCCACTTCCATAAATGCCACTGAGCCAGCTCGAACGGCAATTAGTTGCGCTCGATGTTC-TGGCGAGGAG--------------------------------AAATGTGCAAATTCAA-----G---AAAGAAATTG--GTAA---ATAG-----CAA-ATGG------ATTTAAATACATTCATT-------------------------------------CATTCATTCCGTGATTTA-----------------CCTTCAC-AC------AGTCTCAATCGGCT---TGCTCTTGCTGATTGGA---GCTCATAGCTCGCTGGCGCAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................GGAG--------------------------------AAATGTGCAAATTCAA-----G---AAAGA........................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................GGCT---TGCTCTTGCTGATTGGA---GCTC.................	25	1	1.00	1	1	0	0	0	0	0
...............................................................................................GTTGCGCTCGATGTTC-TGGCG...........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
........................................................................................................GATGTTC-TGGCGAGGAG--------------------------------AAATGT................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................GATTGGA---GCTCATAGCTCGCTGGC....	24	1	1.00	1	1	0	0	0	0	0
..............................................................................................................C-TGGCGAGGAG--------------------------------AAATGTGC..............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................GCTCATAGCTCGCTGGCGCA.	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GTCTCAATCGGCT---TGCTCTTG.................................	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................TGTTC-TGGCGAGGAG--------------------------------AAATGTGC..............................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..................................................................................CGAACGGCAATTAGTTGCGCT.........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..................................................................................................GCGCTCGATGTTC-TGGCGA..........................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GGCT---TGCTCTTGCTGATTGGA---G....................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................AGTTGCGCTCGATGTTC-TGGC............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
....................................................................................................GCTCGATGTTC-TGGCGAGGAG--------------------------------......................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..............................................................................................AGTTGCGCTCGATGTTC-TGGCGAG.........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.............................................................................................TAGTTGCGCTCGATGTTC-TGG.............................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................G--------------------------------AAATGTGCAAATTCAA-----G---AAAGAAA......................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...................................................................................................................CGAGGAG--------------------------------AAATGTGCAAATTCAA-----G---AAAG.........................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1

droVir3

AC-ATGCCA-AAA-------AAAAAAAAAAGA----AACAAAATTTGTATTTTCCACCTCCATAAATGCTTCAGAGCTGCCAAGAACGCGAATTAGTTCGGCTCGCGGTTC-AGGTGATGCAAGAATTGGTTT-----AGTTT--GCG--GAGAAAATGTGCAAAATCAAAGAAGGAATTGGTAAGTAC--AC------GGATC-----CAA-CT-CCGAG----ACACG-ACTTACAAATA-----------------------------------------TC----------------ACATC---CATCGCCAGCC------T----TGATTGGGT---GCCTCTTGCTGATG---GGTGTTCAGTGCACAGTCGCTCAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................CTTGCTGATG---GGTGTTCAGTGCACAGT.......	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................GGTGATGCAAGAATTGGT.............................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TT-----AGTTT--GCG--GAGAAAATGTG...............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................G--GAGAAAATGTGCAAAATC........................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................GCGGTTC-AGGTGATGCAAGA...................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................TGGTTT-----AGTTT--GCG--GAGAA.....................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................GTGATGCAAGAATTGGTTT-----AGTTT--GC.............................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................T-----AGTTT--GCG--GAGAAAATGTGCA.............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................GCTTCAGAGCTGCCAAGAAC.........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

A-------A-TACATACACAT--------------------TGCCAATATTTTCCATTTCCATAAATGCTCTTGAAGAGGCTTCACGGTGAATTAGTCGCGCTCGACGTTC-AGCTGG-TATAAG-AG----------AATTC----G--GAGAAAATGTTCAAAATAAAAGCTAC---TGGTGAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

