dmo_2378

Name	Class	Family	Strand
TART_DV	LINE	Jockey	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GCAAGCAGCACAAAGAGCAAAAGGCTCAAAAAGGCAGCGATAAACAAAAGGTAAACAATGTTATTTTTTTGCTGTGCTGATATTAACCTTGATGAGTTTGTCTTTGTAGCCAGTTACAGCTGATGTTGAGGAAAAGCCAATTAAACCAGCAACAACAGCAGCAGTGGTAACAGCAGCATCAACACCAATTGCAACAGCAACCAAAGCAACAGTAACAACATCCAAAGCGATAACGACAACAGCCAAAACAC ****************************************************************..(((((((((((.........(((((..((((.((((((....((((....))))....)))))).))))..)))))..))))....)))))))....************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	V041 embryo	V056 head	M060 embryo	V049 head
...............................................................................................................ACTTAAAGCTGATGTTGAAGA.......................................................................................................................	21	3	10	7.50	75	48	27	0	0	0	0
.................................................................................................................TTAAAGCTGATGTTGAAGA.......................................................................................................................	19	2	12	7.25	87	29	55	0	2	0	1
..................................................................TTTTGCTGTGCTGATATTAACCTTGA...............................................................................................................................................................	26	0	1	1.00	1	0	0	1	0	0	0
........................................................................................................AAAAGCCAGTTACAGCTGATGTTGAGG........................................................................................................................	27	3	1	1.00	1	1	0	0	0	0	0
...................................................................................................................ACAGCTGATCTTGAGGAGA.....................................................................................................................	19	2	4	0.50	2	0	1	0	0	0	1
.................................................................................................................ATACAGCTGATCTTGAGGAA......................................................................................................................	20	2	3	0.33	1	0	0	0	0	1	0
..................................................................................................................TACAGCTGATCTTGAGGA.......................................................................................................................	18	1	3	0.33	1	0	0	0	1	0	0
...............................................................................................................ACTTAAAGCTGATGTTGA..........................................................................................................................	18	2	20	0.30	6	5	0	0	1	0	0
...................................................................................................................................................AGCAACAACAGCAGCAGT......................................................................................	18	0	19	0.05	1	1	0	0	0	0	0
..............................................................................................................AAGTTAAAGCTGATGTTGA..........................................................................................................................	19	2	19	0.05	1	1	0	0	0	0	0

