ID:

dmo_25

 Coordinate:

scaffold_6496:10610076-10610137 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.6 -33.4 -33.2

Flybase annnotation

utr3 [utr3_minus_3253]

No Repeatable elements found

Sense Strand Reads

AGTGGTCAACGGAGTGTGGACACAATTGGAAATTGGAATCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATCAAATGTTATTGCTTGAGAATACACGTAGTTAGCCAGATTCGCCCAACATGGCAATGGCAACATCAATTATTTACCTCGC

***********************************((((((((..((((.((((((((.((((.(((.(((((((((...))))...))))).))))))).)))))))).))))))).)))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 M046

female body

 V056

head

 V110

male body		 V049

head

 V041

embryo
.........................................................................................TATTGCTTGAGAATACACGTAG................................................... 22 0 1 8045.00 8045 2187 2318 1654 952 800 134
.........................................................................................TATTGCTTGAGAATACACGTA.................................................... 21 0 1 796.00 796 18 70 378 141 189 0
.........................................................................................TATTGCTTGAGAATACACGT..................................................... 20 0 1 399.00 399 9 42 192 70 86 0
..................................................ACGTGTATGCTCGTAGCTATAAC......................................................................................... 23 0 1 223.00 223 163 5 20 3 12 20
..........................................................................................ATTGCTTGAGAATACACGTAG................................................... 21 0 1 207.00 207 49 139 10 2 7 0
.........................................................................................TATTGCTTGAGAATACACGTAGT.................................................. 23 0 1 153.00 153 48 15 28 37 21 4
.........................................................................................TGTTGCTTGAGAATACACGTAG................................................... 22 1 1 144.00 144 136 1 4 1 2 0
............GGTGTGCACACGATTGGAAAT................................................................................................................................. 21 3 1 110.00 110 0 37 0 73 0 0
.............GTGTGCACACGATTGGAAAT................................................................................................................................. 20 2 1 97.00 97 0 18 0 79 0 0
.........................................................................................TACTGCTTGAGAATACACGTAG................................................... 22 1 1 54.00 54 51 0 1 0 2 0
........................................................................................CTATTGCTTGAGAATACACGTAG................................................... 23 1 1 53.00 53 44 7 2 0 0 0
.........................................................................................TATTGCTTGAGAATACACGTAT................................................... 22 1 1 46.00 46 3 6 18 8 11 0
.........................................................................................TATTGCTTGAGAATACACGTAGA.................................................. 23 1 1 45.00 45 7 11 10 12 4 1
...........................................................................................TTGCTTGAGAATACACGTAG................................................... 20 0 1 32.00 32 9 18 2 3 0 0
.........................................................................................TATTGCTTGAGAATACACGTAC................................................... 22 1 1 29.00 29 24 0 2 1 2 0
.........................................................................................TATCGCTTGAGAATACACGTAG................................................... 22 1 1 28.00 28 26 0 1 1 0 0
.........................................................................................TATGGCTTGAGAATACACGTAG................................................... 22 1 1 23.00 23 22 0 0 0 1 0
.............GTGTGCACACGATTGGAAATG................................................................................................................................ 21 3 2 21.50 43 0 8 0 35 0 0
.........................................................................................TATTGCTTGAGGATACACGTAG................................................... 22 1 1 18.00 18 0 13 5 0 0 0
.........................................................................................TATTGCTTGAGCATACACGTAG................................................... 22 1 1 18.00 18 0 4 1 1 12 0
.........................................................................................TATTGCTTGAGACTACACGTAG................................................... 22 1 1 18.00 18 12 0 1 0 5 0
.........................................................................................TATTGCTTGAGAATACACGTAGC.................................................. 23 1 1 18.00 18 14 1 2 0 1 0
.............GTGTGCACACGATTGGAAA.................................................................................................................................. 19 2 2 17.00 34 0 8 0 26 0 0
.........................................................................................TATTGCTTGAGAATACACGTGG................................................... 22 1 1 16.00 16 0 2 7 1 5 1
.........................................................................................TATTGCTTTAGAATACACGTAG................................................... 22 1 1 15.00 15 0 0 3 1 11 0
..................................................ACGTGTATGCTCGTAGCTATA........................................................................................... 21 0 1 15.00 15 10 0 2 0 0 3
.........................................................................................TATTGCTTGAGAATACACTTAG................................................... 22 1 1 14.00 14 8 0 1 3 2 0
.........................................................................................TTTTGCTTGAGAATACACGTAG................................................... 22 1 1 14.00 14 14 0 0 0 0 0
.........................................................................................TATTGCTTGAGAATACACG...................................................... 19 0 1 13.00 13 2 0 6 1 4 0
.........................................................................................TATTGCTTGAGAATACACGCAG................................................... 22 1 1 13.00 13 5 0 5 0 3 0
.........................................................................................TATTTCTTGAGAATACACGTAG................................................... 22 1 1 13.00 13 8 4 1 0 0 0
.........................................................................................TATTGCTTGAGAATACACGTT.................................................... 21 1 1 12.00 12 0 2 5 3 2 0
.........................................................................................CATTGCTTGAGAATACACGTAG................................................... 22 1 1 12.00 12 4 2 5 1 0 0
.........................................................................................TATAGCTTGAGAATACACGTAG................................................... 22 1 1 11.00 11 11 0 0 0 0 0
.........................................................................................TATTGCTTGAGAATACCCGTAG................................................... 22 1 1 10.00 10 1 0 3 1 4 1
.........................................................................................GATTGCTTGAGAATACACGTAG................................................... 22 1 1 10.00 10 8 1 0 1 0 0
.........................................................................................TATTGCTTGAGAATACACGTCG................................................... 22 1 1 10.00 10 0 0 2 0 8 0
........................................................................................CGATTGCTTGAGAATACACGTAG................................................... 23 2 1 9.00 9 9 0 0 0 0 0
.........................................................................................TATTGCTTGAGAATACACGTAA................................................... 22 1 1 9.00 9 1 2 4 0 2 0
.........................................................................................TAGTGCTTGAGAATACACGTAG................................................... 22 1 1 9.00 9 0 1 6 0 2 0
............GGTGTGCACACGATTGGAAA.................................................................................................................................. 20 3 8 8.38 67 0 23 0 44 0 0
.........................................................................................TATTGCTTGAGAATACACGTAGTT................................................. 24 0 1 8.00 8 1 2 1 3 0 1
..........................................................................................ATTGCTTGAGAATACACGTA.................................................... 20 0 1 8.00 8 0 7 1 0 0 0
.........................................................................................TATTGCTTGAGAATACATGTAG................................................... 22 1 1 8.00 8 0 2 0 4 2 0
........................................................................................ATATTGCTTGAGAATACACGTAG................................................... 23 1 1 8.00 8 2 6 0 0 0 0
.........................................................................................TATTGCTTGAGAATACACGAAG................................................... 22 1 1 8.00 8 3 0 5 0 0 0
.........................................................................................TATTGCTTGAGAATACACGGAG................................................... 22 1 1 7.00 7 2 1 4 0 0 0
.........................................................................................TATTGCTGGAGAATACACGTAG................................................... 22 1 1 7.00 7 0 0 6 0 1 0
............................................................................................TGCTTGAGAATACACGTAG................................................... 19 0 1 7.00 7 1 5 1 0 0 0
.........................................................................................TATTGCTTGAGAATACCCGT..................................................... 20 1 1 7.00 7 0 0 0 0 7 0
.........................................................................................TATTGCTTGGGAATACACGTAG................................................... 22 1 1 7.00 7 1 3 1 1 1 0
.........................................................................................TATTACTTGAGAATACACGTAG................................................... 22 1 1 6.00 6 2 0 4 0 0 0
.........................................................................................TATTGCTTGAGAATATACGTAG................................................... 22 1 1 6.00 6 5 0 1 0 0 0
.........................................................................................TATTGATTGAGAATACACGTAG................................................... 22 1 1 6.00 6 0 0 5 0 1 0
.........................................................................................TATTGCTTTAGAATACACGTA.................................................... 21 1 1 6.00 6 0 0 2 1 3 0
.........................................................................................TATTGCTTGATAATACACGTAG................................................... 22 1 1 6.00 6 0 0 0 0 6 0
.........................................................................................TATTGCTTGAGAATACGCGTAG................................................... 22 1 1 6.00 6 3 1 2 0 0 0
.........................................................................................TATTGCTCGAGAATACACGTAG................................................... 22 1 1 6.00 6 2 0 0 0 4 0
..............TGTGCACACGATTGGAAAT................................................................................................................................. 19 2 4 5.50 22 0 10 0 12 0 0
.......................................................................................TCTATTGCTTGAGAATACACGTAG................................................... 24 2 1 5.00 5 5 0 0 0 0 0
.........................................................................................TATTGCTTGAGAATCCACGTAG................................................... 22 1 1 5.00 5 2 0 1 1 1 0
.........................................................................................TATTGCTTGAAAATACACGTAG................................................... 22 1 1 5.00 5 1 2 1 1 0 0
........................................................................................TTATTGCTTGAGAATACACGTAG................................................... 23 0 1 5.00 5 0 4 1 0 0 0
..........................................................................................ATTGCTTGAGAATACACGT..................................................... 19 0 1 5.00 5 0 2 0 1 2 0
.........................................................................................TATTGCTTGAGAATACACGTTG................................................... 22 1 1 5.00 5 0 0 3 0 2 0
.........................................................................................TATTGCTTGAGATTACACGTAG................................................... 22 1 1 5.00 5 0 0 4 0 1 0
..........................................................................................ATTGCTTGAGAATACACGTAGT.................................................. 22 0 1 5.00 5 2 2 1 0 0 0
.........................................................................................TATTGCTTGAGAATGCACGTAG................................................... 22 1 1 5.00 5 1 0 2 0 2 0
.........................................................................................TATTGCTTTAGAATACACGT..................................................... 20 1 1 5.00 5 0 0 2 0 3 0
.........................................................................................TATTGCTTGAGCATACACGTA.................................................... 21 1 1 5.00 5 0 0 1 0 4 0
.........................................................................................TATTGCTTGAGAATACCCGTA.................................................... 21 1 1 5.00 5 0 0 0 0 5 0
.......................................................................................................................ATCCGTCGAACATGGCAAT........................ 19 3 17 4.35 74 0 54 2 17 1 0
..................................................ACCTGTATGCTCGTAGCTATAAC......................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0
.........................................................................................TATTGCCTGAGAATACACGTAG................................................... 22 1 1 4.00 4 0 0 1 1 1 1
..........................................................................................AGTGCTTGAGAATACACGTAG................................................... 21 1 1 4.00 4 4 0 0 0 0 0
.......................................................................................CCTATTGCTTGAGAATACACGTAG................................................... 24 2 1 4.00 4 4 0 0 0 0 0
..................................................ATGTGTATGCTCGTAGCTATAAC......................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0
..................................................ACGGGTATGCTCGTAGCTATAAC......................................................................................... 23 1 1 4.00 4 3 0 1 0 0 0
......................................................................................ATCTATTGCTTGAGAATACACGTAG................................................... 25 3 1 4.00 4 4 0 0 0 0 0
