dmo_2419

intron [Dmoj\GI12138-in]; exon [dmoj_GLEANR_12174:31]; CDS [Dmoj\GI12138-cds]; CDS [Dmoj\GI12138-cds]; exon [dmoj_GLEANR_12174:30]; intron [Dmoj\GI12138-in]

Name	Class	Family	Strand
(CTG)n	Simple_repeat	Simple_repeat	+

##################################################---------------------------------------------------------------------------------##############################################---- GCCAGGAGGGCGACGATCTACCGCCGAGCGTGGGCGGCATGGTGCACTATGTACCCCAATCCCAGCAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCTGCAGCAGCTACAGCAACAGCCGCTGCCACAGCCGGGCGGCTTTCGCAGTCGCAGCAAGACGCTGGGCGATGTGACAGGTAA ************************************************..............(((((.((.((...(((....((.(((((....))))).)).)))...))....)).))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M060 embryo	V056 head	V110 male body	M046 female body
........................................................................................................................CGCTGCAACATCCGGGAGG..........................................	19	3	13	0.08	1	0	1	0	0
..........................ACCGTGGGCGGGATGATGC........................................................................................................................................	19	3	15	0.07	1	0	0	1	0
.....CAGTCCGACGATCTACCG..............................................................................................................................................................	18	3	20	0.05	1	1	0	0	0
...........................................................................AACAGCAACAGCAGCAGCAGCA....................................................................................	22	0	20	0.05	1	1	0	0	0
......AGTCCGACGATCTACCGT.............................................................................................................................................................	18	3	20	0.05	1	0	0	0	1
.........CCGACGATCTACCGCCCC..........................................................................................................................................................	18	3	20	0.05	1	1	0	0	0

