ID:

dmo_2477

 Coordinate:

scaffold_6680:13286651-13286801 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.5 -30.4 -30.4

Flybase annnotation

CDS [Dmoj\GI13448-cds]; exon [dmoj_GLEANR_13373:21]; intron [Dmoj\GI13448-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+
Gypsy8-I_Dpse-intLTRGypsy+
mature
star
  1. scaffold_6308:322356-322375 -
  2. scaffold_6308:371183-371202 -
  3. scaffold_6473:7296758-7296777 +
  4. scaffold_6473:10316854-10316873 +
  5. scaffold_6473:11873959-11873978 +
  6. scaffold_6496:1901730-1901749 -
  7. scaffold_6496:8618796-8618815 +
  8. scaffold_6496:22697680-22697699 +
  9. scaffold_6500:3175631-3175650 -
  10. dmo_1544  scaffold_6500:13679593-13679612 -
  11. scaffold_6500:22731997-22732016 -
  12. scaffold_6540:7331202-7331221 -
  13. scaffold_6540:13538424-13538443 +
  14. scaffold_6680:12450824-12450843 +
  15. dmo_2477  scaffold_6680:13286659-13286678 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCACGACAGCAACATCGCTCACAGCAACAGCAGCAGAGATCGAACAACAAATTAACAACAACAACAACAGCATCAACAATGGGCCTGGGCCTTGGCAGCGGTGTGGGCGTGGCAATCATCAACAACAAATGCTAATGCCAAATGAATTGCTGCTGCAGGCAAGTCAATTAACAGCCGCCGACTGCAATCACAATTTAAGATATGTGCCGCCCCTGCCCACTGCCCCGCCCCCCATACAGGCAGCGGCCGGC
**********************************************************.........(((..(((....)))..))).((((((((((((((...(((((((((...............)))).)))))......)))))))))).))))....*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V049
head
 M060
embryo
 M046
female body
 V056
head
............................................................................................................................................AATGAATTGCTGCTGCAGGCAAGT....................................................................................... 24 0 1 1.00 1 1 0 0 0
...................................................................................CCTGGGCCTGGACAGCGGT..................................................................................................................................................... 19 2 2 0.50 1 0 1 0 0
..........................................................CAACAACAACAGCATCAACA............................................................................................................................................................................. 20 0 15 0.07 1 0 0 1 0
............................................................................................TGGCAGCGTTGTGAGCGGG............................................................................................................................................ 19 3 20 0.05 1 0 0 0 1
......................................................ACAACAACAACAACAGCATCA................................................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

CGTGCTGTCGTTGTAGCGAGTGTCGTTGTCGTCGTCTCTAGCTTGTTGTTTAATTGTTGTTGTTGTTGTCGTAGTTGTTACCCGGACCCGGAACCGTCGCCACACCCGCACCGTTAGTAGTTGTTGTTTACGATTACGGTTTACTTAACGACGACGTCCGTTCAGTTAATTGTCGGCGGCTGACGTTAGTGTTAAATTCTATACACGGCGGGGACGGGTGACGGGGCGGGGGGTATGTCCGTCGCCGGCCG
***************************************************************************************.........(((..(((....)))..))).((((((((((((((...(((((((((...............)))).)))))......)))))))))).))))....********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
 V056
head
 V049
head
 V041
embryo
.......................................................................................................................................................................................................TCTACACGGCGGGGTCGG.................................. 18 2 13 10.92 142 132 8 2 0 0 0
..................................................................................................................................................................................................AATTGTCTACACGGCGGGGGC.................................... 21 3 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................................................................................................TCTACACGGCGGGGTCGGGT................................ 20 2 1 1.00 1 0 0 1 0 0 0
.................................................................................................................................................................................................AAATTGTCTACACGGCGGG....................................... 19 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................AATTGTCTACACGGCGGGGTCGG.................................. 23 3 1 1.00 1 0 0 1 0 0 0
...................................................................................................................................................................................................ATTGTCTACACGGCGGGGTCGG.................................. 22 3 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................CAAATTGTCTACACGGCGGGG...................................... 21 3 2 1.00 2 1 1 0 0 0 0
....................................................................................................................................................................................................TTGTCTACACGGCGGGGTCGG.................................. 21 3 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................................................................................................CGGCGGGGTCGGTTGAGGGG.......................... 20 3 20 0.45 9 1 8 0 0 0 0
...........................................................................................................................................................................................................CACGGCGGGGTCGGTTGAGGG........................... 21 3 3 0.33 1 0 1 0 0 0 0
.........................................................................................................................................................................................................TACACGGCGGGGTCGGTTGAG............................. 21 3 3 0.33 1 1 0 0 0 0 0
..........................................................................................................................................................................................TCGTGTTAAATTCTTTACACGAC.......................................... 23 3 4 0.25 1 0 0 0 1 0 0
...................................................................................................................................................................................................ATTGTCTACACGGCGGGG...................................... 18 2 4 0.25 1 0 1 0 0 0 0
..................................................................................................................................................................................................................GGGACGAGTGACGGGGCAGGT.................... 21 3 4 0.25 1 0 0 0 1 0 0
........................................................................................................................................................................................................CTACACGGCGGGGACGGTT................................ 19 2 4 0.25 1 0 1 0 0 0 0
............................................................................................................................................................................TCGGCGGCGGACGCGAGTGTT.......................................................... 21 3 4 0.25 1 0 0 0 1 0 0
...........................................................................................................................................................................................................CACGGCGGGGTCGGTTGA.............................. 18 2 13 0.23 3 2 1 0 0 0 0
..................................................................................................................................................................................................AATTGTCTACACGGCGGGGTC.................................... 21 3 9 0.22 2 1 1 0 0 0 0
...................................................................................................................................................................................................ATTGTCTACACGGCGGGGTC.................................... 20 3 15 0.20 3 0 3 0 0 0 0
