ID:

dmo_2480

 Coordinate:

scaffold_6680:13378150-13378300 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dmoj_GLEANR_13376:5]; CDS [Dmoj\GI13451-cds]; intron [Dmoj\GI13451-in]

Repeatable elements

NameClassFamilyStrand
GA-richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACAGAATTGAGCCTAAAGATGAGACGGATGAGCTTGTTGTGCAGAATTCAGTAAGTGATTGAGGGAGAAAGTGGGTGGATGAATGAGAGAAAGACGAAGGGCGAGGAAGAAATTGAATGAAGGAAATGGAATAAAGGATAGGAAAGGAGAAAGCAAGAGGGAATGGGAGAGAGAGTCAGAAAAAGGAGAAGAGGGGGCGAAACTGTGAGAAAGATATATAGTAAAGTATAGAAAGTAATAAAGAGAGAGAG
**************************************************.......................................................................................................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 M046
female body
 V056
head
 V049
head
 V041
embryo
 M060
embryo
........................................................................................................................................................GCAAGAGGGAATGGGTGGGAAA............................................................................. 22 3 1 9.00 9 6 3 0 0 0 0
.........................................................................................................................................................CAAGAGGGAATGGGTGGGAAA............................................................................. 21 3 2 6.00 12 8 4 0 0 0 0
............CTAAAGATGAGACGGATGAGCTT........................................................................................................................................................................................................................ 23 0 1 6.00 6 4 1 1 0 0 0
.......................................................................................................................................................AGCAAGAGGGAATGGGTGGGAA.............................................................................. 22 3 1 4.00 4 1 3 0 0 0 0
..........................GATGAGCTTGTTGTGCAGAATTCAC........................................................................................................................................................................................................ 25 1 1 3.00 3 1 2 0 0 0 0
..............AAAGATGAGACGGATGAG........................................................................................................................................................................................................................... 18 0 1 3.00 3 0 3 0 0 0 0
............CTAAAGATGAGACGGATGAGC.......................................................................................................................................................................................................................... 21 0 1 3.00 3 2 1 0 0 0 0
................AGATGAGACGGATGAGCT......................................................................................................................................................................................................................... 18 0 1 3.00 3 0 3 0 0 0 0
........................................................................................................................................................GCAAGAGGGAATGGGTGGGAA.............................................................................. 21 3 2 3.00 6 6 0 0 0 0 0
....AATTGAGCCTAAAGATGAGACGGATGAG........................................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0
.......................................................................................................................................................AGCAAGAGGGAATGGGTGGGAAA............................................................................. 23 3 1 2.00 2 2 0 0 0 0 0
..........GCCTAAAGATGAGACGGATGAGCT......................................................................................................................................................................................................................... 24 0 1 2.00 2 1 1 0 0 0 0
.......TGAGCCTAAAGATGAGACGGATGAGCT......................................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
.............................GAGCTTGTTGTGCAGAATTCAC........................................................................................................................................................................................................ 22 1 1 2.00 2 0 2 0 0 0 0
...GAATTGAGCCTAAAGATGAGACGGAT.............................................................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0
..................ATGAGACGGATGAGCTTGT...................................................................................................................................................................................................................... 19 0 1 2.00 2 1 1 0 0 0 0
..............AAAGATGAGACGGATGAGCT......................................................................................................................................................................................................................... 20 0 1 2.00 2 1 1 0 0 0 0
................................CTTGTTGTGCAGAATTCAC........................................................................................................................................................................................................ 19 1 1 2.00 2 0 2 0 0 0 0
..........GCCTAAAGATGAGACGGA............................................................................................................................................................................................................................... 18 0 1 2.00 2 0 1 0 1 0 0
.......................................................................................................................................................AGCAAGAGGGAATAGGTGGGA............................................................................... 21 3 1 2.00 2 2 0 0 0 0 0
..........GCCTAAAGATGAGACGGATGAGCTT........................................................................................................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................CAAGAGGGAATGGGTGGGAA.............................................................................. 20 3 5 1.60 8 6 2 0 0 0 0
.......TGAGCCTAAAGATGAGACGGATGA............................................................................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0
....AATTGAGCCTAAAGATGAGACGGAT.............................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
.........AGCCTAAAGATGAGACGGATGAG........................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................GCAAGAGGGAATGGGTGGGA............................................................................... 20 2 2 1.00 2 2 0 0 0 0 0
.......................................................................................................................................................AGCAAGAGGGAATGGGTGG................................................................................. 19 2 2 1.00 2 1 1 0 0 0 0
................AGATGAGACGGATGAGCTTGTT..................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
.............................GAGCTTGTTGTGCAGAATTCACA....................................................................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
............CTAAAGATGAGACGGATGAGCT......................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
......TTGAGCCTAAAGATGAGACGGA............................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
..................ATGAGACGGATGAGCTTGTTGTG.................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
.CAGGATTGAGCCTAAAGATGAGACGG................................................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
........GAGCCTAAAGATGAGACG................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0
.....ATTGAGCCTAAAGATGAGACGGAT.............................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
..........GCCTAAAGATGAGACGGATGAGCTTGTT..................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.............................GAGCTTGTTGTGCAGAATTCA......................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
.............................GAGCTTCTTGTGCAGAATTCACA....................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0
.............................GAGCTTGTTGTGCAGAATTCACAA...................................................................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
.........AGCCTAAAGATGAGACGGATGAGCT......................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.................GATGAGACGGATGAGCTT........................................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0
..AGAATTGAGCCTAAAGATGAGACGGA............................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.......TGAGCCTAAAGATGAGACGGA............................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................AGCAAGAGGGAATGGGTGGG................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0
................................CTTGTTGTGCAGAATTCACAA...................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0
................AGATGAGACGGATGAGCTT........................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
............CTAAAGATGAGACGGATGA............................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0
..AGAATTGAGCCTAAAGATGAGACGGAT.............................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
............CTAAAGATGAGACGGATGAGCTTGTT..................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
...GAATTGAGCCTAAAGATGAGACGG................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
.........AGCCTAAAGATGAGACGGA............................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
..............AAAGATGAGACGGATGAGCTT........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