T-------T-GCG-------ACT----------------------G-------------GCATAAATGCCATGGCCTAGGCTAGGTTATAGCTTAGTTATTGGTGAATTTTTGGCCTACTCACAATGC----------GGAAAGAGAG--TAAGGAATGAATGA-----ATTTGA--------------------------------------TGCA-TAAATTTAAATA-ATTGAGC-------------------------------------CGT--------------------------CT---TTTCTATTAGG------TTCCTGGTTCTGCCAGCTATTATTGGTACT---TGGCCTTCAATTGGCTCTGGGTGAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................TTATAGCTTAGTTATTGGTGA......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
....................................................................................................................TACTCACAATGC----------GGAAAGA...............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0

dp5

T-------C-GAA-------ACA----------------------GTTTTCTTTCGCTCCCATAAATGCCTCCACTTTGGCAGGGTCACCACTTAGTCGTTCGCGAATTTC-GGACTACTTCAAAGCT----------GCTGATCGTC--TTGAAAATGTGCAACACCGTTTTGTG---TGGTGAGTGA--CTAGTAGGT--GC-----CAA-TT-CTGAA--------------ACT------------TTTAC-TATGTACGCGTAACGTC-TC-------TG----------------TTGTT---GGTA--TCAGC------TCTATGGACGC------TTCTAGTGGTCGC---A---------GCCGCATCTGCTCAA

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

T-------C-GAA-------ACA----------------------GTTTTCTTTCGCTCCCATAAATGCCTCCACTTTGGCAGGGTCGCCACTTAGTCGTTCGCGAATTTC-GGACTACTTCAAAGCT----------GCTGATCGTC--TTGAAAATGTGCAACACTGTTTTGTG---TGGTGAGTGA--CTAGTAGGT--GC-----CAA-TT-CTGAA--------------ACT------------TTTAC-TATGTACGCGTAACGTC-TC-------TG----------------TTGTT---GGTA--TCAGC------TCTATGGACGC------TTCTAGTGGTCGC---A---------GCCGCATCTGCTCAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................CTACTTCAAAGCT----------GCTGATCGTC--TTGA......................................................................................................................................................................................................................................	27	1	4.00	4	4	0	0	0	0	0
............................................................................................................TTC-GGACTACTTCAAAGCT----------GCT...................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
....................................................................................................................TACTTCAAAGCT----------GCTGATCGT.............................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................CAAAGCT----------GCTGATCGTC--T.........................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
.................................................................................................................GACTACTTCAAAGCT----------GCTGATCGT.............................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
........................................................................................................GAATTTC-GGACTACTTCAAAGCT----------GCT...................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................GTC--TTGAAAATGTGCAACACTGTTTTGT.................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
............................................................................................................................AGCT----------GCTGATCGTC--TTGAAAATGTGC..............................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...................................................................................................................CTACTTCAAAGCT----------GCTGATCGTC--TTGG......................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
......................................................................................................GCGAATTTC-GGACTACTTC......................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................GAATTTC-GGACTACTTCA.....................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................C--TTGAAAATGTGCAACACTGTTC....................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....................................................................................................................TACTTCAAAGCT----------GCTGATCGTC--TT........................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.................................................................................................CGTTCGCGAATTTC-GGAC............................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................C--TTGAAAATGTGCAACACTGTTTTGT.................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................G----------------TTGTT---GGTA--TCAGC------TCTA......................................................	19	1	1.00	1	0	0	1	0	0	0
...................................................................................................................CTACTTCAAAGCT----------GCTGATCGTC--T.........................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................CTACTTCAAAGCT----------GCTGATCGTC--TT........................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................GCGAATTTC-GGACTACTTCA.....................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CTATGGACGC------TTCTAGTG.................................	18	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................C------TCTATGGACGC------TTCTAGT..................................	19	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................C--TTGAAAATGTGCAACACTGTTT....................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0