.....................................................................................................................................................................................................TGTCTACACGGCGGGGTCGG.................................. 20 3 16 0.19 3 2 1 0 0 0 0
..................................................................................................................................................................................................AATTGTCTACACGGCGGGGT..................................... 20 3 17 0.18 3 2 1 0 0 0 0
........................................................................................................................................................................................................CTACACGGCGGGGTCGGG................................. 18 2 6 0.17 1 1 0 0 0 0 0
....................................................................................................................................................................................................TTGTCTACACGGCGGGGTCG................................... 20 3 12 0.17 2 0 2 0 0 0 0
.......................................................................................................................................................................................................TTTACACGGCGGGGTCGG.................................. 18 2 7 0.14 1 1 0 0 0 0 0
...................................................................GTCGTAGTTGTTACCAGGC..................................................................................................................................................................... 19 2 7 0.14 1 0 0 0 0 1 0
.............................................................................................................................................................................................................CGGCGGGGTCGGTTGAGGGGG......................... 21 3 8 0.13 1 0 1 0 0 0 0
.....................................................................................................................................................................................................TCTATACACGGCGGGGTCA................................... 19 2 8 0.13 1 0 0 0 1 0 0
..........................................................................................................................................................................TGTGGGTGGCTGACCTTAG.............................................................. 19 3 11 0.09 1 0 1 0 0 0 0
..................................................................................................................................................................................................................GGGACGAGTGAGGGGGCGGGT.................... 21 3 11 0.09 1 0 0 0 0 1 0
.................................................................................................................................................................................................AAATTGTCTACACGGCGGGGT..................................... 21 3 11 0.09 1 1 0 0 0 0 0
.......................................................................................................................................................................................................TCTACACGGCGGGGTCGCGT................................ 20 3 13 0.08 1 0 0 1 0 0 0
...........................................................................................................................................................................................................CACGGCGGGGTCGGTTGAGG............................ 20 3 17 0.06 1 1 0 0 0 0 0
...............................TCGTCTATATCTTGTTGGTT........................................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 1 0 0
..................................................................................................................................................................................................AAATGTCTACACGGCGGGG...................................... 19 3 20 0.05 1 0 0 0 0 0 1
.........................................................................................................................................................ACGTCCGATCAGGTAATG................................................................................ 18 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6680:13286601-13286851 + dmo_2477 GCAC-GACA--GCA---------------------------------------------------------------------------------A---------CATCGCTCACAGCAACAGCAGCAG-------------------------------------------------------------------------AGATCGAACAACAAATTAACAACAACAACA------------------------------ACAGCA------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------CAACAATGGGCCTGGGCCTTGGCAGCGGT-----GT--------------------------------------GGGCGTGG------------CAATCATCAACAACAAATGCTAATGCCAA-----ATGAATTGCTGCTGCAGGCAA--------------------------------------------------------------------------GTCAATTAACAGCCGCC--GACTGC---------------------------------------------------------------AATC-ACAATTTAAGATATGTGCCGCCCCT-------------------------------------------------------------------------------------------------------------GCCCACTGCCCCG-C----C---------------------CCCC--------------ATACA-----------------------------------G------------------------GCAGCGG-CCGGC
droVir3 scaffold_13049:14027990-14028258 - GTGGCC---CCA--AAGCCG------------------------------C-GACA------------------------------------GCAG---------CAGCAGCAACGTCAG------------CAGCAGCAG------------------CA------ACA----------------------------GCAACGGCTGAGCAACAAATTAGCAACA------------------------------ACAACAACAGCC------------------------------ACG-----------------------------------------------------------------------------------------------------------------------------------------G------------CAACAATGGGCTTGGGCATGGGCG-----------G--------------------------------------GGGCGTGG------------CGATCATCAACAACAAATGCTAATGCCAA-----ATGAATTGCTGCTGCAGGCAA--------------------------------------------------------------------------GTCAATTAGCTGCCGCC--GACTGC---------------------------------------------------------------AATC-AGAATTTAAGATATGTACCGCCCAT-------------------------------------------------------------------------------------------------------------GCCAAGTGCCACG-C----C---TA-------TG-------------------------ACACA-----------------------------------A------------------------CCCCTGG-CTGGC
droGri2 scaffold_15110:16173418-16173689 + GCAGCT---CCA--AAGCCA------------------------------C-GACA---------------------------------------G---------------CAACAACATCGTCAGCAG---CAG------CA------------GCAACAA---CA-------------------------------GCAGCG------CAACAAATTGGCAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAACAATC------------------GGCCTGGGCATGGGAG-----------T--------------------------------------GGGCGTGGGGGGTGGGGCAACAATCATCAACAACAAATGCTAATGCCAA-----ACGAATTGCTGCTGCAGGCAA--------------------------------------------------------------------------GTCAATTAACTGCTGCC--GACTGT---------------------------------------------------------------AATC-AGAATTTAAGATATGTGCCGCCAAT-------------------------------------------------------------------------------------------------------------GCCAAGTGCCACG-T----C----------GCTG-----C------------AAC-----------AGCAGCAACA-----------------------A------------------------TTGTTGG-ACGGA
droWil2 scf2_1100000004762:4626686-4626943 + ACAC-AACA--ACA---------------------------------------------------------------------------------G---------CAACAATACCAGCAGCAGCAGCAG---CA----------------------------------------------------------------G-----------CAACAAATTAGCGATG------ACAACAG------------------------GAACA------------------------------ACA-----------------------------------------------------------------------------------------------------------------------------------------A------------CAACAAT-------------------------------------------------------------------------GG------------CTATCATCAACAACAAATGCTAATGCCAA-----ACGAATTGCTGCTGCAGGCAA--------------------------------------------------------------------------CACAATTAGCTTCCACCTCGAATAC---------------------------------------------------------------AGTTGGAAATTTAAGATATGTGCCGCCCATAGTACCGCCTAATGCTGCCCACTTGCATTCACACCCACATCCATTGG-----------------------------------------------------------------------------------------------------C------------AAC-----------AGCAGCAACA------------------------------------------------GCAGCAG-ATGGT