CGGTCCTCCCGCTGCTAGATGGCGGCTCGCACCCGCCGTACCACGTGATACATGGGGTTAGGGTCGTCGTCGTCGTTGTCGTTGTCGTCGTCGTCGTCGACGTCGTCGATGTCGTTGTCGGCGACGGTGTCGGCCCGCCGAAAGCGTCAGCGTCGTTCTGCGACCCGCTACACTGTCCATT ************************************************..............(((((.((.((...(((....((.(((((....))))).)).)))...))....)).))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	M046 female body	V049 head	V056 head
........CCGCTACGAGATGGCGACTC.........................................................................................................................................................	20	3	8	0.38	3	2	1	0	0
.......................................................................................................................GGCGTCGGTGTCGGCTCGC...........................................	19	2	10	0.10	1	0	0	1	0
............................................................................................................CTGTCGTTGGGGGCGACGGT.....................................................	20	3	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6680:9135117-9135297 -	dmo_2419	GCCAGGAGG--GCGACGA--T-----------------CTA-------------------------------------------------CCGCCGAGCGTGGGCG-GCATGGTGCAC-T--A---------------------TGT-----------------------------AC------------CCCAATCCCAGC---AGCAGCAGCAACAG---------CA------------AC------------------------------AGCAGCAGCAGCAGC--TGCAGCAGC------------------T---ACAG-----------------CAA---CAGCC------------GCTGCC-----ACAGC----CGGGCGGCTTTC-------------GCAGTC-------------------------GC---AG-CAAGAC-----------------------------------------------GCTGGGCGAT-GTGACAG---GTAA-----
droVir3	scaffold_12928:6353938-6354118 -		GCGAGGAGG--AGCAG--------CG---AG--------AG---------------------------------------------GTTGCCGCCGCTG-----------TCGAGCTG-C--A---------------------CGA---------------------G--------G------CGC---A------------G------------CAG---------CA------------ACAGCAGCAGCAGCAG------CAACAGCAACAACAGCAACAGCAGC--TGCAGCAGC------------------A---GCAG-----------------CAG---CAGCG-C------------------------------------------------------------------------G--ACTCC---GC-CGAGCT-------GCAGGCGGTAACAGCCGCTGCCGAGAGCAGCGC-----------------------GC-GCA----GCAACAA-----
droGri2	scaffold_15110:11147697-11147844 +		GTCAGGAGG--GCGATGA--T-----------------CTG-------------------------------------------------CCGCCCAGCGTGGGCGT-G---GTCCAC-T--A---------------------TGCGGCA---CA--------CAC-AC-----AAC------------------------AG------------CTG---------CA------------GCAGCAACAACAACAA------------------CAGCAGCAGCA--AC-----------------------------------------------------------------------------------------------CGGGCGGCTTTC-------------GCAGTC-------------------------GC---AG-CAAGAC-----------------------------------------------GCTGGGTGAT-GTTACAG---GTAA-----
droWil2	scf2_1100000013329:996-1165 -		GGCAGGAGG--CGGAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGAAC-G--------------------------GCTG----G-------CGATGGCAATGC-TACAAC-----AAC------AGCAACA------------G------------CAG---------CA---ACAATGGCAGCAACAACAACAAC------------------TGCAGCAGCAACA--------------------ATTG-----------------------------------CAG------CAACAACAGCAA--------------------------CAGCAGCAACAATG----GCAGCAAC----------------------------AA-CA----------------------------------------------------------ACA-GCA----ACAACAA-----
dp5	XL_group1e:10794570-10794744 +		GCGGTGGCT--GTGGCG---G------------------------------------------------------------------TGCCCGCCACCCAGCAGCA-G----------------------------------------------------------CATC-----AGC------------A------------C------------CAG---------CAACAGCACCAGCAATCGCAGCCGCCGACGCAACAGCAGCAG------CACCAGCAGCAGC--ACCAGCAG--------------------------------------------CA---------------------A--------------------------CAGCAGCAGCATCA----GC---AGCAGCAGGTGCGGCATCGGC-GGG-GC---AG-CACCTC-----------------------------------------------GTCGGGTGAT-G------------------
droPer2	scaffold_9:2949605-2949796 -		ACCACGGCC--GCGACGA--GC-----------------AT-------------------------------------------------CAGCCTGGCGGATGCG-GC----------------------------------------------------------ATC-----CGC------------A------------G------------GGG---------CAGCAGCAGTGGCAGCGGCATCTGCAGCGGCATCGGCAGCAGCATCGGCAGCAGCATCAGC--CGCAGCAGC------------------G---GCAG-----------------CAG---CAGCG------------GCGGCC---------------------------------------GCAGAGG---------CGGCCCAAAT-AGAGGT---AGACAAGTC-----------------------------------------------GGGGGGCGTCATCCACA---ATCAG-----
droAna3	scaffold_13337:4359406-4359571 +		GCCCTG--G--AGGAGGA--GGAGGA---GGAGGGAGC-GG-GCAGCCGGCGCACCAACAGCAGCAGCAACA----------------------------------------------------------------------------------------------TAGC-----AAC------------------------AC------------CAG---------CA------------ACAACAACAACAACAG------------------CAGCAGCAGCA--AC---------ATCAACAGCAACAACGGT----G--------------------------------CAACAGC-----------------------------------AACAGCAACAGTGAGCAGCAGC----------------------------AG-CA--------------------------------------------------------------ACA----ACAGTAG-----
droBip1	scf7180000396691:1593618-1593787 -		ACCTAAACG--GCAACAC---------------------GG-------------------------------------------------CTGCCAACTGCTGGCA-AC-------------A---------------------TGT----TGCTAA---------TGGT-----GCCACCAAAAGC---A------------C------------CAG---------CA------------ACAGCAGTAGCACCAG------CAGCGGC---TGCGACAGCA--------------------ACAGCTC---------CTCCA-AGGAGAACTACTACAT---------GCCCCAGCAAC-----------------AG------------------C----------------GCCTGC---------GGGGTGTGAC-C------------------------------------------------------------------------CC----CCAGCAA-----
droKik1	scf7180000302392:163615-163790 +		GCCAGCTGG--CGGT-GG--C-----------------CTC-------------------------------------------------CCAGGCAGCCATGGCG-GC-------------AGCAGCTGCAGCGGCCTTCAA-TGCGGCG---CA-------A--CAGC-----AGC------------------------AG------------CAG---------CA------------ACAGCATCAGCAGCAG------------------CAACACCAGCA--AT---------CCCAGCAGCAGCAACAGCAAACCCC-A----------------------------CAACAGC-----------------------------------AGCA---GCAA-TCGCAGCAGC----------------------------AG-CA--------------------------------------------------------------GCT----GCAACAG-----