CGTTCGTCGTGTTTCTCGTTTTCCGAGTTTTTCCGTCGCTATTTGTTTTCCATTTGTTACAATAAAAAAACGACACGACTATAATTGGAACTACTCAAACAGAAACATCGGTCAATGTCGACTACAACTCCTTTTCGGTTAATTTGGTCGTTGTTGTCGTCGTCACCATTGTCGTCGTAGTTGTGGTTAACGTTGTCGTTGGTTTCGTTGTCATTGTTGTAGGTTTCGCTATTGCTGTTGTCGGTTTTGTG ************************************************************************************..(((((((((((.........(((((..((((.((((((....((((....))))....)))))).))))..)))))..))))....)))))))....****************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo
............................................................................................................................................................................................................TCGTTGTCACTGTTGTAGGGTTCC.......................	24	3	2	0.50	1	0	1
.................................................................................................................AATTTCGACTACAACTTCT.......................................................................................................................	19	2	12	0.42	5	5	0
.............................................................................................................................................................................................................CGTTGTCACTGTTGTAGGGTTCC.......................	23	3	3	0.33	1	0	1
.................................................................................................................AATTTCGACTACAACTCCTC......................................................................................................................	20	2	3	0.33	1	1	0
...............................................................................................................TGAATTTCGACTACAACTTCT.......................................................................................................................	21	3	10	0.20	2	2	0
.........................................................................................................................................................................TGTCGTCACAGTTTTGGTTAA.............................................................	21	3	6	0.17	1	1	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6680:6392453-6392703 -	dmo_2378	GCAA--GCAGC-ACAAAGAGCAA--A----------------AGGCTCAAAAAGGCAGCGATAAACAAAAGG-T-AAACA-------ATGTTA------------------------TTTTTTTGCTGTGCTGATATTAACCTTGATG---------------------------------------------------------------------------------------AGTTTGTCTTTGTAGCCAGTT----------ACAGCTGATGTTGAGGAAAAGCCAATTAAA--------------------------------------------------------------------------------------------CC--AGCAACAACAGC---------------------------------AG------------CAGTGG---TAACAGCAG---CAT------CAA------CACCAATTGCAACAGCAACC------A---AAGCA------A---CAGTA---ACAA---------CATC------CAAAGCGAT--AAC---------------------------------GACAAC------------------AGCCAAAACAC
droVir3	scaffold_13049:5423657-5423889 +		ACCA--ACAGC-ATCAACAACAA--C----------------AGCAAC--AACAGCAGCAGCA-----------GCAACA-------ACAACAACAGC---AA--------------T-TGGGCT---------------------------------------------------------------------G-----------------CCTGCTGCAGC----C--GTTGACTTTGGCATTGTCC------CCA----CA--GCAACCGCAGCC------------------------------------------------------------------------GCTACAATTGCATAGCCAAATGA----------------------------------------------------------------TG---CAGCAACAACAGCAT---CAACAG---------C------AGCACCAGCAACAA---CAACAACAGCAGCAGCAGCAACA---------------------------------ACAGC------TACAGCTAC--ACC---------------------------------AGCAGC------------------AGCAGCATCAG
droGri2	scaffold_15203:10146981-10147189 -		CAAA--GTGTAAAGCAAAAAAAA--A----------------AAAGAAAAAAAGAAAAAAAC---------------------------------------------------------TATTTT------TT--------------------------------------------------------------------------------TTTTCGTGGC----T-----------GTTTTGAATG------CCT----CA--ACAAATGCCG-CTAGAAACGGCAGAGCAG---------------------------------------------------------------------------------------------------------CCACCACAACAACACCAGCAGCAG---CAGCAGCAGC------------------AGCAGCAGCAG---------------------------------CAGCA---ACA------GCGATAACA-------ACC--A-----AC-----------------------A---A--C---------CAACAACAAC------------------------AACC---AAA--CAACAACTCAAAAGAAT
droWil2	scf2_1100000004511:1418422-1418665 +		GTAT--GCAAA-ATAGAAAGAAA--A-AG-AAACACAACAAGAGCGAGAGAAAATGTTATACA-----------AAACAA-------TTT--TGTTGC---GC----------------------------------------------------------------------------------------------------------------CCTGGCTTAATTGAAATTGTAACTGTCATTAAT-------TAC----TG--TCTGGAAATTTGAATTAACAACAAAACAAA--------------------------------------------------------------------------------------------CAAA-----------------G---------------------------AG---CAATAACAACAGCAA---CAACAT------CAT---------CATCATCGACAA---CAACAAAAACA------A---AAACA-------ACG--GCA---ACAG---------CAAC------AGCAGCAAC--AAC---------------------------------AATAAG------------------CACAAGAAGAA
dp5	4_group3:6219437-6219690 +		GCAA--GCAGC-AAAAAAAAAAA-------------------CGCAGCCAAAAAACGT---TCACAAAAAGG-T-----G-------ATAATG------------------------ATTATTTCCAAGGATCTTTTCATATTTGGCGAACAAATTTTTGCAACAATTATACCAGA--------AGGTGGAGCC-----------------------------------------------------------------------------------------GCAGCA-----------------------------------------------------------------------------------------------------GTGGCAAC-------ACAGC---------------------------AG---CAGCAGGAACAGCAA---CAAAAT---------C------TGCAACAGCAGCAG---CAACAAAAGCAGCAGCAGCAGCAGCA-------A-----------------------CATCTGCAACACC---A--G------------CAACAAC------------------------AGCCGGCAATTAT-----AACTACAACAA