.........................................................................................TCTTGCTTGAGAATACACGTAG................................................... 22 1 1 4.00 4 1 1 0 0 2 0
.........................................................................................TATTGCTTGAGAATACACCTAG................................................... 22 1 1 4.00 4 0 0 2 0 1 1
..................................................ACGTGTATGCTCGTAGCTATAA.......................................................................................... 22 0 1 4.00 4 0 0 2 0 1 1
.........................................................................................TATTGCTTGAGAATACACATAG................................................... 22 1 1 4.00 4 0 0 2 1 1 0
..................................................ACGCGTATGCTCGTAGCTATAAC......................................................................................... 23 1 1 4.00 4 3 0 0 0 1 0
.........................................................................................TATTCCTTGAGAATACACGTAG................................................... 22 1 1 3.00 3 3 0 0 0 0 0
.........................................................................................TATTGCTTGAGCATACACGT..................................................... 20 1 1 3.00 3 0 0 1 0 2 0
.........................................................................................TGTTGCTTGAGAATACACGTAC................................................... 22 2 1 3.00 3 3 0 0 0 0 0
.........................................................................................TGTTGCTTGAGAATACACGTAGC.................................................. 23 2 1 3.00 3 3 0 0 0 0 0
.........................................................................................TATTGCTTGAGTATACACGTAG................................................... 22 1 1 3.00 3 1 1 0 0 1 0
.........................................................................................TATTGCTTGAGAATAAACGTAG................................................... 22 1 1 3.00 3 0 1 1 0 0 1
.........................................................................................TACTGCTTGAGAATACACGTAGT.................................................. 23 1 1 3.00 3 3 0 0 0 0 0
.........................................................................................TATTGCTTGAGAATACACGGAC................................................... 22 2 1 3.00 3 0 0 2 0 1 0
.........................................................................................TAGTGCTTGAGAATACACGTTG................................................... 22 2 1 3.00 3 0 0 1 0 2 0
.........................................................................................TATTGCTTGACAATACACGTAG................................................... 22 1 1 3.00 3 1 0 2 0 0 0
.........................................................................................TATTGCTTGAGAGTACACGTA.................................................... 21 1 1 3.00 3 0 0 2 1 0 0
.........................................................................................TATTGCTTGAGAGTACACGTAG................................................... 22 1 1 3.00 3 0 0 1 0 1 1
.........................................................................................TATTGCTTCAGAATACACGTA.................................................... 21 1 1 3.00 3 0 0 1 0 2 0
..................................................AGGTGTATGCTCGTAGCTATAAC......................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
.........................................................................................TATTGCTTGAGAACACACGTAG................................................... 22 1 1 3.00 3 0 1 1 1 0 0
.............................................................................................GCTTGAGAATACACGTAG................................................... 18 0 1 3.00 3 2 1 0 0 0 0
.........................................................................................TATTGCTAGAGAATACACGTAG................................................... 22 1 1 3.00 3 1 0 0 2 0 0
.........................................................................................TATTGTTTGAGAATACACGTAG................................................... 22 1 1 3.00 3 0 0 1 1 1 0
........................................................................................CTATTGCTTGAGAATACACGTAGT.................................................. 24 1 1 3.00 3 3 0 0 0 0 0
.........................................................................................TATTGCTTGAGAATTCACGTAG................................................... 22 1 1 3.00 3 0 0 1 2 0 0
.........................................................................................TATTGCTTGCGAATACACGTAG................................................... 22 1 1 3.00 3 0 0 2 0 1 0
.........................................................................................TATTGCTTGAGAATCCACGTA.................................................... 21 1 1 3.00 3 0 0 3 0 0 0
.............GTGTGCACACGATTGGAA................................................................................................................................... 18 2 7 2.43 17 0 14 0 3 0 0
.........................................................................................TATTGGTTGAGAATACACGTAG................................................... 22 1 1 2.00 2 1 0 1 0 0 0
.........................................................................................TATGGCTTGAGAATACACGT..................................................... 20 1 1 2.00 2 0 0 2 0 0 0
.........................................................................................TAATGCTTGAGAATACACGT..................................................... 20 1 1 2.00 2 0 1 1 0 0 0
.........................................................................................TATTGCTTGATAATACACGCAG................................................... 22 2 1 2.00 2 0 0 1 0 1 0
.........................................................................................TATTGCTTGAGAATACAAGT..................................................... 20 1 1 2.00 2 0 0 2 0 0 0
.........................................................................................TATTGCATGAGAATACACGTAG................................................... 22 1 1 2.00 2 0 1 1 0 0 0
.........................................................................................TATTGCTTGAGCATACACGTGG................................................... 22 2 1 2.00 2 0 0 2 0 0 0
.........................................................................................TATTGCTTGAGAAGACACGTAG................................................... 22 1 1 2.00 2 0 0 2 0 0 0
.........................................................................................TATTGCTTTATAATACACGTAG................................................... 22 2 1 2.00 2 0 0 1 0 1 0
.........................................................................................TATTGCTTGAGAATACACGCTG................................................... 22 2 1 2.00 2 0 0 2 0 0 0
.........................................................................................TGTTGCTTGAGAATACACGTAGT.................................................. 23 1 1 2.00 2 2 0 0 0 0 0
.........................................................................................TTTTGCTTGAGAATACACGTAGT.................................................. 23 1 1 2.00 2 2 0 0 0 0 0
........................................................................................CTATTGCTTGAGAATACACGTAC................................................... 23 2 1 2.00 2 2 0 0 0 0 0
.........................................................................................TATTGCTTGAGAATACACGCA.................................................... 21 1 1 2.00 2 0 0 1 0 1 0
.....................................................................................ATCCTATTGCTTGAGAATACACGTAG................................................... 26 2 1 2.00 2 2 0 0 0 0 0
.........................................................................................TATGGCTTGAGTATACACGTAG................................................... 22 2 1 2.00 2 0 0 1 0 1 0
.........................................................................................TATTGCTTGAGAATACAGGTAG................................................... 22 1 1 2.00 2 0 0 2 0 0 0
.........................................................................................TATTGCTTGAGAATACACGC..................................................... 20 1 1 2.00 2 1 0 1 0 0 0
.........................................................................................TATTGCTTGCGAATACACGTA.................................................... 21 1 1 2.00 2 0 0 1 0 1 0
.........................................................................................TATTGCTTGAGAATACACGTAGG.................................................. 23 1 1 2.00 2 1 1 0 0 0 0
.........................................................................................TATTGCTTGAGACTACACGTA.................................................... 21 1 1 2.00 2 0 0 2 0 0 0
.........................................................................................TACTGCTTGAGAATACACGTA.................................................... 21 1 1 2.00 2 0 0 1 0 1 0
.........................................................................................TATTGATTGAGAATACACGCAG................................................... 22 2 1 2.00 2 0 0 1 0 1 0
............................................................................................TTCTTGAGAATACACGTAG................................................... 19 1 1 2.00 2 1 0 0 1 0 0
..........................................................................................ATTGCTTGAGAATACACGTAT................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.........................................................................................TAGTGCTTGAGAATACACGTA.................................................... 21 1 1 2.00 2 0 0 2 0 0 0
...........................................................................................TATCTTGAGAATACACGTAG................................................... 20 2 1 2.00 2 1 0 0 1 0 0
.........................................................................................TATTGCTTGAGAATACCCGCAG................................................... 22 2 1 2.00 2 0 0 1 0 1 0
.........................................................................................TAATGCTTGAGAATACACGTAG................................................... 22 1 1 2.00 2 0 0 2 0 0 0
..................................................ACGTGTATGCTCGTAGCTAT............................................................................................ 20 0 1 2.00 2 0 0 1 0 1 0
.........................................................................................TATTGCTTGGGAATACACTTA.................................................... 21 2 1 2.00 2 0 0 1 0 1 0
..................................................ACGAGTATGCTCGTAGCTATAAC......................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
.........................................................................................TATTGCTTGAGAATACACGTG.................................................... 21 1 1 2.00 2 0 0 1 1 0 0
.........................................................................................TATTGCTTCAGAATACACGTAG................................................... 22 1 1 2.00 2 0 1 0 0 1 0
.........................................................................................TATTGCTTGAGAATACATGTA.................................................... 21 1 1 2.00 2 0 0 1 0 1 0
.........................................................................................TATTGCTTGTGAATACACGTAG................................................... 22 1 1 2.00 2 0 0 2 0 0 0
........................................................................................CGAATGCTTGAGAATACACGTAG................................................... 23 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCTTGAGAATACACGTAGTC................................................. 24 1 1 1.00 1 0 0 0 1 0 0
.........................................................................................TATCACTTGAGAATACACGTAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGAGAATACAAGTAT................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTTCTTGAGAATACACGT..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCGTGAGAATACACGTAG................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................AGTTCTTGAGAATACACGTAG................................................... 21 2 1 1.00 1 1 0 0 0 0 0
........................................................................................CTATCGCTTGAGAATACACGTAG................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TCTTGCTTGAGAATACACGCAG................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTCAGCATACACGT..................................................... 20 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATCGCTTTAGAATACACGTAG................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTTCTTGATAATACACGTAGC.................................................. 23 3 1 1.00 1 0 0 0 0 1 0
.........................................................................................TAGTGATTGAGAATACACGTAG................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTGAGAATCCACCTA.................................................... 21 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGAGAATACACGTATA.................................................. 23 2 1 1.00 1 0 0 0 1 0 0
......................................................................................ATATATTGCTTGAGAATACACGTAG................................................... 25 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCTTGAGAATACCCGC..................................................... 20 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGAGATTACACGTAGGT................................................. 24 2 1 1.00 1 0 0 0 0 0 1
.........................................................................................AATTGCTTGAGAATACACGTA.................................................... 21 1 1 1.00 1 0 0 1 0 0 0
........................................................................................ATCTTGCTTGAGAATACACGTAG................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCTTGCGAATTCGCGTAG................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGCAAATACACGTAGC.................................................. 23 3 1 1.00 1 0 0 0 0 1 0
........................................................................................GTATTGCTTGAGAATACACGTAG................................................... 23 1 1 1.00 1 0 1 0 0 0 0
....................................................GGGTATGCTCGTAGCTATAAC......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TGTCTTGAGAATACACGTAG................................................... 20 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCTTGAGAATAAACGTA.................................................... 21 1 1 1.00 1 0 0 1 0 0 0
........................................................................................................................TTCGTCGAACATGGCAATAGC..................... 21 3 2 1.00 2 0 1 0 0 1 0