droFic1	scf7180000452523:600097-600283 -		GCCAGCGGG--AGCAGGA--GCAGCA------------------------------------------------------------------GGAGAACATGGTCAA-GATCAAGCAG-C--A---------------------CGC------C------------CGGC-----AGC------------------------AG------------CAG---------CA------------GCAGCACCAGCAACAG------------------CAGCAGCAGCA--AC---------ATCAGCAGCAGCAGC---A---GCAG-----------------CAA---C-----------------------------------------------ACCA---CCAG-TCGCAGCAGCAGC---------GATTTTTGGG-CCACCA-------GCCGGCA---CTTTCG--------------------CCGCATCCACAT-------C-------------GTCT-----
droEle1	scf7180000490751:1099563-1099742 -		GCAACAGGC--GCAACA---G------------------------------------------------------------------TTGCCGCCGGGCGTGGGAAT-TGCCAGTCCGCTGCA----------------------------------------A--CAGC-----AGC------------A------------G------------CAG---------CA------------ACAGCAGCAGCAACAG------CAGCAAC---AGCAACAGCA--------------------ACAGCAGCAAC---A---GCAG----CAG----------CAA---CAGCA------------GCTG---ATCAACAACGGAG-----------------------G-----------------CGTCTCC-----GC----------------------------CG--------------------GCACACCCACGC-------TGC-TCA----TCGGCAA-----
droRho1	scf7180000779986:238620-238773 +		GCTCCGAGC-------TG--C-----------------CCA-------------CCAGCGAG--TG---------------------TG--AACTGGGCATGGGACT-G-----------------------------------ACC------------------ACCAGAAAGATCC---------------------AGC---AGCAGCAGCAGCAA---------CA------------ACAG------------------------------CAGCAGCAGCAGG--TCCAGCAGC------------------A---ACAA-----------------CAG---CAG---CAGCAGGT---GC-----------AG------------CCTGTCCA---GCTG-GCGCAGCAGC----------------------------AA-CA---------------------------------------------------------------------------------
droBia1	scf7180000302292:4248291-4248478 +		ACGAGCGCT--ACGATGA--CGAGGAGGAGG----AG-CTG------------------------------------------------CCCGCCGCG-----CCAA-GGCCACGCAT--------------------------------------------------C--------C---------------------AGCATCAGCAGCAGCAGCAC---------CA------------CCAGCAGC------------------------------AGCAACACC--ACCAGCAGC------------------A---ACAG-----------------CAA---CAGCCCCAGCAGC-----------------AG------------------C----------------ATCGCC---------AGGTGGTGGC-CTACCA-------GCAGCCA---CAG-CA--------------------GCAGC-------CCCAAGTGAG-GGTA----CAATAC-----
droTak1	scf7180000415671:279410-279576 +		GCCAGGTGG--GCGGGGT--C-----------------ATG-------------------------------------------------CC-CCAGGCGCAGACC--A--------------------------ACGG----T-------CAGTTGGGGTGC-CCCAGC-----AGC------------A------------G------------CAA---------CA------------GCAGCAGCAGCAGC------------------------AACAGC-----CCACGCAGAACCAGCAGCAG---------GTG-----------------------ACG------CAACAGGTGACA--------------------------CATCCGCAGCAGCA----GC---AGC------------------------------------------------------------------------------------AACAGGTGAC-GCAACAG---GTGA-----
droEug1	scf7180000409462:2452917-2453107 -		GGCAATAGC--GGTAA-C-----------------------------------------------------GTTTTAGCGCCAACAATTTCCGCCACAGATA-----------CG---TTGCA----------------------------------------T--CATC-----ATC------------A------------C------------CAC---------GA---------------ACTGCAGCAACAA---CAACAGCAAC---AACAACAGCAGCAGC--AGCAGCAAC------------------A---ACAT-----------------CAG---CAGCC------------GCAGCCGCTGGGCAATGTGG-----------------------GCGCCGCCGC------------------------------------------------------------GAATATTGTGCGGCGCAATA------------TC-GCTGCAG---GTAA-----
dm3	chr3L:5732309-5732438 +		GCCAGGAGG--CGGACGA--C-----------------CTG-------------------------------------------------CCACCCAGTGTGGGCGT-G---GTCCAC-TACG---------------------CCT------C------------CGGC-----CAC------------------------AC------------CCA---------CG------------GC--------------------------------CAGCAGATGCA--GC-----------------------------------------------------------------------------------------------CAGCTGGATTCC-------------GCGGTC-------------------------GC---AG-CAAGAC-----------------------------------------------GGTGGGCGAT-GTTACAG---GTGA-----
droSim2	2l:8926962-8927147 +		GCCAGCGGAGGC---GGA--GCTGGT---GCTGGGGGC-GTGGCA---GGCGCCTCAACAG-----------------------------CAGCGGCACTTA---------CAC-----T---------------------------------C------------CAGC-----AAC------------------------AT------------CAG---------CA------------TCAGCAGCAGCAACAA------------------CAGCAGCAGCA--AG---------CGCAACAGCAGCATCAGCATCAGCAC-----------------------------CAGCATC-----------------------------------AGCA---GCAG-GCGCAACAGC----------------------------AG-CAATTG-----------------------------------------------GCC----TACCAGCA---CCAGCAA-----
droSec2	scaffold_6:3263798-3263979 -		GACAGGAGC--GACAGGA--AC-----------------AA--------------------------CTG-----------------C--TGGGGCA-----------GCTGGAGCAA-C--A---------------------GGA---------------------A--------C------------CACAGGGGCA---G------------CTA---------CG------------GCAGCCGGAGCAAC------------------------AGGAGCAGC--TGGAGC---TGGAGCAGCTG--------------------------------------GAGCT------------GGAGCCGC-----------------------TGGA---CCTG-GAGCAGCTGG------AACAACATTGGCCGGA-GC---AG-CA---G-------------------------------------------------CTGGTGAT-ACCGCAG---GGAAAACCG
droYak3	X:19080987-19081150 -		ACGAGGAGG--AGGACGA--AGAGGA------------------------------------------------------------------GGAG---------G----AGGAGCAG-G--A---------------------TGTGTCG--------------------------------------------------------------CAGCAACAACAGCAGCA------------GCAGCAGCAACAGCA---------------------GCAACAACTGG--CGG------CGGAGCAGCAGCAAC-------------------------GTG---CTG------CAGCAGC-----------------------------GGCAGCT------GTAG-TTGCAGCGGC-----------------------------------AG-------------------------TTAGTGCG-------------C-------TGC-ACAACG----GCAA--C--
droEre2	scaffold_4770:10776667-10776827 -		GCCAGCGGG--AACAGGA--GCAGCA------------------------------------------------------------------GGAGAACATGGTCAA-GATCAAGCAG-C--A---------------------CGC------A------------CGCC-----AGC---------------------------AGCAGCAGCAGCAG---------CA------------ACAGCAGC------------------------------ATCACCAGC--AGCAGCAGC------------------A---ACAC-----------------CAC---CAGGCCCAGCAGC-----------------AG------------------C----------------AGC------------GATTCCTGGG-CCACCA-------GCAGGC-----------------------------------------------------GCT----GTCGCCG-----