droPer2	scaffold_1:7712637-7712879 +		GCAA--GCAGC-AAAAAAAAAAA--A----------------CGCAGCCAAAAAACGT---TCACAAAAAGG-T-----G-------ATAATG------------------------ATTATTTCCAAGGATCTTTTCATATTTGGCGAACAAATTTTTGCAACAATTATACCAGA--------AGGTGGAGCC-----------------------------------------------------------------------------------------GCAGCA-----------------------------------------------------------------------------------------------------GTGGCAAC-------ACAGC---------------------------AG---CAGCAGGAACAGCAA---CAAAAT---------C------TGCAACAGCAGCAG---CAACAAAAGCA------G------------------CAGCA---GCAA---------CATCTGCAACACC---A--G------------CAACAAC------------------------AGCCGGCAATT-----------ATAAGTA
droAna3	scaffold_13340:10874501-10874742 -		AGCA--ACTGC-AACAGCAGCAA--A----------------TGCGTAAGAAAGACAAAGATA-----------GATCCA-------ACATTAGTTGC---TTGGGC---------------------GTCGGTTCT---------------------------------------AGTAGTTA----------C--------------------------------AATGCAGATGCTGGTAGCGGTA------GTC----AG--GCAAATAGTGTCAAGCATCAGCAGAATAAG--------------------------------------------------------------------------------------------CAAAAACAACACCAAATGCAACAGCAG---------------------------------------------------------CAGC------AACAAAAACATCAA---CA------ACA------ACAACAACA-------ACC--ACA---ACAA---------CATC------AGCAGCAAG--AAC---------------------------------AAAAAG------------------TGCAAAGGTTG
droBip1	scf7180000396740:151862-152099 -		ACAA--CAAAT-AAGAAGAAAAAGAG-----------------AAATAAAAAAGAGAAGAAAA-T------A--TTTCAA-------AAGTCAA---CCGAAGCAAATGTAA-----TTTTTTTTTTATATTA---------------------------------------------------AAATGAAACT-----------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------CAACAACAACAACTACTACAGCAGCAA------------------------------CAACTACAGAAG---CAACAA---CACCAGC------AGCTGAAGCAGCAA---CACCAACAACA------GAAACAACA-------A-----------------------CATCAGCAACACC---A--A------------CAACAAC------------------------AACAACCAAATGCAACAACCAACCAAGGC
droKik1	scf7180000302639:2591238-2591465 +		GCC----CAAC-AGCAACAACAA--A----------------TGCGTAAGAAAGACAAAGATA-----------GATCCA-------ATATTAGTTGC---ATTG---------------------------------------------------------------------------GTAG----------T--------------------------------CAAGTTGGTGCTGGTAGCGGTA------GCAGTACAAATACAAATAGTGTCAAGCATCAGCAGAATAAA--------------------------------------------------------------------------------------------CAAAAGCAACAACAACTACAACAACAA---------------------------------------------------------CAAC------AGCAAAAACAACAA---AA------TCA------G---CAGCAAAATCAG---C------AGC---------AAAATC------AAC---A--GCAAC---------------------------------AACAAG------------------AGCAACCGCAA
droFic1	scf7180000454096:1059295-1059551 +		GCA---GCAGC-AGCAACAGCAA--A----------------TGCGTAAGAAAGACAAAGATA-----------GATCGA-------ATAGTAGTTGC---ATTGGC---------------------------------------------------------------------AGTAGTAG----------T--------------------------------CATGTTGGTGCTGGTAGCGGTA------GTC----AA--GCAAATAGTGTCAAGCATCTGCAGAATAAG--------------------------------------------------------------------------------------------CAAAAGCAACAACAACTACAACAACAG---CAAAAGCAACAGCAACTGC------------------AACAGC------------------------AAAAGCAACAA---CAACA------------A---CAGCA-------ACC--GCAACAGC---TACAGCAA------------C---A--G------------CAACAGCATCACGAT--GTT---------GC------------------AGCAGCAACAT
droEle1	scf7180000491044:890255-890510 +		GCA---GCAGC-AACAGCAACAA--CAGG-------------CGCA--ACAGCAACAGCAGCA-----------GCAACA-------ACAGCAGCAAC---AA---C------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGGCCGCTTT--------GGTGAGGCGACCCAGGAAACGTTCCTGGTCGCATCGTCCTTATTACGAGCAATTGCGAGAACGACGCGATGCAGAGGAGA-------------------------------------------------------------AGCAGCAGCAACAGCAGCAG---CAG---------CACCAGCAACAT------CATCAG---CAACAGCAGCA------G---CAGCAACATCAC---C------AGC---------AGCAGC------AAC---AGC--AAC---------------------------------ATCAGC------------------AGCAGCAACAA
droRho1	scf7180000762682:3796-4013 +		AACA--GCAGC-AAAAACAGCAG--CAGC--TACAAA-----AATGCAGGAACAACAACAGCA-----------GCAACA-------AAAATAGCAGC---AACAAC---------------------------------------------------------------------AACCGAAA----------TTACGTTGGAAATTAGAA-ATT----------------------TGG------------------------------------------------------------------------------------------------------------------------------------------------------AAGCAACAAAAACTGCATCAGCAA------------CAACAAC---AG------------CAGCAA---CAAAAATAG---------CAGCGA------CAACAA---CAGCAGCAACA------A---AAGCA------G---CAGCA---ACAA---------AAGC------AGCAGCAA-----------------------------------------CAAC------------------AACAGCAGC--
droBia1	scf7180000302421:476475-476741 +		ACAA--GCAGC-AGCAGCAGCAG--A----------------AGAACGAGGAGTCCAAAGT----------GTTTATCGACATACGGAATTCA---GC---ACCAGACGTGATTATCATGACGTCCCATTGACA---------------------------------------------------------------------------------------------------------TTTAAGGATG------GCC----CG--CCAATCAGCA----ACAACAACGGTGCAGA-------------------------------------------------------------------------------------------------G------------CAGG---------------------------AGCAA---CAGCAGGAGCAG---CAGCAA------CACC------AGCAACAGCAGCAA---CA------CCA------GCATCAGCA-------GCA--TCA---GCAGCAACAGCAA------------C---A--GCGGC------------GGAAAGAGGATGCGTTGCAGCAAC------T---GGA--CATC--GGCCAGCATAT