droAna3

T-------C-GAAG------CCA----------------------GT---------------TAAATGGTGCTACTCTGCACGGCCTGCCACTTAGTCGTTCGCAAATTTC-GAACAACTACAAACCT----------AATCG----C--GGCACAATGCCAAAAATCGATTCCAG---AGGTGAGAGATGGGGA---AT--GC-----C--------AG-----AACCT-----ACA------------TATAC-CAGATATTGTTAAACCCGTCGTTCGTT----GGAT------------------TAACTTTCAGC------TGTTTGGACAC------TCTTGCTGGTGGCTGGAGGCCTGCAGGTGGCGGCGGCCCAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................AACTACAAACCT----------AATCG----C--GG........................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
........................................................................................................................ACAAACCT----------AATCG----C--GGCACAATGC................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................ACTACAAACCT----------AATCG----C--GGCACAA...................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
....................................................................................................TCGCAAATTTC-GAACAAC.........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GGTGGCTGGAGGCCTGCAGGTGGCGGC.......	27	1	1.00	1	0	1	0	0	0	0
......................................................................................................................CTACAAACCT----------AATCG----C--GGCACAATGCC...............................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................TACAAACCT----------AATCG----C--GGCACA....................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droBip1

GG-CCACTCGAAG-------CCA----------------------GT---------------TAAATGGTGCTACTCTGCACGGCCTGCCACTTAGTCGTTCGCAAATTTC-GAACAACTACAAACCT----------AATCG----C--GGCCCAATGCCAAAAATCGATTCCAG---AGGTGAGAGATGGGGA---AT--------------G-CCAG--------------AACCTATA------------T-CAGCTATTGCTAAACCAGTCGTCCGTT----GGAT----------TACCT---TGCCTTTCAGC------TATTTGGACAC------TCTTGCTGGTGGCTGGAGGCCTGCAGGTGGCGGAGGCCCAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

T-------C-GAGGC-----ACA----------------------GT---------------TAAATGCTGCCACTCTGCCTGGTTAGCCACTTAGTCGTTTGCGAATTTT-GAACCATTCGGAAGCC----------AATCA----G--ACGACAATGCGCCAAACCGAATCCAG---TGGTGAGTAA--CTAG---AGGAGC-----CAA-TC-CCGGA-----ATAT-GGT--------------------------------------------------------TTACTCTTACCCACTACAAAAAATTCTAGC------TCTTTGGGCGC------TACTGCTGCTGGCCGGAGGTCTTCAAGTTGCGGTAGCCCAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAGGCAGCC-AAA-------GCA----------------------GT---------------TAAATGGTGCCACTTGGCCAGGTTTGCCACTTAGTCGTTCGCGAATTTC-GGACTACTTCAAATAG-GACAACTTCGATCG-------GTTGAAATGCGGAAAGTCAATGGAAG---TGGTTAGTGA--TCAA---ATGG-------------------A----AT--------CCAGCTTCAGTTTTCCCACAAAAATACGC--------------------------------------TTT---ACTCTTGTAGG------CTTTCGGATAG------TTCTCCTGCTGAGCG---TTCTGCAGATTGCTGTTGGCCAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T-------C-GCG-------GCA----------------------GT---------------TAAATGCTGCCACTCTGCCTGGTTTGCCATTTAGTCGCTCCCGAATTTT-GGACTACTTCAAAGCT----------GTTCG-------GTGAAAATGCGCAACCTTGGTTATAG---TGGTAAGTGT--TT-----CGGT-----TTC-GTTCCT-TG-----AAACT-GGTAACCCAAA-----------------------------------------TC----------------GAAAC---CACTTCGCAGG------CCTTTGGACGC------TTTTGCTGTTGGTCGGCGGGCTTCAGGCTGCGATGGCCCAG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T-------C-GAG-------GCA----------------------GT---------------TAAATGCTGCCACTCTGCCCTGTTTGCCACTTAGTCGTTCGCGAATTTT-GGACTACTTCAAAGCT----------GAACG----G--TCGAGAATGCGCAACTTCGATTATAT---TGGTGAGTGTGGGTGG---AGGG-----CAC-GGTCCT-TG-----AGATT-GGTAACCCAAA-----------------------------------------TA----------------TAGTC---AATCGCTTAGG------TCTTTGGACGG------TTCTCCTGCTGGCCGGAGGTCTTCAGGTTGCGGTGGGCCAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