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GCCAGGAGG--GCGACGA--T-----------------CTA-------------------------------------------------CCGCCGAGCGTGGGCG-GCATGGTGCAC-T--A---------------------TGT-----------------------------AC------------CCCAATCCCAGC---AGCAGCAGCAACAG---------CA------------AC------------------------------AGCAGCAGCAGCAGC--TGCAGCAGC------------------T---ACAG-----------------CAA---CAGCC------------GCTGCC-----ACAGC----CGGGCGGCTTTC-------------GCAGTC-------------------------GC---AG-CAAGAC-----------------------------------------------GCTGGGCGAT-GTGACAG---GTAA-----	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................................................AACAG---------CA------------AC------------------------------AGCAGCAGCAGCA......................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0

droVir3

GCGAGGAGG--AGCAG--------CG---AG--------AG---------------------------------------------GTTGCCGCCGCTG-----------TCGAGCTG-C--A---------------------CGA---------------------G--------G------CGC---A------------G------------CAG---------CA------------ACAGCAGCAGCAGCAG------CAACAGCAACAACAGCAACAGCAGC--TGCAGCAGC------------------A---GCAG-----------------CAG---CAGCG-C------------------------------------------------------------------------G--ACTCC---GC-CGAGCT-------GCAGGCGGTAACAGCCGCTGCCGAGAGCAGCGC-----------------------GC-GCA----GCAACAA-----	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............G--------CG---AG--------AG---------------------------------------------GTTGCCGCCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............GCAG--------CG---AG--------AG---------------------------------------------GTTGCCGCCGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................G---------CA------------ACAGCAGCAGCAGCA....................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................GCAGCAGCAG------CAACAGCAAC...................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................CAACAGCAGC--TGCAGCAGC------------------A---GCA................................................................................................................................................................................................................	23	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................A------------G------------CAG---------CA------------ACAGCAGCAGCAGC.....................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................CA------------ACAGCAGCAGCAGCAG------C............................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................GCAGC------------------A---GCAG-----------------CAG---CAGCG-C------------------------------------------------------------------------G--......................................................................................................	20	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GCAG------CAACAGCAACAACAGCAACAG........................................................................................................................................................................................................................................................	25	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................G---------CA------------ACAGCAGCAGCAGCAG------C............................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................CAG---------CA------------ACAGCAGCAGCAGCAG------CAAC.........................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................CAACAGCAACAACAGCAACAG........................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................G---------CA------------ACAGCAGCAGCAGCAG------CAA..........................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CGC---A------------G------------CAG---------CA------------ACAGCAGCA..........................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................AG------CAACAGCAACAACAGCAACAGC.......................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CGC---A------------G------------CAG---------CA------------ACAGCAGCAGCA.......................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................CA------------ACAGCAGCAGCAGCAG------CAAC.........................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................G---------CA------------ACAGCAGCAGCAGCAG------CAACAGC......................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................AACAGCAGC--TGCAGCAGC------------------A---...................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droGri2