.........................................................................................TATTGCTAGAGAATACACGT..................................................... 20 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCGTGAGACTACACGTAG................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.............................................................................................GCTTGAGAATACACGTAGT.................................................. 19 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................AATTGCTTGAGAATACACGTAG................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TTTTCCTTGAGAATACACGTAG................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................CATTGCTTGAGAATACACGCAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
........................................................................................CTATTGCTTGAGAATACACGT..................................................... 21 1 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTCCTTGAGAATACACTTAG................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCTTGAGAATACACTTA.................................................... 21 1 1 1.00 1 0 0 1 0 0 0
...........................................................................................TTGCTTGAGAATACACGT..................................................... 18 0 1 1.00 1 1 0 0 0 0 0
........................................................................................CTATTTCTTGAGAATACACGTAG................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCTTTAGAATACACGTAT................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTGAGAATACACGGAGT.................................................. 23 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................TAGTGCTTGACAATACACGTAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TCTTGCTTGAGAATACACGTA.................................................... 21 1 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTGAGGGTACACGTGG................................................... 22 3 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTGAAAATACACGTAC................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTGAGAATAAACGTAGT.................................................. 23 1 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTGAGAATATACGT..................................................... 20 1 1 1.00 1 0 0 1 0 0 0
..................................................ACGTGTATGCTCGTCGCTATAAC......................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1
.........................................................................................TTTTGCTTGAGAATACACGGAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGAGTATACTCGTAG................................................... 22 2 1 1.00 1 0 0 0 0 0 1
.........................................................................................TGTTGCTTGAGAATACACGTA.................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATGGCTTGAGCATACACCTAG................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.........................................................................................TAGTGCTTGAGACTACACGTA.................................................... 21 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGATTGAGTATACACGTAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGAGAATACACGCAT................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................ACGTGCATGCTCGTAGCTATAAC......................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGAGAATACACGTCT................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.................................................CACGTGTATGCTCGTAGCTATAA.......................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................TATTACTTGAGTATACACGT..................................................... 20 2 1 1.00 1 0 0 0 0 1 0
........................................................................................CCATTGCTTGAGAATACACGTAG................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCGTGAGCATACACTTAG................................................... 22 3 1 1.00 1 0 0 1 0 0 0
..................................................ACGTGTATGCTCATAGCTATAAC......................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTCAGAATACACGAAG................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATGGCTTGAGGATACACGTAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TTTTGCTTTAGAATACACGTAG................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATCGCTGGAGATTACACGTA.................................................... 21 3 1 1.00 1 0 0 1 0 0 0
..................................................ACGTGTATGCTCGCAGCTATCAC......................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1
.........................................................................................TATTGCTTGAGAATACGCGT..................................................... 20 1 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTGAGTATACACGTG.................................................... 21 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTAGAGACTACACGTAA................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCTTGAGCCTACACGTA.................................................... 21 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TACTGCTTGAGACTACACGTAG................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCGTGAGCAGACACGTAG................................................... 22 3 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTGAGAATACACGTC.................................................... 21 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGAGATTACACGT..................................................... 20 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGAGACTACACCTAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTACTTGAGAATACACGTA.................................................... 21 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................ATTGCTTGAGAATACACGTGG................................................... 21 1 1 1.00 1 0 1 0 0 0 0
........................................................................................CTATTGCTTGAGAATACACGTAGA.................................................. 24 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCGTGTGAATACACGTAG................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCCTGAGAATACACGT..................................................... 20 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTACTTGAGCATACACGTA.................................................... 21 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTGAGGATAAACCTAG................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGATAATACTCGTAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCGTGAGAATACACGGAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATGGCTTGAGAATACATGTAG................................................... 22 2 1 1.00 1 1 0 0 0 0 0
........................................................................................CTATTGCCTGAGAATACACGTAG................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TCATGCTTGTGAATACACGTAG................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.........................................................................................TGTTGCTTGGGAATACACGTAG................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCTTGAGAATACTCGT..................................................... 20 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................TAGTGCTTGAGACTGCACGTAG................................................... 22 3 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTCCTTGAGAATACACGTAA................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCCTGAGAATACACGTA.................................................... 21 1 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTTCTTTAGAATACACGTAG................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTGAGGGTAAACGTAG................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGCGAATACACGTCT................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.........................................................................................TGCTGCTTGAGAATACACGTAG................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................TCGTGTATGCTCGTAGCTATAAC......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCTTGAGAATACACGTAGAAA................................................ 25 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCTTGAGAATACAAGTA.................................................... 21 1 1 1.00 1 0 0 1 0 0 0
........................................................................................CTACTGCTTGAGAATACACGTAG................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................ATGTGTATGCTCTTAGCTATAAC......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCTCGAGAATACACG...................................................... 19 1 1 1.00 1 0 0 1 0 0 0
.................................................CACGTGTATGCTCGTAGCTATA........................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGGTTGAGTTTACACGTAGT.................................................. 23 3 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGAGAATAGCCGTAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTACTTGACAATACACGGAG................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.........................................................................................TAGTGCTTGAGAATACACGTAC................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.......................................................................................GACCTTGCTTGAGAATACACGTAGTT................................................. 26 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCTTGAGAATACACAAA.................................................... 21 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................GATTGCTTGAGGATACAGGTAG................................................... 22 3 1 1.00 1 0 0 1 0 0 0
..................................................ACATGCATTCTCGTAGCTATAAC......................................................................................... 23 3 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTGAGAATACTCGTAG................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TCTTGCTTGAGAATACACGT..................................................... 20 1 1 1.00 1 0 0 1 0 0 0
........................................................................................CTATTGCTTGAGAATACACGGAG................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TACTGCTTGAGCATACACGTAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGAGAATCCCCGTAG................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TGTTGCTTGAGATTACACGTAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGAGAATACACGGCG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGAGAATACTCGTA.................................................... 21 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................AGATTATTGCTTGAGAATACACGTAGC.................................................. 27 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTCCTTGAGAATACACGTC.................................................... 21 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTGCGGATACACGTAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGGGAATGCACGTA.................................................... 21 2 1 1.00 1 0 0 1 0 0 0
..................................................ACGTGTATACTCATAGCTATAAC......................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCTTGAGGATACACGCAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGAGTATACACGCAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTAAGAATACACGTAG................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................ACGTGTATGATCGTAGCTATAAC......................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGAGAATACATGCA.................................................... 21 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TAGTGGTTGAGATTACACGTAGT.................................................. 23 3 1 1.00 1 0 0 1 0 0 0
.........................................................................................TCTTGCTTGAGACTACACGTAGT.................................................. 23 2 1 1.00 1 0 0 1 0 0 0
........................................................................................ATATTGCTTGAGAATACACGTA.................................................... 22 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................TATTGCTTGAGAATACACGTAAA.................................................. 23 2 1 1.00 1 0 0 0 1 0 0
.........................................................................................TTGTGCGTGAGAATACACGTAG................................................... 22 3 1 1.00 1 0 0 1 0 0 0
........................................................................................CTATTGCTTGAGAATACACGTCG................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TGTTGCTTGAGAATATACGTAG................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCTTGAGAATACACGTCA................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................CTTTGCTTGAGAATACACGTAG................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................AGTGCTTGAGAATACACGTAGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGATTGAGAATACACGCCG................................................... 22 3 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTGCGCATACACGTA.................................................... 21 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATCGCTTGAGAATACACGTAT................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTGGAGAATACCCGTAT................................................... 22 3 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTGAGAATTCACGT..................................................... 20 1 1 1.00 1 0 0 0 1 0 0
.........................................................................................TATTCCTTGAGCATACACGTAA................................................... 22 3 1 1.00 1 0 0 1 0 0 0
.........................................................................................TAGTGCTTGAGAATACGCGTA.................................................... 21 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................CTTGCTTGAGAATACACGTAG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCTTGATAATACACTTAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGAGAGTACACGGAG................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGAGAATACACCTA.................................................... 21 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGAGAATACACTT..................................................... 20 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................TATTGCTTGCGAATACACGTCG................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TAGTGCTGGAGAATACACGTAG................................................... 22 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCGTGAGAATACACGGA.................................................... 21 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTGAGAATACACGTATT.................................................. 23 1 1 1.00 1 0 0 0 0 1 0
.........................................................................................TTTTGCTTGAGAATCCACGTAG................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................TATTGCTGGAGAATACACGTT.................................................... 21 2 1 1.00 1 0 0 0 0 1 0
.........................................................................................TATTGCTTTAGTATACACGTA.................................................... 21 2 1 1.00 1 0 0 1 0 0 0

