ID:

dmo_2357

 Coordinate:

scaffold_6680:5108964-5109065 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.5

Flybase annnotation

CDS [Dmoj\GI12949-cds]; exon [dmoj_GLEANR_12914:2]; exon [dmoj_GLEANR_12914:1]; CDS [Dmoj\GI12949-cds]; intron [Dmoj\GI12949-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------##################################################
CCTATGGCAGCAGCTCGACGGCTTTGATCAATGCCATGGGCTTGCCCAATGTCAGCGTTGCCAGCAGCAACCACAGCAACGCCAGCAGCGTCAGTGGCACCGGCAACGGCAGCAACAATAATAACAACAACAACAACAATGGCACACAGCAGATCCTCTTCCTGAGTCCGCCCATGGACTCCAACTGGCGTCGCTCCAACTC
*******************************************************************************.((...........(((.(((((....)))..............................)).)))...)).*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V049
head
 V056
head
............................................CCCAATGTCAGCGTTGCCAG.......................................................................................................................................... 20 0 1 1.00 1 1 0 0
......GCAGCAGCTCGACGGCTTT................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1
...............................................................................CGCCAGCAGCGTCAGTGGCACCGGC.................................................................................................. 25 0 1 1.00 1 1 0 0
........................................CTTGCCCAATGTCAGCGTTGCC............................................................................................................................................ 22 0 1 1.00 1 0 1 0
...................................................................................................................................AACAACAATGGCACACAGCA................................................... 20 0 1 1.00 1 1 0 0
........................................................................................................................................................................CGCTCGTGTACTCCAACTG............... 19 3 16 0.06 1 1 0 0

Anti-sense strand reads

GGATACCGTCGTCGAGCTGCCGAAACTAGTTACGGTACCCGAACGGGTTACAGTCGCAACGGTCGTCGTTGGTGTCGTTGCGGTCGTCGCAGTCACCGTGGCCGTTGCCGTCGTTGTTATTATTGTTGTTGTTGTTGTTACCGTGTGTCGTCTAGGAGAAGGACTCAGGCGGGTACCTGAGGTTGACCGCAGCGAGGTTGAG
***************************************************.((...........(((.(((((....)))..............................)).)))...)).******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body
....................................................................................................................................................................................GGTTGACCGCAGCGAGGTTGA. 21 0 1 1.00 1 0 1
.......................................................................................................................................................................GGCGGGTACCTGAGGTTGACC.............. 21 0 1 1.00 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6680:5108914-5109115 + dmo_2357 CCTATGGCAGCAGCT--------------------------------------------CGACG-------GCTTTGATCAATGC-CATGGGCTTGCCC--------------------------------------------A---ATGTC---AGCGTTGCCAG---CAGCAACCA---CA------------------GC------AACGCCA------------GCAGCGTCAGTGGCACCGG---------------------CAACGG------------------------C---A---G---CAACAA------TAATAACA---ACA-----A---------------------------------------C----------AAC---AACAATGGCACA--------------CAGCAGATCCTCTTCCTGAGTCCGC-------------------CCATG--------G--------------------------------------------A------------------------CTCCA---ACTGGCGTC----GCTCCAACTC
droVir3 scaffold_13049:6776788-6776971 + CCTACGGCAGCGGCTCA-------------------------------ACG-GGCGC--CGGCG-------GT-CTGATCAATGC-GATGGGCCTGCCC--------------------------------------------A---ACAGC---AGCAGCACAAG---TGGCA---------------------------------------------------------------------CCAG------------------------------------C------AGCAATA------ACAA---CAACAA------CAA---CA-----------A---------------------------------CAACAACAA-T------------AACAATGGCACA--------------CAACAGAACCTGTACTTGAGTCCGC-------------------CAATG--------G--------------------------------------------A------------------------CACAA---ATTGGCGCC----GTTCCAACTC
droGri2 scaffold_15110:6017543-6017756 - CCTATGGTGGC-------------------------------AATAGTGCA----GCTGGAGCT-------CT---CGTCAATGC-CATGGGTCTGCCC--------------------------------------------A---ACAGC---AACATTATCAG---CGGCAGCAA---CA------------------GC------ATTAGCA------------GCAACAACATAAGCACCAA---------------------CAACAA------CAGC---------------A------G---CAGCAA--------------------CAACAA---------------------------------------CAA-C------------AACAATGGCACACAACA-----ACAACAACAGAACCTCTATTTGAGTCCAC-------------------CCATG--------G--------------------------------------------A------------------------CACGA---ATTGGCGAC----GCTCCAATTC
droWil2 scf2_1100000004511:6238962-6239154 + AGCATCTCGAATGC--C--------------------GCCTCA------------TCCTCGTCG-------TC------------------GTCTTCAC--------------------------------------------A---GCATC---AGCAGCAGCAG---CAGCATCAA---CA------------------GC------AACATCA------------GCAGCAGCAGCAGCATCAG---------------------CAACAT--CAGC-------------------A------G---CATCAG--------------------CAACAT---------------------------------C----------------AACAACATCAA-------CAGCA---------------------------------TCAGCAG-------------------------------GCTCTG--------------------------------C-AACGCGAACGTGAA-----------CAATT---GCAGGCGACGCATGCTTCAGCAG
dp5 XL_group1a:7394335-7394515 + CCGCCGGCAGC-------------------------------AGC-G--CG-GGCAC--CAACG-------GA-ATG-TCCGTG--CATAAGA-TGGCC--------------------------------------------A---GCAATGGCAGCAGCAGCAA---CACCA---------------------------GCAACACCAGCAACA---------------G------------------------------------------------CAGCA---------------------G---CAGCAACAACAGCAACAGCA--------------------------GTAGTCGAAT-------------------CATCAGCAAA----------------AA-----------------------GTGC-------CGCAGCAAAAAGTCCAGCCCATCGTCG---------------------------------------------------------------------------------------------T----GCTCCTCCTC
droPer2 scaffold_50:280235-280448 + dpe_1797 CCAACGGCAGC-------------------------------ATT-G--------CCCTCGTCC-------TG---------CCC-CAGAGCCTGTCCC--------------------------------------------A---GCAGC---AGCAGCAGCAG---CACCAACAA---CAGCAACT--------GGCAGCAGC---CGCCGCA------------GCGGCAGCAGCAGCAGCAG---------------------CGGTCGTCCAGC-------------------A------G---CAGCAG--------------------CAACAG---------------------------------C----------------AGCAGCAGCAA-------CAGCA-----GCAACAACCGATGCTCGTATCGATT--------------------CCCCAGCGAACGGCCA-GCAC----------GGGAT-----------------------------------------------------------------C------CGCCAGCTC
droAna3 scaffold_13337:9360068-9360244 + GCAGCAGCTGGAGGCTAAGATCCAGAAGCAAAAGGCAGCGGCA------------GCTGCGGCG-------GC-----------------------------------------------------------------------------------ACAGCAACAG---CAGCA---------------------------GCAGGCCCTGCAGCA------------------------------G---------------------------------CAACAGCAGCAG---CA---ACAACAGCA---GCAG---------CAGCAACA---------------------------------------------------ACAG---------CAGCAA-------CAG-----------------GTGCGCTTGCT-----CAC--G----------------CAAAA--------G--------------------------------------------A------------------------CACAA---ACTGTACTC----ATTCC--ATT
droBip1 scf7180000396589:208339-208522 - CCAGCAGCAAC-------------------------------AGCAGCACG----------GCC-------AA-----------------------------------------------------CACCATCACAGTG---CGGCTGC------GGTGGCTGCAG---CAGCG---------------------------GCAGCTGCCG-TCCA---CCAGCA---GCAGCAGCAGGCGGCCCAG---------------------G------------------------------T------G---CAGCAG--------------------CAACAC---------------------------------C----------------AACAGCAACAA-------CAGCA---------------------------------------GCAGGTGGCTGCCGTCG-----------------------------------------------------CCATGGCGGCGATGGCCAATTTGT-------------------T----GCCACAACAG
droKik1 scf7180000302634:315474-315649 - CTTACGTCGGC-------------------------------AAC-A--GCAACTACC---ACG--------------------C-CATATGCCTT------------------------------------GACAGCG---CAGCAGC------AGCAGCAACAA---CCGCC---------------------------ACAACCTCCGTCACA---------------G------------------------------------------------CAGCAGCAGCAA---GC---ACACCAA---CAACAA---------CAACA---ACA------------------------------------------------ACAA---------CAACAA-------CAGCC---------------------------------ACCTCAA----------------------------------------CTGCTG-----------------------C-CC--------------ACA------CATCA---ATTTGC-AC----ACTTGTCTTC
droFic1 scf7180000454106:282039-282224 - GCTGCAGCAGCAGATCA--------------------------------------ACC----CG-------GACCTGATCGGAGCCCATCCCCATGCCC--------------------------------------------A---GCAGC---ACCAGCAGCAGGTGCGCCAGCAG---CA------------------GCAGC---AACCGCA------------------------ACAG------------------------------------CAGCAGCAGCAG------CAACAACAGCAGCAACAG------------CAACA---------------------------------------------------GCAG---------CAGCAA-------CAGCA---------------------------------------ACATCAGCCTGCGGTTG-----------------------------------------------------CCACTT--------------------------------TCCAGA----GGGCCAACTT
droEle1 scf7180000491249:7298835-7299018 + CCTGTGGCAGTGTGTTG-----------------------GTG------------GCCGCGATT-------GC-----------------------------------------------------CCT--GCGCCGCT---CAGC---CAACGCAACAGCAACAC---TAGCA---G---CA------------------GCAGC---AGCAGCAGCG---------GCAGAGGC---------------------------------AG--------C-------------AG---C---ATCAA---CAGGGA---------CAACA---TCA-----------------------ACCGCAGCAACAACGC-----GCA----------------------GGA--------------TACGGCATAAACGTCGCT-------CGTCGCAA----------------------------------------CGACG------------------------------------------------------------------GC----GCAGCAACAA
droRho1 scf7180000761121:205521-205707 + GCCCTAGCGGT-------------------------------AGC-GCACG-GCCATC---ACGGATTGCTGC-----------------------------------------------------CGTCG-----GTGCCGCA---ACAAC---AGCAGCAGCAG---CAACA---------------------------GCAACAGCAGCAGCA------------GCAGCAGCAA---------------------------------------------------------------CAACAGCAGCAGCAG------------CAACAGCA------------------------------------------------GCAG---------CAGCA----------GCAGCTGATCAACAACGGAGGCGTCTC--------CTCCGGAA--CGC--------CCACG----------------CT-------------------------------------------------------------GC------------TC----ATTGGCAACG