T-------A-CCGAG-----GCA----------------------CT---------------TAAATGCGGCTACTCTGCCTGGTTGCCCACTTAGTCGCTCGCGAATTTT-GGACTACTTCAAAGGC----------GTTGGGAAAA-GAAAAGAATGCGAAAAATAGGCTATAG---TGGTGAGGGA--TTGG---AGGA-------G-GCT-CT-TG-----GAACC-AGTAACCCATT-----------------------------------------AC----------------CAATT---CGCTTCGTAGG------TTTCTGGACGG------TTCTGCTGCTGACTGCCGGTCTGCAGGGGGCCTTCGCCCAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

T-------G-AAA-------GCA----------------------GT---------------TAAATGCTGCTACTCCACCCGGTTTGCCACTTAGTCGTTCGCGAATTTT-GGACTACTTCAAAGGT----------GATCGGGGAG--GAAAAAATGCGAAAAATCGATTATAG---CGGTGAGTGA--GTGA---AGGGGGCACTCG-GTCCTT-GG-----AAGCT-AGAAGCTCATA-----------------------------------------AT----------------TGATC---CATCTGCTAGG------TCTTTGGACGG------TTCTACTGATAACCGGAGGTCTCCAGGTGACCCTGGCCCAG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

T-------C-GAG-------GAA----------------------CT---------------TAAATGGAGCTACTCTGCCTGGTTGGCCACTTAGTCGTTCGCGAATTTT-GGACTACTTCAAAGGT----------GAAGG----AAGGAAATAATGAGAAAAGTCGCTTATAG---TGGTTAGTTA--GTGA---GTGT-----TT----TGCT-TG-----AAACT-AGTAAGCCATA-----------------------------------------CC----------------CAATC---CCATTCATAGG------TTATTGGACGG------TTGTGCTGCTGACCGCAAGTCTTCAGGTTGTTCTGGCACAA	Size	Hit Count	Total Norm	Total
No Reads

dm3

T-------C-ATG-------GCA----------------------GT---------------TAAATGGTGCTACACGGCCTGGTTTGCCACTTAGTCGTTCGCGAAATTC-GGACTACTTTAAAGGT----------GATCT----C--GGAAGAATGCGACCAATCGATTTTGG---GGGTAAGCTG--GTGA---AGAG-----TTG-GCTACC-CA-----AGGCT-AGTAACTTATT-----------------------------------------TC----------------GGGTC---CGTATCCTAGG------TCTCTGGACCG------TTCTGCTGCTTATCGGAGGTCTTCAAACTGTGGTAGCCCAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................................GACCAATCGATTTTGG---GGGT.........................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................CG------TTCTGCTGCTTATCGGA........................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................AGGT----------GATCT----C--GGAAGAATG.................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TACTTTAAAGGT----------GATCT----C--GGAAGAATGC................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................CCAATCGATTTTGG---GGGT.........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................GATCT----C--GGAAGAATGCGACCA...........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CTCTGGACCG------TTCTGCTGCT...............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................ACTTTAAAGGT----------GATCT----C--G.........................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CTGGACCG------TTCTGCTGCTTATCGGAG.......................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................AGGT----------GATCT----C--GGAAGAATGCG...............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................TACTTTAAAGGT----------GATCT----C--GGA.......................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TAGTCGTTCGCGAAATTC-GGACTA..........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CTCTGGACCG------TTCTGCTGCTTATCGGAG.......................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CCG------TTCTGCTGCTTATCGGA........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................TTAAAGGT----------GATCT----C--GGAAGAA...................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................G-GCTACC-CA-----AGGCT-AGTAA....................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................GATCT----C--GGAAGAATGCGACC............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................ATGCGACCAATCGATTTTGG---GGGT.........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................TGCTTATCGGAGGTCTTCA................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................G---GGGTAAGCTG--GTGA---AAG.......................................................................................................................................................................................	18	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