Anti-sense strand reads

TCACCAGTTGCCTCACACCTGTGTTAACCTTTAACCTTAGCCGTTACCGGTGCACATACGAGCATCGATATTGACCATGTTAGTTTACAATAACGAACTCTTATGTGCATCAATCGGTCTAAGCGGGTTGTACCGTTACCGTTGTAGTTAATAAATGGAGCG

************************************((((((((..((((.((((((((.((((.(((.(((((((((...))))...))))).))))))).)))))))).))))))).)))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 V110

male body		 V056

head

 V049

head
..........................................................................................................................GCAGCTTGTACCGTTATCGTT................... 21 3 6 4.33 26 16 8 2 0
.......................................................................................................................TAGGCAGCTTGTACCGTTA........................ 19 3 17 2.47 42 26 12 3 1
.......................................................................................................................TAAGCAGCTTGTACCGTTA........................ 19 2 2 1.00 2 2 0 0 0
.........................................................................................................................AGCAGCTTGTACCGTTATCGTT................... 22 3 2 1.00 2 2 0 0 0
..........................................................................................................................GCAGCTTGTACCGTTATCGT.................... 20 3 15 0.80 12 12 0 0 0
.........................................................................................................................AGCAGCTTGTACCGTTATCGT.................... 21 3 3 0.67 2 1 0 0 1
....................................................................................................................GTTTAAGCAGCTTGTACCGTT......................... 21 3 6 0.17 1 0 0 1 0
......................................................................................................................TTAAGCAGCTTGTACCGTTA........................ 20 3 15 0.07 1 1 0 0 0
.............................................................................................................................GCTTGTACCGTTATCGTT................... 18 2 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6496:10610026-10610187 + dmo_25 confident -A-GTG----------GTCAACGG-----------------AGTG----------------TGGACA----CAATTGGAAA-----------TTGGAATCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTT-AGCCAGATTCGCCCAACATGGC-AAT--------------------------------------GGCAACATCAATTATTTACCTCGC
droVir3 scaffold_10468:1947-2118 - dvi-mir-137 Known_mirbase -A-GTG---AAGCAGGGATTAAGGTACGTCGGAGCAGACACGACAG---------------CGGACACAA-CAATTGGAAA-----------TTGGAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTCTCTCAACGATCC-AATAA---------------------------AAA-----------C------------------
droGri2 scaffold_15245:16918421-16918608 - dgr_35 candidate-rescued -A---G------CA--GAGGAGATT----------------GGAA----------------------------------AA-----------TTAAAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTGCCTCAACGACTCCAATAACTCAACGAATACTGCTGCCTGAATAGAAAACTCAATCGAAAGATCAATTATTTACTTTGG
droWil2 scf2_1100000004954:1110997-1111090 - dwi_38 confident -------------------------------------------------------------------------------------------------------AATGGCCACGTGTATTCTTATAGCTGTAACCTGTTAT--ACAAAATGTTATTGCTTGAGAATACACGTAGTTA-ACTAGATTCGTTCAACGGGTC-AA---------------------------------------------------------------
dp5 3:16385899-16386030 - dps-mir-137 Known_mirbase -T---G------------------------------------ACAGCGACGGCC-----AA-------GGC-------AATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGATAT--CC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCA----------------------------------------------------------------------
droPer2 scaffold_4:376922-377070 + dpe_44 confident -A---------GTG--GATTAAGAT----------------GACAGCGACGGCCACGCCAC-------GGC-------AATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGATAT--CC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCA----------------------------------------------------------------------
droAna3 scaffold_13266:15447211-15447335 + dan_23 confident -G--TGG-CAAGTG--GATTAAAGT----------------GGCA----------------------------------AC-----------CTGGAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAAAT--GCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCA----------------------------------------------------------------------
droBip1 scf7180000396547:1600315-1600436 - -----GC-CAAGTG--GATTAAAGT----------------GGCA----------------------------------AT-----------CTGAAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGATGT--GC-GAATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCA----------------------------------------------------------------------
droKik1 scf7180000302476:2644190-2644285 - ------------------------------------------------------------------------------------------------AATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATAT--CCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTCGTTCATCA----------------------------------------------------------------------
droFic1 scf7180000453948:1198625-1198730 - -A-GTG------------------------------------GCAG---------------AA-------------------------------GCTATCTCCAATGGCCACGTGTATGCTCGTAGCTATAGCCTGATAT--CC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCA----------------------------------------------------------------------
droEle1 scf7180000491107:959935-960056 - -C---GCACAAGTG--GATTAAAGT----------------GGCGA---------------CG-------------------------------GCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATAT--CC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCA----------------------------------------------------------------------
droRho1 scf7180000779911:146891-147022 + -ATGCGC-CAAGTG--GATTAAAGT----------------GGCGA---------------CG-------------------------------GCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATAT--CC--AATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAAT------GA---------------------------AAC-----------G------------------
droBia1 scf7180000301506:2893878-2894011 - -T-GTGC-CAAGTG--GATTAAAGT----------------GGCC----------------------------------ATCTCAACCGCAGC-CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATAT--CC--AATGTTATTGCTTGAGAATACACGTAGTTCCACGAGATTTGCCCAGCA----------------------------------------------------------------------
droTak1 scf7180000415795:609477-609598 + -A---------GTG--GATCAACGT----------------GGCGA---------------CGGCC-------------AC-----------C-TCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATAT--CC--GATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCA----------------------------------------------------------------------
droEug1 scf7180000409672:857350-857456 - -A-ATG----------G-------------------------TCGA---------------CG-------------------------------GCAATCTCCAATGGCCACGTGTATACTCGTAGCGATAACCTGATAT--CC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCA----------------------------------------------------------------------
dm3 chr2R:11952754-11952870 - dme-mir-137 Known_mirbase -A---------GTG--GATTACGAT----------------GGCGT---------------CG-------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAAT--CC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCA----------------------------------------------------------------------
droSim2 2r:12622841-12622945 - dsi-mir-137 Known_mirbase -T---G------------------------------------GCGT---------------CG-------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAAT--CC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCA----------------------------------------------------------------------
droSec2 scaffold_1:9448882-9448986 - dse_23 confident -T---G------------------------------------GCGT---------------CG-------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAAT--CC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCA----------------------------------------------------------------------
droYak3 2R:17032212-17032315 + dya_26 confident CA---------GT-------------------------------TA---------------AC-------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACAT--CC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCA----------------------------------------------------------------------
droEre2 scaffold_4845:13905041-13905157 + der_26 confident CA---------GTG--GATTACGGT----------------GGCGA---------------CT-------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACAT--CC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCA----------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
-A-GTG----------GTCAACGG-----------------AGTG----------------TGGACA----CAATTGGAAA-----------TTGGAATCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTT-AGCCAGATTCGCCCAACATGGC-AAT--------------------------------------GGCAACATCAATTATTTACCTCGCSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.......................................................................................................................................................TATTGCTTGAGAATACACGTAG...........................................................................................2218045.008045231813480016542187952
.......................................................................................................................................................TATTGCTTGAGAATACACGTA............................................................................................211796.0079670018937818141
.......................................................................................................................................................TATTGCTTGAGAATACACGT.............................................................................................201399.0039942086192970
..............................................................................................................ACGTGTATGCTCGTAGCTATAAC...................................................................................................................................231223.0022352012201633
........................................................................................................................................................ATTGCTTGAGAATACACGTAG...........................................................................................211207.002071390710492
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGT..........................................................................................231153.0015315421284837
.......................................................................................................................................................TATTGCTTGAGAATACACGTAT...........................................................................................22146.004660111838
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGA..........................................................................................23145.0045111410712
.........................................................................................................................................................TTGCTTGAGAATACACGTAG...........................................................................................20132.00321800293
.......................................................................................................................................................TATTGCTTGAGAATACACGTAC...........................................................................................22129.00290022241
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGC..........................................................................................23118.00181012140
..............................................................................................................ACGTGTATGCTCGTAGCTATA.....................................................................................................................................21115.00150302100
.......................................................................................................................................................TATTGCTTGAGAATACACG..............................................................................................19113.0013004621
.......................................................................................................................................................TATTGCTTGAGAATACACGTT............................................................................................21112.0012202503
.......................................................................................................................................................TATTGCTTGAGAATACACGTAA...........................................................................................2219.009202410
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGTT-........................................................................................2418.008210113
........................................................................................................................................................ATTGCTTGAGAATACACGTA............................................................................................2018.008700100
..........................................................................................................................................................TGCTTGAGAATACACGTAG...........................................................................................1917.007500110
......................................................................................................................................................TTATTGCTTGAGAATACACGTAG...........................................................................................2315.005400100
........................................................................................................................................................ATTGCTTGAGAATACACGT.............................................................................................1915.005202001
........................................................................................................................................................ATTGCTTGAGAATACACGTAGT..........................................................................................2215.005200120
..............................................................................................................ACGTGTATGCTCGTAGCTATAA....................................................................................................................................2214.004011200
...........................................................................................................................................................GCTTGAGAATACACGTAG...........................................................................................1813.003100020
.......................................................................................................................................................TATTGCTTGAGAATACACGC.............................................................................................2012.002000110
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGG..........................................................................................2312.002100010
........................................................................................................................................................ATTGCTTGAGAATACACGTAT...........................................................................................2112.002000020
..............................................................................................................ACGTGTATGCTCGTAGCTAT......................................................................................................................................2012.002001100
.......................................................................................................................................................TATTGCTTGAGAATACACGTG............................................................................................2112.002000101
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGTC-........................................................................................2411.001000001
.......................................................................................................................................................TATTGCTTGAGAATACACGTATA..........................................................................................2311.001000001
...........................................................................................................................................................GCTTGAGAATACACGTAGT..........................................................................................1911.001100000
.........................................................................................................................................................TTGCTTGAGAATACACGT.............................................................................................1811.001000010
.......................................................................................................................................................TATTGCTTGAGAATACACGTCT...........................................................................................2211.001000100
.............................................................................................................CACGTGTATGCTCGTAGCTATAA....................................................................................................................................2311.001100000
.......................................................................................................................................................TATTGCTTGAGAATACACGTC............................................................................................2111.001000100
.............................................................................................................CACGTGTATGCTCGTAGCTATA.....................................................................................................................................2211.001000010
.......................................................................................................................................................TATTGCTTGAGAATACACGTAAA..........................................................................................2311.001000001
.......................................................................................................................................................TATTGCTTGAGAATACACGTCA...........................................................................................2211.001001000
droVir3
-A-GTG---AAGCAGGGATTAAGGTACGTCGGAGCAGACACGACAG---------------CGGACACAA-CAATTGGAAA-----------TTGGAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTCTCTCAACGATCC-AATAA---------------------------AAA-----------C------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................................................................................................................TATTGCTTGAGAATACACGTAG...........................................................................................2213284.003284357652179112103000017812354134916212601406305235342041060001020133000000000100211552118601353020201680152170418143863
.......................................................................................................................................................TATTGCTTGAGAATACACGTA............................................................................................211867.0086702436010000000069402750522704737000002304020001020100000000000000001113548300200000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGT.............................................................................................201414.004140323003000000002616192033182342011000041000000000000000000000000011001632300000002000000000
.......................................................................................................................................................TATTGCTTGAGAATACACG..............................................................................................191126.00126387100000010000010000001000000010000000000000000000000000019051000000014010000000
..............................................................................................................ACGTGTATGCTCGTAGCTATAAC...................................................................................................................................23182.00823171130000000000603332011000001000000000000000000000000000006515100000000000010000
........................................................................................................................................................ATTGCTTGAGAATACACGTAG...........................................................................................21179.0079005540000000000211210000000001000000000000000000000000000000111000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGT..........................................................................................23147.0047004400000000002101330220000001000100000000000000000000000001111100000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAA...........................................................................................22136.00360000000000000043314303400000001100000000000000000000000000009000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGA..........................................................................................23133.00330225000000000022021000100000020000000000000000000000000000202100000000000002034
.......................................................................................................................................................TATTGCTTGAGAATACACGTAT...........................................................................................22120.00200000010000000021021210000000100000000000000000000000000000015300000000000000000
..............................................................................................................ACGTGTATGCTCGTAGCTATAACCTGTACAATC--AAATG..................................................................................................................38116.00160000000000000000000000000000000000000000000000000000000403900000000000000000000
........................................................................................................................................................ATTGCTTGAGAATACACGTAGT..........................................................................................22114.00140011000000000010011000100000100100000000000000000000000000005100000000000000000
......................................................................................................................................................TTATTGCTTGAGAATACACGTAG...........................................................................................23112.00120020000000000031001101100000000000000000000000000000000000002000000000000000000
.............................................................................................................CACGTGTATGCTCGTAGCTATAA....................................................................................................................................23110.00100001000000000032010000200000001000000000000000000000000000000000000000000000000
........................................................................................................................................................ATTGCTTGAGAATACACGTA............................................................................................20110.00100060000000000000010100000000000000000000000000000000000000001100000000000000000
.............................................................................................................CACGTGTATGCTCGTAGCT........................................................................................................................................19110.00100200000000000000112000000000000000000000000000000000000000004000000000000000000
..............................................................................................................ACGTGTATGCTCGTAGCTATA.....................................................................................................................................2119.0090001000000000001001021200000000100000000000000000000000000000000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAC...........................................................................................2218.0080001000000000000011000000000000000000000000000000000000000005000000000000000000
.............................................................................................................CACGTGTATGCTCGTAGCTAT......................................................................................................................................2117.0070010000000000002001001000000000000000000000000000000000000002000000000000000000
..............................................................................................................ACGTGTATGCTCGTAGCTATAA....................................................................................................................................2216.0060000000000000010012000000000000100000000000000000000000000001000000000000000000
...........................................................................................................................................................GCTTGAGAATACACGTAG...........................................................................................1815.0050021000000000010000000010000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTT............................................................................................2115.0050000000000000000100000000000000000000000000000000000000000003100000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGC.............................................................................................2015.0050000000000000000000000000000000000000000000000000000000000005000000000000000000
........................................................................................................................................................ATTGCTTGAGAATACACGT.............................................................................................1914.0040020000000000000000000000000000000000000000000000000000000002000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGC..........................................................................................2314.0040000000000000000000000000000000000000000000000000000000000013000000000000000000
..............................................................................................................ACGTGTATGCTCGTAGCTAT......................................................................................................................................2014.0040010000000000010000000000000000000000000000000000000000000002000000000000000000
..............................................................................................................ACGTGTATGCTCGTAGCTATAACCTGTACAATC--AAATGT.................................................................................................................3913.0030000000000000000000000000000000000000000000000000000010000200000000000000000000
.........................................................................................................................................................TTGCTTGAGAATACACGTAG...........................................................................................2013.0030010000000000000000000100000000000000000000000000000000000000100000000000000000
.............................................................................................................CACGTGTATGCTCGTAGCTATAAA...................................................................................................................................2413.0030100000000000011000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CACGTGTATGCTCGTAGCTATA.....................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000002000000001000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTC............................................................................................2113.0030000000000000000101000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................................................TGCTTGAGAATACACGTAG...........................................................................................1912.0020001000000000000100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................ACGTGTATGCTCGTAGCTA.......................................................................................................................................1912.0020000000000000000000000000000010000000000000000000000000000001000000000000000000
.........................................................................................................................................................TTGCTTGAGAATACACGT.............................................................................................1812.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TTATTGCTTGAGAATACACGT.............................................................................................2112.0020000000000000010010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CACGTGTATGCTCGTAGCC........................................................................................................................................1912.0021100000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................ACGTGTATGCTCGTAGCTATAACC..................................................................................................................................2412.0020000000000000000000000000000200000000000000000000000000000000000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGG..........................................................................................2312.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGTA.........................................................................................2411.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
.............................................................................................................CACGTGTATGCTCGTAGCTATC.....................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................................................................ACGTGTATGCTCGTAGCTATC.....................................................................................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGG.............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................................................................ACGTGTATGCTCGTAGCT........................................................................................................................................1811.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................ATTGCTTGAGAATACACGTAGTTT-T......................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACC..............................................................................................1911.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................................................................................................ATTGCTTGAGAATACACGTAGA..........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000001