GTCAGGAGG--GCGATGA--T-----------------CTG-------------------------------------------------CCGCCCAGCGTGGGCGT-G---GTCCAC-T--A---------------------TGCGGCA---CA--------CAC-AC-----AAC------------------------AG------------CTG---------CA------------GCAGCAACAACAACAA------------------CAGCAGCAGCA--AC-----------------------------------------------------------------------------------------------CGGGCGGCTTTC-------------GCAGTC-------------------------GC---AG-CAAGAC-----------------------------------------------GCTGGGTGAT-GTTACAG---GTAA-----	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

GGCAGGAGG--CGGAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGAAC-G--------------------------GCTG----G-------CGATGGCAATGC-TACAAC-----AAC------AGCAACA------------G------------CAG---------CA---ACAATGGCAGCAACAACAACAAC------------------TGCAGCAGCAACA--------------------ATTG-----------------------------------CAG------CAACAACAGCAA--------------------------CAGCAGCAACAATG----GCAGCAAC----------------------------AA-CA----------------------------------------------------------ACA-GCA----ACAACAA-----	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............GAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	9	2.44	22	0	21	0	1	0
.............GAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	9	2.11	19	0	19	0	0	0
.............GAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	1.56	14	0	12	1	1	0
.............GAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	9	1.11	10	0	10	0	0	0
..............................................................................................................................................................AATGC-TACAAC-----AAC------AGCAACA------------G------------CA...........................................................................................................................................................................................................................................................................................................................	24	4	0.50	2	0	2	0	0	0
..................GAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGAAC-G--------------------------G.............................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.46	6	0	6	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAA--------------------------CAGCAGCAACAATG----G.........................................................................................................................	26	20	0.35	7	0	7	0	0	0
.......................................................................................................................................................................AAC-----AAC------AGCAACA------------G------------CAG---------CA---ACAATGG.....................................................................................................................................................................................................................................................................................................	26	20	0.35	7	0	7	0	0	0
.............GAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGAAC-G--------------------------G.............................................................................................................................................................................................................................................................................................................................................................................................................	27	9	0.33	3	0	3	0	0	0
.............GAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	9	0.33	3	0	3	0	0	0
...................................................................................................................................................................................................................................................CAACAACAACAAC------------------TGCAGCAGCAACA--------------------..................................................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0
..................GAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGAAC-G--------------------------GC............................................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.31	4	0	4	0	0	0
............................................................................................................................................................................................................................................ATGGCAGCAACAACAACAAC------------------TG.................................................................................................................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0
.....................................................................................................................................................................................................................................A---ACAATGGCAGCAACAACAACAAC------------------TG.................................................................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	1	0
.............................................................................................................................................................CAATGC-TACAAC-----AAC------AGCAACA------------G------------CAG---------C................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	1	0
.............................................................................................................................................................CAATGC-TACAAC-----AAC------AGCAACA------------G------------CAG---------.................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0
........................................................................................................................................................GATGGCAATGC-TACAAC-----AAC------AGC..........................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0
..............................................................................................................................................................AATGC-TACAAC-----AAC------AGCAACA------------..........................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0
................................................................................................................................................................TGC-TACAAC-----AAC------AGCAACA------------G------------CAG---------CA---AC..........................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	1	0
..........................................................................................................................................................................................................................................CAATGGCAGCAACAACAACAAC------------------TG.................................................................................................................................................................................................................................................................	24	4	0.25	1	0	0	0	1	0
...............................................................................................................................................G-------CGATGGCAATGC-TACAAC-----AAC------A............................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0
..........................................................................................................................................G----G-------CGATGGCAATGC-TACAAC-----AAC------AG...........................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0
..........................................................................................................................................G----G-------CGATGGCAATGC-TACAAC-----AAC------A............................................................................................................................................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0
..............................................................................................................................................................AATGC-TACAAC-----AAC------AGCAAC.......................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0
..................................................................................................CCAGGGAAC-G--------------------------GCTG----G-------CGATGGC.......................................................................................................................................................................................................................................................................................................................................................................................	22	12	0.17	2	0	2	0	0	0
..................GAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGAAC-G--------------------------GCT...........................................................................................................................................................................................................................................................................................................................................................................................................	25	13	0.15	2	0	2	0	0	0
...........................................................................................................................................................................................................................................................................................AACA--------------------ATTG-----------------------------------CAG------CAACAACAGCA.......................................................................................................................................................................	22	20	0.15	3	0	1	0	2	0
...........................................................................................................................................................................................................................................................................................................................................................AG------CAACAACAGCAA--------------------------CAGCAGCAA...................................................................................................................................	23	20	0.15	3	0	3	0	0	0
...........................................................................................................................................................................................................................................................................................AACA--------------------ATTG-----------------------------------CAG------CAACAACAG.........................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0
.......................................TA-------------------------------------------------CC--CAGGCCAGGGAAC-G--------------------------GCTG----......................................................................................................................................................................................................................................................................................................................................................................................................	22	14	0.14	2	0	2	0	0	0
....GGAGG--CGGAA-CGAT-----------------TTA-------------------------------------------------CC--CAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	1	0	0	0
....GGAGG--CGGAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	9	0.11	1	0	1	0	0	0
........G--CGGAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	9	0.11	1	0	1	0	0	0
............GGAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	1	0	0	0
......AGG--CGGAA-CGAT-----------------TTA-------------------------------------------------CC--C......................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	9	0.11	1	0	1	0	0	0
............GGAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	1	0	0	0
....GGAGG--CGGAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	1	0	0	0
..............AA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	9	0.11	1	0	1	0	0	0
..............AA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	1	0	0	0
.............GAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	1	0	0	0
.............GAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGAAC-G--------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................	26	9	0.11	1	0	1	0	0	0
.......GG--CGGAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	9	0.11	1	0	1	0	0	0
..CAGGAGG--CGGAA-CGAT-----------------TTA-------------------------------------------------CC--CAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	1	0	0	0
.............GAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	1	0	0	0
..CAGGAGG--CGGAA-CGAT-----------------TT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	9	0.11	1	0	1	0	0	0
............GGAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	9	0.11	1	0	1	0	0	0
............GGAA-CGAT-----------------TTA-------------------------------------------------CC--CAGGCCAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	9	0.11	1	0	1	0	0	0
...AGGAGG--CGGAA-CGAT-----------------TTA-------------------------------------------------CC--CAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................TG-----------------------------------CAG------CAACAACAGCAA--------------------------CAGCAG......................................................................................................................................	23	20	0.10	2	0	2	0	0	0
.........................................................................................................................................................................................................................................................CAACAAC------------------TGCAGCAGCAACA--------------------ATTG-----------------------------------C..........................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CAACAATG----GCAGCAAC----------------------------AA-CA----------------------------------------------------------ACA-G..................	24	20	0.10	2	0	1	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................AG------CAACAACAGCAA--------------------------CAGCAG......................................................................................................................................	20	20	0.10	2	0	2	0	0	0
.....................................................................................................................................................................................................................................................ACAACAACAAC------------------TGCAGCAGC..........................................................................................................................................................................................................................................................	20	10	0.10	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................AACAGCAA--------------------------CAGCAGCAACAATG----G.........................................................................................................................	23	20	0.10	2	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AACAGCAA--------------------------CAGCAGCAACAATG----GC........................................................................................................................	24	20	0.10	2	0	2	0	0	0
..................................................................................................CCAGGGAAC-G--------------------------GCTG----G-------CGATGGCAA.....................................................................................................................................................................................................................................................................................................................................................................................	24	12	0.08	1	0	1	0	0	0
....................................................................................................................................................................TACAAC-----AAC------AGCAACA------------G------------CA...........................................................................................................................................................................................................................................................................................................................	19	12	0.08	1	0	1	0	0	0
.................................................................................................GCCAGGGAAC-G--------------------------GCTG----G-------CGATGG........................................................................................................................................................................................................................................................................................................................................................................................	22	12	0.08	1	0	1	0	0	0
..................GAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	13	0.08	1	0	1	0	0	0
...................AT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGAAC-G--------------------------GCT...........................................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0
..................GAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGAAC-G--------------------------GCTG----......................................................................................................................................................................................................................................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0
..................GAT-----------------TTA-------------------------------------------------CC--CAGGCCAGGGAAC-.........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0
.......................................TA-------------------------------------------------CC--CAGGCCAGGGAAC-G--------------------------G.............................................................................................................................................................................................................................................................................................................................................................................................................	19	14	0.07	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................TG-----------------------------------CAG------CAACAACAGCAA--------------------------CAGCA.......................................................................................................................................	22	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................G-----------------------------------CAG------CAACAACAGCAA--------------------------CAG.........................................................................................................................................	19	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................ACAAC-----AAC------AGCAACA------------G------------CAG---------CA---ACAA........................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................AACA--------------------ATTG-----------------------------------CAG------CAACAACAGCAA--------------------------............................................................................................................................................	23	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................TTG-----------------------------------CAG------CAACAACAGCAA--------------------------CAGCAG......................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................TG-----------------------------------CAG------CAACAACAGCAA--------------------------CAGCAGC.....................................................................................................................................	24	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................AGCAA--------------------------CAGCAGCAACAATG----GCAG......................................................................................................................	23	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................CAACAAC------------------TGCAGCAGCAACA--------------------ATTG-----------------------------------CAG------C.................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AATG----GCAGCAAC----------------------------AA-CA----------------------------------------------------------ACA-GCA----ACA.........	25	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................AACAATG----GCAGCAAC----------------------------AA-CA----------------------------------------------------------ACA-GCA----............	25	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TG----GCAGCAAC----------------------------AA-CA----------------------------------------------------------ACA-GCA----ACAA........	24	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................A--------------------ATTG-----------------------------------CAG------CAACAACAGCAA--------------------------CAGC........................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AATG----GCAGCAAC----------------------------AA-CA----------------------------------------------------------ACA-GCA----ACAAC.......	27	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................AACA--------------------ATTG-----------------------------------CAG------CAACAACAGCAA--------------------------C...........................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AATG----GCAGCAAC----------------------------AA-CA----------------------------------------------------------ACA-GCA----............	22	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................AACA--------------------ATTG-----------------------------------CAG------CAACAACAGC........................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................AG---------CA---ACAATGGCAGCAACAACAACA.......................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CAACAATG----GCAGCAAC----------------------------AA-CA----------------------------------------------------------ACA-GC.................	25	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAA--------------------------CAGCAGCAACAATG----GC........................................................................................................................	27	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................CA------------G------------CAG---------CA---ACAATGGCAGCAA...............................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAATG----GCAGCAAC----------------------------AA-CA----------------------------------------------------------ACA-...................	25	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................CAACA--------------------ATTG-----------------------------------CAG------CAACAACAGCAA--------------------------............................................................................................................................................	24	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................CAACAGCAA--------------------------CAGCAGCAACAATG----G.........................................................................................................................	24	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AATG----GCAGCAAC----------------------------AA-CA----------------------------------------------------------ACA-GC.................	21	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................AACAAC------------------TGCAGCAGCAACA--------------------ATTG-----------------------------------...........................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................C-----AAC------AGCAACA------------G------------CAG---------CA---ACAATGG.....................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................AACAAC------------------TGCAGCAGCAACA--------------------ATT...............................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TG----GCAGCAAC----------------------------AA-CA----------------------------------------------------------ACA-GCA----ACAACAA-----	27	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................A------------G------------CAG---------CA---ACAATGGCAGCAACAACA..........................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................AGCAACA------------G------------CAG---------CA---ACAATGGCAG..................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................AACAATG----GCAGCAAC----------------------------AA-CA----------------------------------------------------------ACA-GC.................	24	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................CAACAGCAA--------------------------CAGCAGCAACAATG----GC........................................................................................................................	25	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................ACAAC-----AAC------AGCAACA------------G------------CAG---------CA---AC..........................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAATG----GCAGCAA...................................................................................................................	21	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................G----GCAGCAAC----------------------------AA-CA----------------------------------------------------------ACA-GCA----AC..........	21	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAA--------------------------CAGCAGCAACAATG----G.........................................................................................................................	25	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................AACAACAAC------------------TGCAGCAGCAAC.......................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0

