ID:

dmo_2374

 Coordinate:

scaffold_6680:6197090-6197240 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.4 -8.3 -8.3

Flybase annnotation

CDS [Dmoj\GI12319-cds]; exon [dmoj_GLEANR_12339:2]; intron [Dmoj\GI12319-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_6308:2477452-2477471 -
  2. scaffold_6328:1091888-1091907 -
  3. scaffold_6473:159768-159787 -
  4. scaffold_6496:4352489-4352508 -
  5. scaffold_6496:12113611-12113630 -
  6. scaffold_6496:15588079-15588098 -
  7. scaffold_6496:16383096-16383115 -
  8. scaffold_6500:1907829-1907848 -
  9. scaffold_6500:3262132-3262151 -
  10. scaffold_6500:16648182-16648201 -
  11. scaffold_6500:24301696-24301715 -
  12. scaffold_6540:6647042-6647061 -
  13. scaffold_6540:20287890-20287909 -
  14. scaffold_6654:1657937-1657956 -
  15. scaffold_6654:1914597-1914616 -
  16. scaffold_6680:5697426-5697445 -
  17. dmo_2374  scaffold_6680:6197143-6197162 -
  18. scaffold_6680:10698285-10698304 -
  19. scaffold_6680:19025940-19025959 -
  20. scaffold_6680:20250243-20250262 -
star
  1. scaffold_6328:295876-295898 +
  2. scaffold_6359:1416801-1416823 +
  3. scaffold_6359:3083126-3083148 -
  4. scaffold_6473:4421966-4421988 +
  5. scaffold_6473:6227059-6227081 -
  6. scaffold_6496:1230671-1230693 -
  7. scaffold_6496:4301441-4301463 -
  8. scaffold_6496:10184542-10184564 -
  9. scaffold_6496:16143805-16143827 +
  10. scaffold_6496:17580372-17580394 +
  11. scaffold_6496:23379526-23379548 +
  12. scaffold_6500:2603408-2603430 +
  13. scaffold_6500:3452310-3452332 -
  14. scaffold_6540:5915702-5915724 +
  15. scaffold_6540:22901434-22901456 +
  16. scaffold_6680:691699-691721 +
  17. dmo_2374  scaffold_6680:6197173-6197195 -
  18. scaffold_6680:11540482-11540504 +
  19. scaffold_6680:20007641-20007663 +
  20. scaffold_6680:22447785-22447807 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCAAATCCGCGTATCTCAGTTGCCGCGTGCGCAATTTGGCCAACAAAACGGTGAGTGCCAACAACTAACAGCTAGAAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGAAGCAGCAGCAGCAACAGCAACAGCAGCAGCTAGATGGCTAAAACTTTTCGCCTGTTCGTGACGATCCGCTTCAGCCTCTAAAGTTTTTTGACATTACCCGCCCCCCATCCGGGCGATGTGTGTCGCTGACGCC
***********************************************************************************************((....((.((.((.((.......)).)).)).))....))............******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
 V110
male body
.................................................................................................................................................................................GACGATCCGTTTCAGCCT........................................................ 18 1 1 1.00 1 1 0 0
................................................................................................................................GCAACAGCAACAGCAGCAGC....................................................................................................... 20 0 20 0.25 5 0 5 0
...............................................................................................................CAACAGAAGCAGCAGCAGCAACA..................................................................................................................... 23 0 8 0.13 1 0 0 1
....................................................................................................................................................................GTGGCCTGTTAGTGACGAT.................................................................... 19 3 10 0.10 1 0 0 1
.................................................................................................................ACAGAAGCAGCAGCAGCAAC...................................................................................................................... 20 0 11 0.09 1 0 1 0
..................................................................................................................................................................TTTTCGCCTGGCCGTGAGG...................................................................... 19 3 20 0.05 1 0 1 0
...............................................................................................GCAGCAGCAGCAGCAGCAACAGA..................................................................................................................................... 23 0 20 0.05 1 0 1 0
..............................................................................................................GCAACAGAAGCAGCAGCAGC......................................................................................................................... 20 0 20 0.05 1 0 0 1

Anti-sense strand reads

CGTTTAGGCGCATAGAGTCAACGGCGCACGCGTTAAACCGGTTGTTTTGCCACTCACGGTTGTTGATTGTCGATCTTCGTCGTCGTCGTCGTTGTCGTCGTCGTCGTCGTCGTTGTCTTCGTCGTCGTCGTTGTCGTTGTCGTCGTCGATCTACCGATTTTGAAAAGCGGACAAGCACTGCTAGGCGAAGTCGGAGATTTCAAAAAACTGTAATGGGCGGGGGGTAGGCCCGCTACACACAGCGACTGCGG
*******************************************************************************************************((....((.((.((.((.......)).)).)).))....))............*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 V049
head
 M046
female body
................................................................................................................................................................................................................TGGAATGGGCGGGAGGGAGGC...................... 21 3 3 0.33 1 1 0 0
.....AGGCACATAGTGTCCACGG................................................................................................................................................................................................................................... 19 3 6 0.17 1 0 1 0
........................................................CGGATGTTGATTGCCGAA................................................................................................................................................................................. 18 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6680:6197040-6197290 - dmo_2374 GCAAATCCGCGTAT----CTCAGTTG---CCGCGTGCGCAATTT--GGCCAACAAAACGGTGAG-------T---G----------------CCA----------AC-------A------------------------------ACTAACAG--------------------------------CT---AGAA------GCAG------------------------------------------------------------------CAGCAGCAGCAACAGCAGCA--------------------------------------------GCAGCAGCAG---CAAC---AGAAGCA----------GCAGCA------------------GCAACAGCAACA---------GCA---GCAGCTA---------GA-------------------------------TGGCTAAAAC--TTTTCGCCTGT----TCGTGA-----------------------------------------------------------------------------CG-----------------ATCCGC-----TTC-----AGCC----------TCTAAA--------GTTT------T-----------------TTGACAT---------------------------------TAC----------------CCGCCCCCCATCCGGGCGATGTGTGTCGC-------------------------------------TGACGCC
droVir3 scaffold_13049:9147794-9147938 + GCAAATCCGCGTAT----CTCAGTTG---CCGCGTTCGCAATTT--GGCCAACAAAACGGTGAG-------T---G----------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-A---ACAGCA-------------------------------------------------------------GA-------------------------------TGACTAAAAC--TTTTCGGCTGT----TCGTGA-----------------------------------------------------------------------------CG-----------------ATCCGCCTA-----------GCC----------TTTAAA--------GTTTTT-----------------------G-ACATTAT---------------------------------------------------------------------GTGTGTATC-------------------------------------TTTCCCT
droGri2 scaffold_15245:6064254-6064488 + CAAATGCTGCG-----------------------CCCGAAATC------GGCAG--------AC-------A---GCCAACAAAT------GGTAGCCAAAAGAAGCTACA-----------------------------------------G------------------------------------CAGCA---------------------------------------------G---------------------------------CAGCAGC---------A-----------------------------------GCAACAACAGCAGC---------------------AGCA-------------------------------ACTACAGCAGCAGCAGCAGC---------TACAACTGCAA-------------------------------------------------------------------------------------------CCACACTACAG---TGATAAGCTGCG------CAT------------TTTGGAGAC-------------------------GA-----------GCA----------TTGAGA--------ATTTGG-----------------------A-TCGTCAT---------------------------------------------------------------------TTGAAAACATTTCCCTGCCTCTATGCGCCGCAGCAAACCGTGTCCTTTATGCA
droWil2 scf2_1100000004902:10329137-10329321 - CCAACACTGCC-GT----CGCCGCCG---CCGCCGCCGCCACC----ACCAACA--------------------------------------------------------------------------------------------------A------------------------------------CAATA------ATAA-----------T------AACA-------------AC---------AAG------A---A------CAA---CATC---------------------AGCCAGGC----CAG----------------CAGCAGCAGCAAAAGCAAC---------AGCAATA----GTAGTA------TCAGAAGC-AGC-----------------------------AGCAGCAGCAA---CG-----CC--A---------------------------ACAC--AC--------------------------------T----------------------------------------CACTTTTCG------------------------------CTCA-------------------CTC----------ACGAAA--------ATT------------------------------------------------------------------------------------------------------------TCAAT-------------------------------------ATCCAAA