.............................................................................................................CACGTGTATGCTCGTAGCTA.......................................................................................................................................2011.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CACGTGTATGCTCGTAGCTATAC....................................................................................................................................2311.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................ATTGCTTGAGAATACACGTAGC..........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTCCC..........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTCA...........................................................................................2211.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TTATTGCTTGAGAATACACGTA............................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................................................................................................................................TGCTTGAGAATACACGTA............................................................................................1811.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGCCC...........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................................................................................................ATTGCTTGAGAATACACGTT............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................................................................................................CACGTGTATGCTCGTAGCTATAAAAA.................................................................................................................................2611.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGA.............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................................................................ACGTGTATGCTCGTAGCTATT.....................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGAA.........................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TTGCTTGAGAATACACGTAGT..........................................................................................2111.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................GCTTGAGAATACACGTAGTAT-T......................................................................................2230.3310000000000000010000000000000000000000000000000000000000000000000000000000000000
droGri2
-A---G------CA--GAGGAGATT----------------GGAA----------------------------------AA-----------TTAAAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTGCCTCAACGACTCCAATAACTCAACGAATACTGCTGCCTGAATAGAAAACTCAATCGAAAGATCAATTATTTACTTTGGSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.......................................................................................................................................................TATTGCTTGAGAATACACGTAG...........................................................................................221175.0017512946
.......................................................................................................................................................TATTGCTTGAGAATACACGTA............................................................................................21118.0018612
.......................................................................................................................................................TATTGCTTGAGAATACACGT.............................................................................................20112.001266
........................................................................................................................................................ATTGCTTGAGAATACACGTAG...........................................................................................2118.00880
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGT..........................................................................................2313.00321
.........................................................................................................................................................TTGCTTGAGAATACACGTAG...........................................................................................2013.00330
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGA..........................................................................................2312.00211
...............................................................................................................CGTGTATGCTCGTAGCTATAAC...................................................................................................................................2211.00110
........................................................................................................................................................ATTGCTTGAGAATACACGTAGT..........................................................................................2211.00110
..............................................................................................................ACGTGTATGCTCGTAGCTATAAC...................................................................................................................................2311.00110
droWil2
-------------------------------------------------------------------------------------------------------AATGGCCACGTGTATTCTTATAGCTGTAACCTGTTAT--ACAAAATGTTATTGCTTGAGAATACACGTAGTTA-ACTAGATTCGTTCAACGGGTC-AA---------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.......................................................................................................................................................TATTGCTTGAGAATACACGTAG...........................................................................................2214067.00406713843017814041917
.......................................................................................................................................................TATTGCTTGAGAATACACGTA............................................................................................211375.003751222368261
.......................................................................................................................................................TATTGCTTGAGAATACACG..............................................................................................191306.003063020004
..............................................................................................................ACGTGTATTCTTATAGCTGTAAC...................................................................................................................................231135.001359911286
.......................................................................................................................................................TATTGCTTGAGAATACACGT.............................................................................................201109.0010921416572
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGT..........................................................................................23149.0049125329
........................................................................................................................................................ATTGCTTGAGAATACACGTAG...........................................................................................21132.0032024017
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGA..........................................................................................23119.001912484
......................................................................................................................................................TTATTGCTTGAGAATACACGTAG...........................................................................................23115.0015020211
..............................................................................................................ACGTGTATTCTTATAGCTGTA.....................................................................................................................................21114.0014120011
.......................................................................................................................................................TATTGCTTGAGAATACACGTAA...........................................................................................22112.001212009
..............................................................................................................ACGTGTATTCTTATAGCTGTAA....................................................................................................................................2219.00970011
.......................................................................................................................................................TATTGCTTGAGAATACACGTAC...........................................................................................2217.00701123
.........................................................................................................................................................TTGCTTGAGAATACACGTAG...........................................................................................2016.00602004
..............................................................................................................ACGTGTATTCTTATAGCTGT......................................................................................................................................2015.00550000
..............................................................................................................ACGTGTATTCTTATAGCTG.......................................................................................................................................1914.00440000
.......................................................................................................................................................TATTGCTTGAGAATACACGTG............................................................................................2114.00400103
......................................................................................................................................................TTATTGCTTGAGAATACACGTA............................................................................................2214.00400013
.........................................................................................................................................................TTGCTTGAGAATACACGTAGTT.........................................................................................2213.00300003
......................................................................................................................................................TTATTGCTTGAGAATACACG..............................................................................................2013.00330000
..............................................................................................................ACGTGTATTCTTATAGCTGTAACC..................................................................................................................................2413.00330000
.........................................................................................................................................................TTGCTTGAGAATACACGTAGTTT-.......................................................................................2312.00200011
..........................................................................................................................................................TGCTTGAGAATACACGTAG...........................................................................................1912.00200011
.......................................................................................................................................................TATTGCTTGAGAATACACGG.............................................................................................2012.00220000
.............................................................................................................CACGTGTATTCTTATAGCTGTAA....................................................................................................................................2312.00220000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAT...........................................................................................2212.00200011
........................................................................................................................TTATAGCTGTAACCTGTTAT--..........................................................................................................................2011.00110000
........................................................................................................................................................ATTGCTTGAGAATACACGTA............................................................................................2011.00100010
.......................................................................................................................................................TATTGCTTGAGAATACACGTC............................................................................................2111.00100010
.........................................................................................................................................................TTGCTTGAGAATACACGTAGT..........................................................................................2111.00101000
..............................................................................................................ACGTGTATTCTTATAGCTGTAACCT.................................................................................................................................2511.00110000
.......................................................................................................................................................TATTGCTTGAGAATACAC...............................................................................................1811.00100010
..............................................................................................................ACGTGTATTCTTATAGCTGC......................................................................................................................................2011.00110000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGAA.........................................................................................2411.00100010
........................................................................................................................................................ATTGCTTGAGAATACACGTAGA..........................................................................................2211.00101000
.......................................................................................................................................................TATTGCTTGAGAATACACGTT............................................................................................2111.00100001
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGC..........................................................................................2311.00100001
......................................................................................................................................................TTATTGCTTGAGAATACACGT.............................................................................................2111.00100001
.......................................................................................................................................................TATTGCTTGAGAATACACGTGT...........................................................................................2211.00100001
...........................................................................................................................................................GCTTGAGAATACACGTAG...........................................................................................1811.00100010
..........................................................................................................................................................TGCTTGAGAATACACGTAGG..........................................................................................2011.00101000
.......................................................................................................................................................TATTGCTTGAGAATACACGTCC...........................................................................................2211.00100010
........................................................................................................................................................ATTGCTTGAGAATACACGTAGT..........................................................................................2211.00100010
.........................................................................................................................................................TTGCTTGAGAATACACGTA............................................................................................1911.00100001
.......................................................................................................................................................TATTGCTTGAGAATACACTAG............................................................................................2150.20100001
dp5
-T---G------------------------------------ACAGCGACGGCC-----AA-------GGC-------AATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGATAT--CC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCA----------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.......................................................................................................................................................TATTGCTTGAGAATACACGTAG...........................................................................................2214840.0048401157882635343776734074527
.......................................................................................................................................................TATTGCTTGAGAATACACGTA............................................................................................211267.0026704811211412547001
..............................................................................................................ACGTGTATACTCATAGCTATAAC...................................................................................................................................231204.002040796148250000
........................................................................................................................................................ATTGCTTGAGAATACACGTAG...........................................................................................211111.00111082105252005
.......................................................................................................................................................TATTGCTTGAGAATACACGT.............................................................................................20191.0091092716012000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGT..........................................................................................23177.0077013149111614000
........................................................................................................................................................ATTGCTTGAGAATACACGTAGT..........................................................................................22160.00600171745141002
........................................................................................................................................................ATTGCTTGAGAATACACGTA............................................................................................20142.0042017050146000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAC...........................................................................................22132.003202245010000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGA..........................................................................................23123.00230327220007
.............................................................................................................CACGTGTATACTCATAGCTATAA....................................................................................................................................23116.00160201823000
......................................................................................................................................................TTATTGCTTGAGAATACACGTAG...........................................................................................23113.00130531000004
.........................................................................................................................................................TTGCTTGAGAATACACGTAG...........................................................................................20111.00110331021001
........................................................................................................................................................ATTGCTTGAGAATACACGT.............................................................................................19110.00100101071000
..............................................................................................................ACGTGTATACTCATAGCTATA.....................................................................................................................................21110.00100111320020
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGC..........................................................................................2319.0090032220000
.............................................................................................................CACGTGTATACTCATAGCTATA.....................................................................................................................................2219.0090212400000
........................................................................................................................................................ATTGCTTGAGAATACACGTAGC..........................................................................................2217.0070061000000
.......................................................................................................................................................TATTGCTTGAGAATACACG..............................................................................................1917.0071120030000
..............................................................................................................ACGTGTATACTCATAGCTATAA....................................................................................................................................2217.0070200410000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAT...........................................................................................2216.0060100032000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAA...........................................................................................2215.0050310100000
.........................................................................................................................................................TTGCTTGAGAATACACGTAGT..........................................................................................2114.0040300010000
.........................................................................................................................................................TTGCTTGAGAATACACGTAGTT.........................................................................................2214.0040000112000
...........................................................................................................................................................GCTTGAGAATACACGTAG...........................................................................................1814.0040300100000
........................................................................................................................................................ATTGCTTGAGAATACACGTAGA..........................................................................................2213.0030300000000
......................................................................................................................................................TTATTGCTTGAGAATACACGT.............................................................................................2113.0030001020000
.............................................................................................................CACGTGTATACTCATAGCTATAAC...................................................................................................................................2413.0030021000000
.............................................................................................................CACGTGTATACTCATAGCTAT......................................................................................................................................2112.0020200000000
..............................................................................................................ACGTGTATACTCATAGCTATAACA..................................................................................................................................2412.0020020000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTT............................................................................................2112.0020000002000
..........................................................................................................................................................TGCTTGAGAATACACGTAG...........................................................................................1912.0020101000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGTT.........................................................................................2412.0020000002000
........................................................................................................................................................ATTGCTTGAGAATACACG..............................................................................................1811.0010100000000
.........................................................................................................................................................TTGCTTGAGAATACACGTAGC..........................................................................................2111.0010001000000
.........................................................................................................................................................TTGCTTGAGAATACACGTA............................................................................................1911.0010100000000
........................................................................................................................................................ATTGCTTGAGAATACACGTAGTA.........................................................................................2311.0010000001000
.......................................................................................................................................................TATTGCTTGAGAATACACGTACA..........................................................................................2311.0010000010000
..............................................................................................................ACGTGTATACTCATAGCTAT......................................................................................................................................2011.0010000010000
.........................................................................................................................................................TTGCTTGAGAATACACGTAGTA.........................................................................................2211.0010000010000
..............................................................................................................ACGTGTATACTCATAGCTA.......................................................................................................................................1911.0010000100000
........................................................................................................................................................ATTGCTTGAGAATACACGTAA...........................................................................................2111.0010100000000
........................................................................................................................................................ATTGCTTGAGAATACACGTAGTT.........................................................................................2311.0010000010000
.......................................................................................................................................................TATTGCTTGAGAATACACGCT............................................................................................2111.0010000010000
........................................................................................................................................................ATTGCTTGAGAATACACGTT............................................................................................2011.0010000001000
.......................................................................................................................................................TATTGCTTGAGAATACACGC.............................................................................................2011.0010001000000
....................................................................................................................................................TGTTATTGCTTGAGAATACACGTAG...........................................................................................2511.0010100000000
droPer2
-A---------GTG--GATTAAGAT----------------GACAGCGACGGCCACGCCAC-------GGC-------AATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGATAT--CC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCA----------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.......................................................................................................................................................TATTGCTTGAGAATACACGTAG...........................................................................................2212043.0020432422089638770302