droBia1 scf7180000299102:1710234-1710436 + CCA-TGGCAGC----------------------------GGCA------------GCCGCGGCG-------GC-----------------------------------------------------CTTTAATGCAGCG---CAACAGC------AGCAGCAACAC---CAGCAGCAGCAGCA------------------GC------AACATCA------------CCAGCAGCAGCAACACCAGCAAGCG---------------CAATCC------CAGC---------------A------G---CAGCAG--------------------CAACAACAACAGCAGCAG---------------------C----------------AAC----------------AG-----------------------CAAT-------CGCAGCAGCAACTCCATGCCCTGGCCCA---GCA-ACACATGTTGC--------------------------------------------------------------------------A----GCTGCAGCCA
droTak1 scf7180000415773:203408-203602 - CAG-CAACAAC-------------------------------AGCAGCACG----------GCC-------AG-----------------------------------------------------CATCATCACAGTG---CGGCCGC------AGTGGCCGCTG---CAGCG---------------------------GCGGCAGCCG-TCCA---TCAGCAGCAGCAGCAGGCGCAGCACCAG------------------------------------C------AGCAACAAC------AC---CACCAG------CAG---CA-----------G---------------------------------CAGCAGCAA-C------------ATCA----------GCA---------------------------------------GCAGGTGGCGGCCGTTG-----------------------------------------------------CCATGGCGGCCATGGCCAATTTGT-------------------T----GCCGCAACAG
droEug1 scf7180000409615:364545-364728 + AAT----CAGCAG----------------------------------------------------------------------------------------------------------------------------AT---CAAC---AACTACAGCAATAACAA---CGGCA---GCGGTA------GCAGCAACAGCAGCAGCAATCA------------------------------TATGAGTGCAGGCAGTTTCTTCGGCGGCAA--------C-------------AG---C---AACAA--------------------------------------CAGTAATAGCAACAACCATACCAGCAA-------------------------TAGCAA-------CAGCA---------------------------------------ATA---CC----------------------------------------------------GATTATATGGCCA------------------------CGCCG---ACTACCGCT----TATGCGACAC
dm3 chr2R:6877525-6877704 - CCAAGAGC---------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAG---TAGCA---------------------------GCAACAGCAGCAATAGCA---------GCAGTAGC---A------------------------------G------------------------------CCACAGTAGCAGCAG------------CAGCATCA------------------------------------------------GCGG---------CAGC----------AGCGACC------------------------------A-----G----------C--CA--------------ACACACAGCAACATTCCGCGCAGCACCATCGTCCGCCTG---------ACGACGGCCAACGGGAAGCCAGGAGCGGCTGGCATC----AGTCTGGCCC
droSim2 3r:25280737-25280938 + CTCATGGGCAC-------------------------------CTGCCTGCT----GCCCGAG-G-------A----CATCAATTC-CCTGGACTCGACCACCTGCTCCACGACGGCCAGCGGCCAGCACTACCAG--------------------------------------------------------------------------AGCCCCA---------------GCAGCAGCAGCACCTC---------------------TGCACC--CAGC-------------AA---T---ACCAGTAGCAACAA------------CAACA--------------------------GCTATGCCAACAGTCC---------------------------------------------------------------GCTCAGCCCGC-------------------TC------------ACACCCACTCCCACGGCAA-----------------------------------------------------------------CC----GCTAGCAATC
droSec2 scaffold_5:5646339-5646533 + ATGGCAGCGGC-------------------------------A------------GCCGCGGCG-------GC-----------------------------------------------------CTTCAATGCAGCG---CAACAGC------AGCAACAACAG---CAGCAACAACAGCA------------------GCAACATCAACACCA---------------GCAGCAGCAACACCAG---------------------CAGTCG-----C-A---------------ACA------G---CAGCAG--------------------CAACAG---------------------------------C----------------AGC----------------AG-----------------------CAGT-------CGCAGCAGCAACTCCATGCCCTCGCGCA---GCA-GCACATGCTGCAACTGCAG-----------------------------------------------------------------CC----GCAACATCAC
droYak3 3R:2880923-2881108 - ATGGCAGCGGC-------------------------------A------------GCCGCGGCG-------GC-----------------------------------------------------CTTTAACGCAGCG---CAACAGC------AGCAGCAACAG---CAGCA---------------------------GCAACACCAGCACCA------------GCAGCAGCAGCAACACCAG---------------------CAGTCG-----C-A---------------ACA------G------CAG--------------------CAACAG---------------------------------C----------------AGC----------------AG-----------------------CAGT-------CGCAGCAGCAACTCCATGCCCTCGCGCA---GCA-GCACATGCTGCAACTGCAG-----------------------------------------------------------------CC----GCAACACCAC
droEre2 scaffold_4770:7389631-7389827 + CCA-TGGCAGC----------------------------GGCA------------GCCGCGGCG-------GC-----------------------------------------------------CTTTAATGCAGCG---CAGCAGC------AGCAGCAACAG---CAGCA---------------------------GCAGCACCAGCACCA------------GCAGCAGCAGCAACACCAG---------------------CAGTCG-----C-A---------------GCA------G---CAGCAG--------------------CAGCAA---CA-------------------------------------GCAG---CAGC----------------AG-----------------------CAGT-------CGCAGCAGCAACTCCATGCCCTCGCGCA---GCA-GCACATGCTGCAGCTGCAG-----------------------------------------------------------------CC----GCAACACCAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CCTATGGCAGCAGCT--------------------------------------------CGACG-------GCTTTGATCAATGC-CATGGGCTTGCCC--------------------------------------------A---ATGTC---AGCGTTGCCAG---CAGCAACCA---CA------------------GC------AACGCCA------------GCAGCGTCAGTGGCACCGG---------------------CAACGG------------------------C---A---G---CAACAA------TAATAACA---ACA-----A---------------------------------------C----------AAC---AACAATGGCACA--------------CAGCAGATCCTCTTCCTGAGTCCGC-------------------CCATG--------G--------------------------------------------A------------------------CTCCA---ACTGGCGTC----GCTCCAACTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................CCC--------------------------------------------A---ATGTC---AGCGTTGCCAG---.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
......GCAGCAGCT--------------------------------------------CGACG-------GCTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
...................................................................................................................................................................................................................CGCCA------------GCAGCGTCAGTGGCACCGG---------------------C.........................................................................................................................................................................................................................................................................................................................2511.001100000
............................................................................................CTTGCCC--------------------------------------------A---ATGTC---AGCGTTGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
........................................................................................................................................................................................................................................................................................................................................................................................................AAC---AACAATGGCACA--------------CAGCA.........................................................................................................................................................2011.001100000
droVir3
CCTACGGCAGCGGCTCA-------------------------------ACG-GGCGC--CGGCG-------GT-CTGATCAATGC-GATGGGCCTGCCC--------------------------------------------A---ACAGC---AGCAGCACAAG---TGGCA---------------------------------------------------------------------CCAG------------------------------------C------AGCAATA------ACAA---CAACAA------CAA---CA-----------A---------------------------------CAACAACAA-T------------AACAATGGCACA--------------CAACAGAACCTGTACTTGAGTCCGC-------------------CAATG--------G--------------------------------------------A------------------------CACAA---ATTGGCGCC----GTTCCAACTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGAGTCCGC-------------------CAATG--------G--------------------------------------------........................................................2011.001000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................................GCACAAG---TGGCA---------------------------------------------------------------------CCAG------------------------------------C------AGC.................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGAACCTGTACTTGAGTCC.......................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACA--------------CAACAGAACCTGTACTTGAGTC........................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
...............................................................G-------GT-CTGATCAATGC-GATGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACTTGAGTCCGC-------------------CAATG--------G--------------------------------------------A------------------------CACG...........................2611.001000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GCACA--------------CAACAGAACCTGTACTTGAGTC........................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................ATGC-GATGGGCCTGCCC--------------------------------------------A---ACAGC---AGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000100000000000000000000000000000000000000000000
........................................................................T-CTGATCAATGC-GATGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AA-T------------AACAATGGCACA--------------CAACA.........................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................GATGGGCCTGCCC--------------------------------------------A---ACAGC---AGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATG--------G--------------------------------------------A------------------------CACAA---ATTGGCGCC----..........2011.001000000000000000000000000000000000000000100000000000000000000000