T-------C-ATG-------GCA----------------------GT---------------TAAATGGTGCTACACGGCCTGGTTTGCCACTTAGTCGTTCGCGAAATTC-GGACTACCTTAAAGGT----------GATCT----C--GGGAGAATGCGTCCAATCGATTTTGG---GGGTAAGCTG--GTGA---AGAG-----TTG-GCTACC-CA-----AGGCT-AGTAACTTATT-----------------------------------------TC----------------GGGTT---CGTATCCTAGG------TCTCTGGACCC------TTCTGCTGCTTATCGGAAGTCTTCACACCGTGGTAGCCCAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................AATTC-GGACTACCTTAAAGGT----------......................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................CGCGAAATTC-GGACTACC........................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TTATCGGAAGTCTTCACACCGTGG........	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................G------TCTCTGGACCC------TTCTGCTGCTTATC...........................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TTATCGGAAGTCTTCACACCGTGGG.......	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

T-------C-ATG-------GCA----------------------GT---------------TAAATGGTGCTACACGGCCTGGTTTGCCACTTAGTCGTTCGCGAAATTC-GGACTACTTTAAAGGT----------GATCT----C--GGGAGAATGCGTCCAATCGATTTTGG---GGGTGAGCTG--GTGA---AGAG-----TTG-GCTACC-CA-----AGTCT-AGTAACTTATT-----------------------------------------TC----------------AGGTT---CGTATCCTAGG------TCTCTGGACCC------TTCTGCTGCTTATCGGAAGCCTTCACACTGTGTTAGCCCAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................................................GTCCAATCGATTTTGG---GGGT.........................................................................................................................................................................................................	20	1	12.00	12	0	0	12	0
.......................................................................................................................................................................................................................................................................................................................................CTCTGGACCC------TTCTGCTGC................................	19	1	10.00	10	1	0	9	0
.......................................................................................................................................................................................................................................................................................................................................CTCTGGACCC------TTCTGCTGCTTATCGGA........................	27	1	10.00	10	0	0	10	0
.......................................................................................................................................................................................................................................................................................................................................CTCTGGACCC------TTCTGCTGCT...............................	20	1	6.00	6	1	0	5	0
...........................................................................................................ATTC-GGACTACTTTAAAGGT----------......................................................................................................................................................................................................................................................	20	1	5.00	5	0	0	5	0
..............................................................................................................................GT----------GATCT----C--GGGAGAATGC................................................................................................................................................................................................................................	18	1	4.00	4	0	0	4	0
..........................................................................................................................................................GAATGCGTCCAATCGATTTTGG---GG...........................................................................................................................................................................................................	24	1	3.00	3	0	0	3	0
.......................................................................................................................................................................................................................................................................................................................................CTCTGGACCC------TTCTGCTGCTT..............................	21	1	3.00	3	0	0	3	0
.........................................................................................................................................................................................................................................................................................................................................CTGGACCC------TTCTGCTGCTTATCGGA........................	25	1	3.00	3	0	0	3	0
.......................................................................................................................TTTAAAGGT----------GATCT----C--GGGA......................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
......................................................................................................................CTTTAAAGGT----------GATCT----C--GGGA......................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0
.......................................................................................................................................................................................................................................................................................................................................CTCTGGACCC------TTCTGCTGCTTATC...........................	24	1	2.00	2	0	0	2	0
..........................................................................................................................AAAGGT----------GATCT----C--GGGAGAATGCGTCC............................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0
................................................................................................................................................................GTCCAATCGATTTTGG---GGGTCT.......................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0
..........................................................................................................................................GATCT----C--GGGAGAATGCGTCC............................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0
............................................................................................................................................................ATGCGTCCAATCGATTTTGG---GGGT.........................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0
......................................................................................................................CTTTAAAGGT----------GATCT----C--GGGAGAATGC................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0
...................................................................................................................CTACTTTAAAGGT----------GATCT----C--GGGA......................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0
............................................................................................................................AGGT----------GATCT----C--GGGAGAATG.................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
................................................................................................................................................................................................................................................................................................................................................C------TTCTGCTGCTTATCGGA........................	18	1	2.00	2	0	0	2	0
...................................................................................................................CTACTTTAAAGGT----------GATCT----C--GGGAGA....................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0
...........................................................................................................................................................AATGCGTCCAATCGATTTTGG---G............................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0
............................................................................................................................................................ATGCGTCCAATCGATTTTGG---GG...........................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0
......................................................................................................GCGAAATTC-GGACTACTTTAAAGGT----------......................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0
..........................................................................................................................................................GAATGCGTCCAATCGATTTTGG---G............................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0
........................................................................................................................TTAAAGGT----------GATCT----C--GGGA......................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
......................................................................................................................CTTTAAAGGT----------GATCT----C--GGGAGA....................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.......................................................................................................................TTTAAAGGT----------GATCT----C--GGGAGAATGC................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................CTGCTGCTTATCGGAAGCCTT..................	21	1	1.00	1	0	0	1	0