.......................................................................................................................................................TATTGCTTGAGAATACACGTA............................................................................................211375.0037505214720120
.......................................................................................................................................................TATTGCTTGAGAATACACGT.............................................................................................201163.0016302264887
.......................................................................................................................................................TATTGCTTGAGAATACACG..............................................................................................19166.00666200130
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGT..........................................................................................23153.0053001192211
........................................................................................................................................................ATTGCTTGAGAATACACGTA............................................................................................20136.003600016182
........................................................................................................................................................ATTGCTTGAGAATACACGTAGT..........................................................................................22121.00210401250
........................................................................................................................................................ATTGCTTGAGAATACACGT.............................................................................................19120.00200007130
........................................................................................................................................................ATTGCTTGAGAATACACGTAG...........................................................................................21120.0020071480
.............................................................................................................CACGTGTATACTCATAGCTATAA....................................................................................................................................23116.0016301570
..............................................................................................................ACGTGTATACTCATAGCTATAAC...................................................................................................................................23116.0016905200
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGA..........................................................................................23114.0014020651
.......................................................................................................................................................TATTGCTTGAGAATACACGTAA...........................................................................................2218.008000530
.......................................................................................................................................................TATTGCTTGAGAATACACGTAT...........................................................................................2218.008010160
......................................................................................................................................................TTATTGCTTGAGAATACACGTAG...........................................................................................2318.008000071
.......................................................................................................................................................TATTGCTTGAGAATACACGTAC...........................................................................................2217.007001420
.............................................................................................................CACGTGTATACTCATAGCTAT......................................................................................................................................2116.006000240
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGC..........................................................................................2315.005011120
.............................................................................................................CACGTGTATACTCATAGCTATA.....................................................................................................................................2214.004002110
.........................................................................................................................................................TTGCTTGAGAATACACGTAG...........................................................................................2014.004011020
.............................................................................................................CACGTGTATACTCATAGCT........................................................................................................................................1913.003000030
........................................................................................................................................................ATTGCTTGAGAATACACGTT............................................................................................2013.003000030
.........................................................................................................................................................TTGCTTGAGAATACACGTAGTT.........................................................................................2213.003000300
..........................................................................................................................................................TGCTTGAGAATACACGTAG...........................................................................................1912.002010001
........................................................................................................................................................ATTGCTTGAGAATACACGTAGTT.........................................................................................2312.002000020
........................................................................................................................................................ATTGCTTGAGAATACACG..............................................................................................1812.002000200
.......................................................................................................................................................TATTGCTTGAGAATACACGTGT...........................................................................................2212.002000020
..............................................................................................................ACGTGTATACTCATAGCTATAA....................................................................................................................................2212.002010100
......................................................................................................................................................TTATTGCTTGAGAATACACGT.............................................................................................2112.002000110
.........................................................................................................................................................TTGCTTGAGAATACACGTAGT..........................................................................................2112.002000020
.......................................................................................................................................................TATTGCTTGAGAATACACGTT............................................................................................2111.001000010
........................................................................................................................................................ATTGCTTGAGAATACACGTAGG..........................................................................................2211.001000010
.......................................................................................................................................................TATTGCTTGAGAATACACGTTA...........................................................................................2211.001000010
........................................................................................................................................................ATTGCTTGAGAATACACGCC............................................................................................2011.001000010
..............................................................................................................ACGTGTATACTCATAGCTATA.....................................................................................................................................2111.001100000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGTT.........................................................................................2411.001000010
.........................................................................................................................................................TTGCTTGAGAATACACGTAGAA.........................................................................................2211.001000010
.........................................................................................................................................................TTGCTTGAGAATACACGTAGA..........................................................................................2111.001000010
.......................................................................................................................................................TATTGCTTGAGAATACACGTG............................................................................................2111.001000100
........................................................................................................................................................ATTGCTTGAGAATACACGTAA...........................................................................................2111.001000100
.......................................................................................................................................................TATTGCTTGAGAATACACGTTT...........................................................................................2211.001000010
.............................................................................................................CACGTGTATACTCATAGCTATAAT...................................................................................................................................2411.001000010
.......................................................................................................................................................TATTGCTTGAGAATACACGTC............................................................................................2111.001000010
.......................................................................................................................................................TATTGCTTGAGAATACACGTATC..........................................................................................2311.001000010
......................................................................................................................................................TTATTGCTTGAGAATACACG..............................................................................................2011.001000010
.........................................................................................................................................................TTGCTTGAGAATACACGT.............................................................................................1811.001010000
..............................................................................................................ACGTGTATACTCATAGCT........................................................................................................................................1811.001100000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGGGA........................................................................................2511.001010000
..............................................................................................................ACGTGTATACTCATAGCTAT......................................................................................................................................2011.001000100
droAna3
-G--TGG-CAAGTG--GATTAAAGT----------------GGCA----------------------------------AC-----------CTGGAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAAAT--GCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCA----------------------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.......................................................................................................................................................TATTGCTTGAGAATACACGTAG...........................................................................................2213316.003316386452406375121289
.......................................................................................................................................................TATTGCTTGAGAATACACGTA............................................................................................211436.00436810211785214
.......................................................................................................................................................TATTGCTTGAGAATACACGT.............................................................................................201198.00198430635078
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGT..........................................................................................231123.001233163183845
..............................................................................................................ACGTGTATGCTCGTAGCTATAAC...................................................................................................................................23180.008032724242
........................................................................................................................................................ATTGCTTGAGAATACACGTAG...........................................................................................21173.0073236014624
.......................................................................................................................................................TATTGCTTGAGAATACACGTAT...........................................................................................22142.004210171023
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGA..........................................................................................23131.00316119212
........................................................................................................................................................ATTGCTTGAGAATACACGT.............................................................................................19113.0013200227
.......................................................................................................................................................TATTGCTTGAGAATACACGTT............................................................................................21111.0011000218
.......................................................................................................................................................TATTGCTTGAGAATACACG..............................................................................................1919.009020322
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGC..........................................................................................2318.008040310
......................................................................................................................................................TTATTGCTTGAGAATACACGT.............................................................................................2118.008000332
......................................................................................................................................................TTATTGCTTGAGAATACACGTAG...........................................................................................2318.008220103
.......................................................................................................................................................TATTGCTTGAGAATACACGTAA...........................................................................................2218.008100214
..............................................................................................................ACGTGTATGCTCGTAGCTATA.....................................................................................................................................2116.006011103
.......................................................................................................................................................TATTGCTTGAGAATACACGTAC...........................................................................................2215.005030101
..............................................................................................................ACGTGTATGCTCGTAGCTATAA....................................................................................................................................2215.005100004
......................................................................................................................................................TTATTGCTTGAGAATACACGTA............................................................................................2215.005000014
.........................................................................................................................................................TTGCTTGAGAATACACGTAGTT.........................................................................................2214.004001003
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGTT.........................................................................................2414.004000220
.........................................................................................................................................................TTGCTTGAGAATACACGTAG...........................................................................................2014.004220000
........................................................................................................................................................ATTGCTTGAGAATACACGTA............................................................................................2013.003000012
.......................................................................................................................................................TATTGCTTGAGAATACAC...............................................................................................1813.003010200
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGG..........................................................................................2313.003100200
........................................................................................................................................................ATTGCTTGAGAATACACG..............................................................................................1812.002000200
.......................................................................................................................................................TATTGCTTGAGAATACACGTC............................................................................................2112.002000020
.......................................................................................................................................................TATTGCTTGAGAATACACGTTT...........................................................................................2212.002000110
..........................................................................................................................................................TGCTTGAGAATACACGTAG...........................................................................................1912.002100010
.......................................................................................................................................................TATTGCTTGAGAATACACGC.............................................................................................2012.002000200
.......................................................................................................................................................TATTGCTTGAGAATACACGTTA...........................................................................................2211.001100000
..............................................................................................................ACGTGTATGCTCGTAGCTATAAT...................................................................................................................................2311.001000100
.......................................................................................................................................................TATTGCTTGAGAATACACGTG............................................................................................2111.001000001
........................................................................................................................................................ATTGCTTGAGAATACACGTAT...........................................................................................2111.001000001
........................................................................................................................................................ATTGCTTGAGAATACACGTAGA..........................................................................................2211.001000100
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGAA.........................................................................................2411.001000010
...........................................................................................................................................................GCTTGAGAATACACGTAG...........................................................................................1811.001010000
...............................................................................................................CGTGTATGCTCGTAGCTATA.....................................................................................................................................2011.001100000
..............................................................................................................ACGTGTATGCTCGTAGCTATAACT..................................................................................................................................2411.001000100
........................................................................................................................................................ATTGCTTGAGAATACACGTAGT..........................................................................................2211.001010000
.......................................................................................................................................................TATTGCTTGAGAATACACGCTT...........................................................................................2211.001000100
.......................................................................................................................................................TATTGCTTGAGAATACACGG.............................................................................................2011.001000100
........................................................................................................................................................ATTGCTTGAGAATACACGTAGC..........................................................................................2211.001010000
.......................................................................................................................................................TATTGCTTGAGAATACACGTTC...........................................................................................2211.001000100
......................................................................................................................................................TTATTGCTTGAGAATACACGTAA...........................................................................................2311.001010000
droBip1
-----GC-CAAGTG--GATTAAAGT----------------GGCA----------------------------------AT-----------CTGAAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGATGT--GC-GAATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCA----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
------------------------------------------------------------------------------------------------AATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATAT--CCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTCGTTCATCA----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
-A-GTG------------------------------------GCAG---------------AA-------------------------------GCTATCTCCAATGGCCACGTGTATGCTCGTAGCTATAGCCTGATAT--CC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCA----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
-C---GCACAAGTG--GATTAAAGT----------------GGCGA---------------CG-------------------------------GCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATAT--CC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCA----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
-ATGCGC-CAAGTG--GATTAAAGT----------------GGCGA---------------CG-------------------------------GCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATAT--CC--AATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAAT------GA---------------------------AAC-----------G------------------SizeHit CountTotal NormTotal
No Reads
droBia1
-T-GTGC-CAAGTG--GATTAAAGT----------------GGCC----------------------------------ATCTCAACCGCAGC-CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATAT--CC--AATGTTATTGCTTGAGAATACACGTAGTTCCACGAGATTTGCCCAGCA----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
-A---------GTG--GATCAACGT----------------GGCGA---------------CGGCC-------------AC-----------C-TCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATAT--CC--GATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCA----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
-A-ATG----------G-------------------------TCGA---------------CG-------------------------------GCAATCTCCAATGGCCACGTGTATACTCGTAGCGATAACCTGATAT--CC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCA----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
-A---------GTG--GATTACGAT----------------GGCGT---------------CG-------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAAT--CC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCA----------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.......................................................................................................................................................TATTGCTTGAGAATACACGTAG...........................................................................................22147512.004751200002450001303004003500033403121448129614625400001110001210131310046036332700000000000000000122246100300232129434311942137121820396371120245853834602677027273906444175359954801698000020000031200231205820400000010004422532892017769329620105615771810622912724200210753251423300050057000000716000000300227884772717110625937200000005364020804622143042264292153178500936334012010612120619100103171272842415131012135113821413148539204156841019147822913989377593242617254223117441017875442824715796710269108257954353322160
.......................................................................................................................................................TATTGCTTGAGAATACACGTA............................................................................................2119825.00982500002000000100200200000200017710514320000000000010000000000011200000000000000000000020000000100702222900003110000010000021542319010949267666690000000000000000000050000000000000001902870145128816071137223432040000032073101000708000000020000000000143002100115000100002413014137250036120125221000844000031110201110133201220012250759161568215310765053020226213094170112501863612413087237013935939558203110
.......................................................................................................................................................TATTGCTTGAGAATACACGT.............................................................................................2012863.00286300000000000000100000010000000229271010000101000000000000003110000000000000000000001000000000000110000006000000010000001620102110131912000000000000000000000100000000100000315502910314223505016514000007202300004020000000100000000003901003200300000000340241210013480131900001138010010000000001101101001100177180177236022811127100174055136000020310100202056762449182725000010
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGT..........................................................................................2311019.001019000000000000000000000001000000000000000000000010000100120134200000000000000000000000000000000002001000017000000100010006101010301065000000000000000010005000000000000000181101200516014020016000000221211000104000000010000001001120000001000103000015120110020038011700003260101000000100002000001000113629343256284020100301394901043115201122030301672310252124100220
..............................................................................................................ACGTGTATGCTCGTAGCTATAAC...................................................................................................................................231689.00689000000001300000000000000000000000000000000000100000000000010000000000000000000000005000001030141302003200010001303000300200160100100000000000000000000000000000000000026500260022101003206500000013001000000100000000000000000000010011100200000001916013030069034000030000000100100000000000000200182421330964111010012057020002300101001024411300000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAA...........................................................................................221470.004700000410002010000000000000000000000000000000000000000000000000000000000000000000030000000001901701010037100000010010005000011201109800000000000000000000000000000000000026390210011381160250280000002200100000000000000000000000000100001000000001000000020000150100000210000000110000000000000000001912211700221000006059000000000000000021610301000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGA..........................................................................................231389.0038900001000000000000000000001000000000000000000000000000000000000000000000000000000200000000001001110000000000000100000320002120213700000000000000000000000000000000000011110900712170250240000001300000000000000000000000000000100003000200004300110230000630220000440000000001100000000000000002017211409126000000120614000010010001101014143323010000