.......................................................................GT-CTGATCAATGC-GATGGGCCTGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CA--------------CAACAGAACCTGTACTTGAGTC........................................................................................................................................2411.001000000000000000000000000000000000000000000100000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATG--------G--------------------------------------------A------------------------CACAA---ATTGGCGC...............2011.001000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................ATA------ACAA---CAACAA------CAA---CA-----------A---------------------------------CA.............................................................................................................................................................................................................21200.204004000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................G------------------------------------C------AGCAATA------ACAA---CAACAA------CAA---..............................................................................................................................................................................................................................................................22190.051000000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................AATA------ACAA---CAACAA------CAA---CA-----------A---------------------------------CAACA..........................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................AA------CAA---CA-----------A---------------------------------CAACAACAA-T------------AACAAT..................................................................................................................................................................................24200.051000000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................G------------------------------------C------AGCAATA------ACAA---CAACAA------CA..................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
CCTATGGTGGC-------------------------------AATAGTGCA----GCTGGAGCT-------CT---CGTCAATGC-CATGGGTCTGCCC--------------------------------------------A---ACAGC---AACATTATCAG---CGGCAGCAA---CA------------------GC------ATTAGCA------------GCAACAACATAAGCACCAA---------------------CAACAA------CAGC---------------A------G---CAGCAA--------------------CAACAA---------------------------------------CAA-C------------AACAATGGCACACAACA-----ACAACAACAGAACCTCTATTTGAGTCCAC-------------------CCATG--------G--------------------------------------------A------------------------CACGA---ATTGGCGAC----GCTCCAATTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................................TAGCA------------GCAACAACATAAGCACCAA---------------------CA........................................................................................................................................................................................................................................................................................................................2611.00101
...............................................................................................................................................................................................................................................................................................................................................................................................A-C------------AACAATGGCACACAACA-----ACAACAACA.........................................................................................................................................................2811.00110
............................................................................................................................................................ACATTATCAG---CGGCAGCAA---CA------------------GC------ATTA.................................................................................................................................................................................................................................................................................................................................................................................2711.00101
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAACA-----ACAACAACAGAAC.....................................................................................................................................................18160.06110
droWil2
AGCATCTCGAATGC--C--------------------GCCTCA------------TCCTCGTCG-------TC------------------GTCTTCAC--------------------------------------------A---GCATC---AGCAGCAGCAG---CAGCATCAA---CA------------------GC------AACATCA------------GCAGCAGCAGCAGCATCAG---------------------CAACAT--CAGC-------------------A------G---CATCAG--------------------CAACAT---------------------------------C----------------AACAACATCAA-------CAGCA---------------------------------TCAGCAG-------------------------------GCTCTG--------------------------------C-AACGCGAACGTGAA-----------CAATT---GCAGGCGACGCATGCTTCAGCAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................CA------------TCCTCGTCG-------TC------------------GTCTTCAC--------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTGAA-----------CAATT---GCAGGC.................2011.00100010
.....................................................................................................................................................................................................................TCA------------GCAGCAGCAGCAGCATCAG---------------------CAAC......................................................................................................................................................................................................................................................................................................................2611.00100001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTG--------------------------------C-AACGCGAACGTGAA-----------...............................1911.00100100
...............................................................................................................................................................................................................................................................................CAT--CAGC-------------------A------G---CATCAG--------------------CAACAT---------------------------------C----------------AACA..........................................................................................................................................................................................2611.00101000
................................................................................................CAC--------------------------------------------A---GCATC---AGCAGCAGCAG---C............................................................................................................................................................................................................................................................................................................................................................................................................................2140.25100010
...........................................................................................................................................................................................................................................................................................................................................................................................................AACATCAA-------CAGCA---------------------------------TCAGCA................................................................................................................................1970.14100100
.............................................................................................................................................................CAGCAGCAG---CAGCATCAA---CA------------------.............................................................................................................................................................................................................................................................................................................................................................................................20200.10200002
.....................................................................................................................................................................................CA------------------GC------AACATCA------------GCAGCAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................................25160.06100010
....................................................................................................................................................................................................................ATCA------------GCAGCAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................................18200.05101000
......................................................................................................................................................................................A------------------GC------AACATCA------------GCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................21200.05100010
.........................................................................................................................................................................................................GC------AACATCA------------GCAGCAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................24200.05100010
......................................................................................................................................................................................................................................AGCAGCAGCAGCATCAG---------------------CA........................................................................................................................................................................................................................................................................................................................19200.05100010
.........................................................................................................................................................................................................GC------AACATCA------------GCAGCAGCAG........................................................................................................................................................................................................................................................................................................................................................19200.05100010