..............................................................................................................................GT----------GATCT----C--GGGAGAATGCGT..............................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................CTGGACCC------TTCTGCTGCTTATC...........................	22	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................CTGGACCC------TTCTGCTGCTTATCG..........................	23	1	1.00	1	0	0	1	0
........................................................................................................................TTAAAGGT----------GATCT----C--GGGAG.....................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..........................................................................................................................................GATCT----C--GGGAGAATGCGTCCAATC........................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.............................................................................................................................................................TGCGTCCAATCGATTTTGG---GGG..........................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................CC------TTCTGCTGCTTATCGGA........................	19	1	1.00	1	0	0	1	0
...........................................................................................................................................ATCT----C--GGGAGAATGCGTCCA...........................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
..............................................................................................................................................................GCGTCCAATCGATTTTGG---.............................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
........................................................................................................................................................GAGAATGCGTCCAATCGATTTTGG---G............................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
..........................................................................................................................................GATCT----C--GGGAGAATGCGTCCAAT.........................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................TCTGGACCC------TTCTGCTGCTTATCGGA........................	26	1	1.00	1	0	0	1	0
......................................................................................................................CTTTAAAGGT----------GATCT----C--GGGAG.....................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.........................................................................................................................TAAAGGT----------GATCT----C--GGGAGAATGCGTCC............................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
........................................................................................................................................................................................AGCTG--GTGA---AGAG-----TTG-GCTACC-......................................................................................................................................................................	22	1	1.00	1	0	0	1	0
........................................................................................................GAAATTC-GGACTACTTTAAAG..................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
..........................................................................................................AATTC-GGACTACTTTAAAGGT----------......................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.....................................................................................................CGCGAAATTC-GGACTACTTTAAA...................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................CTTCACACTGTGTTAGCCC..	19	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................CTGGACCC------TTCTGCTGCTTATCGGAA.......................	26	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................CTTATCGGAAGCCTTCACACTGT..........	23	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................CTGGACCC------TTCTGCTGCTTATCGGAAGC.....................	28	1	1.00	1	0	0	1	0
..................................................................................................................................................................CCAATCGATTTTGG---GGGT.........................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
........................................................................................................................................................GAGAATGCGTCCAATCGATTTTGG---GGGT.........................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0
.........................................................................................................................TAAAGGT----------GATCT----C--GGGAGAATGCGT..............................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
..........................................................................................................................AAAGGT----------GATCT----C--GGGAGAATGCGTC.............................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.........................................................................................................................................................AGAATGCGTCCAATCGATTTTGG---GG...........................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.........................................................................................................................TAAAGGT----------GATCT----C--GGGAGA....................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
................................................................................................................................................................GTCCAATCGATTTTGG---GGGTC........................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................TTATCGGAAGCCTTCACACT............	20	1	1.00	1	0	0	1	0
.................................................................................................................GACTACTTTAAAGGT----------GATCT----C--GGGA......................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
...........................................................................................................................AAGGT----------GATCT----C--GGGAGAATGCGTCC............................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................C------TTCTGCTGCTTATCGGAAGCC....................	22	1	1.00	1	0	0	1	0
.....................................................................................................CGCGAAATTC-GGACTACTTTAAAG..................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
........................................................................................................GAAATTC-GGACTACTTTAAAGGT----------GAT...................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
.....................................................................................................................ACTTTAAAGGT----------GATCT----C--GGGAGA....................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.......................................................................................................................TTTAAAGGT----------GATCT----C--GGGAG.....................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
............................................................................................................................................................ATGCGTCCAATCGATTTTGG---G............................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
..........................................................................................................................AAAGGT----------GATCT----C--GGGAGAAT..................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................CTGCTGCTTATCGGAAGCCT...................	20	1	1.00	1	0	0	1	0
.............................................................................................................................................................TGCGTCCAATCGATTTTGG---GG...........................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.......................................................................................................................TTTAAAGGT----------GATCT----C--GGG.......................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
...................................................................................................................CTACTTTAAAGGT----------GATCT----C--GG........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................CTCTGGACCC------TTCTGCTGCTTAT............................	23	1	1.00	1	0	0	1	0
.........................................................................................................................................................AGAATGCGTCCAATCGATTTTGG---G............................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
........................................................................................................................TTAAAGGT----------GATCT----C--GGGAGAATGC................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.........................................................................................................................................................AGAATGCGTCCAATCGAT.....................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................G------TCTCTGGACCC------TTCTGCTGCTTAT............................	25	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................CTTCACACTGTGTTAGCCCA.	20	1	1.00	1	0	0	1	0