dp5 XR_group6:7621032-7621247 - GCAAGAACGCCTAT----CTCAGCTG---CCGTGTGCGCAATTT--GGCCAACAAAACGGTGAG-------T-------------------TTTTGGCTTAAAGA-------------------TT------------------------G----------------------------------CC------A------GGAG--TGTCC-------------------------------------------------------------------TT----------------------------------------------------GGGTAGGGGTTACGTGGGG---------TTT----GC---------------------------------------------------------------------------------CGGGGGTTAACAGCGTACTCGTGTCGAAAAG--TTTGCTGTCGT----GCGTGACGCCGACGAGGAGT----------------------------------------C------------------------GC-------------CT------------T--T---TGCC----------ATTAAA--------GTTTT-----------------------GTG-------------------------------------------------------CT-------------------GTGCCCAAC-------------------------------------TTTCGTT
droPer2 scaffold_34:812055-812238 + CCAGAGTCCAGCC---------------------------------------------TGCGGA-------G---------------CCAC----------AGCAAC-------------TACGCG------------------------CAACAGATCGAGGCCAACGATCTGGCGGTCCTGATCCAACAGCA------GCAG---------------------------------------------------------------------CAGCAGCAACAGAGGCA----------------------GCAG----------------CAGCAGCAGCAACAGCAGC---------AGCA-------------------------------ACAACAGCAGCA---------------GCAGCAA---------GG-----------------------------------------------------------------------------CAACTCCACACCCGCCACAG---CGATCCTG--CG-----------------------------------------------------C-----TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA
droAna3 scaffold_13337:15485146-15485307 + CAACAGCAGC-------------------------------------------------------------------------------------------AGCAGCA----------------ACA-------------------------A------------------------------------CAGCA------GCAG-----------C------AACA-------------AC---------A------------------------ACA---------ACA-------------------GCAACAG----------------CAGCAACAACAACACCAGC---------AGC----AACAGCAGCA------------GC-ACC-----------------------------AACAACAACAG---CA-----CGC-------------------------------------------------------------------------------------------------------------------------------------------CGCCGTAGCCGCC--------------GCCGCAG------------------------------CCGCCGCTTCACATCCACATGTTCA---------------------------------------------------------------------------------TGCCGC-------------------------------------ACACGCC
droBip1 scf7180000396428:554881-555080 - TCCAC-----TTAA----TCCAGTCG---CTGGCCGCCCAGGTGCTCTTCAACAAGCAGGAGAA-------G---------------CAAC----------AGCAGC-------------AGCACG------------------------C----------------------------------CC------A------GGAG--CAGTACCAGC------AACA-------------GC---------A------------------------ACA---------GCA--------------------------------------------------TCAACACCAAC---------AACAACA----GCAGCA------G------CA---GCAACAGCAGCA---------GCA---GCAACAACAACAT---CA-----T--------------------------------------------------------------------------------CCACATCACCG---TCAGCATC--AG-----------------------------------------------------C-----AT----------------------------------------------------------CAGCA---------------------------------------------------------------------------------TCAGTT-------------------------------------CCTGGAC
droKik1 scf7180000301815:47278-47481 - GTGGGCAG---TC---------------------------------------------------------------------------------------TGTCAGCAAC----AAATGCAAAGC-G----------------------------------------------------------------CCA------AAAA-----------C------TGCGACACTTTGTATAAAT---------TG------TGTTGAAAACAGCAGCAGCAACAACAACAGCA--------------------------------------------GCAGC---------------------A----------GCAGCA------G---CAGC-AGC-----------------------------AGCGGAGGCAG---TG-------------------------------------GAAA--ACTCCGTCTGT----CCGAGG-----------------------------------------------------------------------------CA-----------------ATTT---CGGGCTG-----AGCC------------------------GCGACTGGCGA-----------------TCGG-------------------------------------------------TGCTGGCCACACCCCCTTCGGG--------------------------------------C----------------AA
droFic1 scf7180000454077:2762886-2763099 - GCAGGTGC---TCT----CTC-----------TGTGCCCCGTGT--GACCAACA----------CAACCGGA----------------CAC----------AGCAGC-------A------------------------------ACTTGCAG------------------------------------CAGCA------ACAG------------------------------------------------------------------CAA---CAGC---------------------ACACA---GTGGCAG----------------CAGCAGCAGCAGCACCAAC---------AGCAACA----GCAGCA------A------CA---CCAAC------------GG-AAC---------AGCAGCAA---CA-----TG--G---------------------------AGGC--ACTTTGCCTGA----TTGCAC-----------------------------------------------------------------------------CC-----------------GTCTGCCGG-----------GTGTCCAATTCCATCTAGT--------GTCT------T----------------------------------------------------------------------------------------------------CCAAC-------------------------------------TTTGCCC
droEle1 scf7180000491261:1244422-1244610 + TCTGGC-------------------------------------------AAAGG----------CAACGGCATATG------------GGC----------AGCAGC-------AACCATAAAGC-A-------------------CTTGAAG------------------------------------TAGCA------ACAG-----------C------AACA-------------GC---------A------------------------GCAA---------CA-----------------------------------TCTACAGCAGCAAC---------------------AGCAACA----GCAGCA------A------CA---GCAAC------------AGCTAGAGTAGCAACAACAGGAA--------------------------------------------GCAGTTTGC---------------------------------------------------------------C------CATTTTCA------------------------------TGGC---------------------------------ACTGAA--------GCATTT-----------------------C-ATTTT-----------------------------------------------------------------------------ACATCTCCCCG------------------------------CCCCCA
droRho1 scf7180000780091:224457-224648 + CAGCAACAA--------------------------------------------------------------------------GTTGTGG--CCGCCGCCCAGCAGCAACACCA-----------------------------------GCAG------------------------------------CAGCA------GCAG-----------C------AACA-------------AC---------AGGCGGTGCA---A------------CAGC------AACA--------------------------------------------GCAGCAGCAGCATCAACAACAGCAGCA----------GCAACA------TCAACAGC-AGC-----------------------------AACAACAGCAG---CA-----TGC-------------------------------------------------------------------------------------------------------------------------------------------CGCCGTAG---CC--------------GCCGCAG------------------------------CTGCCGCTTCGCATCCGCATATGCA---------------------------------------------------------------------------------TGCCGC-------------------------------------CCATGCC
droBia1 scf7180000302075:3365634-3365863 + TCATTTCC----------------------CACATGCACCATTA--TTCGTTGAAACCCGTAAA-------T-------------------TTCACCGAAAACGAACAGC-----------------------------------------------------------------------------------A------GCAGCA---------------------------------G---------------------------------CAGCAGT---------A----------------------GCAG----------------CAGTAGCAGCAGCGCC-AT---------GGCAACA----ACGGCA---------------------------------------------------------GCACCAATCCAAG--AAGCTGCTT-----------------------------------------------------------------------------------------------------AA------------CAC-GAGA-------------------------ATA-----------ATG----------TTTAAA--------ATGTTT-----------------------A-T---TATGTGTGCAAGTGACGCGAGCTCCTTTCCCGCTCCTTGGC---------GTCCTCCCCCCTCTCAGA-------------------------------T-----------------GACAGGCC
droTak1 scf7180000415364:258065-258281 + GCGCAGTCCTGCCTTTTGGGCAGT--------CGGGCCCCGGGC--GCCGAGTC----------CCGCCAGC-------------------------------------------------------------------------------GG------------------------------------CAGCA------GCAG---------------------------------------------------------------------CAGCAGCAACAACAGCAGCAGCAGCAACTGGCCGCC---GTCGGTCTGCCGG-------CAACTGCAGCCGCCCAGGC---------AGC----GGTGGCAGCG------------GCCGCC-----------------------------AACAACA----------------------------------TGTTCGGATCGAACAG--CTCGCTC-------------------------------------------------------------------------TTCTCGAATC----------ACCTGGCCATTCCGGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------C-----------------CGCAGCCG
droEug1 scf7180000409463:1021843-1022039 + ACACAGCAGC--------------------------------------------------------------------------------------------------------AACTGCG---ATA-------------------------A--------------------------------------GAGACAGCAGCAACA---------------------------------T---------------------------------CTGCAGT-----------------------------------------------------AACAACACCAACACCAGC---------AGTCAC-A---ACAGCA------G---CACC-AGC-----------------------------AACAGCAGCAA---CA-----TTCGC----------------------------------ATTCGCCTGTCATTCGGCGA-----------------------------------------------------------------------------CT-----------------ATCTGG-----CTG-----TGC-----------TTT--TGCTCTTCAGTTT------T-----------------CAGTCGT---------------------------------TCGCTGGCAGACGCGCC----------------GACAACGTGCGTCG----------------------CAGTC----------------GC