......................................................................................................................................................................................A------------------GC------AACATCA------------GCAGCAGCAG........................................................................................................................................................................................................................................................................................................................................................20200.05100100
...............................................................................................................................................................GCAGCAG---CAGCATCAA---CA------------------.............................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
.....................................................................................................................................................ATC---AGCAGCAGCAG---CAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
..........................................................................................................................................................................................................C------AACATCA------------GCAGCAGCAG........................................................................................................................................................................................................................................................................................................................................................18200.05100010
......................................................................................................................................................................................A------------------GC------AACATCA------------GCAGCAGCAGCAG.....................................................................................................................................................................................................................................................................................................................................................23200.05100010
.................................................................................................AC--------------------------------------------A---GCATC---AGCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
......................................................................................................................................................................................................................CA------------GCAGCAGCAGCAGCATCAG---------------------C.........................................................................................................................................................................................................................................................................................................................22200.05100010
..........................................................................................................................................................................................................C------AACATCA------------GCAGCAGCAGCAG.....................................................................................................................................................................................................................................................................................................................................................21200.05100010
dp5
CCGCCGGCAGC-------------------------------AGC-G--CG-GGCAC--CAACG-------GA-ATG-TCCGTG--CATAAGA-TGGCC--------------------------------------------A---GCAATGGCAGCAGCAGCAA---CACCA---------------------------GCAACACCAGCAACA---------------G------------------------------------------------CAGCA---------------------G---CAGCAACAACAGCAACAGCA--------------------------GTAGTCGAAT-------------------CATCAGCAAA----------------AA-----------------------GTGC-------CGCAGCAAAAAGTCCAGCCCATCGTCG---------------------------------------------------------------------------------------------T----GCTCCTCCTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................CAACAACAGCAACAGCA--------------------------GTAGT.............................................................................................................................................................................................................................2212.0020100100000
.........................................................................................................................................................................................................................................................................................................................................A--------------------------GTAGTCGAAT-------------------CATCAGCAAA----------------AA-----------------------..................................................................................................................................................2311.0010100000000
..........C-------------------------------AGC-G--CG-GGCAC--CAACG-------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.......................................................................................................................................................................................................................................................................................................................................GCA--------------------------GTAGTCGAAT-------------------CATCA................................................................................................................................................................................................1811.0010100000000
.....................................................................................................................................................................................................................................................................................................................................CAGCA--------------------------GTAGTCGAAT-------------------CATCAGCAAA----------------...........................................................................................................................................................................2511.0010100000000
.....................................................GCAC--CAACG-------GA-ATG-TCCGTG--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.................................................................................................................................................................AGCAA---CACCA---------------------------GCAACACCA....................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
................................................................................................................................................................................................................................................................................................................................AGCAACAGCA--------------------------GTAGTCGA..........................................................................................................................................................................................................................1811.0010000100000
.......................................................................................ATAAGA-TGGCC--------------------------------------------A---GCAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................AGCAACAGCA--------------------------GTAGTCGAAT-------------------C....................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................GTAGTCGAAT-------------------CATCAGCA.............................................................................................................................................................................................1811.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCCAGCCCATCGTCG---------------------------------------------------------------------------------------------T----GCTC......2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................GCAACAGCA--------------------------GTAGTCGAAT-------------------C....................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................GCAACAACAGCAACAGCA--------------------------GTAGT.............................................................................................................................................................................................................................2311.0010100000000
............................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCA--------------------------GTAGTC............................................................................................................................................................................................................................2011.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-------CGCAGCAAAAAGTCCAGCCCAC.................................................................................................................2411.0010010000000
.......................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAACAGCA--------------------------GT................................................................................................................................................................................................................................2120.5010100000000
..................................................................................................................................................................................................................................................................................................................G---CAGCAACAACAGCAACAGC.............................................................................................................................................................................................................................................................20200.2040400000000