dp5 2:468824-469042 + CGGC-AGCA--ACG------------------------------------------GCA--C---------------------------------------------ACAGCAGCAGGGCCAA--GAAG---TA---------------------A------------------------------------------------------CTACCTATTAACAA------------------------------------------------TCCACAAGTACACCAATCACCAATCACCAATG--------------------AA--C-----------------------------------------AACCAACAACAACA---------------------------------------------ACAGCTACAG------------A------------------------------------------A---A---CAAACACCCAAAGAAAGACATTTG-------------------------------------------------------------------------------------------------AC-----------------------------------------------AATCTTCTTGT------------ACTATCCCCCAAATGTAT--------------GC--------------------------------------------------------CAAT------------------------------------------C-----------------------------------------GATTCTG------TATCTCTGTC---------------ACT-C----T---------------------ACCCGTTCA--------------------------------------------------------------------------GCAGGT-GTCGGT
droPer2 scaffold_9:1077018-1077319 - GCTGCC---CCA--CC-------------------------------------------------------------------------------A---------AATCTGCGACAGTTGAATCAGCAG---CAA------CA------------GCA---ACGTCA-------------------------------GCAGCACGCCAGCAGCAAATTGGCAACA-------------------------------------------------------------GCA-------------------------------------------------------------------------------------------------ACACGGGCTTT---------------------------------------AGCC------ACATCAAGATCGGGAATGGC-------GCCA--GTG---------------CCAG----TGCCAGTGCCAGTGCAAGTGCCAGTGG------------AGAACATCAAGCACAATTGCTAATGCCCA-----ATGAATTGCTGCTGCAGGCAT--------------------------------------------------------------------------CCCGATTAGGTTCTTTC--GCCACC---------------------------------------------------------------GTCG-ACAATTTGAGATATGTACCGCCGCTGACTCCGGTCAAT-----------------------------------------------------------------------------------------------------GGTCCAC--------------------TGCGACGGCCCC-------------------T-----------------------------------G------------------------GCGGAT-GGCGGG
droAna3 scaffold_13340:11764751-11765013 - ACACCA---GC--AGCA------------------------------------------------------------------------------A---------CAACAGCAACTCCAACACCAGCAG---CAA------CA------------CCAACAA---CACTA----------------------------TCAACA-----------TGCCAT--CCA---ACAACAGCAGC---------------------AAC------------------------------------------AGGCTA----------GCAAAA-TCTCATATCGTGGAATTTTTACCACCACAGGCAACGCG--------------------ATGAATGCAGCAGCCGCAGCCGCAGCGG-CGCAACAGCAGCAGCAACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCTTCCCTCCCCGCAGCTG--------------------------------------------------AGCGT--------------------TC----------------------------------TGC-------------------------------------------------------------------------------------CCGGCCAAATGTCG----CCGCC-----------------------------------------------CTC--------------GAACA-----------------------------------GTCT---------------GG----GCAACAG-CTGGG
droBip1 scf7180000396589:2062936-2063144 - GCAACA---AC--AACA------------------------------------------------------------------------------G---------CAG---CTGCAGCAACAACAGCAG---TTG------CA---------ACAACA---ACAGCAGCA----------------------------GCAACA-------------------A------CA------A---------C------------A--------------------------------------------------------------------------------------------------------------------GCAGTTACA------------------------------------------GCAACAACAACCGATCATGCAA------C---------------------------AAGATCCCC-----------------------------------------------------AGCAGCAACAGCAGTCG-----------------------------------------------------------CC-----------------------------------------------AAG----------GCTGCC--GACCAC---------------------------------------------------------------TCCC-ACAGG--ACGACAAACGCCGCGTAC-------------------------------------------------------------------------------------------------------------CCCGCAGTCCACC-A----C----------GCCG-----CAACCCATCCAGTCG---------------------------------------------------------------------------C-CCCAAC
droKik1 scf7180000302510:446471-446710 - CAGC-AGCC--ACA------------------------------------------TCTCACGCAGTTGCAGACGCCGCATAATCAAAACTACCAGCAA------CAGCAGCAAGCTCAG------------GC----------------------------------------------------------------------------CCAAAA-GTTGCCACT------GCAACAG------CAACAGCAGCAGCAGCAACAGCA------------------------------AACGCAGCAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACTACCAGCAACAACACAATTACACTACCCAGCAACAGC---------------------------------------------------------------AGTC-AGTCCCTGAGAAACCCGCCTCAGCACAAC---------------------------------------------------------------------------------------------------------AACAAGCCCCAC-------TTCCCACTGCCG--------T--------AAGCGA---------------------------------------------------------------------------T-GCCAGC
droFic1 scf7180000454105:1053569-1053804 - GCAC-AGCA--GCA---------------------------------------------------------------------------------A---------CAGCAGCAACAGCAACAACAGCAG---CAA------CA------------ACAGCAACATC----------------------------------AGCA-------------------G------CAACAGCAGC---------------------AAC------------------------------------------AGGTGCGCCTGCTCACGCAAAAGACACA-----------------AACTGTACTCATTCCA----TTCAACAACA---ACA------------------------------------------ACAACAACAATC---------------------------------------ACATA---------A---ACAA----CGCTCCTGCCAAGACAACAG-------------------------------------------------------------------------------------------------CC-----------------------------------------------AAGAAATCCAG------------TCTGTCCGCCGGGAACAC--------------AA--------------------CCAC------------------------------------------------------------------------------C-----------------------------------------ACGACCA------TATTGCAGGC------------------------------------------------------AGCCA---------------------------------------------------------------------------A-GCCGGC
droEle1 scf7180000491199:1914995-1915210 - GCCC-AACA--GCA---------------------------------------------------------------------------------G---------CAACAGCAACAGCAGCAGCAGCAA---CAA------CAGCAGCAACAGCAACA---ACAGCA---GGCAATGGCTGTGGGCGGCTCGGCGG---------------------------------------------------------------------------GCGGACAAGTGCAACAGCA-------------------------------------------------------------------------------------------------ACAAGTGCAGCAGGTGCAGCAGCAGCAAGTCCAGCAGCAGCAGCAGCAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTACAA-------------------------------------------------------------------CATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAAATCATA--G---------------------------------ACGCCTCGGGCAACATAACA--------------------------------A------------------CG----GCAACGA-CGAGC
droRho1 scf7180000779333:133900-134104 + GCCA-CCCA--CCA---------------------------------------------------------------------------------GCAACATCAGCATT-TGAGCAGCAACAA---------CAA------CA------------ACA---A---CGGCA----------------------------GCAACA-------------------C------AC------A---------C------AGCCAA--CAG--AATACGCACAACAACAACAACAACACATTGCCAGTG--------------------GG--G-----------------------------------------GCACAACAGCAACA---------------------------------------------GCAGCAGCATC------------------------------------------------------AACATC-------------------------------------------AACAG------------------------------------------------------------------------CAGCGTGCAACATTG----------------------------------------------------------------------------------------CAACAT--------------------CCGC------------------------------------------------------------------------------C-----------------------------------------GCTGCCAAATAGCA-----------------------------------------------------------------------------------------------------------------A------------------CATCAAGCAGGC-TTC-GG