dm3 chr3L:10578158-10578349 + GTGGCTGC-------------------------------------------------------------------------------------CGCCGCCCAGCAGCAACACCA----GCA---GCA-------------------------G------------------------------------CAGCA------GCAG-----------C------AACA-------------AC---------AGGCCGTGCA---G------CAA---CAAC---------------------AGGCGGTC----CAG----------------CAGCAGCAGCAACATCAAC---------AAC----AACAGCAGCA------------GC-AGC-----------------------------AACAACAGCAA---CA-----TGC-------------------------------------------------------------------------------------------------------------------------------------------CGCCGTAGCAGCC--------------GCCGCAG------------------------------CTGCCGCTTCGCATCCGCACATGCA---------------------------------------------------------------------------------TGCCGC-------------------------------------TCATGCC
droSim2 3r:13718784-13719041 + TCATTTCC----------------------CACATGCACCATTA--TTCGTTGAAACCCGTAAA-------T-------------------TTCACCGAAAACGAACAGCACCA--------------------------------------G------------------------------------TAGTC------GCAG------------------------------------------------------------------CAG---CATC---------------------AAACA---GCAGCAG----------------CAGTAGTAGCAGCAGCAGC---------AGAA----------GCAGAAACAG------CA---GCAAC------------GT-GGCA---------------GCACCAATCCAAG--GAGCTGCTT-----------------------------------------------------------------------------------------------------AA------------CAC-GAGA-------------------------ATA-----------ATG----------TTTAAA--------ATGTTT-----------------------A-T---TATGTGTGCAAGTGACGCGAGCTCCTTTCCCGTTCCTTGGC---------ATCTTTCCCCCTTTTGGA-------------------------------T-----------------GACAGGCC
droSec2 scaffold_24:340338-340585 + ACCATTCTGTCCAC----CTCGGTTAGCTCCACCTGCTCCA----------ATTCGCTGGTGAA-------C---A----CCAGCGGTGGC----AG---CATTAGCA----------------ACA----------------------------------------------------------------CCA------GCAG-----------C------ATTGGCTCTCCGCAACAGC---------A------------------------GCAAT-----------------------------------------------------TGCAGCTGCAGCAGCAGC---------AGGCACA----GCAGCA------A------CA---GCAGC------------GCGTGCAGCAGCAACAGAGGGAA-------------------------------------------AAT--CTTGCTT--------------------------------------CGGCCATGGCCGCTGGCAT----GCGTCATC------------------------AT-------------CC------------C--C---TGCT----------GCCGCC--------GCCAG-----------------------AGG-------------------------------------------------------CT-------------------ATG--CA--------------------C-----------------GCCAATCC
droYak3 2L:5163793-5164033 + CGATAAGA--------------------------------------------------------------------------------GAC----------AGCAGCAAC-------------ATC------------------------T----------------------------------GC------A------GTAA--CAC-AGCAGCAGCAGCAACA-------------ACAGCAATAACAG------CA---------------GCAA---------CA------TCAGCAGTCGCA----ACAG----------------CAACAGCAGCAACATCAGC---------AGTCGC-AACAGCAACA------------GC-AGC-----------------------------AACAACAGCAA---CA-----CTCGC----------------------------------ATTCGCCTGACATTCGGCGA-----------------------------------------------------------------------------CT-----------------ATCTGG-----CTG-----TGT-----------TTT--CACTCTTCAGTTT------T-----------------CAGTCGT---------------------------------TCGCTGGCAGACGCGCC----------------GACAACGTGCGTCG----------------------CAGTC----------------GC
droEre2 scaffold_4770:999718-999901 + CAGTGGCAGC-------------------------------------------------------------------------------------------AGCAGCA----------------CGGCCAGCAGCAGTGCCTCCCACTTGCTG------------------------------------CAGCA------GCAG---------------------------------------------------------------------CAGCAGCAACAGCAGCA-----------------------------------------------GCAGCAACAGCAGC---AGCACCA----------GCAGCA------------------GCAAC------------AGGCACAGCAGCAGCAGCTG---------------------------------------------------ACCGC---------------------------------------------------------------C------CAT--------------------------------------------------------------------------------------------------------------------------------CCCAGCGACCCGAAGTCCTCGCCCGCCCTCCAGCTGA---------------------------TG---GCCGC-------------------------------------CTCCGCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GCAAATCCGCGTAT----CTCAGTTG---CCGCGTGCGCAATTT--GGCCAACAAAACGGTGAG-------T---G----------------CCA----------AC-------A------------------------------ACTAACAG--------------------------------CT---AGAA------GCAG------------------------------------------------------------------CAGCAGCAGCAACAGCAGCA--------------------------------------------GCAGCAGCAG---CAAC---AGAAGCA----------GCAGCA------------------GCAACAGCAACA---------GCA---GCAGCTA---------GA-------------------------------TGGCTAAAAC--TTTTCGCCTGT----TCGTGA-----------------------------------------------------------------------------CG-----------------ATCCGC-----TTC-----AGCC----------TCTAAA--------GTTT------T-----------------TTGACAT---------------------------------TAC----------------CCGCCCCCCATCCGGGCGATGTGTGTCGC-------------------------------------TGACGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAACA---------GCA---GCAGC............................................................................................................................................................................................................................................................................................................................................................................................20200.255500000
...........................................................................................................................................................................................................................................................................................................................................................CAAC---AGAAGCA----------GCAGCA------------------GCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................2380.131000001
.............................................................................................................................................................................................................................................................................................................................................................AC---AGAAGCA----------GCAGCA------------------GCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................20110.091100000
............................................................................................................................................................................................................................................................................................GCAGCA--------------------------------------------GCAGCAGCAG---CAAC---AGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
.......................................................................................................................................................................................................................................................................................................................................................G---CAAC---AGAAGCA----------GCAGCA------------------GC..........................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
droVir3
GCAAATCCGCGTAT----CTCAGTTG---CCGCGTTCGCAATTT--GGCCAACAAAACGGTGAG-------T---G----------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-A---ACAGCA-------------------------------------------------------------GA-------------------------------TGACTAAAAC--TTTTCGGCTGT----TCGTGA-----------------------------------------------------------------------------CG-----------------ATCCGCCTA-----------GCC----------TTTAAA--------GTTTTT-----------------------G-ACATTAT---------------------------------------------------------------------GTGTGTATC-------------------------------------TTTCCCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
CAAATGCTGCG-----------------------CCCGAAATC------GGCAG--------AC-------A---GCCAACAAAT------GGTAGCCAAAAGAAGCTACA-----------------------------------------G------------------------------------CAGCA---------------------------------------------G---------------------------------CAGCAGC---------A-----------------------------------GCAACAACAGCAGC---------------------AGCA-------------------------------ACTACAGCAGCAGCAGCAGC---------TACAACTGCAA-------------------------------------------------------------------------------------------CCACACTACAG---TGATAAGCTGCG------CAT------------TTTGGAGAC-------------------------GA-----------GCA----------TTGAGA--------ATTTGG-----------------------A-TCGTCAT---------------------------------------------------------------------TTGAAAACATTTCCCTGCCTCTATGCGCCGCAGCAAACCGTGTCCTTTATGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCG------CAT------------TTTGGAGAC-------------------------G.......................................................................................................................................................................................................2011.00101