droTak1	scf7180000411049:3854-4099 -		GGAA--ACTAA-AAAAAGATTAAGACGACAAAGCACC------ACAAGGTAAATACCA-----------------------------ATATCAATAAC---AA---TCACAAATTTCTTTTTTTTCC------------------------------------------------------------------------------------------TTTTTC---------GATTTTTGTTAACTTTT------GTT----AT--GTTATTT---------AATTTCAGA--------------------------------------------------------------------------------------------------------AACAACAACAACAGAAACAA------------------------------CAGCAACCGAAG---CAACAT---CATCATC------AACAGAAGCAACAT---CATCATCAACA------G---AAGCA------T---CATCA---TCAT---------CAAC------AGAAGCAAC--ATC---------------------------------ATCATC------------------AACAGAAGCAA
droEug1	scf7180000408162:5745-5971 +		AGCG--GCAAC-AAAAACAGCAA--C----------------AGC-----CAAAACAACGGCA-----------GCGACA-------ACAGCAGCAGC---GTCAAC---------------------------------------------------------------------AGCGGCAG---------------------------------------------------CGACGACAGCAACA------GCC----AC--GACAACGGCAGC-------T----------------------------------------------------------------ACAACAGCAGCAGCGTCAACAGCGGCAGCGACGACAGC-------------------------------------------------GG------------CAGCGA---CGACAGCGG---------CAGCGA------CGACAG---CGGCAGCGACG------A---CAGCG------G---CAGCG---ACGA---------CAGC------GGCAGCGAC--GAC---------------------------------AGCGGC------------------GGCGACGACAG
dm3	chr3R:3686988-3687219 -		GCA---GCAAC-AGCAACAGCAA--A----------------TGCGTAAGAAAGACAAAGATA-----------GATCGA-------ATAGTAGTTGC---ATTGGC---------------------------------------------------------------------AGTGGTAG----------T--------------------------------CATGTTGGTGCTGGTAGCGGTA------GTC----AA--GCAAATAGTGTCAAGCATCTGCAGAATAAG--------------------------------------------------------------------------------------------CAAAAGCAACAACAACTACAGCAGCAA---------------------------------------------------------CAGC------AACAAAAGCAACAA---CAACA------------A---CAGCA-------ACC--GCAACAGC---AACAGCAAAAGC------------AGC--AGC---------------------------------AAAAAC------------------AGCAGCAGCAA
droSim2	3r:3574841-3575076 -		GCA---GCAAC-AGCAACAGCAA--A----------------TGCGTAAGAAAGACAAAGATA-----------GATCGA-------ATAGTAGTTGC---ATTGGC---------------------------------------------------------------------AGTGGTAG----------T--------------------------------CATGTTGGTGCTGGTAGCGGTA------GTC----AA--GCAAATAGTGTCAAGCATCTGCAGAATAAG--------------------------------------------------------------------------------------------CAAAAGCAACAACAACTACAGCAGCAA---------------------------------------------------------CAGC------AACAAAAGCAACAA---CAACA------------A---CAGCA-------ACC--GCAACAGC---A------AAAGC------AGC---A--G---CAAAAACAGCAGCAGCAACTCGAT-----------------------------------------GTTG
droSec2	scaffold_6:3757036-3757293 -		AGCA--GCAAC-AGCAACAGCAA--A----------------TGCGTAAGAAAGACAAAGATA-----------GATCGA-------ATAGTAGTTGC---ATTGGC---------------------------------------------------------------------AGTGGTAG----------T--------------------------------CATGTTGGTGCTGGTAGCGGTA------GTC----AA--GCAAATAGTGTCAAGCATCTGCAGAATAAG--------------------------------------------------------------------------------------------CAAAAGCAACAACAACTACAGCAGCAA---------------------------------------------------------CAGC------AACAAAAGCAACAA---CAACA------------A---CAGCA-------ACC--GCAACAGC---AA------AAGC------AGC---A--G---CAAAAACAGCAGCAGCAACTCGAT--GTTGCAGCAGCAGC------------------AGCAACAGCAG
droYak3	3R:6597597-6597859 +		GCATCAGCAAC-AGCAACAGCAA--A----------------TGCGTAAGAAAGACAAAGATA-----------GATCGA-------ATAGTAGTTGC---ATTGGC---------------------------------------------------------------------AGTGGTAG----------T--------------------------------CATGTTGGTGCTGGTAGCGGTA------GTC----AA--GCAAATAGTGTCAAGCATCTGCAGAATAAG--------------------------------------------------------------------------------------------CAAAAGCAACAACAACTACAGCAGCAA------------CAGCAACAGC------------------AACAACAAAAGCAA------------CAA------CACCAAG---CGCA------------A---CAGCA-------ACC--GCAACAGC---AAAAGCAAA---------------A--G------------CAGCAGCATCTCGAT--GTTGC---AGCAGC------------------AGCAACAGCAG
droEre2	scaffold_4770:3925967-3926215 -		AGCA--AC----AGCAACAGCAA--A----------------TGCGTAAGAAAGACAAAGATA-----------GATCGA-------ATAGTAGTTGC---ATTGGC---------------------------------------------------------------------AGTGGTAG----------T--------------------------------CATGTTGGTGCTGGTAGCGGTA------GTC----AA--GCAAATAGTGTCAAGCATCTGCAGAATAAG--------------------------------------------------------------------------------------------CAAAAGCAACAACAACTACAGCAGCAA------------CAGCAACAGC------------------AGCAACAAAAG---------------------------------CAACA------------A---CAGCA-------ACC--GCCACAGC---AACAGCAAA---------------A--G------------CAGCAGCAACTCGAT--GTTGCAGCAGCAAC------------------AGCAGCAGCAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GCAA--GCAGC-ACAAAGAGCAA--A----------------AGGCTCAAAAAGGCAGCGATAAACAAAAGG-T-AAACA-------ATGTTA------------------------TTTTTTTGCTGTGCTGATATTAACCTTGATG---------------------------------------------------------------------------------------AGTTTGTCTTTGTAGCCAGTT----------ACAGCTGATGTTGAGGAAAAGCCAATTAAA--------------------------------------------------------------------------------------------CC--AGCAACAACAGC---------------------------------AG------------CAGTGG---TAACAGCAG---CAT------CAA------CACCAATTGCAACAGCAACC------A---AAGCA------A---CAGTA---ACAA---------CATC------CAAAGCGAT--AAC---------------------------------GACAAC------------------AGCCAAAACAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................TTTTGCTGTGCTGATATTAACCTTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGC---------------------------------AG------------CAGT.................................................................................................................................................................................................	18	19	0.05	1	1	0	0	0	0	0