..........GCCTAAAGATGAGACGGATGAGCTTGT...................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.......TGAGCCTAAAGATGAGACGGAT.............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................AGCAAGAGGGAATGGGTGGGA............................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................ATGAGACGGATGAGCTTGTT..................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
.CAGAATTGAGCCTAAAGATGAGA................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
............CTAAAGATGAGACGGATGAG........................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
..........GCCTAAAGATGAGACGGATGAG........................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
.....ATTGAGCCTAAAGATGAGACGGATGAG........................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
...............AAGATGAGACGGATGAGCT......................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
..AGAATTGAGCCTAAAGATGAGACG................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
.................................TTGTTGTGCAGAATTCAC........................................................................................................................................................................................................ 18 1 1 1.00 1 0 0 1 0 0 0
.CAGAATTGAGCCTAAAGATGAGACGGAT.............................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
..............AAAGATGAGACGGATGAGCTTGTT..................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
........GAGCCTAAAGATGAGACGGATGAGCTT........................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0
.............TAAAGATGAGACGGATGAG........................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
.....................AGACGGATGAGCTTGTTGT................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
.......TGAGCCTAAAGATGAGACGGATGAGC.......................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.........AGCCTAAAGATGAGACGGATGAGCTT........................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
.........AGCCTAAAGATGAGACGGATG............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
..............................AGCTTGTTGTGCAGAATTCACA....................................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
.............TAAAGATGAGACGGATGAGCT......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...........CCTAAAGATGAGACGGATGA............................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
.............TAAAGATGAGACGGATGAGCTT........................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
..............AAAGATGAGACGGATGAGCTTGTTGT................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................GCAAGAGGGAATGGGTGGG................................................................................ 19 2 5 0.80 4 4 0 0 0 0 0
..........................................................................................................................................................AAGAGGGAATGGGTGGGA............................................................................... 18 2 17 0.65 11 10 1 0 0 0 0
............TTAAAGATGAGACGGATG............................................................................................................................................................................................................................. 18 1 2 0.50 1 0 1 0 0 0 0
.........................................................................................................................................................CAAGAGGGAATGGGTGGGA............................................................................... 19 2 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................................................ATCAAGAGGGAATGGGTGGGA............................................................................... 21 3 2 0.50 1 1 0 0 0 0 0
................................CTTGTTGTGCAGAATTCACA....................................................................................................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0 0
......................................................................................................................................................AAGGAAGAGGGAATGGGGGA................................................................................. 20 2 3 0.33 1 1 0 0 0 0 0
........................................GCAGAATTCGGTAAGTGTTGG.............................................................................................................................................................................................. 21 3 4 0.25 1 1 0 0 0 0 0
.......................................................................................................................................................AGCAAGAGGGAATAGGTGGG................................................................................ 20 3 5 0.20 1 0 1 0 0 0 0
.........................................................................................................................................................CAAGAGGGAATAGGAGGG................................................................................ 18 2 5 0.20 1 0 0 0 0 1 0
........................................................................................................................................................GCAAGAGGGAATAGGTGGGA............................................................................... 20 3 6 0.17 1 1 0 0 0 0 0
.........................................................................................................................................................CAAGAGGGAATAGGTGGGA............................................................................... 19 3 20 0.15 3 1 2 0 0 0 0
.......................................TGCAGAATTCGGTAAGCGT................................................................................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 0 1
...................................................................................................................................................................TGGGAGACAGTGTCAGGAA..................................................................... 19 3 18 0.06 1 1 0 0 0 0 0
..............................................................................................CGTAGGGCGATGAAGAAC........................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0
...........................................................................................................................................................AGAGGGAATGGGAGGGAA.............................................................................. 18 2 20 0.05 1 1 0 0 0 0 0
........................................GCAGAATTCTGTAAGCGTT................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

TGTCTTAACTCGGATTTCTACTCTGCCTACTCGAACAACACGTCTTAAGTCATTCACTAACTCCCTCTTTCACCCACCTACTTACTCTCTTTCTGCTTCCCGCTCCTTCTTTAACTTACTTCCTTTACCTTATTTCCTATCCTTTCCTCTTTCGTTCTCCCTTACCCTCTCTCTCAGTCTTTTTCCTCTTCTCCCCCGCTTTGACACTCTTTCTATATATCATTTCATATCTTTCATTATTTCTCTCTCTC
**************************************************.......................................................................................................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
..................................................................................................................................................................TATCCTCTCTCTAAGTCT....................................................................... 18 2 17 0.06 1 1
...............................................................................................................................................................................................TCCCGAGCTTGGACACTC.......................................... 18 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6680:13378100-13378350 + dmo_2480 ACAGAATTGAGCCTAAAGATGAGACGGATGAGC------------------------------------------------------------------TTGTTGTGCAGAATTCAGTAAGTGATTG--AGG---GAGAAAGTGGGT--------------GGATGAATG--AGAG---AAAGACGAAGGGCG---------AGGAAGAAATTG--AATGAAGGA-------AATGGAATAAA-------GGATAGGAAAGGAGAA----AGCAAGAGGGAATG-----------------------------------GG-AGAGAGAG------TCA-GAAAAAGGAGAAGAGGGGGCGAAACTGTG------AGAAAGATATATAGT-AAAGTATAGAAAGTAATAAAGAGAGAGAG
droVir3 scaffold_12875:17805885-17806143 + AGAGAACG----------------------------------------GAGAAAATAGAG--AGCACAGAAT---------------------------GAATAGAGCAGAGAAAAATAAGAGTAAG--AGTGAG---AGAGAGGGA--------GAGAGAGAG-AAGAGTAA--G---AG--------AGAG---------AGA-AGAGTAAG--AGACAGAGA--G----AAGAGTAAGAG-AGAGAGA--GAGAGAGGTATGA-G----------AGAAGAGTAA-----------GAGAGAGAAGAGTAAGAGAGAG-AGAGAGAG------GTATGAGAGA-------AGAGTAA--GAGAGAG------AGAGAGAGAGAGAGAGAAGAGTAAGAGAGAGAGAGAGAGAGAGAG
droGri2 scaffold_14906:12629097-12629347 - ACTACATTCATCCTA-----------------------------------------------------AAATGAAAATTGCTTTATAAAAATATAA-ATTTGTTGTAA-GGCTACAGT---TGCTAAAGA-----GAG--------A------GAGAGAGGTGGATACAG--ATAG---AG--------ATTG---------ACATAGAGATAG--AAATAGATA-------GATAGATCGAT-CGAGATA--GAGATGGAGATAGAGATAGAG----ATGGATAGAGC-----TTTA---------------------GATAA----AGATTGAT-----------------AGAGAGAGAGAGAGAG------AGAGAGATAGAGAGA-AAGAGAGAGAGATAGAGAGAAAGAGAGAG
droWil2 scf2_1100000004943:1651282-1651479 + AGAGATAG----------------------------------------AGATAG------------------------------------------------------------------------------------AGATAGAGA------TAGAGATAGAGATAGAG--ATAG---AG--------ATAG---------AGATAGAGATAG--AGATAGAGA-------TAGAGATAGAG-ATAGAGA--TAGAGATAGAGATAGAGATAG----AGATAGAGATA-----GAGA---------------------TAGAG----ATAGAGAT-----------------AGAGATAGAGATAGAG------ATAGAGATAGAGATA-GAGATAGAGATAGAGATAGAGATAGAGAT
dp5 4_group5:1769348-1769582 + GAATTTAT---TGCAAAGGAGAGGCAGAGAGACTTTACAATCAGAGAGAGT-----------------------------------------------------------------------GTGAGAGA-----GAG--------T------GAGAGTGAGAGAGAGTG--AGAG---AG--------AGCG---------AGAGAGAGAGTG--AGAGAGTGA-------GAGAGAGAGAG-TGAGAGA--GAGTGAGAGAGAGAGAGAGTG----AGAGAGAGAGA-----GAGT---------------------GAGAG----AGAGAGAG-----------------TAAGAGTGAGAGAGAG------AGTAAGAGAGAGAGA-GTAAGAGAGAGAGAGAGAGAGAGAGTGAG