dp5

GCGGTGGCT--GTGGCG---G------------------------------------------------------------------TGCCCGCCACCCAGCAGCA-G----------------------------------------------------------CATC-----AGC------------A------------C------------CAG---------CAACAGCACCAGCAATCGCAGCCGCCGACGCAACAGCAGCAG------CACCAGCAGCAGC--ACCAGCAG--------------------------------------------CA---------------------A--------------------------CAGCAGCAGCATCA----GC---AGCAGCAGGTGCGGCATCGGC-GGG-GC---AG-CACCTC-----------------------------------------------GTCGGGTGAT-G------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................CATC-----AGC------------A------------C------------CAG---------CAACAGC..........................................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................CAACAGCAGCAG------CACCAGC..........................................................................................................................................................................................................................................................	19	16	0.13	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................A--------------------------CAGCAGCAGCATCA----GC---AGCA.................................................................................................................	21	9	0.11	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................GCAACAGCAGCAG------CACCAGC..........................................................................................................................................................................................................................................................	20	11	0.09	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CA---------------------A--------------------------CAGCAGCAGCATCA----GC---.....................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................GCAG------CACCAGCAGCAGC--ACCA..............................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GCAG--------------------------------------------CA---------------------A--------------------------CAGCAGCAGCATC...............................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GCAGCAG------CACCAGCAGCAGC--..................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................ACCAGCAGCAGC--ACCAGCAG--------------------------------------------CA---------------------.......................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................AACAGCAGCAG------CACCAGC..........................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................G------CACCAGCAGCAGC--ACCA..............................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCATCA----GC---AGCAGCA..............................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CAGCAG--------------------------------------------CA---------------------A--------------------------CAGCAGCAGCATC...............................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

ACCACGGCC--GCGACGA--GC-----------------AT-------------------------------------------------CAGCCTGGCGGATGCG-GC----------------------------------------------------------ATC-----CGC------------A------------G------------GGG---------CAGCAGCAGTGGCAGCGGCATCTGCAGCGGCATCGGCAGCAGCATCGGCAGCAGCATCAGC--CGCAGCAGC------------------G---GCAG-----------------CAG---CAGCG------------GCGGCC---------------------------------------GCAGAGG---------CGGCCCAAAT-AGAGGT---AGACAAGTC-----------------------------------------------GGGGGGCGTCATCCACA---ATCAG-----	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................................................................................................................................................GCAGCATCAGC--CGCAGCAGC------------------G---GC.................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0

droAna3

GCCCTG--G--AGGAGGA--GGAGGA---GGAGGGAGC-GG-GCAGCCGGCGCACCAACAGCAGCAGCAACA----------------------------------------------------------------------------------------------TAGC-----AAC------------------------AC------------CAG---------CA------------ACAACAACAACAACAG------------------CAGCAGCAGCA--AC---------ATCAACAGCAACAACGGT----G--------------------------------CAACAGC-----------------------------------AACAGCAACAGTGAGCAGCAGC----------------------------AG-CA--------------------------------------------------------------ACA----ACAGTAG-----	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................................................................................................................................................AACAACAG------------------CAGCAGCAGCA--AC---------ATCAAC...................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0
..CCTG--G--AGGAGGA--GGAGGA---........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	5	0.20	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................AACAACAACAACAG------------------CAGCAGC..........................................................................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0
.....G--G--AGGAGGA--GGAGGA---GGAGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................CAACAACAACAG------------------CAGCAGCAGC.......................................................................................................................................................................................................................................................	22	20	0.10	2	0	1	0	0	0	1
.....................................................................................................................................................................................................................................A------------ACAACAACAACAACAG------------------CAGCA............................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	2
..........................................................................................................................................................................................................................................................AACAACAG------------------CAGCAGCAGCA--AC---------.........................................................................................................................................................................................................................................	21	20	0.10	2	0	1	0	0	0	1
..........................................................................................................................................................................................................................G---------CA------------ACAACAACAACAACAG------------------CAGC.............................................................................................................................................................................................................................................................	23	11	0.09	1	1	0	0	0	0	0
...CTG--G--AGGAGGA--GGAGGA---GGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	12	0.08	1	0	0	0	0	1	0
.....................................................ACCAACAGCAGCAGCAACA----------------------------------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................	19	17	0.06	1	0	0	0	0	0	1
.....G--G--AGGAGGA--GGAGGA---GGAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	18	0.06	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................A------------ACAACAACAACAACAG------------------CAGCAGCAGC.......................................................................................................................................................................................................................................................	27	19	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................AG---------CA------------ACAACAACAACAACAG------------------C................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................AACAACAG------------------CAGCAGCAGCA--AC---------A........................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................CAACAACAACAACAG------------------CAGCAGCA.........................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................ACAACAG------------------CAGCAGCAGCA--AC---------.........................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................ACAACAACAACAG------------------CAGCAGCAGCA--....................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................A------------ACAACAACAACAACAG------------------CAGCAGC..........................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................ACAACAACAG------------------CAGCAGCAGCA--AC---------A........................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................AACAACAACAG------------------CAGCAGCAGCA--AC---------.........................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................ACAACAACAACAG------------------CAGCAGCAGC.......................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................CAACAACAG------------------CAGCAGCAGCA--AC---------A........................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
...........AGGAGGA--GGAGGA---GGAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................CAACAACAACAG------------------CAGCAGCAGCA--AC---------.........................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
....TG--G--AGGAGGA--GGAGGA---GGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................AACAG------------------CAGCAGCAGCA--AC---------A........................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................G------------------CAGCAGCAGCA--AC---------ATCAAC...................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................AACAACAACAG------------------CAGCAGCAG........................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................ACAACAACAACAACAG------------------CAGCAGC..........................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
............GGAGGA--GGAGGA---GGAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................ACAACAACAACAACAG------------------CAGCAGCAGC.......................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
....TG--G--AGGAGGA--GGAGGA---GGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
....TG--G--AGGAGGA--GGAGGA---GGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................A------------ACAACAACAACAACAG------------------CAGC.............................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................ACAACAACAG------------------CAGCAGCAG........................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................ACAACAG------------------CAGCAGCAGCA--AC---------A........................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1