droVir3

ACCA--ACAGC-ATCAACAACAA--C----------------AGCAAC--AACAGCAGCAGCA-----------GCAACA-------ACAACAACAGC---AA--------------T-TGGGCT---------------------------------------------------------------------G-----------------CCTGCTGCAGC----C--GTTGACTTTGGCATTGTCC------CCA----CA--GCAACCGCAGCC------------------------------------------------------------------------GCTACAATTGCATAGCCAAATGA----------------------------------------------------------------TG---CAGCAACAACAGCAT---CAACAG---------C------AGCACCAGCAACAA---CAACAACAGCAGCAGCAGCAACA---------------------------------ACAGC------TACAGCTAC--ACC---------------------------------AGCAGC------------------AGCAGCATCAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................................................................................................................................................CCA----CA--GCAACCGCAGCC------------------------------------------------------------------------GCTA......................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................C------------------------------------------------------------------------GCTACAATTGCATAGCCAAATGA----------------------------------------------------------------T..................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CCAAATGA----------------------------------------------------------------TG---CAGCAACAACAG..................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................ATAGCCAAATGA----------------------------------------------------------------TG---CAGCAACAACAGCAT---............................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---CAACAACAGCAGCAGCAGCA.................................................................................................................................	21	20	0.25	5	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCAACAA---CAACAACAGCAGC........................................................................................................................................	24	8	0.25	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCAACAA---CAACAACAGCAGCAGCA....................................................................................................................................	28	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TCAACAACAA--C----------------AGCAAC--AACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAGCAACA---------------------------------ACAGC------..................................................................................	28	20	0.15	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA---CAACAACAGCAGCAGC.....................................................................................................................................	22	20	0.15	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............AACAACAA--C----------------AGCAAC--AACAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AACAGCAGCAGCA-----------GCAACA-------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................C--AACAGCAGCAGCA-----------GCAACA-------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACC---------------------------------AGCAGC------------------AGCAGCATC..	18	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA---CAACAACAGCAGCAGC.....................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------C------AGCACCAGCAACAA---CAAC.................................................................................................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................A--C----------------AGCAAC--AACAGCAGCAGCA-----------GCAACA-------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAT---CAACAG---------C------AGCA..................................................................................................................................................................	19	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AA--C----------------AGCAAC--AACAGCAGCAGCA-----------GCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	16	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GCAGCAGCA-----------GCAACA-------ACAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAACAACAGCAGCAGCAGC..................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CAAC--AACAGCAGCAGCA-----------GCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACAA--C----------------AGCAAC--AACAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ATCAACAACAA--C----------------AGCAAC--A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA---CAACAACAGCAGCA.......................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................CAGCAGCA-----------GCAACA-------ACAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................ACAGCAGCAGCA-----------GCAACA-------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................ACAGCAGCAGCA-----------GCAACA-------ACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAA---CAACAACAGCAGC........................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............CAACAACAA--C----------------AGCAAC--AACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAA--C----------------AGCAAC--AACAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................C--AACAGCAGCAGCA-----------GCAACA-------ACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAGCAAC...............................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CAACAACAA--C----------------AGCAAC--AACAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCAAC--AACAGCAGCAGCA-----------GCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................CAGCA-----------GCAACA-------ACAACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAGCAACA---------------------------------ACA..........................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GCAGCAGCA-----------GCAACA-------ACAACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAA--C----------------AGCAAC--AACAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA---CAACAACAGCAGCAGCA....................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA---CAACAACAGCAGCAGCAGC..................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AACAGCAGCAGCA-----------GCAACA-------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACA---------------------------------ACAGC------..................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................GCA-----------GCAACA-------ACAACAACAGC---A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACA---------------------------------ACAGC------..................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................CA-----------GCAACA-------ACAACAACAGC---A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA---CAACAACAGCAGCAG......................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CAACAACAA--C----------------AGCAAC--AACAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................CAGCAGCAGCA-----------GCAACA-------ACAACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---CAACAACAGCAGCAGCAGCAACA---------------------------------ACA..........................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAA--C----------------AGCAAC--AACAGCAGCAGCA-----------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACA---------------------------------.............................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAGCAACA---------------------------------AC...........................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................AGCAGCA-----------GCAACA-------ACAACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

CAAA--GTGTAAAGCAAAAAAAA--A----------------AAAGAAAAAAAGAAAAAAAC---------------------------------------------------------TATTTT------TT--------------------------------------------------------------------------------TTTTCGTGGC----T-----------GTTTTGAATG------CCT----CA--ACAAATGCCG-CTAGAAACGGCAGAGCAG---------------------------------------------------------------------------------------------------------CCACCACAACAACACCAGCAGCAG---CAGCAGCAGC------------------AGCAGCAGCAG---------------------------------CAGCA---ACA------GCGATAACA-------ACC--A-----AC-----------------------A---A--C---------CAACAACAAC------------------------AACC---AAA--CAACAACTCAAAAGAAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