........................................................................................................................................................ATTGCTTGAGAATACACGTAG...........................................................................................211389.00389000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000010000010000000000000006002033301002000000000000000000000000000000000000395402601434220024103500000018000000000000000000000000000000100000000000000003302000000200400000700000000000000000000000000079410010101100003034010000100000000011510220000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAT...........................................................................................221334.00334000010000000000000000002000000000000000000000000000000000000000000000000000000000000000000100000000004000000000000017000000101201412000000000000000000000000000000000000121607003403050900000070100000001000000000000000000012000010002001000030001010046122000031300000000000000000000000000015171690111202000080210000000110011000074740724000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGTATC.......................................................................................261110.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006149000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAC...........................................................................................22176.007600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000202500000000000000000000000000000000000010100400000201000000002100000000000000000000000000100000000000000010000000100001100100000300000000000000010000000000032320200010000302001000110000000000310010000000
.......................................................................................................................................................TATTGCTTGAGAATACACG..............................................................................................19162.0062000000000000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000001130000000000000000000000000000000000000040200021011102000002000000030100000000000000000000000000000000000001000201000000100000000000010100100000000000000015220000000000010200000000000000000710003000100
.........................................................................................................................................................TTGCTTGAGAATACACGTAG...........................................................................................20159.0059000000000000000000600000000010000000000000000000000000000000000000000000000000000000000000000001210000000000000000000000000000000000000000000000000000000000000000000340200380712100000001100000000000000000000000000002000000000000000005000000000000000000000000000000000000000000000011020100000000001100000000000000000100000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTC............................................................................................21153.0053000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000004028000000000000000000000000000000000000220000010000010000000000000000000000000000000000000000000000000000000000400000100000001000000000000000000000000000001010010000000901400000000000000000200010000000
..............................................................................................................ACGTGTATGCTCGTAGCTATA.....................................................................................................................................21150.0050000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000400010100000000000000000000000000000000000000000330000210002020000003000000000000000000000000000000000000000000000000100001000501400002000000000000000000000000000006110200000000000100000000000000000100100000000
..............................................................................................................ACGTGTATGCTCGTAGCTAT......................................................................................................................................20146.0046000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000680200000405060000001000000000000000000000000000001000000000000000000100100000000000000000000000000000000000000000014010000000000000100000000000000000100000000000
......................................................................................................................................................TTATTGCTTGAGAATACACGTAG...........................................................................................23138.0038000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000006000000000000001000000000200000000000000000000000000000000000000230200200100000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001330200000000300000000000000000001210000000000
..............................................................................................................ACGTGTATGCTCGTAGCTATAA....................................................................................................................................22138.0038000010000100000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000230000010001013000000000000000000000000000000000000000000000000000001501100000000000000100000000000000000000010000021030100010000101000000000000000000310000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGC..........................................................................................23136.0036000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000130000000000040000000000000000100000000000000000000000000000000000001000100000001000002100000000000000000000000000043010401000000201000000000000000000210001000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTT............................................................................................21131.0031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000210000000000020000000000000000000000000000000000000000000000000000000001000000500200000000000000000000000000000000001020000000000100100000000000000000810111000000
......................................................................................................................................................TTATTGCTTGAGAATACACGT.............................................................................................21131.00310000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000003000000000000000000010000000000000000000000000000000000000014000000000000000000000000000000000000000000000000000000021200001000000001200000000000000000110000000000
........................................................................................................................................................ATTGCTTGAGAATACACGTAGT..........................................................................................22126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000420100020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001110000000000100000000000000000000200111000000
.......................................................................................................................................................TATTGCTTGAGAATACACGG.............................................................................................20124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000002040000004000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000021400000000000100100000000000000000100000000000
........................................................................................................................................................ATTGCTTGAGAATACACGTA............................................................................................20124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000001000000000000000000000000000000000000000140200110002020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001310000000000000000000000010000000100000000000
........................................................................................................................................................ATTGCTTGAGAATACACGT.............................................................................................19119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100010101040000001000000000000000000000000000001000000000000000000000000000100000000000000000000000000000000000000110000010000000000000000000000000200020000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAAA..........................................................................................23118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000320300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032100010000000000000000000000000000200000000000
...........................................................................................................................................................GCTTGAGAATACACGTAG...........................................................................................18118.0018000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000000000000500000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000001010110000000001000000000000000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGTT.........................................................................................24117.0017000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000400000000000000000000000000001100000000000000201000000000000000301000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTCT...........................................................................................22115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000002032000000000000000000000000000000000000200100000000010000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000100000000000000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGAC.........................................................................................24115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGG..........................................................................................23114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001011000002000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000010100000000000002000000000000000000020001000000
.......................................................................................................................................................TATTGCTTGAGAATACAC...............................................................................................18113.0013000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000100400000000000000000000000000000000000000000102000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGAA.........................................................................................24111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000010000100000000000000000000000000000210000001000
.............................................................................................................CACGTGTATGCTCGTAGCT........................................................................................................................................19111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010100000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011010000000000000000000000000000000300000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGC.............................................................................................20110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000100000001100000000000000000000000000000000000010000000000200100000000000000000000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTG............................................................................................21110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000100000000000000000200000000000
......................................................................................................................................................TTATTGCTTGAGAATACACGTA............................................................................................22110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000010000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000200100000000
..............................................................................................................ACGTGTATGCTCGTAGCTA.......................................................................................................................................1918.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000100000000000000000000000000000000000000000001110000000000000000000000000000000100000000000
..........................................................................................................................................................TGCTTGAGAATACACGTAG...........................................................................................1918.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000200000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000010000000000000100100000000000000000000000000000000000000000
.........................................................................................................................................................TTGCTTGAGAATACACGTAGTT.........................................................................................2218.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000000100000000000000000000200100000000
droSim2
-T---G------------------------------------GCGT---------------CG-------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAAT--CC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCA----------------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.......................................................................................................................................................TATTGCTTGAGAATACACGTAG...........................................................................................2211537.0015374794711350164602352563240115000
.......................................................................................................................................................TATTGCTTGAGAATACACG..............................................................................................1911299.001299896932060210100010000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTA............................................................................................211218.00218323013767452283900000
..............................................................................................................ACGTGTATGCTCGTAGCTATAAC...................................................................................................................................231130.001307044420200000800000
.......................................................................................................................................................TATTGCTTGAGAATACAC...............................................................................................18192.0092000029000000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGT..........................................................................................23157.0057604012510740900000
.......................................................................................................................................................TATTGCTTGAGAATACACGT.............................................................................................20150.0050500143900010000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGA..........................................................................................23133.0033020100002070201000
......................................................................................................................................................TTATTGCTTGAGAATACACGT.............................................................................................21126.0026000000026000000000
........................................................................................................................................................ATTGCTTGAGAATACACGTAG...........................................................................................21122.0022000301700100001000
..............................................................................................................ACGTGTATGCTCGTAGCTATAACC..................................................................................................................................24117.0017000011600000000000
......................................................................................................................................................TTATTGCTTGAGAATACACGTA............................................................................................22112.001200000007220100000
..............................................................................................................ACGTGTATGCTCGTAGCTATA.....................................................................................................................................2117.00711000300000200000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAA...........................................................................................2217.00750000000001100000
..............................................................................................................ACGTGTATGCTCGTAGCTAT......................................................................................................................................2016.00600000600000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAC...........................................................................................2215.00540000000000100000
........................................................................................................................................................ATTGCTTGAGAATACACGT.............................................................................................1913.00300001200000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGG..........................................................................................2313.00320100000000000000
........................................................................................................................................................ATTGCTTGAGAATACACG..............................................................................................1813.00330000000000000000
......................................................................................................................................................TTATTGCTTGAGAATACACGTT............................................................................................2213.00300000003000000000
.......................................................................................................................................................TATTGCTTGAGAATACACA..............................................................................................1913.00320100000000000000
..............................................................................................................ACGTGTATGCTCGTAGCTATAACA..................................................................................................................................2412.00200000000000101000
......................................................................................................................................................TTATTGCTTGAGAATACACG..............................................................................................2012.00200100001000000000
..............................................................................................................ACGTGTATGCTCGTAGCT........................................................................................................................................1812.00200000200000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAT...........................................................................................2212.00200000000000002000
..............................................................................................................ACGTGTATGCTCGTAGCTA.......................................................................................................................................1912.00200000200000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGAAA........................................................................................2511.00100000000000001000
.............................................................................................................CACGTGTATGCTCGTAGCT........................................................................................................................................1911.00101000000000000000
......................................................................................................................................................TTATTGCTTGAGAATACACGA.............................................................................................2111.00100000001000000000
.............................................................................................................CACGTGTATGCTCGTAGCTATAAC...................................................................................................................................2411.00100000100000000000
.......................................................................................................................................................TATTGCTTGAGAATACA................................................................................................1711.00100000000010000000
....................................................................................................................................................TGTTATTGCTTGAGAA....................................................................................................1611.00100000001000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGG.............................................................................................2011.00110000000000000000
..............................................................................................................ACGTGTATGCTCGTAGCTATAAG...................................................................................................................................2311.00100000000000100000
.......................................................................................................................................................TATTGCTTGAGAATAC.................................................................................................1611.00100000000010000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGAA.........................................................................................2411.00110000000000000000
......................................................................................................................................................TTATTGCTTGAGAATACACGTAA...........................................................................................2311.00100000001000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTACC..........................................................................................2311.00100000000000100000
......................................................................................................................................................TTATTGCTTGAGAATACACGTAGA..........................................................................................2411.00100000000100000000
......................................................................................................................................................TTATTGCTTGAGAATACACT..............................................................................................2011.00100000001000000000
..............................................................................................................ACGTGTATGCTCGTAGCC........................................................................................................................................1811.00110000000000000000
..............................................................................................................ACGTGTATGCTCGTAGC.........................................................................................................................................1711.00100000001000000000
...........................................................................................................................................................GCTTGAGAATACACGTAG...........................................................................................1811.00100000100000000000
.......................................................................................................................................................TATTGCTTGAGAATA..................................................................................................1540.25100000000001000000
.......................................................................................................................................................TATTGCTTGAGAATACACTAG............................................................................................2160.17100000000001000000
droSec2
-T---G------------------------------------GCGT---------------CG-------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAAT--CC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCA----------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.......................................................................................................................................................TATTGCTTGAGAATACACGTAG...........................................................................................2216061.006061945110015412475
.......................................................................................................................................................TATTGCTTGAGAATACACGTA............................................................................................2111075.0010752622642781
.......................................................................................................................................................TATTGCTTGAGAATACACGT.............................................................................................201275.0027513788176
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGT..........................................................................................231211.0021116795264
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGA..........................................................................................231108.0010817272242
..............................................................................................................ACGTGTATGCTCGTAGCTATAAC...................................................................................................................................23182.0082454429
........................................................................................................................................................ATTGCTTGAGAATACACGTAG...........................................................................................21162.0062434510
.........................................................................................................................................................TTGCTTGAGAATACACGTAG...........................................................................................20121.00215583
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGC..........................................................................................23119.00190298
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGTT.........................................................................................24114.00141508
.......................................................................................................................................................TATTGCTTGAGAATACACGTAT...........................................................................................22112.00120507
.......................................................................................................................................................TATTGCTTGAGAATACACGTAA...........................................................................................22110.00102305
.......................................................................................................................................................TATTGCTTGAGAATACACGTAC...........................................................................................22110.00100226
..............................................................................................................ACGTGTATGCTCGTAGCTATA.....................................................................................................................................2117.0070043
..............................................................................................................ACGTGTATGCTCGTAGCTATAA....................................................................................................................................2215.0050320
.......................................................................................................................................................TATTGCTTGAGAATACACG..............................................................................................1915.0051004
..............................................................................................................ACGTGTATGCTCGTAGCTA.......................................................................................................................................1914.0041003
.......................................................................................................................................................TATTGCTTGAGAATACACGTT............................................................................................2114.0040301
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGAA.........................................................................................2414.0040022