droBip1

ACCTAAACG--GCAACAC---------------------GG-------------------------------------------------CTGCCAACTGCTGGCA-AC-------------A---------------------TGT----TGCTAA---------TGGT-----GCCACCAAAAGC---A------------C------------CAG---------CA------------ACAGCAGTAGCACCAG------CAGCGGC---TGCGACAGCA--------------------ACAGCTC---------CTCCA-AGGAGAACTACTACAT---------GCCCCAGCAAC-----------------AG------------------C----------------GCCTGC---------GGGGTGTGAC-C------------------------------------------------------------------------CC----CCAGCAA-----	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCCAGCTGG--CGGT-GG--C-----------------CTC-------------------------------------------------CCAGGCAGCCATGGCG-GC-------------AGCAGCTGCAGCGGCCTTCAA-TGCGGCG---CA-------A--CAGC-----AGC------------------------AG------------CAG---------CA------------ACAGCATCAGCAGCAG------------------CAACACCAGCA--AT---------CCCAGCAGCAGCAACAGCAAACCCC-A----------------------------CAACAGC-----------------------------------AGCA---GCAA-TCGCAGCAGC----------------------------AG-CA--------------------------------------------------------------GCT----GCAACAG-----	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCCAGCGGG--AGCAGGA--GCAGCA------------------------------------------------------------------GGAGAACATGGTCAA-GATCAAGCAG-C--A---------------------CGC------C------------CGGC-----AGC------------------------AG------------CAG---------CA------------GCAGCACCAGCAACAG------------------CAGCAGCAGCA--AC---------ATCAGCAGCAGCAGC---A---GCAG-----------------CAA---C-----------------------------------------------ACCA---CCAG-TCGCAGCAGCAGC---------GATTTTTGGG-CCACCA-------GCCGGCA---CTTTCG--------------------CCGCATCCACAT-------C-------------GTCT-----	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCAACAGGC--GCAACA---G------------------------------------------------------------------TTGCCGCCGGGCGTGGGAAT-TGCCAGTCCGCTGCA----------------------------------------A--CAGC-----AGC------------A------------G------------CAG---------CA------------ACAGCAGCAGCAACAG------CAGCAAC---AGCAACAGCA--------------------ACAGCAGCAAC---A---GCAG----CAG----------CAA---CAGCA------------GCTG---ATCAACAACGGAG-----------------------G-----------------CGTCTCC-----GC----------------------------CG--------------------GCACACCCACGC-------TGC-TCA----TCGGCAA-----	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCTCCGAGC-------TG--C-----------------CCA-------------CCAGCGAG--TG---------------------TG--AACTGGGCATGGGACT-G-----------------------------------ACC------------------ACCAGAAAGATCC---------------------AGC---AGCAGCAGCAGCAA---------CA------------ACAG------------------------------CAGCAGCAGCAGG--TCCAGCAGC------------------A---ACAA-----------------CAG---CAG---CAGCAGGT---GC-----------AG------------CCTGTCCA---GCTG-GCGCAGCAGC----------------------------AA-CA---------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACGAGCGCT--ACGATGA--CGAGGAGGAGG----AG-CTG------------------------------------------------CCCGCCGCG-----CCAA-GGCCACGCAT--------------------------------------------------C--------C---------------------AGCATCAGCAGCAGCAGCAC---------CA------------CCAGCAGC------------------------------AGCAACACC--ACCAGCAGC------------------A---ACAG-----------------CAA---CAGCCCCAGCAGC-----------------AG------------------C----------------ATCGCC---------AGGTGGTGGC-CTACCA-------GCAGCCA---CAG-CA--------------------GCAGC-------CCCAAGTGAG-GGTA----CAATAC-----	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCCAGGTGG--GCGGGGT--C-----------------ATG-------------------------------------------------CC-CCAGGCGCAGACC--A--------------------------ACGG----T-------CAGTTGGGGTGC-CCCAGC-----AGC------------A------------G------------CAA---------CA------------GCAGCAGCAGCAGC------------------------AACAGC-----CCACGCAGAACCAGCAGCAG---------GTG-----------------------ACG------CAACAGGTGACA--------------------------CATCCGCAGCAGCA----GC---AGC------------------------------------------------------------------------------------AACAGGTGAC-GCAACAG---GTGA-----	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGCAATAGC--GGTAA-C-----------------------------------------------------GTTTTAGCGCCAACAATTTCCGCCACAGATA-----------CG---TTGCA----------------------------------------T--CATC-----ATC------------A------------C------------CAC---------GA---------------ACTGCAGCAACAA---CAACAGCAAC---AACAACAGCAGCAGC--AGCAGCAAC------------------A---ACAT-----------------CAG---CAGCC------------GCAGCCGCTGGGCAATGTGG-----------------------GCGCCGCCGC------------------------------------------------------------GAATATTGTGCGGCGCAATA------------TC-GCTGCAG---GTAA-----	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCCAGGAGG--CGGACGA--C-----------------CTG-------------------------------------------------CCACCCAGTGTGGGCGT-G---GTCCAC-TACG---------------------CCT------C------------CGGC-----CAC------------------------AC------------CCA---------CG------------GC--------------------------------CAGCAGATGCA--GC-----------------------------------------------------------------------------------------------CAGCTGGATTCC-------------GCGGTC-------------------------GC---AG-CAAGAC-----------------------------------------------GGTGGGCGAT-GTTACAG---GTGA-----	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CAAGAC-----------------------------------------------GGTGGGCGAT-GTTACA.............	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................CCAGTGTGGGCGT-G---GTCC.................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GG--CGGACGA--C-----------------CTG-------------------------------------------------CCACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................TC-------------------------GC---AG-CAAGAC-----------------------------------------------GGTGGGCGAT-GTTACAG---.........	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................G-------------------------------------------------CCACCCAGTGTGGGCGT-.........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAC-----------------------------------------------GGTGGGCGAT-GTTACA.............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................C-------------GCGGTC-------------------------GC---AG-CAAGAC-----------------------------------------------GGTGGGCG......................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droSim2