GTAT--GCAAA-ATAGAAAGAAA--A-AG-AAACACAACAAGAGCGAGAGAAAATGTTATACA-----------AAACAA-------TTT--TGTTGC---GC----------------------------------------------------------------------------------------------------------------CCTGGCTTAATTGAAATTGTAACTGTCATTAAT-------TAC----TG--TCTGGAAATTTGAATTAACAACAAAACAAA--------------------------------------------------------------------------------------------CAAA-----------------G---------------------------AG---CAATAACAACAGCAA---CAACAT------CAT---------CATCATCGACAA---CAACAAAAACA------A---AAACA-------ACG--GCA---ACAG---------CAAC------AGCAGCAAC--AAC---------------------------------AATAAG------------------CACAAGAAGAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAA---CAACAT------CAT---------CATCA...............................................................................................................................................................	25	4	0.25	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACAACAGCAA---CAACAT------CA..............................................................................................................................................................................	22	6	0.17	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG--GCA---ACAG---------CAAC------AGCAGCA...........................................................................	20	14	0.07	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ACAG---------CAAC------AGCAGCAAC--.......................................................................	18	20	0.05	1	0	0	0	1	0

dp5

GCAA--GCAGC-AAAAAAAAAAA-------------------CGCAGCCAAAAAACGT---TCACAAAAAGG-T-----G-------ATAATG------------------------ATTATTTCCAAGGATCTTTTCATATTTGGCGAACAAATTTTTGCAACAATTATACCAGA--------AGGTGGAGCC-----------------------------------------------------------------------------------------GCAGCA-----------------------------------------------------------------------------------------------------GTGGCAAC-------ACAGC---------------------------AG---CAGCAGGAACAGCAA---CAAAAT---------C------TGCAACAGCAGCAG---CAACAAAAGCAGCAGCAGCAGCAGCA-------A-----------------------CATCTGCAACACC---A--G------------CAACAAC------------------------AGCCGGCAATTAT-----AACTACAACAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA---CAAAAT---------C------TGCAACAGC.............................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TGGCAAC-------ACAGC---------------------------AG---CAGCAGGAA.....................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................ACAGC---------------------------AG---CAGCAGGAACAGCA................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------AG---CAGCAGGAACAGCAA---CA..........................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAAAGCAGCAGCAGCAGCAG.............................................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCA-------A-----------------------CATC........................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGCAGCAGCAGCAGC...............................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

GCAA--GCAGC-AAAAAAAAAAA--A----------------CGCAGCCAAAAAACGT---TCACAAAAAGG-T-----G-------ATAATG------------------------ATTATTTCCAAGGATCTTTTCATATTTGGCGAACAAATTTTTGCAACAATTATACCAGA--------AGGTGGAGCC-----------------------------------------------------------------------------------------GCAGCA-----------------------------------------------------------------------------------------------------GTGGCAAC-------ACAGC---------------------------AG---CAGCAGGAACAGCAA---CAAAAT---------C------TGCAACAGCAGCAG---CAACAAAAGCA------G------------------CAGCA---GCAA---------CATCTGCAACACC---A--G------------CAACAAC------------------------AGCCGGCAATT-----------ATAAGTA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................AATG------------------------ATTATTTCCAAGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	3	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAAGCA------G------------------CAGCA---GCAA---------CA..........................................................................................	21	5	2.00	10	0	9	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCA------G------------------CAGCA---GCAA---------CA..........................................................................................	18	20	0.60	12	0	12	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCA------G------------------CAGCA---GCAA---------CA..........................................................................................	19	15	0.40	6	0	5	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAAGCA------G------------------CAGCA---GCAA---------C...........................................................................................	21	4	0.25	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAAGCA------G------------------CAGCA---GCA......................................................................................................	18	19	0.11	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGCA------G------------------CAGCA---GCAA---------CA..........................................................................................	20	11	0.09	1	0	1	0	0	0	0

droAna3

AGCA--ACTGC-AACAGCAGCAA--A----------------TGCGTAAGAAAGACAAAGATA-----------GATCCA-------ACATTAGTTGC---TTGGGC---------------------GTCGGTTCT---------------------------------------AGTAGTTA----------C--------------------------------AATGCAGATGCTGGTAGCGGTA------GTC----AG--GCAAATAGTGTCAAGCATCAGCAGAATAAG--------------------------------------------------------------------------------------------CAAAAACAACACCAAATGCAACAGCAG---------------------------------------------------------CAGC------AACAAAAACATCAA---CA------ACA------ACAACAACA-------ACC--ACA---ACAA---------CATC------AGCAGCAAG--AAC---------------------------------AAAAAG------------------TGCAAAGGTTG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGCAACAGCAG---------------------------------------------------------CAGC------......................................................................................................................................................................	19	5	0.20	1	0	1	0	0	0	0