droPer2 scaffold_10:835556-835773 + AAAGAAGA----------------------------------------GAGGGAATGA------GC---------------------------------TAAAGATAC------------AAAAAGA--AGTGAG---GGAAAGATA----------------------------------------------------------AAAAGATAC--AAAAGAAGA-------AAGGGAAGGAT-AGAAAGA--TACAAAAGGAAGCAAAG--------AAATGA-----GCGAAAGATACAAAAAGAAGAGCGGGAATGGG-CGAAAGAT------TCA-AAAAGA-------AGAGAGG--GAAGGAT------AGAAAGATACAAAAAGAAGTGAGGGAAAGATATAAAGATACAAAA
droAna3 scaffold_13417:6764805-6765036 + ACTGAGAC----------------------------------------TGAGAC--TGAGACTG-AGACTG------------AGACT-GAGACTGAGCAA---------------------GAGAGACA-----GAG--------A------GACAGAGAGACAGAGAG--ACAG---AG--------AGAC---------AGAGAGACAGAG--AGACAGAGA-------GACAGAGAGAC-AGAGAGA--CAGAGAGACAGAGAGACAGAG----AGACAGAGAGA-----CAGA---------------------GAGAC----AGAGAGAC-----------------AGAGAGACAGAGAGAC------AGAGAGACAGAGAGA-CAGAGAGACAGAGAGACAGAGAGACAGAG
droBip1 scf7180000396126:1891-2082 + AGAGATAG----------------------------------------AGATAG------------------------------------------------------------------------------------AGATAGAGA------TA------GAGATAGAG--ATAG---AG--------ATAG---------AGATAGAGATAG--AGATAGAGA-------TAGAGATAGAG-ATAGAGA--TAGAGATAGAGATAGAGATAG----AGATAGAGATA-----GAGA---------------------TAGAG----ATAGAGAT-----------------AGAGATAGAGATAGAG------ATAGAGATAGAGATA-GAGATAGAGATAGAGATAGAGATAGAGAT
droKik1 scf7180000302544:1520129-1520364 + AAAGGTGA-GAGATGATGTT------AAAAAGC------------------------------------------------------------------GTATAAGCCAAGAAAGAGTAAAAGAGAGAGA-----GAG--------A------GAGAGAGAGAGAGAGAG--AGAG---AG--------AGAG---------AGAGAGAGAGAG--AGAGAGAGA-------GAGAGAGAGAG-AGAGAGA--GAGAGAGAGAGAGAGAGAGAG----AGAGAGAGAGA-----GAGA---------------------GAGAG----AGAGAGAG-----------------AGAGAGAGAGAGAGAG------AGAGAGAGAGAGAGA-GAGAGAGAGAGAGAGAGAGAGAGAGAGAG
droFic1 scf7180000452868:426-611 - AGAGAAAG----------------------------------------AAGGAA------------------------------------------------------------------------------------AGAAAGGAAGGAAGA------------AA--------G---AA--------AGAA---------AGGAAGGAAGAG--AGAGAGAGA-------GAAAGAAAGAA-AGAAAGA--AAGAAAGCAAGGAAGGAAGAG----AGAGAGAGAAA-----GAAA---------------------GAAAG----AAAGAAAG-----------------AAAGAAAGAAGGAAGG------AAGGAAAGAAGGAAA-GAAAGAAAGAAAGAAAGAAAGAAAGAAAG
droEle1 scf7180000491026:174269-174461 - GATGAAAG----------------------------------------AAAAAG------------------------------------------------------------------------------------GAAAGAAGA------AG-AAGAAAAGAAAAGG--AAAG---AA--------GATGAAGAAAGAA--------AAGGAA--AGAAGAA-----------GAAGA---AAAAAAG--GAAAGAAGAAGAAGAAAAAAA----GGAAAGAAGAAGAAGAAAAA------------------------AC-----GGAAAGA-----------------AGAAGAAGAAAAAAAA------GGAAAGAAGAAGAAG-AAAAAGAAGGAAAGAAGAAGAAGAAAAAG
droRho1 scf7180000779312:45756-45814 + ACGCAACTGAGAACTACGCC---------------------------------------------------------------GATGAAGATGGAGAGACTGTTGTGCAGACTTCGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGT
droBia1 scf7180000299393:8993-9188 - CAGAGAGA----------------------------------------GAGAGA------------------------------------------------------------------------------------GAGAGAGAG---------------AGAGAGAG--AGAG---AG--------AGAG---------AGAGAGAGAGAG--AGAGAGAGA-------GAGAGAGAGAG-AGAGAGA--GAGAGAGAGAGAGAGAGAGAG----AGAGAGAGAGA-----GAGA---------------------GAGAG----AGAGAGAG-----------------AGAGAGAGAGAGAGAGAAGGAAAGAGAGAGATAGAGAAAGGAGAGAGAGAGAGAAAAAAAGAGAGGG
droTak1 scf7180000415843:157007-157114 + AGCGAAAG----------------------------------------GGAACT------------------------------------------------------------------------------------GGAGAGGGA------GC--------------------------------------------------------------------------------------------------------------------------------GGGAAA-----GGGA---------------------GAGGG----AGAGGGAA-----------------AGGGAGCGAGACAGAG------AGAGGGAAAGAGAAA-GAGATAGAGAAAGGGATAGGGAGAGAGAT
droEug1 scf7180000409554:1351992-1352167 + GAAGAGGA----------------------------------------AAAAAA------------------------------------------------------------------------------------GAGAAAAGA------AG-AGG--------------------AA--------AAGA-GGAGAGAG--------GAGGAA--AAAAAGAGGAAAGAAGAGGAGAAAA-------GGAGAGAAGAGGAAAA----AAGAAGAAAGAAGA-----------------------------------GG-AGA---AGAGGAGA-----------------GAAGAGGAAAAAAAGA------GAAAAGAAGAGGAAA-AGAGGAGAGAAGAGGAAAAAAGAGAGAGA
dm3 chrUextra:12338029-12338255 - AAAGACAA---AG-----------------------------------AGAAGG----AGAAAG-ACATAG------------AGAATGGAGAAAGAGAAA---------------------GGATGATA-----GAG--------A------AAGAGA----A-AAGAG--AAAG---AG--------AAAG---------AGAAAGAGAAAG--AGAAAGAGA-------AAGAGAAAGAG-AAAGAGA--AAGAGAAAGAGAAAGAGA-AT----AGAGAAAGAGA-----AAGA---------------------GAAAG----AGAAAGAG-----------------AAAGAGAAAGAGAAAG------AGAAAGAGAAAGAGA-AAGAGAAAGAGAAAGAGAAAGAGAAAGAG
droSim2 2l:600765-600948 + AAGAAGAG----------------------------------------AAGAGG------------------------------------------------------------------------------------AGGAAAAAAGAAAAG------------AA--------GAGGAA--------AGAA-GGAAAGAA--------GAGGAA--AGAAGGA------------AGGA-GGCAAAAAG--AAAGGAAGAGGAAAGAAGAAG----AGAAGAGGAAA-----GAAG---------------------ACGAG----AAGAGGAA-----------------AGAAGAAGAGATGAGG------AAAGAAAAAGAGAAG-AGAAAAGAAAAAGAGAAGAGGAAAGAAAA
droSec2 scaffold_14:609135-609320 + AAGGAAAA----------------------------------------AAGAAG------------------------------------------------------------------------------------TGGAAAGAAAAAGAG------------AA--------GAGGAA--------AGAA-----------GAAAA-GAGAAA--AGAAGAAGAGA---AGAGGAAGA-GGAAAGAAG--AAAGGAAGAGGAAAGAAGAAA----GGAAGAAGAAA-----GAAG---------------------AAAAG----AAGAAGAA-----------------AAAAGAAA----GGAA------GAGGAAAGAAGAAGA-GAAGAGAAAAGAAGAAGAGAAGAGAAAAG
droYak3 2L:616405-616594 + AAGGAGAA----------------------------------------AGGAAG------------------------------------------------------------------------------------AGGAAAGGAGAAAAG------------AG--------G---AA--------ATAA-GAAAAGAA--------GAGGAA--AGGAAAAGAGA---AGAAGAAAGGA-AAAG--------GGAGGAGGAAAGAAGAAA-GAAAGAGGA-----GGAGAAAAGACG------------------AAAAG----AAAAGCAG-----------------AGAAGAAAAGAAGAGG------AAAGAAGAAAGGAAG-AGGAAAAAAGAAAAGAAGAAGAGAGAAGA
droEre2 scaffold_4784:12896487-12896714 + AAAGAAGC----------------------------------------AAAGAAACAG------CCT----------------AGTGTGCGAGAAGAGAAGGCTTTCC---------------------GAA---GAG--------A------AAGAGAGGGAGAGAAAG--AGAG---AG--------AGAG---------ACCGAGAGATAT--ATAGAGAGA-------GAGAGAAAGAG-AGTCAGA--GAGTCAGAGAGATAGAGCGAT----AGAGAGAGAGA-----GAGA---------------------GAGAG----AGAGAGAG-----------------AGAGAGAGAGAGTGAG------AGAGACAGAGAGAGA-GAGAGAGAGAGAGAGAGAATGAGAGAGAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ACAGAATTGAGCCTAAAGATGAGACGGATGAGC------------------------------------------------------------------TTGTTGTGCAGAATTCAGTAAGTGATTG--AGG---GAGAAAGTGGGT--------------GGATGAATG--AGAG---AAAGACGAAGGGCG---------AGGAAGAAATTG--AATGAAGGA-------AATGGAATAAA-------GGATAGGAAAGGAGAA----AGCAAGAGGGAATG-----------------------------------GG-AGAGAGAG------TCA-GAAAAAGGAGAAGAGGGGGCGAAACTGTG------AGAAAGATATATAGT-AAAGTATAGAAAGTAATAAAGAGAGAGAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............CTAAAGATGAGACGGATGAGC------------------------------------------------------------------TT...............................................................................................................................................................................................................................................................................................................................2316.006100104
..........................GATGAGC------------------------------------------------------------------TTGTTGTGCAGAATTCAC...............................................................................................................................................................................................................................................................................................................2513.003200001
..............AAAGATGAGACGGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
............CTAAAGATGAGACGGATGAGC------------------------------------------------------------------.................................................................................................................................................................................................................................................................................................................................2113.003100002
................AGATGAGACGGATGAGC------------------------------------------------------------------T................................................................................................................................................................................................................................................................................................................................1813.003300000
....AATTGAGCCTAAAGATGAGACGGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................2812.002000002
..........GCCTAAAGATGAGACGGATGAGC------------------------------------------------------------------T................................................................................................................................................................................................................................................................................................................................2412.002100001
.......TGAGCCTAAAGATGAGACGGATGAGC------------------------------------------------------------------T................................................................................................................................................................................................................................................................................................................................2712.002000002
.............................GAGC------------------------------------------------------------------TTGTTGTGCAGAATTCAC...............................................................................................................................................................................................................................................................................................................2212.002200000
...GAATTGAGCCTAAAGATGAGACGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................2612.002000002
..................ATGAGACGGATGAGC------------------------------------------------------------------TTGT.............................................................................................................................................................................................................................................................................................................................1912.002100001
..............AAAGATGAGACGGATGAGC------------------------------------------------------------------T................................................................................................................................................................................................................................................................................................................................2012.002100001
................................C------------------------------------------------------------------TTGTTGTGCAGAATTCAC...............................................................................................................................................................................................................................................................................................................1912.002200000
..........GCCTAAAGATGAGACGGA........................................................................................................................................................................................................................................................................................................................................................................................................1812.002101000
..........GCCTAAAGATGAGACGGATGAGC------------------------------------------------------------------TT...............................................................................................................................................................................................................................................................................................................................2512.002000002
.......TGAGCCTAAAGATGAGACGGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
....AATTGAGCCTAAAGATGAGACGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.........AGCCTAAAGATGAGACGGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
................AGATGAGACGGATGAGC------------------------------------------------------------------TTGTT............................................................................................................................................................................................................................................................................................................................2211.001100000
.............................GAGC------------------------------------------------------------------TTGTTGTGCAGAATTCACA..............................................................................................................................................................................................................................................................................................................2311.001000001
............CTAAAGATGAGACGGATGAGC------------------------------------------------------------------T................................................................................................................................................................................................................................................................................................................................2211.001100000
......TTGAGCCTAAAGATGAGACGGA........................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..................ATGAGACGGATGAGC------------------------------------------------------------------TTGTTGTG.........................................................................................................................................................................................................................................................................................................................2311.001000001
........GAGCCTAAAGATGAGACG..........................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
.....ATTGAGCCTAAAGATGAGACGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
..........GCCTAAAGATGAGACGGATGAGC------------------------------------------------------------------TTGTT............................................................................................................................................................................................................................................................................................................................2811.001000001
.............................GAGC------------------------------------------------------------------TTGTTGTGCAGAATTCA................................................................................................................................................................................................................................................................................................................2111.001100000
.........AGCCTAAAGATGAGACGGATGAGC------------------------------------------------------------------T................................................................................................................................................................................................................................................................................................................................2511.001000001
.................GATGAGACGGATGAGC------------------------------------------------------------------TT...............................................................................................................................................................................................................................................................................................................................1811.001100000
..AGAATTGAGCCTAAAGATGAGACGGA........................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.......TGAGCCTAAAGATGAGACGGA........................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
................AGATGAGACGGATGAGC------------------------------------------------------------------TT...............................................................................................................................................................................................................................................................................................................................1911.001000001
............CTAAAGATGAGACGGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..AGAATTGAGCCTAAAGATGAGACGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
............CTAAAGATGAGACGGATGAGC------------------------------------------------------------------TTGTT............................................................................................................................................................................................................................................................................................................................2611.001100000
...GAATTGAGCCTAAAGATGAGACGG.........................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.........AGCCTAAAGATGAGACGGA........................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..............AAAGATGAGACGGATGAGC------------------------------------------------------------------TT...............................................................................................................................................................................................................................................................................................................................2111.001100000
..........GCCTAAAGATGAGACGGATGAGC------------------------------------------------------------------TTGT.............................................................................................................................................................................................................................................................................................................................2711.001000001
.......TGAGCCTAAAGATGAGACGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..................ATGAGACGGATGAGC------------------------------------------------------------------TTGTT............................................................................................................................................................................................................................................................................................................................2011.001100000
.CAGAATTGAGCCTAAAGATGAGA............................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
............CTAAAGATGAGACGGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..........GCCTAAAGATGAGACGGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.....ATTGAGCCTAAAGATGAGACGGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...............AAGATGAGACGGATGAGC------------------------------------------------------------------T................................................................................................................................................................................................................................................................................................................................1911.001000001
..AGAATTGAGCCTAAAGATGAGACG..........................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