droBia1 scf7180000302113:1788567-1788803 - GCGC-AGCA--GCA---------------------------------------------------------------------------------G---------CATCTGCAGCAGCATCAGCAGCAGCAGCAGCATCAG------------------------CAGCA----------------------------GCAACA-------------------T------CT------G---------CAGCAGCAGCAGCAGCAGCC------------------------------CCAGCAGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------TGTTACGTC-----------------------------------------------------AGCAGCAACGGCAACTGCCCACGCAGG-----------------------------------------------------------------------------------CTGCCTACCAG-----------------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAGCAACATC-AGGAGCAACAGCAACAACAGCAACAGCAACTGAGGCAAT-----------------------------CGTTTGCCCACA-ATGCCTTCCCACTGC-G-----------------CAGCGG---------------------------------------------------------------------------C-AACAGC
droTak1 scf7180000415809:748253-748477 + CCTC-GGC--TG--GCAATC------------------------------AGGCTA---------------------------------------ACAA------CAATAACAATAGCAG------------CACCAACAACA------------ACAATAA---TA-------------------------------GCAACA-------------------A------CA---------------------ACAACAAT-------------------------AACAACGAGGAGCAAGTT--------------------A----------------------------------------------AGCAACACCAACA---------------------------------------------GCAGCAACAGC------------------------------------------------------AACAACAGCAGG---------CATCC------------------------------------------------------------------------------------------------------------AGCATAGCGGCCGCTGCAGCAGC--------------------------------------------------CGCCATGTACATGGATCCGATGCGCTACCAACATCCGCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCCGCATCCG--------C---------ATCCG---------------------------------------------------------------------------C-ACCAGC
droEug1 scf7180000409802:1796186-1796415 + GCAGCA---GC--AACA------------------------------------------------------------------------------A---------CAT---CAGCAGCAGCAGCAGCAG---CAG------CA------------ACAACAACATC----------------------------------AACA-------------------C------CAGCAGCAGCAACAC---C------AGCAAT------------------------------CACAGTCCCAACAG-----------------------------------------------------------------------CAGCA---A------------------------------TC------------CCAGCAGCAA--------------------------------------------------------------------------------------------------------------------CTTC--ATGCTTTAGCCCAGCAACATATGTTGCAACTGCAGCC------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACCATC---AGC-----------AGCAGCAACACAATGCCACAAGTGAATGATACAGTCAGTACCTGGGCTGGAACT----ATGGCGC-CTGGC
dm3 chr3L:7442994-7443244 + GCTGCG---GCA--GCTGCC------------------------------G-TCCA------------------------------------TCAGCAA------CAGCAGCAGGTGCAG------------CAGCAGCAG------------------CA------ACA----------------------------GCAACA-------------------C------CA------T---------CAGCAGCAACAGCAACAGCA------------------------------CCAGCAGCAGGTTG--CTGCCGTTGCGATG---------------------GCGGCCATGGCCAATTTGTTGCCGCAGCAGCAGTT---------------------------------------------GCTGCTGCATC------------------------------------------------------AGCAGAATCTGC---------TATCG------------------AATGCGGCGG------------------------------------------------------------------------TGGCC------------------ACAACGGTAACGG-------------------------------------------------------------------CGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAAGTTCCA--T---------------------------------TCACTGGTCGCAATACA-----------------------------------A------------------------ACAGGAG-CAGCA
droSim2 3l:7308378-7308625 + GCTGCG---GCA--GCCGCC------------------------------G-TCCA------------------------------------TCAG---------CAACAGCAGCAGGTG------------CAGCAGCAG------------------CA------ACA----------------------------GCAACA-------------------C------CA------T---------CAGCAGCAACAGCAGCAGCA------------------------------CCAGCAGCAGGTTG--CTGCCGTTGCGATG---------------------GCGGCCATGGCCAATTTGTTGCCGCAGCAGCAGTT---------------------------------------------GCTGCTGCATC------------------------------------------------------AGCAGAATCTGC---------TATCG------------------AATGCGGCGG------------------------------------------------------------------------TGGCC------------------ACAACGGTAACGG-------------------------------------------------------------------CGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGGGTTCCA--T---------------------------------TCACTGGTCGCAATACA-----------------------------------A------------------------ACAGGAG-CAGCA
droSec2 scaffold_2:2891270-2891470 - GGCC-GCCA--CCG---------------------------------------------------------------------------------G---------CAACACCAACGGCAACAGCAGCAA---CAA------CG------------GCAACAA---CA-------------------------------GCAACG-------------------C------CGACGGCAGC----------------------------------------------AATACCACGGTTCCAGCGCC---------------------------------------------------------TTTG----GGCAGCAGCAGCAACA------------------------------------------GCAGCAGCAACC---------------------------------------ATGCT-------------AATGCTGC---------AAGTG------------------GAGGCAACAG------------------------------------------------------------------------TGGCCAGCGGCACGG----------------------------------------------------------------------------------------CGATGCCAATGCCAATGCCATTTCCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCT---------------------------------------------------------------------------C-CTCCGC
droYak3 X:6616096-6616344 + ACACCA---AA--GACAACAATGGCCAAGATCGGCGTGACAACAGCGGCA------GGAACCACTGTTGCCGAGGCAGGAAAA------------------------------------------------------------------------ACA---ATATCA---CCCAAGGGGCTCAAGCAATCTGGCAACG-----------------CCGTAGCCATG------ACAACAG--------------------------------------------------------------------------------------------------------------------------------------------------CA------------------------------------------ACACCAACAATC-----------------------------------------------------------------------------------------------------------------------------------AC-----ACCAACAACAGCAACAGGCAAATCAAAATTGAACGAAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCCAAAAATAAATAGCGGGCAGCCGGCCAAG--------T----C-----------------------------ACCTGAACAACAACA-----------------------------------G------------------------GCAACGG-CAGCC
droEre2 scaffold_4784:2897661-2897899 - GGCC-GCCA--CCG---------------------------------------------------------------------------------G---------CAACACCAACGGCAACAGCAGCAACAGCTGCAGCAACA---------ACGGCAACAG---CA-------------------------------GCAACG-------------------C------CGACGGCAGC----------------------------------------------AATACCACGGTTCCAGCGCC---------------------------------------------------------TCTG----GGCAGCAGCA---ACA------------------------------------------GCAGCAGCAACC---------------------------------------ATGCT-------------AATGCTGC---------AAGTG------------------GTGGCAACAA------------------------------------------------------------------------TGGCCAGCGGCACGG----------------------------------------------------------------------------------------CGATGCCAATGCCAATGCCATTTCCGCCGCCTCCGCCGCAGTAGGAAATCCGGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------A------------------------CCAGCAG-CC-GA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GCAC-GACA--GCA---------------------------------------------------------------------------------A---------CATCGCTCACAGCAACAGCAGCAG-------------------------------------------------------------------------AGATCGAACAACAAATTAACAACAACAACA------------------------------ACAGCA------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------CAACAATGGGCCTGGGCCTTGGCAGCGGT-----GT--------------------------------------GGGCGTGG------------CAATCATCAACAACAAATGCTAATGCCAA-----ATGAATTGCTGCTGCAGGCAA--------------------------------------------------------------------------GTCAATTAACAGCCGCC--GACTGC---------------------------------------------------------------AATC-ACAATTTAAGATATGTGCCGCCCCT-------------------------------------------------------------------------------------------------------------GCCCACTGCCCCG-C----C---------------------CCCC--------------ATACA-----------------------------------G------------------------GCAGCGG-CCGGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----ATGAATTGCTGCTGCAGGCAA--------------------------------------------------------------------------GT..........................................................................................................................................................................................................................................................................................................................................................................2411.001001000
................................................................................................................................................................................................................................CAACAACA------------------------------ACAGCA------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------CAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.071100000
............................................................................................................................................................................................................................ACAACAACAACA------------------------------ACAGCA------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
droVir3
GTGGCC---CCA--AAGCCG------------------------------C-GACA------------------------------------GCAG---------CAGCAGCAACGTCAG------------CAGCAGCAG------------------CA------ACA----------------------------GCAACGGCTGAGCAACAAATTAGCAACA------------------------------ACAACAACAGCC------------------------------ACG-----------------------------------------------------------------------------------------------------------------------------------------G------------CAACAATGGGCTTGGGCATGGGCG-----------G--------------------------------------GGGCGTGG------------CGATCATCAACAACAAATGCTAATGCCAA-----ATGAATTGCTGCTGCAGGCAA--------------------------------------------------------------------------GTCAATTAGCTGCCGCC--GACTGC---------------------------------------------------------------AATC-AGAATTTAAGATATGTACCGCCCAT-------------------------------------------------------------------------------------------------------------GCCAAGTGCCACG-C----C---TA-------TG-------------------------ACACA-----------------------------------A------------------------CCCCTGG-CTGGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATTGCTGCTGCAGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CGTCAG------------CAGCAGCAG------------------CA------ACA----------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.171001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................GTCAG------------CAGCAGCAG------------------CA------ACA----------------------------GC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.141000000000000000000000000000001000000000000000000000000000000000
droGri2
GCAGCT---CCA--AAGCCA------------------------------C-GACA---------------------------------------G---------------CAACAACATCGTCAGCAG---CAG------CA------------GCAACAA---CA-------------------------------GCAGCG------CAACAAATTGGCAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAACAATC------------------GGCCTGGGCATGGGAG-----------T--------------------------------------GGGCGTGGGGGGTGGGGCAACAATCATCAACAACAAATGCTAATGCCAA-----ACGAATTGCTGCTGCAGGCAA--------------------------------------------------------------------------GTCAATTAACTGCTGCC--GACTGT---------------------------------------------------------------AATC-AGAATTTAAGATATGTGCCGCCAAT-------------------------------------------------------------------------------------------------------------GCCAAGTGCCACG-T----C----------GCTG-----C------------AAC-----------AGCAGCAACA-----------------------A------------------------TTGTTGG-ACGGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------GGGCGTGGGGGGTGGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------GGGCGTGGGGGGTGGGGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------T--------------------------------------GGGCGTGGGGGGTGGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
.....................................................................................................................................AG------CA------------GCAACAA---CA-------------------------------GCAGCG------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19170.06110
droWil2
ACAC-AACA--ACA---------------------------------------------------------------------------------G---------CAACAATACCAGCAGCAGCAGCAG---CA----------------------------------------------------------------G-----------CAACAAATTAGCGATG------ACAACAG------------------------GAACA------------------------------ACA-----------------------------------------------------------------------------------------------------------------------------------------A------------CAACAAT-------------------------------------------------------------------------GG------------CTATCATCAACAACAAATGCTAATGCCAA-----ACGAATTGCTGCTGCAGGCAA--------------------------------------------------------------------------CACAATTAGCTTCCACCTCGAATAC---------------------------------------------------------------AGTTGGAAATTTAAGATATGTGCCGCCCATAGTACCGCCTAATGCTGCCCACTTGCATTCACACCCACATCCATTGG-----------------------------------------------------------------------------------------------------C------------AAC-----------AGCAGCAACA------------------------------------------------GCAGCAG-ATGGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................CAACAATACCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100010
.................................................................................................................CCAGCAGCAGCAGCAG---CA----------------------------------------------------------------G-----------CAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100001
..........................................................................................................................................................................................................................................AACAG------------------------GAACA------------------------------ACA-----------------------------------------------------------------------------------------------------------------------------------------A------------CAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
..................................................................................................................CAGCAGCAGCAGCAG---CA----------------------------------------------------------------G-----------CAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
dp5
CGGC-AGCA--ACG------------------------------------------GCA--C---------------------------------------------ACAGCAGCAGGGCCAA--GAAG---TA---------------------A------------------------------------------------------CTACCTATTAACAA------------------------------------------------TCCACAAGTACACCAATCACCAATCACCAATG--------------------AA--C-----------------------------------------AACCAACAACAACA---------------------------------------------ACAGCTACAG------------A------------------------------------------A---A---CAAACACCCAAAGAAAGACATTTG-------------------------------------------------------------------------------------------------AC-----------------------------------------------AATCTTCTTGT------------ACTATCCCCCAAATGTAT--------------GC--------------------------------------------------------CAAT------------------------------------------C-----------------------------------------GATTCTG------TATCTCTGTC---------------ACT-C----T---------------------ACCCGTTCA--------------------------------------------------------------------------GCAGGT-GTCGGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTTG-------------------------------------------------------------------------------------------------AC-----------------------------------------------AATCTTCTTGT------------ACT....................................................................................................................................................................................................................................................................................................................................................2411.0010001000000
droPer2
GCTGCC---CCA--CC-------------------------------------------------------------------------------A---------AATCTGCGACAGTTGAATCAGCAG---CAA------CA------------GCA---ACGTCA-------------------------------GCAGCACGCCAGCAGCAAATTGGCAACA-------------------------------------------------------------GCA-------------------------------------------------------------------------------------------------ACACGGGCTTT---------------------------------------AGCC------ACATCAAGATCGGGAATGGC-------GCCA--GTG---------------CCAG----TGCCAGTGCCAGTGCAAGTGCCAGTGG------------AGAACATCAAGCACAATTGCTAATGCCCA-----ATGAATTGCTGCTGCAGGCAT--------------------------------------------------------------------------CCCGATTAGGTTCTTTC--GCCACC---------------------------------------------------------------GTCG-ACAATTTGAGATATGTACCGCCGCTGACTCCGGTCAAT-----------------------------------------------------------------------------------------------------GGTCCAC--------------------TGCGACGGCCCC-------------------T-----------------------------------G------------------------GCGGAT-GGCGGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................CAA------CA------------GCA---ACGTCA-------------------------------GCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501010000
droAna3
ACACCA---GC--AGCA------------------------------------------------------------------------------A---------CAACAGCAACTCCAACACCAGCAG---CAA------CA------------CCAACAA---CACTA----------------------------TCAACA-----------TGCCAT--CCA---ACAACAGCAGC---------------------AAC------------------------------------------AGGCTA----------GCAAAA-TCTCATATCGTGGAATTTTTACCACCACAGGCAACGCG--------------------ATGAATGCAGCAGCCGCAGCCGCAGCGG-CGCAACAGCAGCAGCAACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCTTCCCTCCCCGCAGCTG--------------------------------------------------AGCGT--------------------TC----------------------------------TGC-------------------------------------------------------------------------------------CCGGCCAAATGTCG----CCGCC-----------------------------------------------CTC--------------GAACA-----------------------------------GTCT---------------GG----GCAACAG-CTGGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--------------------TC----------------------------------TGC-------------------------------------------------------------------------------------CCGGCCAAATGTCG----CC.................................................................................................................................................2311.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGTCG----CCGCC-----------------------------------------------CTC--------------GAAC..........................................................................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCT............................................................................................................................................................................................................................................................................................................................................................................................2320.501010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGC................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
droBip1
GCAACA---AC--AACA------------------------------------------------------------------------------G---------CAG---CTGCAGCAACAACAGCAG---TTG------CA---------ACAACA---ACAGCAGCA----------------------------GCAACA-------------------A------CA------A---------C------------A--------------------------------------------------------------------------------------------------------------------GCAGTTACA------------------------------------------GCAACAACAACCGATCATGCAA------C---------------------------AAGATCCCC-----------------------------------------------------AGCAGCAACAGCAGTCG-----------------------------------------------------------CC-----------------------------------------------AAG----------GCTGCC--GACCAC---------------------------------------------------------------TCCC-ACAGG--ACGACAAACGCCGCGTAC-------------------------------------------------------------------------------------------------------------CCCGCAGTCCACC-A----C----------GCCG-----CAACCCATCCAGTCG---------------------------------------------------------------------------C-CCCAACSizeHit CountTotal NormTotal
No Reads
droKik1
CAGC-AGCC--ACA------------------------------------------TCTCACGCAGTTGCAGACGCCGCATAATCAAAACTACCAGCAA------CAGCAGCAAGCTCAG------------GC----------------------------------------------------------------------------CCAAAA-GTTGCCACT------GCAACAG------CAACAGCAGCAGCAGCAACAGCA------------------------------AACGCAGCAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACTACCAGCAACAACACAATTACACTACCCAGCAACAGC---------------------------------------------------------------AGTC-AGTCCCTGAGAAACCCGCCTCAGCACAAC---------------------------------------------------------------------------------------------------------AACAAGCCCCAC-------TTCCCACTGCCG--------T--------AAGCGA---------------------------------------------------------------------------T-GCCAGCSizeHit CountTotal NormTotal
No Reads
droFic1
GCAC-AGCA--GCA---------------------------------------------------------------------------------A---------CAGCAGCAACAGCAACAACAGCAG---CAA------CA------------ACAGCAACATC----------------------------------AGCA-------------------G------CAACAGCAGC---------------------AAC------------------------------------------AGGTGCGCCTGCTCACGCAAAAGACACA-----------------AACTGTACTCATTCCA----TTCAACAACA---ACA------------------------------------------ACAACAACAATC---------------------------------------ACATA---------A---ACAA----CGCTCCTGCCAAGACAACAG-------------------------------------------------------------------------------------------------CC-----------------------------------------------AAGAAATCCAG------------TCTGTCCGCCGGGAACAC--------------AA--------------------CCAC------------------------------------------------------------------------------C-----------------------------------------ACGACCA------TATTGCAGGC------------------------------------------------------AGCCA---------------------------------------------------------------------------A-GCCGGCSizeHit CountTotal NormTotal
No Reads
droEle1
GCCC-AACA--GCA---------------------------------------------------------------------------------G---------CAACAGCAACAGCAGCAGCAGCAA---CAA------CAGCAGCAACAGCAACA---ACAGCA---GGCAATGGCTGTGGGCGGCTCGGCGG---------------------------------------------------------------------------GCGGACAAGTGCAACAGCA-------------------------------------------------------------------------------------------------ACAAGTGCAGCAGGTGCAGCAGCAGCAAGTCCAGCAGCAGCAGCAGCAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTACAA-------------------------------------------------------------------CATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAAATCATA--G---------------------------------ACGCCTCGGGCAACATAACA--------------------------------A------------------CG----GCAACGA-CGAGCSizeHit CountTotal NormTotal
No Reads
droRho1
GCCA-CCCA--CCA---------------------------------------------------------------------------------GCAACATCAGCATT-TGAGCAGCAACAA---------CAA------CA------------ACA---A---CGGCA----------------------------GCAACA-------------------C------AC------A---------C------AGCCAA--CAG--AATACGCACAACAACAACAACAACACATTGCCAGTG--------------------GG--G-----------------------------------------GCACAACAGCAACA---------------------------------------------GCAGCAGCATC------------------------------------------------------AACATC-------------------------------------------AACAG------------------------------------------------------------------------CAGCGTGCAACATTG----------------------------------------------------------------------------------------CAACAT--------------------CCGC------------------------------------------------------------------------------C-----------------------------------------GCTGCCAAATAGCA-----------------------------------------------------------------------------------------------------------------A------------------CATCAAGCAGGC-TTC-GGSizeHit CountTotal NormTotal
No Reads
droBia1
GCGC-AGCA--GCA---------------------------------------------------------------------------------G---------CATCTGCAGCAGCATCAGCAGCAGCAGCAGCATCAG------------------------CAGCA----------------------------GCAACA-------------------T------CT------G---------CAGCAGCAGCAGCAGCAGCC------------------------------CCAGCAGCAA-----------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------TGTTACGTC-----------------------------------------------------AGCAGCAACGGCAACTGCCCACGCAGG-----------------------------------------------------------------------------------CTGCCTACCAG-----------------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAGCAACATC-AGGAGCAACAGCAACAACAGCAACAGCAACTGAGGCAAT-----------------------------CGTTTGCCCACA-ATGCCTTCCCACTGC-G-----------------CAGCGG---------------------------------------------------------------------------C-AACAGCSizeHit CountTotal NormTotal
No Reads
droTak1
CCTC-GGC--TG--GCAATC------------------------------AGGCTA---------------------------------------ACAA------CAATAACAATAGCAG------------CACCAACAACA------------ACAATAA---TA-------------------------------GCAACA-------------------A------CA---------------------ACAACAAT-------------------------AACAACGAGGAGCAAGTT--------------------A----------------------------------------------AGCAACACCAACA---------------------------------------------GCAGCAACAGC------------------------------------------------------AACAACAGCAGG---------CATCC------------------------------------------------------------------------------------------------------------AGCATAGCGGCCGCTGCAGCAGC--------------------------------------------------CGCCATGTACATGGATCCGATGCGCTACCAACATCCGCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCCGCATCCG--------C---------ATCCG---------------------------------------------------------------------------C-ACCAGCSizeHit CountTotal NormTotal
No Reads
droEug1
GCAGCA---GC--AACA------------------------------------------------------------------------------A---------CAT---CAGCAGCAGCAGCAGCAG---CAG------CA------------ACAACAACATC----------------------------------AACA-------------------C------CAGCAGCAGCAACAC---C------AGCAAT------------------------------CACAGTCCCAACAG-----------------------------------------------------------------------CAGCA---A------------------------------TC------------CCAGCAGCAA--------------------------------------------------------------------------------------------------------------------CTTC--ATGCTTTAGCCCAGCAACATATGTTGCAACTGCAGCC------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACCATC---AGC-----------AGCAGCAACACAATGCCACAAGTGAATGATACAGTCAGTACCTGGGCTGGAACT----ATGGCGC-CTGGCSizeHit CountTotal NormTotal
No Reads
dm3
GCTGCG---GCA--GCTGCC------------------------------G-TCCA------------------------------------TCAGCAA------CAGCAGCAGGTGCAG------------CAGCAGCAG------------------CA------ACA----------------------------GCAACA-------------------C------CA------T---------CAGCAGCAACAGCAACAGCA------------------------------CCAGCAGCAGGTTG--CTGCCGTTGCGATG---------------------GCGGCCATGGCCAATTTGTTGCCGCAGCAGCAGTT---------------------------------------------GCTGCTGCATC------------------------------------------------------AGCAGAATCTGC---------TATCG------------------AATGCGGCGG------------------------------------------------------------------------TGGCC------------------ACAACGGTAACGG-------------------------------------------------------------------CGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAAGTTCCA--T---------------------------------TCACTGGTCGCAATACA-----------------------------------A------------------------ACAGGAG-CAGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................CCAGCAGCAGGTTG--CTGCCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................CA----------------------------GCAACA-------------------C------CA------T---------CAGCAGCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2431.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAATCTGC---------TATCG------------------AATGCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................................................CA----------------------------GCAACA-------------------C------CA------T---------CAGCAGCAACAGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................AGCAGCAGGTGCAG------------CAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.6030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................GCAGCAGGTGCAG------------CAGCAGCAG------------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TCAGCAA------CAGCAGCAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................GTTG--CTGCCGTTGCGATG---------------------GCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................GCAACA-------------------C------CA------T---------CAGCAGCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................A----------------------------GCAACA-------------------C------CA------T---------CAGCAGCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................GCAACA-------------------C------CA------T---------CAGCAGCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................AGGTGCAG------------CAGCAGCAG------------------CA------ACA----------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................C------CA------T---------CAGCAGCAACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................GGTGCAG------------CAGCAGCAG------------------CA------ACA----------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................GCAGCAACAGCAACAGCA------------------------------CT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.2440000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................G------------CAGCAGCAG------------------CA------ACA----------------------------GCAACA-------------------C------CA------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................AG------------CAGCAGCAG------------------CA------ACA----------------------------GCAACA-------------------C------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................CAGGTGCAG------------CAGCAGCAG------------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CAG------------CAGCAGCAG------------------CA------ACA----------------------------GCAACA-------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................GCAGCAG------------------CA------ACA----------------------------GCAACA-------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................GCAG------------CAGCAGCAG------------------CA------ACA----------------------------GCAACA-------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................CA------T---------CAGCAGCAACAGCAACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................GCAGCAG------------------CA------ACA----------------------------GCAACA-------------------C------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................CAGCAACAGCAACAGCA------------------------------CT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................CAGCAGCAG------------------CA------ACA----------------------------GCAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................CAGCAGCAACAGCAACAGCA------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................GCAG------------CAGCAGCAG------------------CA------ACA----------------------------GCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................AG------------CAGCAGCAG------------------CA------ACA----------------------------GCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................G------------CAGCAGCAG------------------CA------ACA----------------------------GCAACA-------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCTGCG---GCA--GCCGCC------------------------------G-TCCA------------------------------------TCAG---------CAACAGCAGCAGGTG------------CAGCAGCAG------------------CA------ACA----------------------------GCAACA-------------------C------CA------T---------CAGCAGCAACAGCAGCAGCA------------------------------CCAGCAGCAGGTTG--CTGCCGTTGCGATG---------------------GCGGCCATGGCCAATTTGTTGCCGCAGCAGCAGTT---------------------------------------------GCTGCTGCATC------------------------------------------------------AGCAGAATCTGC---------TATCG------------------AATGCGGCGG------------------------------------------------------------------------TGGCC------------------ACAACGGTAACGG-------------------------------------------------------------------CGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCGGGTTCCA--T---------------------------------TCACTGGTCGCAATACA-----------------------------------A------------------------ACAGGAG-CAGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................G------------CAGCAGCAG------------------CA------ACA----------------------------GCAACA-------------------C------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2271.14800000800000000000