...........................................................................................................................................................................................................................................................................................................................................ACAGCAGC---------------------AGCA-------------------------------ACTACA......................................................................................................................................................................................................................................................................................................................................................................................................................1870.14110
.................................................................................................................................................................................................................................................................................CAGCAGC---------A-----------------------------------GCAACAACAGCAGC---------------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10220
.................................................................................................................................................................................................................................................................................................A-----------------------------------GCAACAACAGCAGC---------------------AGCA-------------------------------AC..........................................................................................................................................................................................................................................................................................................................................................................................................................21200.05110
droWil2
CCAACACTGCC-GT----CGCCGCCG---CCGCCGCCGCCACC----ACCAACA--------------------------------------------------------------------------------------------------A------------------------------------CAATA------ATAA-----------T------AACA-------------AC---------AAG------A---A------CAA---CATC---------------------AGCCAGGC----CAG----------------CAGCAGCAGCAAAAGCAAC---------AGCAATA----GTAGTA------TCAGAAGC-AGC-----------------------------AGCAGCAGCAA---CG-----CC--A---------------------------ACAC--AC--------------------------------T----------------------------------------CACTTTTCG------------------------------CTCA-------------------CTC----------ACGAAA--------ATT------------------------------------------------------------------------------------------------------------TCAAT-------------------------------------ATCCAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................A---A------CAA---CATC---------------------AGCCAGGC----CAG----------------CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
........................................................................................................................................................................................................................................................................................................................................................................................A------TCAGAAGC-AGC-----------------------------AGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................2240.25100010
...............................................................................................................................................................................................ATA------ATAA-----------T------AACA-------------AC---------AAG------A---A------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.11101000
............................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAAAAGCAAC---------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................20130.08100010
dp5
GCAAGAACGCCTAT----CTCAGCTG---CCGTGTGCGCAATTT--GGCCAACAAAACGGTGAG-------T-------------------TTTTGGCTTAAAGA-------------------TT------------------------G----------------------------------CC------A------GGAG--TGTCC-------------------------------------------------------------------TT----------------------------------------------------GGGTAGGGGTTACGTGGGG---------TTT----GC---------------------------------------------------------------------------------CGGGGGTTAACAGCGTACTCGTGTCGAAAAG--TTTGCTGTCGT----GCGTGACGCCGACGAGGAGT----------------------------------------C------------------------GC-------------CT------------T--T---TGCC----------ATTAAA--------GTTTT-----------------------GTG-------------------------------------------------------CT-------------------GTGCCCAAC-------------------------------------TTTCGTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CCAGAGTCCAGCC---------------------------------------------TGCGGA-------G---------------CCAC----------AGCAAC-------------TACGCG------------------------CAACAGATCGAGGCCAACGATCTGGCGGTCCTGATCCAACAGCA------GCAG---------------------------------------------------------------------CAGCAGCAACAGAGGCA----------------------GCAG----------------CAGCAGCAGCAACAGCAGC---------AGCA-------------------------------ACAACAGCAGCA---------------GCAGCAA---------GG-----------------------------------------------------------------------------CAACTCCACACCCGCCACAG---CGATCCTG--CG-----------------------------------------------------C-----TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................CAC----------AGCAAC-------------TACGCG------------------------CAACAGATCGAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.002200000
........................................................................................CAC----------AGCAAC-------------TACGCG------------------------CAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.....GTCCAGCC---------------------------------------------TGCGGA-------G---------------CCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.......................................................................................................................................................................................................................................................................................................................................................ACAGCAGC---------AGCA-------------------------------ACAACA......................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
............................................................................................................................................................................................ACAGCA------GCAG---------------------------------------------------------------------CAGCAGCAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
........................................................................................................................................................................................................................................................................................................................................................................AGCA-------------------------------ACAACAGCAGCA---------------GCAGC............................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
................................................................................................................................................................................................CA------GCAG---------------------------------------------------------------------CAGCAGCAACAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
..........................................................................................................................................................................................................................................................................................................................................................................CA-------------------------------ACAACAGCAGCA---------------GCAGCAA---------.................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
.........................................................................................................................................................................................................................................................................................................................................................................GCA-------------------------------ACAACAGCAGCA---------------GCAGC............................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
droAna3
CAACAGCAGC-------------------------------------------------------------------------------------------AGCAGCA----------------ACA-------------------------A------------------------------------CAGCA------GCAG-----------C------AACA-------------AC---------A------------------------ACA---------ACA-------------------GCAACAG----------------CAGCAACAACAACACCAGC---------AGC----AACAGCAGCA------------GC-ACC-----------------------------AACAACAACAG---CA-----CGC-------------------------------------------------------------------------------------------------------------------------------------------CGCCGTAGCCGCC--------------GCCGCAG------------------------------CCGCCGCTTCACATCCACATGTTCA---------------------------------------------------------------------------------TGCCGC-------------------------------------ACACGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.AACAGCAGC-------------------------------------------------------------------------------------------AGCAGCA----------------ACA-------------------------A------------------------------------CA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22201.052111000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACATCCACATGTTCA---------------------------------------------------------------------------------TGCC..............................................2311.001010000