...................................................................................................TTGTTGTGCAGAATTCAC...............................................................................................................................................................................................................................................................................................................1811.001000100
.CAGAATTGAGCCTAAAGATGAGACGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
..............AAAGATGAGACGGATGAGC------------------------------------------------------------------TTGTT............................................................................................................................................................................................................................................................................................................................2411.001000100
........GAGCCTAAAGATGAGACGGATGAGC------------------------------------------------------------------TT...............................................................................................................................................................................................................................................................................................................................2711.001000001
.............TAAAGATGAGACGGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.....................AGACGGATGAGC------------------------------------------------------------------TTGTTGT..........................................................................................................................................................................................................................................................................................................................1911.001100000
.......TGAGCCTAAAGATGAGACGGATGAGC------------------------------------------------------------------.................................................................................................................................................................................................................................................................................................................................2611.001000001
.........AGCCTAAAGATGAGACGGATGAGC------------------------------------------------------------------TT...............................................................................................................................................................................................................................................................................................................................2611.001000001
.........AGCCTAAAGATGAGACGGATG......................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............................AGC------------------------------------------------------------------TTGTTGTGCAGAATTCACA..............................................................................................................................................................................................................................................................................................................2211.001100000
.............TAAAGATGAGACGGATGAGC------------------------------------------------------------------T................................................................................................................................................................................................................................................................................................................................2111.001000001
...........CCTAAAGATGAGACGGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.............TAAAGATGAGACGGATGAGC------------------------------------------------------------------TT...............................................................................................................................................................................................................................................................................................................................2211.001000001
..............AAAGATGAGACGGATGAGC------------------------------------------------------------------TTGTTGT..........................................................................................................................................................................................................................................................................................................................2611.001000001
................................C------------------------------------------------------------------TTGTTGTGCAGAATTCACA..............................................................................................................................................................................................................................................................................................................2020.501100000
droVir3
AGAGAACG----------------------------------------GAGAAAATAGAG--AGCACAGAAT---------------------------GAATAGAGCAGAGAAAAATAAGAGTAAG--AGTGAG---AGAGAGGGA--------GAGAGAGAG-AAGAGTAA--G---AG--------AGAG---------AGA-AGAGTAAG--AGACAGAGA--G----AAGAGTAAGAG-AGAGAGA--GAGAGAGGTATGA-G----------AGAAGAGTAA-----------GAGAGAGAAGAGTAAGAGAGAG-AGAGAGAG------GTATGAGAGA-------AGAGTAA--GAGAGAG------AGAGAGAGAGAGAGAGAAGAGTAAGAGAGAGAGAGAGAGAGAGAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................AGAG------AGAGAGAGAGAGAGAG.............................20200.102000000000000000000000000000000200000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TAA--GAGAGAG------AGAGAGAGAG...................................20200.102000000000200000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................GAGAG------AGAGAGAGAGAGAGAGAAGA.........................25200.051000000000000010000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................GAG------AGAGAGAGAGAGAGAG.............................19200.051000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................A--GAGAGAG------AGAGAGAGAGAGAGAGA............................25200.051000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................AGTGAG---AGAGAGGGA--------GAGA.....................................................................................................................................................................................................................................................................19200.051000000001000000000000000000000000000000000000000000000000000000
droGri2
ACTACATTCATCCTA-----------------------------------------------------AAATGAAAATTGCTTTATAAAAATATAA-ATTTGTTGTAA-GGCTACAGT---TGCTAAAGA-----GAG--------A------GAGAGAGGTGGATACAG--ATAG---AG--------ATTG---------ACATAGAGATAG--AAATAGATA-------GATAGATCGAT-CGAGATA--GAGATGGAGATAGAGATAGAG----ATGGATAGAGC-----TTTA---------------------GATAA----AGATTGAT-----------------AGAGAGAGAGAGAGAG------AGAGAGATAGAGAGA-AAGAGAGAGAGATAGAGAGAAAGAGAGAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AGAGATAG----------------------------------------AGATAG------------------------------------------------------------------------------------AGATAGAGA------TAGAGATAGAGATAGAG--ATAG---AG--------ATAG---------AGATAGAGATAG--AGATAGAGA-------TAGAGATAGAG-ATAGAGA--TAGAGATAGAGATAGAGATAG----AGATAGAGATA-----GAGA---------------------TAGAG----ATAGAGAT-----------------AGAGATAGAGATAGAG------ATAGAGATAGAGATA-GAGATAGAGATAGAGATAGAGATAGAGATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................AT-----------------AGAGATAGAGATAGAG------ATA..........................................21200.05101000
.....................................................................................................................................................................................................................................................................................................................................................................ATAGAGATAGAG------ATAGAGATA....................................21200.05101000
.........................................................................................................................................................TAGAGATAGAGATAGAG--ATAG---AG--------ATAT---------..........................................................................................................................................................................................................................27200.05100100
.............................................................................................................................................TAGAGA------TAGAGATAGAGATAGAG--ATAT---.................................................................................................................................................................................................................................................27200.05100100
...................................................TAG------------------------------------------------------------------------------------AGATAGAGA------TAGAGATAGAGATAT............................................................................................................................................................................................................................................................27200.05100100
...........................................................................................................................................................................................................................................................................................................................................................................ATAGAG------ATAGAGATAGAGATA-.............................21200.05101000
.....................................................................................................................................................................TAGAG--ATAG---AG--------ATAG---------AGATAGAGATAT--............................................................................................................................................................................................................27200.05100100
..............................................................................................................................................................................................................................................................................ATAG----AGATAGAGATA-----GAGA---------------------TA...................................................................................................21200.05101000
........................................................................................................................................................................................................................................................................................................................................ATAGAGAT-----------------AGAGATAGAGATA......................................................21200.05101000
..................................................................................................................................................................................................................................................................ATAGAGATAGAGATAG----AGATA.........................................................................................................................................21200.05101000
........................................................................................................................................................................................................................................................................................ATAGAGATA-----GAGA---------------------TAGAG----ATA.........................................................................................21200.05101000
..............................................................................................................................................................................................................................................................................................ATA-----GAGA---------------------TAGAG----ATAGAGAT-----------------A..................................................................21200.05101000
.............................................................................................................................................................................................................................................ATAGAG-ATAGAGA--TAGAGATA...............................................................................................................................................................21200.05101000
.....................................................................................................................................................................TAGAG--ATAG---AG--------ATAG---------AGATAGAGATAA--............................................................................................................................................................................................................27200.05101000
..............................................................................................................................................................................................TAG---------AGATAGAGATAG--AGATAGAGA-------TAT.........................................................................................................................................................................................27200.05100100
........................................................................................................................................................................................................................................................................ATAGAGATAG----AGATAGAGATA-----..............................................................................................................................21200.05101000
...........................................................................................................................................................................................................................TAGAGA-------TAGAGATAGAG-ATAGAGA--TAT....................................................................................................................................................................27200.05100100
.....................................................................................................................................................................................................................................................TAGAGA--TAGAGATAGAGATAGAGATAT----..............................................................................................................................................27200.05100100
................................................................................................................................................................................................................................A-------TAGAGATAGAG-ATAGAGA--TA.....................................................................................................................................................................21200.05101000
..........................................................................................................................................................................................................................ATAGAGA-------TAGAGATAGAG-ATA.............................................................................................................................................................................21200.05101000
.........................................................................................................................................................TAGAGATAGAGATAGAG--ATAG---AG--------ATAA---------..........................................................................................................................................................................................................................27200.05101000
.............................................................................................................................................TAGAGA------TAGAGATAGAGATAGAG--ATAA---.................................................................................................................................................................................................................................................27200.05101000
.....TAG----------------------------------------AGATAG------------------------------------------------------------------------------------AGATAGAGA------TAGAGATAA..................................................................................................................................................................................................................................................................27200.05101000
..............................................................................................................................................................................................................................................TAGAG-ATAGAGA--TAGAGATAGAGATAT........................................................................................................................................................27200.05100100
....................................................................................................................................................................................................................................................ATAGAGA--TAGAGATAGAGATA.........................................................................................................................................................21200.05101000
..........................................................................................................................................................................................................................................................A--TAGAGATAGAGATAGAGATA...................................................................................................................................................21200.05101000
........................................................................................................................................................................................................................................TAGAGATAGAG-ATAGAGA--TAGAGATAT..............................................................................................................................................................27200.05100100
.............................................................................................................................................................................................ATAG---------AGATAGAGATAG--AGATA.......................................................................................................................................................................................................21200.05101000
...................................................TAG------------------------------------------------------------------------------------AGATAGAGA------TAGAGATAGAGATAA............................................................................................................................................................................................................................................................27200.05101000
............................................................................................................................................................................................................ATAGAGATAG--AGATAGAGA-------TA..........................................................................................................................................................................................21200.05101000