droYak3

T-------C-ATG-------GCA----------------------GT---------------TAAATGGTGCTACTCGGTGCGGTTTGCCACTTAGTCGTTCGCGAAATTC-GAACTACTTTGCAGGT----------GATCT----C--GGGAAAATGCGACTAATCGATTTTGG---TGGTGAGCTG--GTGC---AGAG-----TTG-GCTACT-TA-----AAGCT-GGCAACTCATT-----------------------------------------TC----------------GGATT---CATATTTTAGGTGTCTGTCTTTGGACAG------TTCTGCTGCTCAGCGCAGGTTTGCACACTGTGTTCGCCCAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................GG---TGGTGAGCTG--GTGC---AGAG-----TTG-.............................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................ATGCGACTAATCGATTTTG.................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................GAAATTC-GAACTACTTTGCAGGT----------......................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................AATCGATTTTGG---TGGTGTC......................................................................................................................................................................................................	19	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

T-------C-TTG-------GCA----------------------GT---------------TAAATGGGGCTACTCGGCCTGGTTTGCAGCTTAGTCGTTCGCGAAATTC-TGACTACTTTGAAGGT----------GATCT----C--GGGAGAATGCGACCAGTCAATTTTGG---GGGTGAGCTG--CTGA---AGAG-----TTG-GCTACT-TA-----GAGCA-AGTAACTCCTT-----------------------------------------TC----------------GGTTTC--CACATCTCAGG------TCTCTGGACAG------TTCTGCTGCTTGCCGCAGGTCTGCACACTGTGGTAGCCCAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................ATTC-TGACTACTTTGAAGGT----------......................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CTCTGGACAG------TTCTGCTGCTTGCC...........................	24	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................GATCT----C--GGGAGAATGCGAC.............................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................GT----------GATCT----C--GGGAGAATGCGACC............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................GTTCGCGAAATTC-TGACTACTTTGAAGGT----------......................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0

dmo_2505

scaffold_6680:15470258-15470408 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads