dmo_2448

CDS [Dmoj\GI12000-cds]; CDS [Dmoj\GI12000-cds]; exon [dmoj_GLEANR_12049:3]; exon [dmoj_GLEANR_12049:2]; intron [Dmoj\GI12000-in]

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ACTTTTTCATTGGCGACGAGGCGTTCGATGCCACGGGCTACTCCATTAAAGTGAGTAAGCAGCATTAACTATGCAGGGCCTATGCGCACGCATTTGCGACGATATCGCAGCTCGTGAATGACTTCGTGATATGACAACAGCTGATAAAAGACTGTTTATCAAAAATGTTGAAACCTAAAATAATGTTTTGTGGTCTTGTGCCTTTGCAGTATCCTGTGCGTCATGGCCTGGTGGAGGATTGGGATCTTATGGAGCGCTT ************************************************.....................((((((((..((((....))))((((((.....)))))).(((((.(((....)))..)))))(((((..(((((((......)))))))....)))))..(((((((((...)))))).))).....))).))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body	V056 head
...........................ATGCCACGGGCTACTCCAT.....................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0
......TCATTGGCGACGAGGCGTT..........................................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0
......................................................................ATGCAGGGCCTATGCGCACGC........................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................................AGGATTGGGATCTTATGGAGCGCT.	24	0	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................TCATGGCCTGGTGGAGGA.....................	18	0	1	1.00	1	1	0	0	0
......................GTTCGATGCCACGGGCTACTCC.......................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0
...................................................................................................................................................................................................................................CTGGTGGAGGATTGGGATCTTATGGA......	26	0	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................GTCATGGCCTGGTGGAGG......................	18	0	1	1.00	1	1	0	0	0
..................................................................AACGATACAGGGCCTATTCG.............................................................................................................................................................................	20	3	2	0.50	1	1	0	0	0
............................................................................................................................CGTAATATGACAACGTCTGAT..................................................................................................................	21	3	2	0.50	1	1	0	0	0
...................................................................................................................................TGACAAAAGCTGATAAAAAAC...........................................................................................................	21	2	2	0.50	1	0	1	0	0
..........................................................................................................................................................................................................................................AGGATTAGGAACTTATGGCG.....	20	3	2	0.50	1	0	0	1	0
.................................................................................................................................................AAGCGACTGTTTATCAAAAA..............................................................................................	20	2	3	0.33	1	1	0	0	0
...............................................................................................................................................................CGCAATTGTTGAAACCTAAAAT..............................................................................	22	3	4	0.25	1	1	0	0	0
..................................................................................................................................................TAAGACTGTTTGTCAAAGATG............................................................................................	21	3	5	0.20	1	0	0	0	1
.................................................................................................................................................................CAATTGTTGAAACCTAAAATC.............................................................................	21	3	10	0.20	2	2	0	0	0
.........................................................................................................................................................................................................................GCGTCCTGCCCTGGTGGAGT......................	20	3	5	0.20	1	1	0	0	0
..................................................................................................................................................AGCGACTGTTTATCAAAAA..............................................................................................	19	2	7	0.14	1	1	0	0	0
................................................................................................................................................................GCAATTGTTGAAACCTAAAAT..............................................................................	21	3	15	0.13	2	2	0	0	0
.................................................................TAACGATACAGGGCCCAT................................................................................................................................................................................	18	3	20	0.10	2	1	1	0	0
.............................................................................................................................................................................CCTAAAATTGTGTGTTGTGG..................................................................	20	3	10	0.10	1	1	0	0	0
........................................................................................................................................................................................................CCTTTGCTGTCTCCGGTGCG.......................................	20	3	11	0.09	1	1	0	0	0
.................................................................................................................................................................CAATTGTTGAAACCTAAA................................................................................	18	2	17	0.06	1	1	0	0	0

TGAAAAAGTAACCGCTGCTCCGCAAGCTACGGTGCCCGATGAGGTAATTTCACTCATTCGTCGTAATTGATACGTCCCGGATACGCGTGCGTAAACGCTGCTATAGCGTCGAGCACTTACTGAAGCACTATACTGTTGTCGACTATTTTCTGACAAATAGTTTTTACAACTTTGGATTTTATTACAAAACACCAGAACACGGAAACGTCATAGGACACGCAGTACCGGACCACCTCCTAACCCTAGAATACCTCGCGAA ************************************************.....................((((((((..((((....))))((((((.....)))))).(((((.(((....)))..)))))(((((..(((((((......)))))))....)))))..(((((((((...)))))).))).....))).))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body	V049 head	V056 head
...................................................................................................................................................................TAACAACTTTGGATTTTAG.............................................................................	19	2	6	2.17	13	13	0	0	0	0
..................................................................................................................................................................TTAACAACTTTGGATTTTAG.............................................................................	20	2	5	1.20	6	6	0	0	0	0
................................TGCCCGATGAGGTAATTTCA...............................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0
................................................................................................................................................................CGTTAACAACTTTGGATTTTA..............................................................................	21	3	15	0.60	9	9	0	0	0	0
...................................................................................................................................................................TAACAACTTTGGATTTTA..............................................................................	18	1	2	0.50	1	1	0	0	0	0
...............................................................................................................................................................GCGTTAACAACTTTGGATTTTA..............................................................................	22	3	4	0.50	2	2	0	0	0	0
.................................................................................................................................................................GTTAACAACTTTGGATTTTA..............................................................................	20	2	3	0.33	1	1	0	0	0	0
..............................................................................................................................................................AGCGTTAACAACTTTGGATTT................................................................................	21	3	6	0.17	1	0	0	1	0	0
..........................................................CGTCGTAATCGCTACGGCCC.....................................................................................................................................................................................	20	3	7	0.14	1	0	0	0	0	1
.........................................................CCGTCGTAATCGATACGCCCC.....................................................................................................................................................................................	21	3	7	0.14	1	0	0	0	1	0
.............................................................................................................................................................TCGCTTTAACAACTTTGGATT.................................................................................	21	3	8	0.13	1	1	0	0	0	0
.................................................................................................................................................................GTTAACAACTTTGGATTTTAG.............................................................................	21	3	10	0.10	1	1	0	0	0	0
.............................................................................................................................................................TAGCGTTAACAACTTTGGAT..................................................................................	20	3	15	0.07	1	0	0	1	0	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6680:11404987-11405245 -	dmo_2448	ACTTTTTCATTGGCGACGAGGCGTTCGATGCCACGGGCTACTCCATTAAAGTGAGTAAGCAGCATTAACTATGCAGGGCCTAT----------------------------------------------------------------GCGCACGCATTTGCGACGATATCGCAGCTCGTGAATGACTTCGTGATATGACAACAGCTGATAAAAGA----CTGTTTATCAAAAATGTTGAAACCTAAAA------------------------------------T-AATG----TTT-TGTGGTC-TTGTGC---CTTT---GCAGTATCCTGTGCGTCATGGCCTGGTGGAGGATTGGGATCTTATGGAGCGCTT
droVir3	scaffold_13049:9352558-9352828 +		ACTTTTTTATTGGCGACGAGGCGTTCGACGCCACGGGCTACTCCATTAAAGTAAGAAAGCAGTATTATCTTTACCGATCCTA---------------------------------------------------------------------------------CCGTATCGAAATTTGTAAAT-TCGTCGCAATATGAAAACAGCTGATATGAAGTGATATGTGGGCCAAAAGTGTTTAAACATAAAGATTCAAACATTATTGTTGACTTATTTACTTAAGTGTTAAACCTTTG-----------------T---GTTT---ATAGTATCCTGTGCGTCATGGCCTGGTCGAAGACTGGGATCTCATGGAGCGCTT
droGri2	scaffold_15110:6808579-6808792 -		ACTTTTTTATTGGGGACGAGGCATTCGATGCCACGGGCTACTCCATTAAAGTGAGTAAT---------TT--ATCA------A-TAT-----ACA---TGATGATAAGA-AAACATATGATTTATGCCTCGACG-CTAAAGCA--------------------------------------------------------------------------------------------------CATAAAGATTTAGCCATTATT----------------------TAAATGTTTGCTGC--------TTGGCT---TTTA---ACAGTATCCTGTGCGTCATGGCCTGGTCGAGGATTGGGATCTGATGGAGCGTTT
droWil2	scf2_1100000004540:77010-77187 -		ATTTCTTCATTGGTGACGAAGCCTTCGATGCCACTGGCTATTCGATTAAGGTAAGGTAT---------TT----------------------TTTG----------ACTCAA-AA-------------TAGTAA-TCTTCAT---GTGAGTGCT-------AAT-------------------------------------------------------------------------------------------T----------------------------------TCTGTTT-TGTTTTT-TTGTAT---TCTA--TGAAGTATCCCGTACGTCATGGCCTTGTGGAGGATTGGGACTTGATGGAACGCTT
dp5	XR_group3a:1135786-1135945 -		ACTTTTTCATTGGCGATGAAGCCTTCGATGCCACTGGCTACTCCATTAAAGTATGTCGC-----------------------CACACTGATA---AG--CTTAT----------------------------CGACAT---T---CCT------------TAAT-------------------------------------------------------------------------------------------T----------------------------------TTTATCA---------T--CAC---CTCT---GCAGTACCCGGTGCGTCATGGTCTGGTGGAGGACTGGGACTTAATGGAGCGCTT
droPer2	scaffold_23:1162682-1162841 -		ACTTTTTCATTGGCGATGAAGCCTTCGATGCCACTGGCTACTCCATTAAAGTATGTCGC-----------------------CACACTGATA---AG--CTTAT----------------------------CGACAT---T---CCT------------TAAT-------------------------------------------------------------------------------------------T----------------------------------TTTATCA---------T--CAC---CTCT---GCAGTACCCGGTGCGTCATGGTCTGGTGGAGGACTGGGACTTAATGGAGCGCTT
droAna3	scaffold_13337:13539081-13539251 +		ACTTCTTTATCGGCGACGAGGCCTTCGATGCCACCGGATACTCCATAAAGGTGTTGTCC---------------------------------------------------AG-C------------------CA-CTTCAGCTCACTCCCCGCCCAGTTATGAC-------------------------------------------------------------------------------------------T----------------------------------TTTATCTT------TTTTTCAT---TCTCGGTTCAGTACCCGGTGCGTCATGGCCTGGTCGAAGATTGGGATCTGATGGAACGATT
droBip1	scf7180000396589:513195-513357 -		ACTTCTTTATCGGCGACGAGGCCTTCGATGCCACCGGATACTCCATAAAGGTATTGTA--------------------------------------------------C-AG-C------------------CA-CTTCAGC---TTTCCCACCCATTTCTGAC-------------------------------------------------------------------------------------------G----------------------------------TTTATCTT--------TCTCAT---TTTC---GTAGTACCCGGTGCGTCATGGTCTGGTTGAAGATTGGGATCTGATGGAACGCTT
droKik1	scf7180000302274:457867-458030 -		ACTTTTTCATCGGCGACGAGGCCTTCGATGCCACCGGCTACTCAATCAAGGTAAGGCCC----------------------CCG---------------CTCATCAATC-AG-C------------------CA-CTTGAGT---TTT------------TGTT-------------------------------------------------------------------------------------------T----------------------------------GTAATCA---------T--CACTTTTCCC---GCAGTATCCGGTGCGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGCTT
droFic1	scf7180000454065:429857-430019 -		ACTTCTTCATCGGAGATGAGGCCTTTGATGCCACCGGTTACTCCATCAAGGTAAGCAAT---------CT------------T-TAC-----CGA---TGATTATAAGCCGA-C------------------AC-CAT-----------------------CAC-------------------------------------------------------------------------------------------C----------------------------------TTTATCT---------GGAAAT---TCCT---TCAGTATCCGGTGCGTCATGGTCTTGTGGAGGACTGGGACTTGATGGAGCGCTT
droEle1	scf7180000490993:1771388-1771549 +		ACTTCTTCATTGGGGATGAGGCCTTCGATGCCACCGGTTACTCCATCAAGGTTTGCTCT-----------------------TGATC--------CG--TCAATCAACC-AA-C--------------CAGCCA-CTT-----------------------CAT-------------------------------------------------------------------------------------------C----------------------------------TTTGTCT---------A--CTT--TTTCT---TCAGTATCCGGTGCGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGCTT
droRho1	scf7180000757809:18392-18446 +		ACTTCTTCATTGGGGATGAGGCCTTTGATGCCACCGGCTACTCCATCAAAGTAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302428:1144294-1144346 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTATCCGGTGCGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGTTT
droTak1	scf7180000415862:177400-177564 -		ACTTCTTCATCGGCGACGAGGCCTTCGATGCCACCGGCTACTCCATTAAGGTGAGCTTT-----------------------TAAAA-----ACAGCCTGATAATAGGA-GA-C------------------CA-CTT-----------------------CAC-------------------------------------------------------------------------------------------C----------------------------------ATTATCT---------TCGCAT---TCCC--TCTAGTATCCGGTGCGACATGGTCTGGTGGAGGATTGGGACTTGATGGAGCGCTT
droEug1	scf7180000409524:533477-533638 +		ACTTCTTCATCGGCGATGAGGCCTTCGATGCCACCGGTTACTCCATCAAGGTTCGCTTC-----------------------TGAAT-----AACC--TGCTATCAAGT-AA-C------------------CA-ATT-----------------------CAG-------------------------------------------------------------------------------------------T----------------------------------TTTATCT---------TTAAAT---TCCT---ATAGTATCCGGTGCGTCATGGTCTGGTGGAGGACTGGGATTTAATGGAGCGATT
dm3	chr3L:8108395-8108557 -		ACTTCTTCATCGGCGATGAGGCCTTCGATGCCACCGGCTACTCCATCAAGGTATGCTCT-----------------------TGTAT-----CTAT--GGTCATTAAGC-AA-C------------------CGACAT-----------------------CAC-------------------------------------------------------------------------------------------A----------------------------------TTTATCA---------TTGCAT---TCCA---ATAGTATCCGGTGCGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGCTT
droSim2	3l:7918201-7918361 -	dsi_17978	ACTTCTTCATCGGCGATGAGGCCTTCGATGCCACCGGCTACTCCATCAAGGTATGCTCT-----------------------TGTAT-----CTAG--GCCCATTAAGC-AA-T------------------CG--AT-----------------------CAC-------------------------------------------------------------------------------------------A----------------------------------TTTATTA---------TGGTAT---TCCA---ATAGTATCCGGTGCGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGCTT
droSec2	scaffold_0:395793-395952 -		ACTTCTTCATCGGCGATGAGGCCTTCGATGCCACCGGCTACTCCATTAAGGTATGCTCT-----------------------TGTAT-----CTAT--GGCCATTAAGC-AA-C------------------CGACA--------------------------T-------------------------------------------------------------------------------------------A----------------------------------TTTATCA---------TGGCAT---TCCA---ATAGTATCCGGTGCGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGCTT
droYak3	3L:8695967-8696127 -		ACTTCTTCATTGGCGATGAGGCCTTTGATGCCACCGGCTACTCCATCAAGGTATGCTCT-----------------------TTTAT-----TTAT--TGTTGATAGGC-AA-C------------------CA-CAT-----------------------CAC-------------------------------------------------------------------------------------------G----------------------------------T-TAACA---------TTGCAT---TCCA---ACAGTACCCGGTGCGTCATGGTTTGGTGGAGGATTGGGATTTGATGGAGCGCTT
droEre2	scaffold_4784:3256421-3256582 +		ACTTCTTTATCGGCGATGAGGCCTTCGATGCCACCGGCTACTCCATCAAGGTATGCTCT-----------------------TGCGT-----CTGT--TGTCATTAAAC-AA-C------------------CG-CAT-----------------------CTC-------------------------------------------------------------------------------------------A----------------------------------TATATGA---------TGACAT---TCCA---ACAGTACCCGGTGCGCCATGGTCTGGTGGAGGACTGGGATTTGATGGAGCGCTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

ACTTTTTCATTGGCGACGAGGCGTTCGATGCCACGGGCTACTCCATTAAAGTGAGTAAGCAGCATTAACTATGCAGGGCCTAT----------------------------------------------------------------GCGCACGCATTTGCGACGATATCGCAGCTCGTGAATGACTTCGTGATATGACAACAGCTGATAAAAGA----CTGTTTATCAAAAATGTTGAAACCTAAAA------------------------------------T-AATG----TTT-TGTGGTC-TTGTGC---CTTT---GCAGTATCCTGTGCGTCATGGCCTGGTGGAGGATTGGGATCTTATGGAGCGCTT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................ATGCCACGGGCTACTCCAT..........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
......TCATTGGCGACGAGGCGTT...............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
......................................................................ATGCAGGGCCTAT----------------------------------------------------------------GCGCACGC.............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................AGGATTGGGATCTTATGGAGCGCT.	24	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................TCATGGCCTGGTGGAGGA.....................	18	1	1.00	1	1	0	0	0	0	0
......................GTTCGATGCCACGGGCTACTCC............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................CTGGTGGAGGATTGGGATCTTATGGA......	26	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GTCATGGCCTGGTGGAGG......................	18	1	1.00	1	1	0	0	0	0	0

droVir3

ACTTTTTTATTGGCGACGAGGCGTTCGACGCCACGGGCTACTCCATTAAAGTAAGAAAGCAGTATTATCTTTACCGATCCTA---------------------------------------------------------------------------------CCGTATCGAAATTTGTAAAT-TCGTCGCAATATGAAAACAGCTGATATGAAGTGATATGTGGGCCAAAAGTGTTTAAACATAAAGATTCAAACATTATTGTTGACTTATTTACTTAAGTGTTAAACCTTTG-----------------T---GTTT---ATAGTATCCTGTGCGTCATGGCCTGGTCGAAGACTGGGATCTCATGGAGCGCTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................CGAAGACTGGGATCTCATGGAGC....	23	1	5.00	5	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TCGAAGACTGGGATCTCATG........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................ATTATCTTTACCGATCCTA---------------------------------------------------------------------------------CCGTATC..............................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GGCGACGAGGCGTTCGACGCCACGGGC..................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TCATGGCCTGGTCGAAGACTGGGAT..............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GGCGACGAGGCGTTCGAC...........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTATTGGCGACGAGGCGTTCGACGCC........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CTGTGCGTCATGGCCTGGT...........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................ATCCTGTGCGTCATGGCCTGGT...........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TCGAAGACTGGGATCTCATGGAGCGC..	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GACGAGGCGTTCGACGCCACGGGC..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GTCATGGCCTGGTCGAAGAC....................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................TATTATCTTTACCGATCCTA---------------------------------------------------------------------------------CCGTAT...............................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

ACTTTTTTATTGGGGACGAGGCATTCGATGCCACGGGCTACTCCATTAAAGTGAGTAAT---------TT--ATCA------A-TAT-----ACA---TGATGATAAGA-AAACATATGATTTATGCCTCGACG-CTAAAGCA--------------------------------------------------------------------------------------------------CATAAAGATTTAGCCATTATT----------------------TAAATGTTTGCTGC--------TTGGCT---TTTA---ACAGTATCCTGTGCGTCATGGCCTGGTCGAGGATTGGGATCTGATGGAGCGTTT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................................................................................................................................................................................................................................................................................................................................................CGAGGATTGGGATCTGATGGA......	21	1	1.00	1	0	1
...................................................................................................................................................................................................................................................................................................................................................ATGGCCTGGTCGAGGATTGGG................	21	1	1.00	1	0	1
............................................................................................................................................................................................................................................................................................................................................GTGCGTCATGGCCTGGTCGAGGATTGG.................	27	1	1.00	1	0	1

droWil2

ATTTCTTCATTGGTGACGAAGCCTTCGATGCCACTGGCTATTCGATTAAGGTAAGGTAT---------TT----------------------TTTG----------ACTCAA-AA-------------TAGTAA-TCTTCAT---GTGAGTGCT-------AAT-------------------------------------------------------------------------------------------T----------------------------------TCTGTTT-TGTTTTT-TTGTAT---TCTA--TGAAGTATCCCGTACGTCATGGCCTTGTGGAGGATTGGGACTTGATGGAACGCTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................................................................................................................................................................TTGTGGAGGATTGGGACTTGAT.........	22	1	3.00	3	0	0	3	0	0
..................................................................................................................................................................................................................................................................................................................................................CATGGCCTTGTGGAGGATTGGGA...............	23	1	2.00	2	0	0	2	0	0
.......................................................................................................................................................................................................................................................................................................................................ATCCCGTACGTCATGGCCTTGTGGA........................	25	1	2.00	2	0	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................................TGGCCTTGTGGAGGATTGGGACTTGA..........	26	1	2.00	2	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................................................GTACGTCATGGCCTTGTGGA........................	20	1	2.00	2	0	0	1	1	0
........ATTGGTGACGAAGCCTTCGATGCC........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................CTTGTGGAGGATTGGGACTTGATGGA......	26	1	1.00	1	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................CCTTGTGGAGGATTGGGACTTGATGG.......	26	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATTGGGACTTGATGGAAC....	18	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTGGGACTTGATGGAACGCT.	20	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................ATCCCGTACGTCATGGCCTTGT...........................	22	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................GGCCTTGTGGAGGATTGG.................	18	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................CGTACGTCATGGCCTTGTGGAGGATT...................	26	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GGCCTTGTGGAGGATTGGGACTT............	23	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................CATGGCCTTGTGGAGGATTGG.................	21	1	1.00	1	0	0	1	0	0
.......CATTGGTGACGAAGCCTTCGAT...........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................GGCCTTGTGGAGGATTGGGACTTGATG........	27	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................CTTGTGGAGGATTGGGACTTGATGG.......	25	1	1.00	1	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................ATTGGGACTTGATGGAACGCT.	21	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................TTGTGGAGGATTGGGACTTGATGGA......	25	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................GGATTGGGACTTGATGGAA.....	19	1	1.00	1	0	0	1	0	0
........ATTGGTGACGAAGCCTTCGAT...........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................GGCCTTGTGGAGGATTGGGA...............	20	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................GGAGGATTGGGACTTGAT.........	18	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................ATCCCGTACGTCATGGCCTTGTGGAGG......................	27	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................GTACGTCATGGCCTTGTGGAG.......................	21	1	1.00	1	0	0	0	1	0
.......CATTGGTGACGAAGCCTTC..............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................CTTGTGGAGGATTGGGACTTGAT.........	23	1	1.00	1	0	0	1	0	0
..............GACGAAGCCTTCGATGCCACTGGC..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ATGGCCTTGTGGAGGATTGGGA...............	22	1	1.00	1	0	0	1	0	0

dp5

ACTTTTTCATTGGCGATGAAGCCTTCGATGCCACTGGCTACTCCATTAAAGTATGTCGC-----------------------CACACTGATA---AG--CTTAT----------------------------CGACAT---T---CCT------------TAAT-------------------------------------------------------------------------------------------T----------------------------------TTTATCA---------T--CAC---CTCT---GCAGTACCCGGTGCGTCATGGTCTGGTGGAGGACTGGGACTTAATGGAGCGCTT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................GTCATGGTCTGGTGGAGG......................	18	1	4.00	4	0	3	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GGTGCGTCATGGTCTGGTGGAGG......................	23	1	4.00	4	0	4	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GTGGAGGACTGGGACTTAATGGAGC....	25	1	3.00	3	0	0	0	0	0	0	0	0	0	3
...............................................................................................................................................................................................................................................................................................................................................CGTCATGGTCTGGTGGAGG......................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................CTGGTGGAGGACTGGGACTTAATGGG......	26	1	2.00	2	0	0	0	0	0	0	0	0	0	2
............................................................................................................................................................................................................................................................................................................................................GTGCGTCATGGTCTGGTGGAGG......................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GTCATGGTCTGGTGGAGGACTGGGA...............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ACTGGGACTTAATGGAGC....	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTCTGGTGGAGGACTGGGACTTAATGG.......	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GGAGGACTGGGACTTAATGGAGC....	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.........................CGATGCCACTGGCTACTCCATT.........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................CTGGTGGAGGACTGGGAC..............	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................T--CAC---CTCT---GCAGTACCCGGTGT........................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CTGGGACTTAATGGAGCGC..	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GGACTGGGACTTAATGGAGC....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GCGTCATGGTCTGGTGGAGGA.....................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GCGTCATGGTCTGGTGGA........................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CATGGTCTGGTGGAGGA.....................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.........TTGGCGATGAAGCCTTCGATG..........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GGAGGACTGGGACTTAAT.........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................GGAGGACTGGGACTTAATGGA......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................GGTCTGGTGGAGGACTGGGACTT............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GTCATGGTCTGGTGGAGGA.....................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................CTGGTGGAGGACTGGGACT.............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CATGGTCTGGTGGAGGACTGG.................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AGGACTGGGACTTAATGGAGCG...	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............GATGAAGCCTTCGATGCCACTG....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ACTGGGACTTAATGGAGCGC..	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GCGTCATGGTCTGGTGGAGG......................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

ACTTTTTCATTGGCGATGAAGCCTTCGATGCCACTGGCTACTCCATTAAAGTATGTCGC-----------------------CACACTGATA---AG--CTTAT----------------------------CGACAT---T---CCT------------TAAT-------------------------------------------------------------------------------------------T----------------------------------TTTATCA---------T--CAC---CTCT---GCAGTACCCGGTGCGTCATGGTCTGGTGGAGGACTGGGACTTAATGGAGCGCTT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................................................................................................................................................GGTGCGTCATGGTCTGGTGGAGG......................	23	1	4.00	4	0	2	0	0	0	2
................................................................................................................................................................................................................................................................................................................................................GTCATGGTCTGGTGGAGG......................	18	1	2.00	2	0	1	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................GTCATGGTCTGGTGGAGGACTGG.................	23	1	2.00	2	0	0	0	0	0	2
..................................................................................................................................................................................................................................................................................................................T--CAC---CTCT---GCAGTACCCGTC..........................................	20	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................GGAGGACTGGGACTTAATGG.......	20	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ACTGGGACTTAATGGAGCGC..	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................CTGGTGGAGGACTGGGACTTAATG........	24	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................CGTCATGGTCTGGTGGAGG......................	19	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................GTCATGGTCTGGTGGAGGACTGGGAC..............	26	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TGGAGGACTGGGACTTAATGGA......	22	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................ACTGGGACTTAATGGAGC....	18	1	1.00	1	0	1	0	0	0	0

droAna3

ACTTCTTTATCGGCGACGAGGCCTTCGATGCCACCGGATACTCCATAAAGGTGTTGTCC---------------------------------------------------AG-C------------------CA-CTTCAGCTCACTCCCCGCCCAGTTATGAC-------------------------------------------------------------------------------------------T----------------------------------TTTATCTT------TTTTTCAT---TCTCGGTTCAGTACCCGGTGCGTCATGGCCTGGTCGAAGATTGGGATCTGATGGAACGATT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................................................................................................................................................................................................................................................................................................GCCTGGTCGAAGATTGGGATCTGATG........	26	1	2.00	2	0	0	0	0	2	0
..............GACGAGGCCTTCGATGCCACCGGA..................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	1	0	0	0	0	1
..................AGGCCTTCGATGCCACCGGATACTCC............................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GTCATGGCCTGGTCGAAGATTGGG................	24	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................AGATTGGGATCTGATGGAAC....	20	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GTCATGGCCTGGTCGAAGA.....................	19	1	1.00	1	1	0	0	0	0	0
..TTCTTTATCGGCGACGAGGC..................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ATGGCCTGGTCGAAGATTGGG................	21	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................GTCATGGCCTGGTCGAAGATTGGGA...............	25	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................GGTCGAAGATTGGGATCTGATG........	22	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................TTGGGATCTGATGGAACGATT	21	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................GTCGAAGATTGGGATCTGATGG.......	22	1	1.00	1	0	0	1	0	0	0
........ATCGGCGACGAGGCCTTCGATGCCACC.....................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CATGGCCTGGTCGAAGATTGG.................	21	1	1.00	1	0	0	0	0	1	0
...............ACGAGGCCTTCGATGCCACCGGAT.................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
......................CTTCGATGCCACCGGATACTC.............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
......................CTTCGATGCCACCGGATACTCC............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GAAGATTGGGATCTGATGGAA.....	21	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................ATTGGGATCTGATGGAACGAT.	21	1	1.00	1	0	0	0	0	1	0