......................................................................................................................................................................................................................CA---------------G------------------------------------------------CAGCA---------------------G---CAGCAACAAC......................................................................................................................................................................................................................................................................19200.1020000200000
.........................................................................................................................................................................................................................................................................................AGCA---------------------G---CAGCAACAACAGCAACAGCA--------------------------..................................................................................................................................................................................................................................25200.0510000100000
.........................................................................................................................................................................................................................................................................................AGCA---------------------G---CAGCAACAACAGCA..................................................................................................................................................................................................................................................................19200.0510000100000
............................................................................................................................................................................................................................................................................................A---------------------G---CAGCAACAACAGCAACAGCA--------------------------G.................................................................................................................................................................................................................................23200.0510100000000
..................................................................................................................................................................................................................................................................................................................G---CAGCAACAACAGCAACAGCA--------------------------G.................................................................................................................................................................................................................................22200.0510100000000
.......................................................................................................................................................................................................................A---------------G------------------------------------------------CAGCA---------------------G---CAGCAACAACAGCAA.................................................................................................................................................................................................................................................................23200.0510000100000
.............................................................................................................................................................................................................CACCAGCAACA---------------G------------------------------------------------CAGCA---------------------G---CAG.............................................................................................................................................................................................................................................................................21200.0510100000000
.......................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAACAGCA--------------------------..................................................................................................................................................................................................................................19200.0510100000000
................................................................................................................................................................................................................CAGCAACA---------------G------------------------------------------------CAGCA---------------------G---CAGCAAC.........................................................................................................................................................................................................................................................................22200.0510010000000
...............................................................................................................................................................................................................CCAGCAACA---------------G------------------------------------------------CAGCA---------------------G---CAGC............................................................................................................................................................................................................................................................................20200.0510000100000
..................................................................................................................................................................................................................................................................................................................G---CAGCAACAACAGCAACAGCA--------------------------..................................................................................................................................................................................................................................21200.0510000100000
..................................................................................................................................................................................................................................................................................................................G---CAGCAACAACAGCAACAG..............................................................................................................................................................................................................................................................19200.0510100000000
droPer2
CCAACGGCAGC-------------------------------ATT-G--------CCCTCGTCC-------TG---------CCC-CAGAGCCTGTCCC--------------------------------------------A---GCAGC---AGCAGCAGCAG---CACCAACAA---CAGCAACT--------GGCAGCAGC---CGCCGCA------------GCGGCAGCAGCAGCAGCAG---------------------CGGTCGTCCAGC-------------------A------G---CAGCAG--------------------CAACAG---------------------------------C----------------AGCAGCAGCAA-------CAGCA-----GCAACAACCGATGCTCGTATCGATT--------------------CCCCAGCGAACGGCCA-GCAC----------GGGAT-----------------------------------------------------------------C------CGCCAGCTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................AGCAG---------------------CGGTCGTCCAGC-------------------A------G---C...............................................................................................................................................................................................................................................................................2013.003300000
..........................................ATT-G--------CCCTCGTCC-------TG---------CCC-CAGAGCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000002
..................................................................................................................................................................................................................................................AGCAG---------------------CGGTCGTCCAGC-------------------A------G---CA..............................................................................................................................................................................................................................................................................2111.001010000
.........................................................................................................................................................................................................................................AGCAGCAGCAGCAG---------------------CGGTCGTCCAGC-------------------A------G---G...............................................................................................................................................................................................................................................................................2911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................A-----GCAACAACCGATGCTCGT................................................................................................................................................1911.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGCTCGTATCGATT--------------------CCC..................................................................................................................2111.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTCGTATCGATT--------------------CCCC.................................................................................................................2011.001010000
.....................................................................................................................................................................................................................................................AG---------------------CGGTCGTCCAGC-------------------A------G---CAGC............................................................................................................................................................................................................................................................................2011.001100000
.........................................................................................................................................................................................................................................AGCAGCAGCAGCAG---------------------CGGTC.....................................................................................................................................................................................................................................................................................................................1940.251001000
..............................................................................................GTCCC--------------------------------------------A---GCAGC---AGCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................2180.131001000
...........................................................................................................................................................AGCAGCAGCAG---CACCAACAA---CA...............................................................................................................................................................................................................................................................................................................................................................................................................22100.101001000
.................................................................................................................................................................................................................................................................................................................................................AACAG---------------------------------C----------------AGCAGCAGCAA-------CA..........................................................................................................................................................................19200.051010000
..................................................................................................................................................................................................................................................................................................................G---CAGCAG--------------------CAACAG---------------------------------C----------------AGCAGCAGC.....................................................................................................................................................................................23200.051010000
.........................................................................................................................................................................................................................................................................................................................CAG--------------------CAACAG---------------------------------C----------------AGCAGCAGCAA-------CA..........................................................................................................................................................................23200.051010000
.................................................................................................................................................................................................................................................................................................................................................AACAG---------------------------------C----------------AGCAGCAGCAA-------CAGCA-----..................................................................................................................................................................22200.051001000
..........................................................................................................................................................................................................................................................................................................................AG--------------------CAACAG---------------------------------C----------------AGCAGCAGCAA-------CAGCA-----..................................................................................................................................................................25200.051001000
.......................................................................................................................................................................................................................................................................................................................................................................................C----------------AGCAGCAGCAA-------CAGCA-----GC................................................................................................................................................................19200.051001000
..................................................................................................................................................................................................................................................................................................................................................ACAG---------------------------------C----------------AGCAGCAGCAA-------CAGCA-----GC................................................................................................................................................................23200.051010000
droAna3
GCAGCAGCTGGAGGCTAAGATCCAGAAGCAAAAGGCAGCGGCA------------GCTGCGGCG-------GC-----------------------------------------------------------------------------------ACAGCAACAG---CAGCA---------------------------GCAGGCCCTGCAGCA------------------------------G---------------------------------CAACAGCAGCAG---CA---ACAACAGCA---GCAG---------CAGCAACA---------------------------------------------------ACAG---------CAGCAA-------CAG-----------------GTGCGCTTGCT-----CAC--G----------------CAAAA--------G--------------------------------------------A------------------------CACAA---ACTGTACTC----ATTCC--ATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................AACA---------------------------------------------------ACAG---------CAGCAA-------CAG-----------------GTGCGCTTGC..............................................................................................................................................2711.001100000
.............................................................................................................................................................CAGCAACAG---CAGCA---------------------------GCAGGCCCTGCAGC...............................................................................................................................................................................................................................................................................................................................................................................2811.001010000
...............................AAGGCAGCGGCA------------GCTGCGGCG-------GC-----------------------------------------------------------------------------------ACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..............................................................................................................................................................................................................................................................................................................AACAGCA---GCAG---------CAGCAACA---------------------------------------------------ACA...................................................................................................................................................................................................22200.60121100100
................................................................................................................................................................................................................................................................................................GCAG---CA---ACAACAGCA---GCAG---------C................................................................................................................................................................................................................................................................20200.255050000
..................................................................................................................................................................................................................................................................................................AG---CA---ACAACAGCA---GCAG---------C................................................................................................................................................................................................................................................................18200.255050000
................................................................................................................................................................................................................................................................................................GCAG---CA---ACAACAGCA---GCAG---------CAGC.............................................................................................................................................................................................................................................................23200.204040000