.........................................................................................................GCA----------------ACA-------------------------A------------------------------------CAGCA------GCAG-----------C------AACA-------------AC---------A------------------------AC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.331010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCC--------------GCCGCAG------------------------------CCGCCGC.....................................................................................................................................................1830.331000100
......................................................................................................................................................................................................................................................................................................................................................AACACCAGC---------AGC----AACAGCAGCA------------..................................................................................................................................................................................................................................................................................................................................................................................................................................2240.251010000
......................................................................................................GCAGCA----------------ACA-------------------------A------------------------------------CAGCA------GCAG-----------C------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.255050000
....................................................................................................................................................................................................................................................................................................................................................ACAACACCAGC---------AGC----AACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.201010000
........................................................................................................................................................A------------------------------------CAGCA------GCAG-----------C------AACA-------------AC---------A------------------------ACA---------ACA-------------------GC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.171010000
..........................................................................................................................................................................................................................................................A------------------------ACA---------ACA-------------------GCAACAG----------------CAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20160.132101000
.AACAGCAGC-------------------------------------------------------------------------------------------AGCAGCA----------------ACA-------------------------A------------------------------------CAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102110000
......CAGC-------------------------------------------------------------------------------------------AGCAGCA----------------ACA-------------------------A------------------------------------CAGCA------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102020000
..............................................................................................................................A-------------------------A------------------------------------CAGCA------GCAG-----------C------AACA-------------AC---------A------------------------AC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102020000
........................................................................................................................................................................................................GCAG-----------C------AACA-------------AC---------A------------------------ACA---------ACA-------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102000002
...................................................................................................................................................................................................................................................................................ACA---------ACA-------------------GCAACAG----------------CAGCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21140.071010000
.................................................................................................................................................................................................................................A-------------AC---------A------------------------ACA---------ACA-------------------GCAACAG----------------CAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21140.071010000
..........................................................................................................................................................................................................AG-----------C------AACA-------------AC---------A------------------------ACA---------ACA-------------------GCAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.071010000
..ACAGCAGC-------------------------------------------------------------------------------------------AGCAGCA----------------ACA-------------------------A------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
....AGCAGC-------------------------------------------------------------------------------------------AGCAGCA----------------ACA-------------------------A------------------------------------CAGCA------GCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000001
.....GCAGC-------------------------------------------------------------------------------------------AGCAGCA----------------ACA-------------------------A------------------------------------CAGCA------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
.....................................................................................................................................................................................................................................................................................A---------ACA-------------------GCAACAG----------------CAGCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
.............................................................................................................................................................................................CAGCA------GCAG-----------C------AACA-------------AC---------A------------------------ACA---------ACA-------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
.....GCAGC-------------------------------------------------------------------------------------------AGCAGCA----------------ACA-------------------------A------------------------------------CAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
.......................................................................................................................................................................................................................................................................................................................AACAG----------------CAGCAACAACAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000
........................................................................................................AGCA----------------ACA-------------------------A------------------------------------CAGCA------GCAG-----------C------AAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
...............................................................................................................................................................................................................................................................................................ACA-------------------GCAACAG----------------CAGCAACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
.....................................................................................................AGCAGCA----------------ACA-------------------------A------------------------------------CAGCA------GCAG-----------C------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
.............................................................................................................................CA-------------------------A------------------------------------CAGCA------GCAG-----------C------AACA-------------AC---------A------------------------ACA---------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
....................................................................................................................................................................................................................................................................................CA---------ACA-------------------GCAACAG----------------CAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
CAACAGCAGC-------------------------------------------------------------------------------------------AGCAGCA----------------ACA-------------------------A------------------------------------CAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000001
.......AGC-------------------------------------------------------------------------------------------AGCAGCA----------------ACA-------------------------A------------------------------------CAGCA------GCAG-----------C------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000001
........................................................................................................................................................A------------------------------------CAGCA------GCAG-----------C------AACA-------------AC---------A------------------------AC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
..ACAGCAGC-------------------------------------------------------------------------------------------AGCAGCA----------------ACA-------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
...........................................................................................................................................................................................................................................................................................................................................................CAGC---------AGC----AACAGCAGCA------------GC-A..............................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
............................................................................................................................ACA-------------------------A------------------------------------CAGCA------GCAG-----------C------AACA-------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
.AACAGCAGC-------------------------------------------------------------------------------------------AGCAGCA----------------ACA-------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
..ACAGCAGC-------------------------------------------------------------------------------------------AGCAGCA----------------ACA-------------------------A------------------------------------CAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
...........................................................................................................A----------------ACA-------------------------A------------------------------------CAGCA------GCAG-----------C------AACA-------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
droBip1
TCCAC-----TTAA----TCCAGTCG---CTGGCCGCCCAGGTGCTCTTCAACAAGCAGGAGAA-------G---------------CAAC----------AGCAGC-------------AGCACG------------------------C----------------------------------CC------A------GGAG--CAGTACCAGC------AACA-------------GC---------A------------------------ACA---------GCA--------------------------------------------------TCAACACCAAC---------AACAACA----GCAGCA------G------CA---GCAACAGCAGCA---------GCA---GCAACAACAACAT---CA-----T--------------------------------------------------------------------------------CCACATCACCG---TCAGCATC--AG-----------------------------------------------------C-----AT----------------------------------------------------------CAGCA---------------------------------------------------------------------------------TCAGTT-------------------------------------CCTGGACSizeHit CountTotal NormTotal
No Reads
droKik1
GTGGGCAG---TC---------------------------------------------------------------------------------------TGTCAGCAAC----AAATGCAAAGC-G----------------------------------------------------------------CCA------AAAA-----------C------TGCGACACTTTGTATAAAT---------TG------TGTTGAAAACAGCAGCAGCAACAACAACAGCA--------------------------------------------GCAGC---------------------A----------GCAGCA------G---CAGC-AGC-----------------------------AGCGGAGGCAG---TG-------------------------------------GAAA--ACTCCGTCTGT----CCGAGG-----------------------------------------------------------------------------CA-----------------ATTT---CGGGCTG-----AGCC------------------------GCGACTGGCGA-----------------TCGG-------------------------------------------------TGCTGGCCACACCCCCTTCGGG--------------------------------------C----------------AASizeHit CountTotal NormTotal
No Reads
droFic1
GCAGGTGC---TCT----CTC-----------TGTGCCCCGTGT--GACCAACA----------CAACCGGA----------------CAC----------AGCAGC-------A------------------------------ACTTGCAG------------------------------------CAGCA------ACAG------------------------------------------------------------------CAA---CAGC---------------------ACACA---GTGGCAG----------------CAGCAGCAGCAGCACCAAC---------AGCAACA----GCAGCA------A------CA---CCAAC------------GG-AAC---------AGCAGCAA---CA-----TG--G---------------------------AGGC--ACTTTGCCTGA----TTGCAC-----------------------------------------------------------------------------CC-----------------GTCTGCCGG-----------GTGTCCAATTCCATCTAGT--------GTCT------T----------------------------------------------------------------------------------------------------CCAAC-------------------------------------TTTGCCCSizeHit CountTotal NormTotal
No Reads
droEle1
TCTGGC-------------------------------------------AAAGG----------CAACGGCATATG------------GGC----------AGCAGC-------AACCATAAAGC-A-------------------CTTGAAG------------------------------------TAGCA------ACAG-----------C------AACA-------------GC---------A------------------------GCAA---------CA-----------------------------------TCTACAGCAGCAAC---------------------AGCAACA----GCAGCA------A------CA---GCAAC------------AGCTAGAGTAGCAACAACAGGAA--------------------------------------------GCAGTTTGC---------------------------------------------------------------C------CATTTTCA------------------------------TGGC---------------------------------ACTGAA--------GCATTT-----------------------C-ATTTT-----------------------------------------------------------------------------ACATCTCCCCG------------------------------CCCCCASizeHit CountTotal NormTotal
No Reads
droRho1
CAGCAACAA--------------------------------------------------------------------------GTTGTGG--CCGCCGCCCAGCAGCAACACCA-----------------------------------GCAG------------------------------------CAGCA------GCAG-----------C------AACA-------------AC---------AGGCGGTGCA---A------------CAGC------AACA--------------------------------------------GCAGCAGCAGCATCAACAACAGCAGCA----------GCAACA------TCAACAGC-AGC-----------------------------AACAACAGCAG---CA-----TGC-------------------------------------------------------------------------------------------------------------------------------------------CGCCGTAG---CC--------------GCCGCAG------------------------------CTGCCGCTTCGCATCCGCATATGCA---------------------------------------------------------------------------------TGCCGC-------------------------------------CCATGCCSizeHit CountTotal NormTotal
No Reads
droBia1
TCATTTCC----------------------CACATGCACCATTA--TTCGTTGAAACCCGTAAA-------T-------------------TTCACCGAAAACGAACAGC-----------------------------------------------------------------------------------A------GCAGCA---------------------------------G---------------------------------CAGCAGT---------A----------------------GCAG----------------CAGTAGCAGCAGCGCC-AT---------GGCAACA----ACGGCA---------------------------------------------------------GCACCAATCCAAG--AAGCTGCTT-----------------------------------------------------------------------------------------------------AA------------CAC-GAGA-------------------------ATA-----------ATG----------TTTAAA--------ATGTTT-----------------------A-T---TATGTGTGCAAGTGACGCGAGCTCCTTTCCCGCTCCTTGGC---------GTCCTCCCCCCTCTCAGA-------------------------------T-----------------GACAGGCCSizeHit CountTotal NormTotal
No Reads
droTak1
GCGCAGTCCTGCCTTTTGGGCAGT--------CGGGCCCCGGGC--GCCGAGTC----------CCGCCAGC-------------------------------------------------------------------------------GG------------------------------------CAGCA------GCAG---------------------------------------------------------------------CAGCAGCAACAACAGCAGCAGCAGCAACTGGCCGCC---GTCGGTCTGCCGG-------CAACTGCAGCCGCCCAGGC---------AGC----GGTGGCAGCG------------GCCGCC-----------------------------AACAACA----------------------------------TGTTCGGATCGAACAG--CTCGCTC-------------------------------------------------------------------------TTCTCGAATC----------ACCTGGCCATTCCGGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------C-----------------CGCAGCCGSizeHit CountTotal NormTotal
No Reads
droEug1