droBip1

ACTTCTTTATCGGCGACGAGGCCTTCGATGCCACCGGATACTCCATAAAGGTATTGTA--------------------------------------------------C-AG-C------------------CA-CTTCAGC---TTTCCCACCCATTTCTGAC-------------------------------------------------------------------------------------------G----------------------------------TTTATCTT--------TCTCAT---TTTC---GTAGTACCCGGTGCGTCATGGTCTGGTTGAAGATTGGGATCTGATGGAACGCTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACTTTTTCATCGGCGACGAGGCCTTCGATGCCACCGGCTACTCAATCAAGGTAAGGCCC----------------------CCG---------------CTCATCAATC-AG-C------------------CA-CTTGAGT---TTT------------TGTT-------------------------------------------------------------------------------------------T----------------------------------GTAATCA---------T--CACTTTTCCC---GCAGTATCCGGTGCGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGCTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACTTCTTCATCGGAGATGAGGCCTTTGATGCCACCGGTTACTCCATCAAGGTAAGCAAT---------CT------------T-TAC-----CGA---TGATTATAAGCCGA-C------------------AC-CAT-----------------------CAC-------------------------------------------------------------------------------------------C----------------------------------TTTATCT---------GGAAAT---TCCT---TCAGTATCCGGTGCGTCATGGTCTTGTGGAGGACTGGGACTTGATGGAGCGCTT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACTTCTTCATTGGGGATGAGGCCTTCGATGCCACCGGTTACTCCATCAAGGTTTGCTCT-----------------------TGATC--------CG--TCAATCAACC-AA-C--------------CAGCCA-CTT-----------------------CAT-------------------------------------------------------------------------------------------C----------------------------------TTTGTCT---------A--CTT--TTTCT---TCAGTATCCGGTGCGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGCTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACTTCTTCATTGGGGATGAGGCCTTTGATGCCACCGGCTACTCCATCAAAGTAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTATCCGGTGCGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGTTT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACTTCTTCATCGGCGACGAGGCCTTCGATGCCACCGGCTACTCCATTAAGGTGAGCTTT-----------------------TAAAA-----ACAGCCTGATAATAGGA-GA-C------------------CA-CTT-----------------------CAC-------------------------------------------------------------------------------------------C----------------------------------ATTATCT---------TCGCAT---TCCC--TCTAGTATCCGGTGCGACATGGTCTGGTGGAGGATTGGGACTTGATGGAGCGCTT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACTTCTTCATCGGCGATGAGGCCTTCGATGCCACCGGTTACTCCATCAAGGTTCGCTTC-----------------------TGAAT-----AACC--TGCTATCAAGT-AA-C------------------CA-ATT-----------------------CAG-------------------------------------------------------------------------------------------T----------------------------------TTTATCT---------TTAAAT---TCCT---ATAGTATCCGGTGCGTCATGGTCTGGTGGAGGACTGGGATTTAATGGAGCGATT	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACTTCTTCATCGGCGATGAGGCCTTCGATGCCACCGGCTACTCCATCAAGGTATGCTCT-----------------------TGTAT-----CTAT--GGTCATTAAGC-AA-C------------------CGACAT-----------------------CAC-------------------------------------------------------------------------------------------A----------------------------------TTTATCA---------TTGCAT---TCCA---ATAGTATCCGGTGCGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGCTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................................GGTGCGTCATGGTCTGGTGGA........................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................CTGGTGGAGGACTGGGACTTGATGGA......	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GGCGATGAGGCCTTCGATGCCACCG....................................................................................................................................................................................................................................................................................................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................GTATCCGGTGCGTCATGGTCTGGTG..........................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TGCGTCATGGTCTGGTGGAGGA.....................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GACTGGGACTTGATGGAGCGC..	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................GGTCTGGTGGAGGACTGGGA...............	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GGACTGGGACTTGATGGAGCG...	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................................................CGGTGCGTCATGGTCTGGTGGAGGA.....................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................................................................................................................................................................................................................GTGCGTCATGGTCTGGTGGAG.......................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................................................................................................................................................................................................................................................................TCATGGTCTGGTGGAGGA.....................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................................................................................................................................................................................................................................................................................GACTGGGACTTGATGGAG.....	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GGACTGGGACTTGATGGAGC....	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TGCGTCATGGTCTGGTGGAGG......................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TATGCTCT-----------------------TGTAT-----CTAT--GGT...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GAGGACTGGGACTTGATGGA......	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GTCATGGTCTGGTGGAGG......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GATGAGGCCTTCGATGCCACCGGCT.................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GGAGGACTGGGACTTGATGG.......	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AGGACTGGGACTTGATTA.......	18	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ACTTCTTCATCGGCGATGAGGCCTTCGATGCCACCGGCTACTCCATCAAGGTATGCTCT-----------------------TGTAT-----CTAG--GCCCATTAAGC-AA-T------------------CG--AT-----------------------CAC-------------------------------------------------------------------------------------------A----------------------------------TTTATTA---------TGGTAT---TCCA---ATAGTATCCGGTGCGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGCTT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................GAGGACTGGGACTTGATGGA......	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GGTCTGGTGGAGGACTGGGA...............	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................TTTATTA---------TGGTAT---TCCA---AT....................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................GTATCCGGTGCGTCATGGT................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GGAGGACTGGGACTTGATGGAGC....	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................GTATCCGGTGCGTCATGGTC...............................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TCATCGGCGATGAGGCCTTCGATGCCACC.....................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GAGGACTGGGACTTGATGGAGC....	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GGTGCGTCATGGTCTGGT...........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............GATGAGGCCTTCGATGCCACC.....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................CTGGTGGAGGACTGGGACTTGAT.........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................TCTGGTGGAGGACTGTA................	17	15	0.07	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