..................................................................................................................................................................................................................................................................................................AG---CA---ACAACAGCA---GCAG---------CAGC.............................................................................................................................................................................................................................................................21200.153030000
.......................................................................................................................................................................................................................................................................................................CA---ACAACAGCA---GCAG---------CAGCAACA---------------------------------------------------ACAG---------C........................................................................................................................................................................................28100.101010000
..............................................................................................................................................................................................................................................................................................................AACAGCA---GCAG---------CAGCAACA---------------------------------------------------ACAG---------C........................................................................................................................................................................................24200.102110000
...................................................................................................................................................................................................................................................................................................................CA---GCAG---------CAGCAACA---------------------------------------------------ACAG---------CAGC.....................................................................................................................................................................................22200.102020000
........................................................................................................................................................................................................................................................................................................A---ACAACAGCA---GCAG---------CAGCAACA---------------------------------------------------ACAG---------C........................................................................................................................................................................................27110.091100000
..................................................................................................................................................................................................................................................................................................AG---CA---ACAACAGCA---GCAG---------CAGCAACA---------------------------------------------------AC....................................................................................................................................................................................................27120.081010000
............................................................................................................................................................................................................................................................................................AGCAGCAG---CA---ACAACAGCA---GCAG---------C................................................................................................................................................................................................................................................................24200.051000001
................................................................................................................................................................................................................................................................................................................CAGCA---GCAG---------CAGCAACA---------------------------------------------------ACA...................................................................................................................................................................................................20200.051100000
.....................................................................................................................................................................................................................................................................................................................................CAGCAACA---------------------------------------------------ACAG---------CAGCAA-------C...........................................................................................................................................................................19200.051010000
..........................................................................................................................................................................................................................................................................................ACAGCAGCAG---CA---ACAACAGCA---..............................................................................................................................................................................................................................................................................21200.051000001
........................................................................................................................................................................................................................................................................................CAACAGCAGCAG---CA---ACAACAGCA---..............................................................................................................................................................................................................................................................................23200.051100000
.............................................................................................................................................................................................................................................................................................................CAACAGCA---GCAG---------CAGCAACA---------------------------------------------------ACAG---------C........................................................................................................................................................................................25200.051000001
........................................................................................................................................................................................................................................................................................CAACAGCAGCAG---CA---ACAACAGCA---GCA...........................................................................................................................................................................................................................................................................26200.051010000
................................................................................................................................................................................................................................................................................................GCAG---CA---ACAACAGCA---GCAG---------CA...............................................................................................................................................................................................................................................................21200.051100000
............................................................................................................................................................................................................................................................................................................ACAACAGCA---GCAG---------CAGCAACA---------------------------------------------------......................................................................................................................................................................................................21200.051000010
..............................................................................................................................................................................................................................................................................................................AACAGCA---GCAG---------CAGCAACA---------------------------------------------------......................................................................................................................................................................................................19200.051000100
..................................................................................................................................................................................................................................................................................................................GCA---GCAG---------CAGCAACA---------------------------------------------------ACAG---------CAGC.....................................................................................................................................................................................23200.051010000
.................................................................................................................................................................................................................................................................................................................AGCA---GCAG---------CAGCAACA---------------------------------------------------ACAG---------C........................................................................................................................................................................................21200.051010000