.............................................................................................................................................................................................................TAGAGATAG--AGATAGAGA-------TAGAGATAT...................................................................................................................................................................................27200.05100100
...............................................................................................................................................................TAGAGATAGAG--ATAG---AG--------ATAG---------AGATAT....................................................................................................................................................................................................................27200.05100100
.......................................................................................................................................................................................................................................................................................................................................................................................ATAGAGATAGAGATA-GAGATA.......................21200.05101000
..................................................................................................................................................................................................................ATAG--AGATAGAGA-------TAGAGATA....................................................................................................................................................................................21200.05101000
.............................................................................................................................................................................TAG---AG--------ATAG---------AGATAGAGATAG--AGATAT......................................................................................................................................................................................................27200.05100100
.........................................................................................................................................................................................................................................................................................................A---------------------TAGAG----ATAGAGAT-----------------AGAGATA............................................................21200.05101000
...............................................................................................................................................................TAGAGATAGAG--ATAG---AG--------ATAG---------AGATAA....................................................................................................................................................................................................................27200.05101000
.............................................................................................................................................................................................................................................................................................................................................................................................ATAGAGATA-GAGATAGAGATA.................21200.05101000
.....TAG----------------------------------------AGATAG------------------------------------------------------------------------------------AGATAGAGA------TAGAGATAT..................................................................................................................................................................................................................................................................27200.05100100
...................................................................................................................................................................................................................TAG--AGATAGAGA-------TAGAGATAGAG-ATAT............................................................................................................................................................................27200.05100100
dp5
GAATTTAT---TGCAAAGGAGAGGCAGAGAGACTTTACAATCAGAGAGAGT-----------------------------------------------------------------------GTGAGAGA-----GAG--------T------GAGAGTGAGAGAGAGTG--AGAG---AG--------AGCG---------AGAGAGAGAGTG--AGAGAGTGA-------GAGAGAGAGAG-TGAGAGA--GAGTGAGAGAGAGAGAGAGTG----AGAGAGAGAGA-----GAGT---------------------GAGAG----AGAGAGAG-----------------TAAGAGTGAGAGAGAG------AGTAAGAGAGAGAGA-GTAAGAGAGAGAGAGAGAGAGAGAGTGAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................CAGAGAGAGT-----------------------------------------------------------------------GTGAGAGA-----GA...........................................................................................................................................................................................................................................................................................2030.6720200000000
............................................................................................................................................................................................................................................................................................................................................AGAG-----------------TAAGAGTGAGAGAGAG------AG...........................................2220.5010000100000
..........................................................................................................................................................................................................AGAGAGAGAGTG--AGAGAGTGA-------GAGAG.......................................................................................................................................................................................2630.3310100000000
.....................................................................................................................................................................................................................................................................GAGAGAGAGAGTG----AGAGAGAGA.....................................................................................................................................22200.0510100000000
.........................................................................................................................................................................................................................................................................................GAGAGAGA-----GAGT---------------------GAGAG----AGAGA.......................................................................................22200.0510100000000
..................................................................................................................................................................................................................................................................AGAGAGAGAGAGAGTG----AGAGAGAGA.....................................................................................................................................25200.0510000001000
.......................................................................................................................................................................................................................................................GAGA--GAGTGAGAGAGAGA.........................................................................................................................................................18200.0510000100000
......................................................................................................................................................................................................................................................................................AGAGAGAGAGA-----GAGT---------------------GAGAG----AGAGA.......................................................................................25200.0510000001000
.....................................................................................................................................................................................................................G--AGAGAGTGA-------GAGAGAGA....................................................................................................................................................................................18200.0510000100000
droPer2
AAAGAAGA----------------------------------------GAGGGAATGA------GC---------------------------------TAAAGATAC------------AAAAAGA--AGTGAG---GGAAAGATA----------------------------------------------------------AAAAGATAC--AAAAGAAGA-------AAGGGAAGGAT-AGAAAGA--TACAAAAGGAAGCAAAG--------AAATGA-----GCGAAAGATACAAAAAGAAGAGCGGGAATGGG-CGAAAGAT------TCA-AAAAGA-------AGAGAGG--GAAGGAT------AGAAAGATACAAAAAGAAGTGAGGGAAAGATATAAAGATACAAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ACTGAGAC----------------------------------------TGAGAC--TGAGACTG-AGACTG------------AGACT-GAGACTGAGCAA---------------------GAGAGACA-----GAG--------A------GACAGAGAGACAGAGAG--ACAG---AG--------AGAC---------AGAGAGACAGAG--AGACAGAGA-------GACAGAGAGAC-AGAGAGA--CAGAGAGACAGAGAGACAGAG----AGACAGAGAGA-----CAGA---------------------GAGAC----AGAGAGAC-----------------AGAGAGACAGAGAGAC------AGAGAGACAGAGAGA-CAGAGAGACAGAGAGACAGAGAGACAGAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AGAGATAG----------------------------------------AGATAG------------------------------------------------------------------------------------AGATAGAGA------TA------GAGATAGAG--ATAG---AG--------ATAG---------AGATAGAGATAG--AGATAGAGA-------TAGAGATAGAG-ATAGAGA--TAGAGATAGAGATAGAGATAG----AGATAGAGATA-----GAGA---------------------TAGAG----ATAGAGAT-----------------AGAGATAGAGATAGAG------ATAGAGATAGAGATA-GAGATAGAGATAGAGATAGAGATAGAGATSizeHit CountTotal NormTotal