ACACAGCAGC--------------------------------------------------------------------------------------------------------AACTGCG---ATA-------------------------A--------------------------------------GAGACAGCAGCAACA---------------------------------T---------------------------------CTGCAGT-----------------------------------------------------AACAACACCAACACCAGC---------AGTCAC-A---ACAGCA------G---CACC-AGC-----------------------------AACAGCAGCAA---CA-----TTCGC----------------------------------ATTCGCCTGTCATTCGGCGA-----------------------------------------------------------------------------CT-----------------ATCTGG-----CTG-----TGC-----------TTT--TGCTCTTCAGTTT------T-----------------CAGTCGT---------------------------------TCGCTGGCAGACGCGCC----------------GACAACGTGCGTCG----------------------CAGTC----------------GCSizeHit CountTotal NormTotal
No Reads
dm3
GTGGCTGC-------------------------------------------------------------------------------------CGCCGCCCAGCAGCAACACCA----GCA---GCA-------------------------G------------------------------------CAGCA------GCAG-----------C------AACA-------------AC---------AGGCCGTGCA---G------CAA---CAAC---------------------AGGCGGTC----CAG----------------CAGCAGCAGCAACATCAAC---------AAC----AACAGCAGCA------------GC-AGC-----------------------------AACAACAGCAA---CA-----TGC-------------------------------------------------------------------------------------------------------------------------------------------CGCCGTAGCAGCC--------------GCCGCAG------------------------------CTGCCGCTTCGCATCCGCACATGCA---------------------------------------------------------------------------------TGCCGC-------------------------------------TCATGCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----TGC-------------------------------------------------------------------------------------------------------------------------------------------CGCCGTAGCAGCC--------------GCCGCAG------------------------------CT..........................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAA---CA-----TGC-------------------------------------------------------------------------------------------------------------------------------------------CGCCGTAGC...................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................AGGCGGTC----CAG----------------CAGCAGCAGCAACAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CCAGCAGCAACACCA----GCA---GCA-------------------------G------------------------------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2321.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCGCTTCGCATCCGCACATGCA---------------------------------------------------------------------------------TGCCGC-------------------------------------TC.....3311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-------------------------------------------------------------------------------------------------------------------------------------------CGCCGTAGCAGCC--------------GCC..............................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................AC---------------------AGGCGGTC----CAG----------------CAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................G-----------C------AACA-------------AC---------AGGCCGTGCA---G------CAA---CAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA---CA-----TGC-------------------------------------------------------------------------------------------------------------------------------------------CGCCGTAGCAGCC--------------.................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AGC-----------------------------AACAACAGCAA---CA-----TGC-------------------------------------------------------------------------------------------------------------------------------------------CGCCGT......................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTTCGCATCCGCACATGCA---------------------------------------------------------------------------------TGCCGC-------------------------------------.......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAA---CA-----TGC-------------------------------------------------------------------------------------------------------------------------------------------CGCCGT......................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................ACACCA----GCA---GCA-------------------------G------------------------------------CAGCA------GCAG-----------C------AAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.6350000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................AGCAACATCAAC---------AAC----AACAGCAGCA------------..................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................GCAACATCAAC---------AAC----AACAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................AGCAGCAACATCAAC---------AAC----AACAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................AACATCAAC---------AAC----AACAGCAGCA------------..................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................A---GCA-------------------------G------------------------------------CAGCA------GCAG-----------C------AACA-------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................AGCAACATCAAC---------AAC----AACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GC-AGC-----------------------------AACAACAGCAA---CA-----T.........................................................................................................................................................................................................................................................................................................................................................................1990.3330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................CAGCAGCAACATCAAC---------AAC----AACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AC---------AAC----AACAGCAGCA------------GC-AGC-----------------------------AACAA..........................................................................................................................................................................................................................................................................................................................................................................................25190.2650000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCA------------GC-AGC-----------------------------AACAAC.........................................................................................................................................................................................................................................................................................................................................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................A------------GC-AGC-----------------------------AACAACAGCAA---CA-----..........................................................................................................................................................................................................................................................................................................................................................................19200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA------------GC-AGC-----------------------------AACAACAGC......................................................................................................................................................................................................................................................................................................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................GCAGCAACATCAAC---------AAC----AACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................CAGCA------------GC-AGC-----------------------------AACAACAGCAA---C................................................................................................................................................................................................................................................................................................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................CAGCAACATCAAC---------AAC----AACAGCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA------------GC-AGC-----------------------------AACAAC.........................................................................................................................................................................................................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------------GC-AGC-----------------------------AACAACAGCA.....................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA------------GC-AGC-----------------------------AACAAC.........................................................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................CAGCA------------GC-AGC-----------------------------AACAACAGCAA---.................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AACACCA----GCA---GCA-------------------------G------------------------------------CAGCA------GCAG-----------C------AAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2770.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................AGCAACACCA----GCA---GCA-------------------------G------------------------------------CAGCA------GCAG-----------C------A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
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droSim2