ACTTCTTCATCGGCGATGAGGCCTTCGATGCCACCGGCTACTCCATTAAGGTATGCTCT-----------------------TGTAT-----CTAT--GGCCATTAAGC-AA-C------------------CGACA--------------------------T-------------------------------------------------------------------------------------------A----------------------------------TTTATCA---------TGGCAT---TCCA---ATAGTATCCGGTGCGTCATGGTCTGGTGGAGGACTGGGACTTGATGGAGCGCTT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................................................................................................................GGGACTTGATGGAGCGCTT	19	1	1.00	1	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................CTGGTGGAGGACTGGGACTTGATGGA......	26	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................CGGTGCGTCATGGTCTGGTGGAG.......................	23	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................GTCTGGTGGAGGACTGGGACTTGATG........	26	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................ACTGGGACTTGATGGAGC....	18	1	1.00	1	0	0	1	0
.......CATCGGCGATGAGGCCTTCGAT...........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................CTGGTGGAGGACTGGGACTTGATGGAGC....	28	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................GGTGCGTCATGGTCTGGTG..........................	19	1	1.00	1	1	0	0	0

droYak3

ACTTCTTCATTGGCGATGAGGCCTTTGATGCCACCGGCTACTCCATCAAGGTATGCTCT-----------------------TTTAT-----TTAT--TGTTGATAGGC-AA-C------------------CA-CAT-----------------------CAC-------------------------------------------------------------------------------------------G----------------------------------T-TAACA---------TTGCAT---TCCA---ACAGTACCCGGTGCGTCATGGTTTGGTGGAGGATTGGGATTTGATGGAGCGCTT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGAGGATTGGGATTTGATG........	26	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..............GATGAGGCCTTTGATGCCACCGGCTAC...............................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
...........................ATGCCACCGGCTACTCCATCA........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GGAGGATTGGGATTTGATGGAGCG...	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GGTGCGTCATGGTTTGGTGGAGG......................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTTTGGTGGAGGATTGGG................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GGTTTGGTGGAGGATTGGGATTTGATG........	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................GCCACCGGCTACTCCATCAA.......................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................GGTGGAGGATTGGGATTTGATG........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................CGTCATGGTTTGGTGGAGGATTGGGA...............	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................TGCCACCGGCTACTCCATCAA.......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GAGGATTGGGATTTGATGGA......	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................GTCATGGTTTGGTGGAGGATT...................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................AGGCCTTTGATGCCACCGGC..................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ATTGGGATTTGATGGAGCGC..	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............CGATGAGGCCTTTGATGCCACC.....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GTGGAGGATTGGGATTTGATGG.......	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............GATGAGGCCTTTGATGCCACC.....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................GGTGGAGGATTGGGATTTGATGGA......	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TGGTTTGGTGGAGGATTGGGA...............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................GAGGCCTTTGATGCCACCGGCT.................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

ACTTCTTTATCGGCGATGAGGCCTTCGATGCCACCGGCTACTCCATCAAGGTATGCTCT-----------------------TGCGT-----CTGT--TGTCATTAAAC-AA-C------------------CG-CAT-----------------------CTC-------------------------------------------------------------------------------------------A----------------------------------TATATGA---------TGACAT---TCCA---ACAGTACCCGGTGCGCCATGGTCTGGTGGAGGACTGGGATTTGATGGAGCGCTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................GGAGGACTGGGATTTGATGG.......	20	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GGTCTGGTGGAGGACTGGGA...............	20	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTCTGGTGGAGGACTGGGATT.............	21	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GGACTGGGATTTGATGGAGCG...	21	1	1.00	1	0	0	0	0	1	0	0
....CTTTATCGGCGATGAGGCCTTCGA............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GAGGACTGGGATTTGATGGA......	20	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................GTCTGGTGGAGGACTGGGAT..............	20	1	1.00	1	0	0	0	0	1	0	0
................TGAGGCCTTCGATGCCACCGGC..................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GTCTGGTGGAGGACTGGGATTTGAT.........	25	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................AGGACTGGGATTTGATGGA......	19	1	1.00	1	0	0	0	0	1	0	0

dmo_2448

scaffold_6680:11405037-11405195 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-33.8	-33.8	-33.8