..................................................G-TCCA------------------------------------TCAG---------CAACAGCAGCAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
........................................................................................................................................................................................................................................................CAGCAGCAACAGCAGCAGCA------------------------------CC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.9110000001000000000000
.........................................................................................................................................................................................................................................................AGCAGCAACAGCAGCAGCA------------------------------CCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.17100000000000100000
..............................................................................................................................................................................................................................................................CAACAGCAGCAGCA------------------------------CCAGCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.14100000000000100000
................................................................................................................................................................................................................................................................ACAGCAGCAGCA------------------------------CCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.10200000000002000000
..................................................................................................................................................................................................................................................................AGCAGCAGCA------------------------------CCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
..............................................................................................................................................................................................................................................T---------CAGCAGCAACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
droSec2
GGCC-GCCA--CCG---------------------------------------------------------------------------------G---------CAACACCAACGGCAACAGCAGCAA---CAA------CG------------GCAACAA---CA-------------------------------GCAACG-------------------C------CGACGGCAGC----------------------------------------------AATACCACGGTTCCAGCGCC---------------------------------------------------------TTTG----GGCAGCAGCAGCAACA------------------------------------------GCAGCAGCAACC---------------------------------------ATGCT-------------AATGCTGC---------AAGTG------------------GAGGCAACAG------------------------------------------------------------------------TGGCCAGCGGCACGG----------------------------------------------------------------------------------------CGATGCCAATGCCAATGCCATTTCCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCT---------------------------------------------------------------------------C-CTCCGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................CG------------GCAACAA---CA-------------------------------GCAACG-------------------C------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...................................................................................................................................................................................................................................................................................................CACGGTTCCAGCGCC---------------------------------------------------------TTTG----GGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
............................................................................................................................................................................................................................................................................................................................................................................TTG----GGCAGCAGCAGCAACA------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..........................................................................................................AACACCAACGGCAACAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...............................................................................................................CAACGGCAACAGCAGCAA---CA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.1410010
droYak3
ACACCA---AA--GACAACAATGGCCAAGATCGGCGTGACAACAGCGGCA------GGAACCACTGTTGCCGAGGCAGGAAAA------------------------------------------------------------------------ACA---ATATCA---CCCAAGGGGCTCAAGCAATCTGGCAACG-----------------CCGTAGCCATG------ACAACAG--------------------------------------------------------------------------------------------------------------------------------------------------CA------------------------------------------ACACCAACAATC-----------------------------------------------------------------------------------------------------------------------------------AC-----ACCAACAACAGCAACAGGCAAATCAAAATTGAACGAAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCCAAAAATAAATAGCGGGCAGCCGGCCAAG--------T----C-----------------------------ACCTGAACAACAACA-----------------------------------G------------------------GCAACGG-CAGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGGCAAATCAAAATTGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGGGCAGCCGGCCAAG--------T----C-----------------------------ACC.....................................................................................2411.00101000000000
..........A--GACAACAATGGCCAAGATCGGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.................................................................................................................................................................ATATCA---CCCAAGGGGCTCAAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAACAGGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50100010000000
droEre2
GGCC-GCCA--CCG---------------------------------------------------------------------------------G---------CAACACCAACGGCAACAGCAGCAACAGCTGCAGCAACA---------ACGGCAACAG---CA-------------------------------GCAACG-------------------C------CGACGGCAGC----------------------------------------------AATACCACGGTTCCAGCGCC---------------------------------------------------------TCTG----GGCAGCAGCA---ACA------------------------------------------GCAGCAGCAACC---------------------------------------ATGCT-------------AATGCTGC---------AAGTG------------------GTGGCAACAA------------------------------------------------------------------------TGGCCAGCGGCACGG----------------------------------------------------------------------------------------CGATGCCAATGCCAATGCCATTTCCGCCGCCTCCGCCGCAGTAGGAAATCCGGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------A------------------------CCAGCAG-CC-GASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT-------------AATGCTGC---------AAGTG------------------GT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000

Generated: 05/18/2015 at 02:43 AM