droBip1

ACAA--CAAAT-AAGAAGAAAAAGAG-----------------AAATAAAAAAGAGAAGAAAA-T------A--TTTCAA-------AAGTCAA---CCGAAGCAAATGTAA-----TTTTTTTTTTATATTA---------------------------------------------------AAATGAAACT-----------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------CAACAACAACAACTACTACAGCAGCAA------------------------------CAACTACAGAAG---CAACAA---CACCAGC------AGCTGAAGCAGCAA---CACCAACAACA------GAAACAACA-------A-----------------------CATCAGCAACACC---A--A------------CAACAAC------------------------AACAACCAAATGCAACAACCAACCAAGGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCC----CAAC-AGCAACAACAA--A----------------TGCGTAAGAAAGACAAAGATA-----------GATCCA-------ATATTAGTTGC---ATTG---------------------------------------------------------------------------GTAG----------T--------------------------------CAAGTTGGTGCTGGTAGCGGTA------GCAGTACAAATACAAATAGTGTCAAGCATCAGCAGAATAAA--------------------------------------------------------------------------------------------CAAAAGCAACAACAACTACAACAACAA---------------------------------------------------------CAAC------AGCAAAAACAACAA---AA------TCA------G---CAGCAAAATCAG---C------AGC---------AAAATC------AAC---A--GCAAC---------------------------------AACAAG------------------AGCAACCGCAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCA---GCAGC-AGCAACAGCAA--A----------------TGCGTAAGAAAGACAAAGATA-----------GATCGA-------ATAGTAGTTGC---ATTGGC---------------------------------------------------------------------AGTAGTAG----------T--------------------------------CATGTTGGTGCTGGTAGCGGTA------GTC----AA--GCAAATAGTGTCAAGCATCTGCAGAATAAG--------------------------------------------------------------------------------------------CAAAAGCAACAACAACTACAACAACAG---CAAAAGCAACAGCAACTGC------------------AACAGC------------------------AAAAGCAACAA---CAACA------------A---CAGCA-------ACC--GCAACAGC---TACAGCAA------------C---A--G------------CAACAGCATCACGAT--GTT---------GC------------------AGCAGCAACAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCA---GCAGC-AACAGCAACAA--CAGG-------------CGCA--ACAGCAACAGCAGCA-----------GCAACA-------ACAGCAGCAAC---AA---C------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGGCCGCTTT--------GGTGAGGCGACCCAGGAAACGTTCCTGGTCGCATCGTCCTTATTACGAGCAATTGCGAGAACGACGCGATGCAGAGGAGA-------------------------------------------------------------AGCAGCAGCAACAGCAGCAG---CAG---------CACCAGCAACAT------CATCAG---CAACAGCAGCA------G---CAGCAACATCAC---C------AGC---------AGCAGC------AAC---AGC--AAC---------------------------------ATCAGC------------------AGCAGCAACAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AACA--GCAGC-AAAAACAGCAG--CAGC--TACAAA-----AATGCAGGAACAACAACAGCA-----------GCAACA-------AAAATAGCAGC---AACAAC---------------------------------------------------------------------AACCGAAA----------TTACGTTGGAAATTAGAA-ATT----------------------TGG------------------------------------------------------------------------------------------------------------------------------------------------------AAGCAACAAAAACTGCATCAGCAA------------CAACAAC---AG------------CAGCAA---CAAAAATAG---------CAGCGA------CAACAA---CAGCAGCAACA------A---AAGCA------G---CAGCA---ACAA---------AAGC------AGCAGCAA-----------------------------------------CAAC------------------AACAGCAGC--	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACAA--GCAGC-AGCAGCAGCAG--A----------------AGAACGAGGAGTCCAAAGT----------GTTTATCGACATACGGAATTCA---GC---ACCAGACGTGATTATCATGACGTCCCATTGACA---------------------------------------------------------------------------------------------------------TTTAAGGATG------GCC----CG--CCAATCAGCA----ACAACAACGGTGCAGA-------------------------------------------------------------------------------------------------G------------CAGG---------------------------AGCAA---CAGCAGGAGCAG---CAGCAA------CACC------AGCAACAGCAGCAA---CA------CCA------GCATCAGCA-------GCA--TCA---GCAGCAACAGCAA------------C---A--GCGGC------------GGAAAGAGGATGCGTTGCAGCAAC------T---GGA--CATC--GGCCAGCATAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGAA--ACTAA-AAAAAGATTAAGACGACAAAGCACC------ACAAGGTAAATACCA-----------------------------ATATCAATAAC---AA---TCACAAATTTCTTTTTTTTCC------------------------------------------------------------------------------------------TTTTTC---------GATTTTTGTTAACTTTT------GTT----AT--GTTATTT---------AATTTCAGA--------------------------------------------------------------------------------------------------------AACAACAACAACAGAAACAA------------------------------CAGCAACCGAAG---CAACAT---CATCATC------AACAGAAGCAACAT---CATCATCAACA------G---AAGCA------T---CATCA---TCAT---------CAAC------AGAAGCAAC--ATC---------------------------------ATCATC------------------AACAGAAGCAA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGCG--GCAAC-AAAAACAGCAA--C----------------AGC-----CAAAACAACGGCA-----------GCGACA-------ACAGCAGCAGC---GTCAAC---------------------------------------------------------------------AGCGGCAG---------------------------------------------------CGACGACAGCAACA------GCC----AC--GACAACGGCAGC-------T----------------------------------------------------------------ACAACAGCAGCAGCGTCAACAGCGGCAGCGACGACAGC-------------------------------------------------GG------------CAGCGA---CGACAGCGG---------CAGCGA------CGACAG---CGGCAGCGACG------A---CAGCG------G---CAGCG---ACGA---------CAGC------GGCAGCGAC--GAC---------------------------------AGCGGC------------------GGCGACGACAG	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCA---GCAAC-AGCAACAGCAA--A----------------TGCGTAAGAAAGACAAAGATA-----------GATCGA-------ATAGTAGTTGC---ATTGGC---------------------------------------------------------------------AGTGGTAG----------T--------------------------------CATGTTGGTGCTGGTAGCGGTA------GTC----AA--GCAAATAGTGTCAAGCATCTGCAGAATAAG--------------------------------------------------------------------------------------------CAAAAGCAACAACAACTACAGCAGCAA---------------------------------------------------------CAGC------AACAAAAGCAACAA---CAACA------------A---CAGCA-------ACC--GCAACAGC---AACAGCAAAAGC------------AGC--AGC---------------------------------AAAAAC------------------AGCAGCAGCAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................................TGGTAG----------T--------------------------------CATGTTGGTGCTGGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TAG----------T--------------------------------CATGTTGGTGCTGGTAGCGGT................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................GATA-----------GATCGA-------ATAGTAGTTGC---AT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................AGCAA--A----------------TGCGTAAGAAAGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............CAACAGCAA--A----------------TGCGTAAGAAAGACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................ATCTGCAGAATAAG--------------------------------------------------------------------------------------------CAC.................................................................................................................................................................................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---AACAGCAAAAGC------------AGC--AGC---------------------------------...................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------AAAAAC------------------AGCAGCAGCAA	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CA---GCAAC-AGCAACAGCAA--A----------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	15	0.27	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAACAA---CAACA------------A---CAGCA-------A...................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------A---CAGCA-------ACC--GCAACAGC---TC..................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGC---AACAGCAAAAG.........................................................................................	19	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GCA---GCAAC-AGCAACAGCAA--A----------------TGCGTAAGAAAGACAAAGATA-----------GATCGA-------ATAGTAGTTGC---ATTGGC---------------------------------------------------------------------AGTGGTAG----------T--------------------------------CATGTTGGTGCTGGTAGCGGTA------GTC----AA--GCAAATAGTGTCAAGCATCTGCAGAATAAG--------------------------------------------------------------------------------------------CAAAAGCAACAACAACTACAGCAGCAA---------------------------------------------------------CAGC------AACAAAAGCAACAA---CAACA------------A---CAGCA-------ACC--GCAACAGC---A------AAAGC------AGC---A--G---CAAAAACAGCAGCAGCAACTCGAT-----------------------------------------GTTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAA---CAACA------------A---CAGCA-------AC..................................................................................................................	20	20	1.00	20	0	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAACAA---CAACA------------A---CAGCA-------....................................................................................................................	20	8	0.75	6	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGCAGCAGCAAC..................................................	16	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAGCAGCAGCAAC..................................................	17	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGCAGCAGCAA...................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAGCAGCAGCAA...................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AGCA--GCAAC-AGCAACAGCAA--A----------------TGCGTAAGAAAGACAAAGATA-----------GATCGA-------ATAGTAGTTGC---ATTGGC---------------------------------------------------------------------AGTGGTAG----------T--------------------------------CATGTTGGTGCTGGTAGCGGTA------GTC----AA--GCAAATAGTGTCAAGCATCTGCAGAATAAG--------------------------------------------------------------------------------------------CAAAAGCAACAACAACTACAGCAGCAA---------------------------------------------------------CAGC------AACAAAAGCAACAA---CAACA------------A---CAGCA-------ACC--GCAACAGC---AA------AAGC------AGC---A--G---CAAAAACAGCAGCAGCAACTCGAT--GTTGCAGCAGCAGC------------------AGCAACAGCAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