GCCAGCGGAGGC---GGA--GCTGGT---GCTGGGGGC-GTGGCA---GGCGCCTCAACAG-----------------------------CAGCGGCACTTA---------CAC-----T---------------------------------C------------CAGC-----AAC------------------------AT------------CAG---------CA------------TCAGCAGCAGCAACAA------------------CAGCAGCAGCA--AG---------CGCAACAGCAGCATCAGCATCAGCAC-----------------------------CAGCATC-----------------------------------AGCA---GCAG-GCGCAACAGC----------------------------AG-CAATTG-----------------------------------------------GCC----TACCAGCA---CCAGCAA-----	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................................................................................................................................................................................................................................................CAGCAGCATCAGCATCAGCAC-----------------------------..................................................................................................................................................................................	21	3	1.00	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
.................................................GCGCCTCAACAG-----------------------------CAGCGGCACTTA---------CAC-----T---------------------------------C------------...............................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGGCACTTA---------CAC-----T---------------------------------C------------CAGC-----AAC------------------------...........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................CAC-----------------------------CAGCATC-----------------------------------AGCA---GCAG-............................................................................................................................	18	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................C-----AAC------------------------AT------------CAG---------CA------------TCAGCAGC...........................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................AACAGCAGCATCAGCA......................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................AA------------------CAGCAGCAGCA--AG---------.........................................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AGCAGCAACAA------------------CAGCAGCAGCA--....................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................GCAACAA------------------CAGCAGCAGC.......................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GACAGGAGC--GACAGGA--AC-----------------AA--------------------------CTG-----------------C--TGGGGCA-----------GCTGGAGCAA-C--A---------------------GGA---------------------A--------C------------CACAGGGGCA---G------------CTA---------CG------------GCAGCCGGAGCAAC------------------------AGGAGCAGC--TGGAGC---TGGAGCAGCTG--------------------------------------GAGCT------------GGAGCCGC-----------------------TGGA---CCTG-GAGCAGCTGG------AACAACATTGGCCGGA-GC---AG-CA---G-------------------------------------------------CTGGTGAT-ACCGCAG---GGAAAACCG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

ACGAGGAGG--AGGACGA--AGAGGA------------------------------------------------------------------GGAG---------G----AGGAGCAG-G--A---------------------TGTGTCG--------------------------------------------------------------CAGCAACAACAGCAGCA------------GCAGCAGCAACAGCA---------------------GCAACAACTGG--CGG------CGGAGCAGCAGCAAC-------------------------GTG---CTG------CAGCAGC-----------------------------GGCAGCT------GTAG-TTGCAGCGGC-----------------------------------AG-------------------------TTAGTGCG-------------C-------TGC-ACAACG----GCAA--C--	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
ACGAGGAGG--AGGACGA--AGAGGA------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
.CGAGGAGG--AGGACGA--AGAGGA------------------------------------------------------------------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0
....................AGAGGA------------------------------------------------------------------GGAG---------G----AGGAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................AACAACAGCAGCA------------GCAGCA.............................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................AGCAGCA------------GCAGCAGCAACAGCA---------------------GCAAC..........................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................................................................GCAACAACAGCAGCA------------GCAGCAGC...........................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GCCAGCGGG--AACAGGA--GCAGCA------------------------------------------------------------------GGAGAACATGGTCAA-GATCAAGCAG-C--A---------------------CGC------A------------CGCC-----AGC---------------------------AGCAGCAGCAGCAG---------CA------------ACAGCAGC------------------------------ATCACCAGC--AGCAGCAGC------------------A---ACAC-----------------CAC---CAGGCCCAGCAGC-----------------AG------------------C----------------AGC------------GATTCCTGGG-CCACCA-------GCAGGC-----------------------------------------------------GCT----GTCGCCG-----	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................................................................................................................A------------ACAGCAGC------------------------------ATCACCAGC--A.................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................CAGC------------------------------ATCACCAGC--AGCAGCAGC------------------.......................................................................................................................................................................................................................	22	8	0.13	1	0	0	0	0	1	0	0
......................................................................................................................................................................CGCC-----AGC---------------------------AGCAGCAGCAGCAG---------CA------------...................................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................................GCAGCAG---------CA------------ACAGCAGC------------------------------ATC..........................................................................................................................................................................................................................................................	20	15	0.07	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................AGC------------------------------ATCACCAGC--AGCAGCAGG------------------.......................................................................................................................................................................................................................	21	17	0.06	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................ATCACCAGC--AGCAGCAGC------------------.......................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0

dmo_2419

scaffold_6680:9135167-9135247 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-23.1	-22.4