..........................................................................................................................................................TGCTTGAGAATACACGTAG...........................................................................................1914.0041012
......................................................................................................................................................TTATTGCTTGAGAATACACGTAG...........................................................................................2314.0042101
........................................................................................................................................................ATTGCTTGAGAATACACGTA............................................................................................2014.0043001
.........................................................................................................................................................TTGCTTGAGAATACACGTAGT..........................................................................................2113.0030021
........................................................................................................................................................ATTGCTTGAGAATACACGT.............................................................................................1913.0032001
...........................................................................................................................................................GCTTGAGAATACACGTAG...........................................................................................1813.0032001
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGAAA........................................................................................2512.0020110
........................................................................................................................................................ATTGCTTGAGAATACACGTAT...........................................................................................2112.0021100
......................................................................................................................................................TTATTGCTTGAGAATACACGT.............................................................................................2112.0020002
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGTTT........................................................................................2512.0020011
.........................................................................................................................................................TTGCTTGAGAATACACGTAGTT.........................................................................................2212.0021001
........................................................................................................................................................ATTGCTTGAGAATACACG..............................................................................................1812.0020002
.............................................................................................................CACGTGTATGCTCGTAGCTATAA....................................................................................................................................2311.0010010
..............................................................................................................ACGTGTATGCTCGTAGCTATAACA..................................................................................................................................2411.0011000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGTA.........................................................................................2411.0010010
..............................................................................................................ACGTGTATGCTCGTAGCTAT......................................................................................................................................2011.0010001
.......................................................................................................................................................TATTGCTTGAGAATACACGTAAA..........................................................................................2311.0010001
..............................................................................................................ACGTGTATGCTCGTAGCT........................................................................................................................................1811.0011000
......................................................................................................................................................TTATTGCTTGAGAATACACGTAGT..........................................................................................2411.0010100
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGAC.........................................................................................2411.0010010
......................................................................................................................................................TTATTGCTTGAGAATACACGTA............................................................................................2211.0010010
.............................................................................................................CACGTGTATGCTCGTAGCTATA.....................................................................................................................................2211.0010001
.......................................................................................................................................................TATTGCTTGAGAATACAC...............................................................................................1811.0010010
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGTTTT.......................................................................................2611.0010001
..............................................................................................................ACGTGTATGCTCGTAGCTATAACCTG................................................................................................................................2611.0011000
..............................................................................................................ACGTGTATGCTCGTAGCTT.......................................................................................................................................1911.0010001
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGG..........................................................................................2311.0010100
.................................................................................................................TGTATGCTCGTAGCTATA.....................................................................................................................................1811.0010001
.......................................................................................................................................................TATTGCTTGAGAATACACT..............................................................................................1911.0010001
........................................................................................................................................................ATTGCTTGAGAATACACGTAGT..........................................................................................2211.0010010
........................................................................................................................................................ATTGCTTGAGAATACACGTAGA..........................................................................................2211.0011000
.......................................................................................................................................................TATTGCTTGAGAATACACTAG............................................................................................2150.6030003
droYak3
CA---------GT-------------------------------TA---------------AC-------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACAT--CC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCA----------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.......................................................................................................................................................TATTGCTTGAGAATACACGTAG...........................................................................................2213476.003476987668151583458514421000
.......................................................................................................................................................TATTGCTTGAGAATACACGTA............................................................................................211412.004124358667218740000
.......................................................................................................................................................TATTGCTTGAGAATACACG..............................................................................................191194.001941921100000000
.......................................................................................................................................................TATTGCTTGAGAATACACGT.............................................................................................201121.00121114901852270000
..............................................................................................................ACGTGTATGCTCGTAGCTATAAC...................................................................................................................................23196.009615455171400000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGT..........................................................................................23169.006914195819130000
........................................................................................................................................................ATTGCTTGAGAATACACGTAG...........................................................................................21144.0044029802410000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAT...........................................................................................22121.0021010051410000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGA..........................................................................................23121.002106233700000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAC...........................................................................................22120.0020101300420000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAA...........................................................................................22115.001523103510000
......................................................................................................................................................TTATTGCTTGAGAATACACGTAG...........................................................................................2318.00801401200000
..............................................................................................................ACGTGTATGCTCGTAGCTAT......................................................................................................................................2018.00800003500000
.........................................................................................................................................................TTGCTTGAGAATACACGTAG...........................................................................................2018.00802101130000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGC..........................................................................................2317.00700202300000
..............................................................................................................ACGTGTATGCTCGTAGCTATA.....................................................................................................................................2116.00603120000000
......................................................................................................................................................TTATTGCTTGAGAATACACGT.............................................................................................2115.00500001400000
.......................................................................................................................................................TATTGCTTGAGAATACACGTT............................................................................................2115.00500000410000
..............................................................................................................ACGTGTATGCTCGTAGCTATAA....................................................................................................................................2214.00411010100000
.......................................................................................................................................................TATTGCTTGAGAATACACGTC............................................................................................2113.00300000300000
...........................................................................................................................................................GCTTGAGAATACACGTAG...........................................................................................1812.00201100000000
........................................................................................................................................................ATTGCTTGAGAATACACGTA............................................................................................2012.00201001000000
.........................................................................................................................................................TTGCTTGAGAATACACGTAGT..........................................................................................2112.00201100000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTCT...........................................................................................2211.00100000100000
....................................................................................................................................CCTGACAT--CC--AATGTTATTGCT..........................................................................................................2211.00110000000000
.......................................................................................................................................................TATTGCTTGAGAATACACTC.............................................................................................2011.00100001000000
..............................................................................................................ACGTGTATGCTCGTAGCTATAACA..................................................................................................................................2411.00100100000000
.................................................................................................................TGTATGCTCGTAGCTATAAC...................................................................................................................................2011.00110000000000
......................................................................................................................................................TTATTGCTTGAGAATACACGTA............................................................................................2211.00100010000000
........................................................................................................................................................ATTGCTTGAGAATACACGTAGT..........................................................................................2211.00100001000000
.......................................................................................................................................................TATTGCTTGAGAATACAC...............................................................................................1811.00110000000000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAAA..........................................................................................2311.00100000010000
.............................................................................................................CACGTGTATGCTCGTAGCTA.......................................................................................................................................2011.00100000010000
..........................................................................................................................................................TGCTTGAGAATACACGTAG...........................................................................................1911.00100000010000
........................................................................................................................................................ATTGCTTGAGAATACACGT.............................................................................................1911.00101000000000
.......................................................................................................................................................TATTGCTTGAGAATACACTAG............................................................................................2130.33100000010000
droEre2
CA---------GTG--GATTACGGT----------------GGCGA---------------CT-------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACAT--CC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCA----------------------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.......................................................................................................................................................TATTGCTTGAGAATACACGTAG...........................................................................................2217446.007446966446598252105741270
.......................................................................................................................................................TATTGCTTGAGAATACACGTA............................................................................................2111221.00122131511321489220
.......................................................................................................................................................TATTGCTTGAGAATACACGT.............................................................................................201301.00301121341482050
..............................................................................................................ACGTGTATGCTCGTAGCTATAAC...................................................................................................................................231128.001284257184700
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGT..........................................................................................231102.00102918622560
........................................................................................................................................................ATTGCTTGAGAATACACGTAG...........................................................................................21192.00924625111270
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGA..........................................................................................23181.00817612014420
.......................................................................................................................................................TATTGCTTGAGAATACACGTAT...........................................................................................22160.0060006103410
.......................................................................................................................................................TATTGCTTGAGAATACACGTAA...........................................................................................22131.003140504180
..............................................................................................................ACGTGTATGCTCGTAGCTATA.....................................................................................................................................21120.002000061130
.......................................................................................................................................................TATTGCTTGAGAATACACGTAC...........................................................................................22118.00180720180
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGC..........................................................................................23117.00171222190
.........................................................................................................................................................TTGCTTGAGAATACACGTAG...........................................................................................20117.001751000110
......................................................................................................................................................TTATTGCTTGAGAATACACGTAG...........................................................................................23112.00121010280
.......................................................................................................................................................TATTGCTTGAGAATACACG..............................................................................................1918.0080120230
..............................................................................................................ACGTGTATGCTCGTAGCTAT......................................................................................................................................2017.0070010150
..............................................................................................................ACGTGTATGCTCGTAGCTA.......................................................................................................................................1917.0071000060
........................................................................................................................................................ATTGCTTGAGAATACACGTAGT..........................................................................................2216.0061102020
.......................................................................................................................................................TATTGCTTGAGAATACACGTG............................................................................................2115.0051000040
..........................................................................................................................................................TGCTTGAGAATACACGTAG...........................................................................................1915.0051000220
......................................................................................................................................................TTATTGCTTGAGAATACACGTA............................................................................................2214.0041010110
...........................................................................................................................................................GCTTGAGAATACACGTAG...........................................................................................1814.0040000040
........................................................................................................................................................ATTGCTTGAGAATACACGTA............................................................................................2014.0042000020
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGAA.........................................................................................2413.0030010020
..............................................................................................................ACGTGTATGCTCGTAGCTATAA....................................................................................................................................2213.0030011100
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGG..........................................................................................2313.0030001110
.......................................................................................................................................................TATTGCTTGAGAATACACGTT............................................................................................2113.0030100200
......................................................................................................................................................TTATTGCTTGAGAATACACG..............................................................................................2013.0030000030
........................................................................................................................................................ATTGCTTGAGAATACACGTAGA..........................................................................................2212.0022000000
......................................................................................................................................................TTATTGCTTGAGAATACACGT.............................................................................................2112.0020000110
.......................................................................................................................................................TATTGCTTGAGAATACACGTC............................................................................................2112.0020010010
..............................................................................................................ACGTGTATGCTCGTAGCTATAAA...................................................................................................................................2312.0020010010
..............................................................................................................ACGTGTATGCTCGTAGCT........................................................................................................................................1812.0020000020
........................................................................................................................................................ATTGCTTGAGAATACACGT.............................................................................................1912.0020000020
.............................................................................................................CACGTGTATGCTCGTAGCTATAA....................................................................................................................................2312.0021000100
..........................................................................................................................................................TGCTTGAGAATACACGTAA...........................................................................................1911.0010000100
.........................................................................................................................................................TTGCTTGAGAATACACGTAGTCT........................................................................................2311.0010000010
.......................................................................................................................................................TATTGCTTGAGAATACACGTAAA..........................................................................................2311.0010000010
.......................................................................................................................................................TATTGCTTGAGAATACACTAG............................................................................................2141.0043000010
.............................................................................................................CACGTGTATGCTCGTAGCTATA.....................................................................................................................................2211.0010000010
........................................................................................................................................................ATTGCTTGAGAATACACGTAGC..........................................................................................2211.0010000010
.........................................................................................................................................................TTGCTTGAGAATACACGT.............................................................................................1811.0010000010
..............................................................................................................ACGTGTATGCTCGTAGCTATAAT...................................................................................................................................2311.0010000010
.......................................................................................................................................................TATTGCTTGAGAATACACTA.............................................................................................2011.0010000010
......................................................................................................................................................TTATTGCTTGAGAATACACGTAA...........................................................................................2311.0010010000
...............................................................................................................................................C--AATGTTATTGCTTGAGAATACACG..............................................................................................2511.0010010000
.......................................................................................................................................................TATTGCTTGAGAATACACGTAGTT.........................................................................................2411.0010000010
........................................................................................................................................................ATTGCTTGAGAATACACGTAGTC.........................................................................................2311.0011000000
.........................................................................................................................................................TTGCTTGAGAATACACGTAGT..........................................................................................2111.0010000100

Generated: 10/20/2015 at 10:15 PM