No Reads
droKik1
AAAGGTGA-GAGATGATGTT------AAAAAGC------------------------------------------------------------------GTATAAGCCAAGAAAGAGTAAAAGAGAGAGA-----GAG--------A------GAGAGAGAGAGAGAGAG--AGAG---AG--------AGAG---------AGAGAGAGAGAG--AGAGAGAGA-------GAGAGAGAGAG-AGAGAGA--GAGAGAGAGAGAGAGAGAGAG----AGAGAGAGAGA-----GAGA---------------------GAGAG----AGAGAGAG-----------------AGAGAGAGAGAGAGAG------AGAGAGAGAGAGAGA-GAGAGAGAGAGAGAGAGAGAGAGAGAGAGSizeHit CountTotal NormTotal
No Reads
droFic1
AGAGAAAG----------------------------------------AAGGAA------------------------------------------------------------------------------------AGAAAGGAAGGAAGA------------AA--------G---AA--------AGAA---------AGGAAGGAAGAG--AGAGAGAGA-------GAAAGAAAGAA-AGAAAGA--AAGAAAGCAAGGAAGGAAGAG----AGAGAGAGAAA-----GAAA---------------------GAAAG----AAAGAAAG-----------------AAAGAAAGAAGGAAGG------AAGGAAAGAAGGAAA-GAAAGAAAGAAAGAAAGAAAGAAAGAAAGSizeHit CountTotal NormTotal
No Reads
droEle1
GATGAAAG----------------------------------------AAAAAG------------------------------------------------------------------------------------GAAAGAAGA------AG-AAGAAAAGAAAAGG--AAAG---AA--------GATGAAGAAAGAA--------AAGGAA--AGAAGAA-----------GAAGA---AAAAAAG--GAAAGAAGAAGAAGAAAAAAA----GGAAAGAAGAAGAAGAAAAA------------------------AC-----GGAAAGA-----------------AGAAGAAGAAAAAAAA------GGAAAGAAGAAGAAG-AAAAAGAAGGAAAGAAGAAGAAGAAAAAGSizeHit CountTotal NormTotal
No Reads
droRho1
ACGCAACTGAGAACTACGCC---------------------------------------------------------------GATGAAGATGGAGAGACTGTTGTGCAGACTTCGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAGTSizeHit CountTotal NormTotal
No Reads
droBia1
CAGAGAGA----------------------------------------GAGAGA------------------------------------------------------------------------------------GAGAGAGAG---------------AGAGAGAG--AGAG---AG--------AGAG---------AGAGAGAGAGAG--AGAGAGAGA-------GAGAGAGAGAG-AGAGAGA--GAGAGAGAGAGAGAGAGAGAG----AGAGAGAGAGA-----GAGA---------------------GAGAG----AGAGAGAG-----------------AGAGAGAGAGAGAGAGAAGGAAAGAGAGAGATAGAGAAAGGAGAGAGAGAGAGAAAAAAAGAGAGGGSizeHit CountTotal NormTotal
No Reads
droTak1
AGCGAAAG----------------------------------------GGAACT------------------------------------------------------------------------------------GGAGAGGGA------GC--------------------------------------------------------------------------------------------------------------------------------GGGAAA-----GGGA---------------------GAGGG----AGAGGGAA-----------------AGGGAGCGAGACAGAG------AGAGGGAAAGAGAAA-GAGATAGAGAAAGGGATAGGGAGAGAGATSizeHit CountTotal NormTotal
No Reads
droEug1
GAAGAGGA----------------------------------------AAAAAA------------------------------------------------------------------------------------GAGAAAAGA------AG-AGG--------------------AA--------AAGA-GGAGAGAG--------GAGGAA--AAAAAGAGGAAAGAAGAGGAGAAAA-------GGAGAGAAGAGGAAAA----AAGAAGAAAGAAGA-----------------------------------GG-AGA---AGAGGAGA-----------------GAAGAGGAAAAAAAGA------GAAAAGAAGAGGAAA-AGAGGAGAGAAGAGGAAAAAAGAGAGAGASizeHit CountTotal NormTotal
No Reads
dm3
AAAGACAA---AG-----------------------------------AGAAGG----AGAAAG-ACATAG------------AGAATGGAGAAAGAGAAA---------------------GGATGATA-----GAG--------A------AAGAGA----A-AAGAG--AAAG---AG--------AAAG---------AGAAAGAGAAAG--AGAAAGAGA-------AAGAGAAAGAG-AAAGAGA--AAGAGAAAGAGAAAGAGA-AT----AGAGAAAGAGA-----AAGA---------------------GAAAG----AGAAAGAG-----------------AAAGAGAAAGAGAAAG------AGAAAGAGAAAGAGA-AAGAGAAAGAGAAAGAGAAAGAGAAAGAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................TA-----GAG--------A------AAGAGA----A-AAGAG--AAA.....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................GAGA----A-AAGAG--AAAG---AG--------AA.....................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.............................................................................................AAGAGAAA---------------------GGATGATA-----GA...........................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................ATA-----GAG--------A------AAGAGA----A-AAGA...........................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................GA-AT----AGAGAAAGAGA-----AAGA---------------------TG...................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAGAAGAG----------------------------------------AAGAGG------------------------------------------------------------------------------------AGGAAAAAAGAAAAG------------AA--------GAGGAA--------AGAA-GGAAAGAA--------GAGGAA--AGAAGGA------------AGGA-GGCAAAAAG--AAAGGAAGAGGAAAGAAGAAG----AGAAGAGGAAA-----GAAG---------------------ACGAG----AAGAGGAA-----------------AGAAGAAGAGATGAGG------AAAGAAAAAGAGAAG-AGAAAAGAAAAAGAGAAGAGGAAAGAAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................AAG-AGAAAAGAAAAA.................1590.56500000000005000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAAAAAGAGAAGA..........1720.50100000001000000000
droSec2
AAGGAAAA----------------------------------------AAGAAG------------------------------------------------------------------------------------TGGAAAGAAAAAGAG------------AA--------GAGGAA--------AGAA-----------GAAAA-GAGAAA--AGAAGAAGAGA---AGAGGAAGA-GGAAAGAAG--AAAGGAAGAGGAAAGAAGAAA----GGAAGAAGAAA-----GAAG---------------------AAAAG----AAGAAGAA-----------------AAAAGAAA----GGAA------GAGGAAAGAAGAAGA-GAAGAGAAAAGAAGAAGAGAAGAGAAAAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................GAAGAAA----GGAAGAAGAAA-----A.............................................................................................................................1930.3310001
................................................................................................................................................................................................................................................................................................................................AAAG----AAGAAGAA-----------------AAAAGAAA----A......................................................2140.2510001
droYak3
AAGGAGAA----------------------------------------AGGAAG------------------------------------------------------------------------------------AGGAAAGGAGAAAAG------------AG--------G---AA--------ATAA-GAAAAGAA--------GAGGAA--AGGAAAAGAGA---AGAAGAAAGGA-AAAG--------GGAGGAGGAAAGAAGAAA-GAAAGAGGA-----GGAGAAAAGACG------------------AAAAG----AAAAGCAG-----------------AGAAGAAAAGAAGAGG------AAAGAAGAAAGGAAG-AGGAAAAAAGAAAAGAAGAAGAGAGAAGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AAAGAAGC----------------------------------------AAAGAAACAG------CCT----------------AGTGTGCGAGAAGAGAAGGCTTTCC---------------------GAA---GAG--------A------AAGAGAGGGAGAGAAAG--AGAG---AG--------AGAG---------ACCGAGAGATAT--ATAGAGAGA-------GAGAGAAAGAG-AGTCAGA--GAGTCAGAGAGATAGAGCGAT----AGAGAGAGAGA-----GAGA---------------------GAGAG----AGAGAGAG-----------------AGAGAGAGAGAGTGAG------AGAGACAGAGAGAGA-GAGAGAGAGAGAGAGAGAATGAGAGAGAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................GACAGAGAGAGA-GAGAGAGAGA...................22200.0510000100
...................................................................................................................................................................GAGAAAG--AGAG---AG--------AGAG---------A.........................................................................................................................................................................................................................18200.0510000100
........................................................................................................................................................................................................................................................................................................GA---------------------GAGAG----AGAGAGAG-----------------AGAGA..............................................................20200.0510000100
...................................................................................................................................................................................................................................................................................................................................G----AGAGAGAG-----------------AGAGAGAGAGA........................................................20200.0510000100
................................................................................................................................................................................................................................................................................................................................................................................G------AGAGACAGAGAGAGA-GA...........................18200.0510100000
..........................................................................................................................................................................................................................................................................................................................................................................................GACAGAGAGAGA-GAGAGA.......................18200.0510001000
.................................................................................................................................................................................................................................................................................................................................GAG----AGAGAGAG-----------------AGAGAGAGA..........................................................20200.0510000100
...............................................................................................................................................................................................................................................................................................................................GAGAG----AGAGAGAG-----------------AGAGAGA............................................................20200.0510000100

Generated: 05/18/2015 at 02:41 AM