GCATCAGCAAC-AGCAACAGCAA--A----------------TGCGTAAGAAAGACAAAGATA-----------GATCGA-------ATAGTAGTTGC---ATTGGC---------------------------------------------------------------------AGTGGTAG----------T--------------------------------CATGTTGGTGCTGGTAGCGGTA------GTC----AA--GCAAATAGTGTCAAGCATCTGCAGAATAAG--------------------------------------------------------------------------------------------CAAAAGCAACAACAACTACAGCAGCAA------------CAGCAACAGC------------------AACAACAAAAGCAA------------CAA------CACCAAG---CGCA------------A---CAGCA-------ACC--GCAACAGC---AAAAGCAAA---------------A--G------------CAGCAGCATCTCGAT--GTTGC---AGCAGC------------------AGCAACAGCAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------------A---CAGCA-------ACC--GCAACAGC---....................................................................................................	20	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AAAAGCAAA---------------A--G------------CAGCAGC.....................................................	20	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------AACAACAAAAGCAA------------.......................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAA------------CAGCAACAGC------------------AACA.............................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AGCA--AC----AGCAACAGCAA--A----------------TGCGTAAGAAAGACAAAGATA-----------GATCGA-------ATAGTAGTTGC---ATTGGC---------------------------------------------------------------------AGTGGTAG----------T--------------------------------CATGTTGGTGCTGGTAGCGGTA------GTC----AA--GCAAATAGTGTCAAGCATCTGCAGAATAAG--------------------------------------------------------------------------------------------CAAAAGCAACAACAACTACAGCAGCAA------------CAGCAACAGC------------------AGCAACAAAAG---------------------------------CAACA------------A---CAGCA-------ACC--GCCACAGC---AACAGCAAA---------------A--G------------CAGCAGCAACTCGAT--GTTGCAGCAGCAAC------------------AGCAGCAGCAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAAA---------------A--G------------CAGCAGC.....................................................	18	5	0.20	1	1	0	0	0	0	0	0

dmo_2378

scaffold_6680:6392503-6392653 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-20.2	-19.8	-19.8