TCATTTCC----------------------CACATGCACCATTA--TTCGTTGAAACCCGTAAA-------T-------------------TTCACCGAAAACGAACAGCACCA--------------------------------------G------------------------------------TAGTC------GCAG------------------------------------------------------------------CAG---CATC---------------------AAACA---GCAGCAG----------------CAGTAGTAGCAGCAGCAGC---------AGAA----------GCAGAAACAG------CA---GCAAC------------GT-GGCA---------------GCACCAATCCAAG--GAGCTGCTT-----------------------------------------------------------------------------------------------------AA------------CAC-GAGA-------------------------ATA-----------ATG----------TTTAAA--------ATGTTT-----------------------A-T---TATGTGTGCAAGTGACGCGAGCTCCTTTCCCGTTCCTTGGC---------ATCTTTCCCCCTTTTGGA-------------------------------T-----------------GACAGGCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
ACCATTCTGTCCAC----CTCGGTTAGCTCCACCTGCTCCA----------ATTCGCTGGTGAA-------C---A----CCAGCGGTGGC----AG---CATTAGCA----------------ACA----------------------------------------------------------------CCA------GCAG-----------C------ATTGGCTCTCCGCAACAGC---------A------------------------GCAAT-----------------------------------------------------TGCAGCTGCAGCAGCAGC---------AGGCACA----GCAGCA------A------CA---GCAGC------------GCGTGCAGCAGCAACAGAGGGAA-------------------------------------------AAT--CTTGCTT--------------------------------------CGGCCATGGCCGCTGGCAT----GCGTCATC------------------------AT-------------CC------------C--C---TGCT----------GCCGCC--------GCCAG-----------------------AGG-------------------------------------------------------CT-------------------ATG--CA--------------------C-----------------GCCAATCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................A----GCAGCA------A------CA---GCAGC------------GCGTGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.................................................................................................................................................................................................A------GCAG-----------C------ATTGGCTCTCCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................CA------A------CA---GCAGC------------GCGTGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
droYak3
CGATAAGA--------------------------------------------------------------------------------GAC----------AGCAGCAAC-------------ATC------------------------T----------------------------------GC------A------GTAA--CAC-AGCAGCAGCAGCAACA-------------ACAGCAATAACAG------CA---------------GCAA---------CA------TCAGCAGTCGCA----ACAG----------------CAACAGCAGCAACATCAGC---------AGTCGC-AACAGCAACA------------GC-AGC-----------------------------AACAACAGCAA---CA-----CTCGC----------------------------------ATTCGCCTGACATTCGGCGA-----------------------------------------------------------------------------CT-----------------ATCTGG-----CTG-----TGT-----------TTT--CACTCTTCAGTTT------T-----------------CAGTCGT---------------------------------TCGCTGGCAGACGCGCC----------------GACAACGTGCGTCG----------------------CAGTC----------------GCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACGCGCC----------------GACAACGTG..................................................2011.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGCGCC----------------GACAACGTG..................................................1811.00100001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCGCC----------------GACAACGTGC.................................................1811.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT---------------------------------TCGCTGGCAGACGC..............................................................................1811.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC----------------GACAACGTGCGTCG----------------------CAGTC----------------..2211.00100100000000
droEre2
CAGTGGCAGC-------------------------------------------------------------------------------------------AGCAGCA----------------CGGCCAGCAGCAGTGCCTCCCACTTGCTG------------------------------------CAGCA------GCAG---------------------------------------------------------------------CAGCAGCAACAGCAGCA-----------------------------------------------GCAGCAACAGCAGC---AGCACCA----------GCAGCA------------------GCAAC------------AGGCACAGCAGCAGCAGCTG---------------------------------------------------ACCGC---------------------------------------------------------------C------CAT--------------------------------------------------------------------------------------------------------------------------------CCCAGCGACCCGAAGTCCTCGCCCGCCCTCCAGCTGA---------------------------TG---GCCGC-------------------------------------CTCCGCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................AACAGCAGC---AGCACCA----------GCAGCA------------------............................................................................................................................................................................................................................................................................................................................................................................................................................2240.2510000010
......................................................................................................................................................................................................................................................................................................................................................AACAGCAGC---AGCACCA----------GCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2011000000
.......................................................................................................................................................................................................................................................................................CAACAGCAGCA-----------------------------------------------GCAGCAACAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020101000
.................................................................................................................................................................................................................................................................................................A-----------------------------------------------GCAGCAACAGCAGC---AGCACCA----------....................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.0810001000
........................................................................................................................................................G------------------------------------CAGCA------GCAG---------------------------------------------------------------------CAGCAGCAACAGCAGCA-----------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100000
.......................................................................................................................................................................................................................................................................................CAACAGCAGCA-----------------------------------------------GCAGCAACAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000010
.............................................................................................................................................................................................CAGCA------GCAG---------------------------------------------------------------------CAGCAGCAACAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000010
...........................................................................................................................................................................................................................................................................................AGCAGCA-----------------------------------------------GCAGCAACAGCAGC---A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100
.........................................................................................................................................................................................................................................................................................ACAGCAGCA-----------------------------------------------GCAGCAACAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0511000000
.................................................................................................................................................................................................................................................................................CAGCAGCAACAGCAGCA-----------------------------------------------GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000
..................................................................................................................................................................................................................................................................................AGCAGCAACAGCAGCA-----------------------------------------------GCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510001000

Generated: 05/18/2015 at 02:33 AM