...................................................................................................................................................................................................................CAGCA------------------------------G---------------------------------CAACAGCAGCAG---CA---AC........................................................................................................................................................................................................................................................................................22200.051010000
...................................................................................................................................................................................................................................................................................................G---CA---ACAACAGCA---GCAG---------CAGC.............................................................................................................................................................................................................................................................20200.051000010
.................................................................................................................................................................................................................................................................................................................AGCA---GCAG---------CAGCAACA---------------------------------------------------ACAG---------CAGCA....................................................................................................................................................................................25200.051000001
............................................................................................................................................................................................................................................................................................AGCAGCAG---CA---ACAACAGCA---GCAG---------CA...............................................................................................................................................................................................................................................................25200.051000001
droBip1
CCAGCAGCAAC-------------------------------AGCAGCACG----------GCC-------AA-----------------------------------------------------CACCATCACAGTG---CGGCTGC------GGTGGCTGCAG---CAGCG---------------------------GCAGCTGCCG-TCCA---CCAGCA---GCAGCAGCAGGCGGCCCAG---------------------G------------------------------T------G---CAGCAG--------------------CAACAC---------------------------------C----------------AACAGCAACAA-------CAGCA---------------------------------------GCAGGTGGCTGCCGTCG-----------------------------------------------------CCATGGCGGCGATGGCCAATTTGT-------------------T----GCCACAACAGSizeHit CountTotal NormTotal
No Reads
droKik1
CTTACGTCGGC-------------------------------AAC-A--GCAACTACC---ACG--------------------C-CATATGCCTT------------------------------------GACAGCG---CAGCAGC------AGCAGCAACAA---CCGCC---------------------------ACAACCTCCGTCACA---------------G------------------------------------------------CAGCAGCAGCAA---GC---ACACCAA---CAACAA---------CAACA---ACA------------------------------------------------ACAA---------CAACAA-------CAGCC---------------------------------ACCTCAA----------------------------------------CTGCTG-----------------------C-CC--------------ACA------CATCA---ATTTGC-AC----ACTTGTCTTCSizeHit CountTotal NormTotal
No Reads
droFic1
GCTGCAGCAGCAGATCA--------------------------------------ACC----CG-------GACCTGATCGGAGCCCATCCCCATGCCC--------------------------------------------A---GCAGC---ACCAGCAGCAGGTGCGCCAGCAG---CA------------------GCAGC---AACCGCA------------------------ACAG------------------------------------CAGCAGCAGCAG------CAACAACAGCAGCAACAG------------CAACA---------------------------------------------------GCAG---------CAGCAA-------CAGCA---------------------------------------ACATCAGCCTGCGGTTG-----------------------------------------------------CCACTT--------------------------------TCCAGA----GGGCCAACTTSizeHit CountTotal NormTotal
No Reads
droEle1
CCTGTGGCAGTGTGTTG-----------------------GTG------------GCCGCGATT-------GC-----------------------------------------------------CCT--GCGCCGCT---CAGC---CAACGCAACAGCAACAC---TAGCA---G---CA------------------GCAGC---AGCAGCAGCG---------GCAGAGGC---------------------------------AG--------C-------------AG---C---ATCAA---CAGGGA---------CAACA---TCA-----------------------ACCGCAGCAACAACGC-----GCA----------------------GGA--------------TACGGCATAAACGTCGCT-------CGTCGCAA----------------------------------------CGACG------------------------------------------------------------------GC----GCAGCAACAASizeHit CountTotal NormTotal
No Reads
droRho1
GCCCTAGCGGT-------------------------------AGC-GCACG-GCCATC---ACGGATTGCTGC-----------------------------------------------------CGTCG-----GTGCCGCA---ACAAC---AGCAGCAGCAG---CAACA---------------------------GCAACAGCAGCAGCA------------GCAGCAGCAA---------------------------------------------------------------CAACAGCAGCAGCAG------------CAACAGCA------------------------------------------------GCAG---------CAGCA----------GCAGCTGATCAACAACGGAGGCGTCTC--------CTCCGGAA--CGC--------CCACG----------------CT-------------------------------------------------------------GC------------TC----ATTGGCAACGSizeHit CountTotal NormTotal
No Reads
droBia1
CCA-TGGCAGC----------------------------GGCA------------GCCGCGGCG-------GC-----------------------------------------------------CTTTAATGCAGCG---CAACAGC------AGCAGCAACAC---CAGCAGCAGCAGCA------------------GC------AACATCA------------CCAGCAGCAGCAACACCAGCAAGCG---------------CAATCC------CAGC---------------A------G---CAGCAG--------------------CAACAACAACAGCAGCAG---------------------C----------------AAC----------------AG-----------------------CAAT-------CGCAGCAGCAACTCCATGCCCTGGCCCA---GCA-ACACATGTTGC--------------------------------------------------------------------------A----GCTGCAGCCASizeHit CountTotal NormTotal
No Reads
droTak1
CAG-CAACAAC-------------------------------AGCAGCACG----------GCC-------AG-----------------------------------------------------CATCATCACAGTG---CGGCCGC------AGTGGCCGCTG---CAGCG---------------------------GCGGCAGCCG-TCCA---TCAGCAGCAGCAGCAGGCGCAGCACCAG------------------------------------C------AGCAACAAC------AC---CACCAG------CAG---CA-----------G---------------------------------CAGCAGCAA-C------------ATCA----------GCA---------------------------------------GCAGGTGGCGGCCGTTG-----------------------------------------------------CCATGGCGGCCATGGCCAATTTGT-------------------T----GCCGCAACAGSizeHit CountTotal NormTotal
No Reads
droEug1
AAT----CAGCAG----------------------------------------------------------------------------------------------------------------------------AT---CAAC---AACTACAGCAATAACAA---CGGCA---GCGGTA------GCAGCAACAGCAGCAGCAATCA------------------------------TATGAGTGCAGGCAGTTTCTTCGGCGGCAA--------C-------------AG---C---AACAA--------------------------------------CAGTAATAGCAACAACCATACCAGCAA-------------------------TAGCAA-------CAGCA---------------------------------------ATA---CC----------------------------------------------------GATTATATGGCCA------------------------CGCCG---ACTACCGCT----TATGCGACACSizeHit CountTotal NormTotal
No Reads
dm3
CCAAGAGC---------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAG---TAGCA---------------------------GCAACAGCAGCAATAGCA---------GCAGTAGC---A------------------------------G------------------------------CCACAGTAGCAGCAG------------CAGCATCA------------------------------------------------GCGG---------CAGC----------AGCGACC------------------------------A-----G----------C--CA--------------ACACACAGCAACATTCCGCGCAGCACCATCGTCCGCCTG---------ACGACGGCCAACGGGAAGCCAGGAGCGGCTGGCATC----AGTCTGGCCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATTCCGCGCAGCACCATCG...................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCGCGCAGCACCATCGTC.................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................GCA---------GCAGTAGC---A------------------------------G------------------------------CCACAGTAGCAGCA...........................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................GC---A------------------------------G------------------------------CCACAGTAGCAGCAG------------CAGCATC.......................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................AATAGCA---------GCAGTAGC---A------------------------------G------------------------------CCACAGC..................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGC----------AGCGACC------------------------------A-----G----------C--CA--------------ACACACAGCAACATTCCGCG..............................................................................3511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAACGGGAAGCCAGGAGCGGCT....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................A---------------------------GCAACAGCAGCAATAGCA---------GCAGT.............................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................AGCAGCAGCAG---TAGCA---------------------------GCAACAGCA....................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................GCAATAGCA---------GCAGTAGC---A------------------------------G------------------------------C........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................A------------------------------------------------GCGG---------CAGC----------AGCGACC------------------------------A-----G----------C--..................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGAGCGGCTGGCATC----AGTCT.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCCAACGGGAAGCCAGGA..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTCCGCCTG---------ACGACGGCCAACGG....................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGGAAGCCAGGAGCGGCTGG..................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................GCGG---------CAGC----------AGCGACC------------------------------A-----G----------C--CA--------------A.................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCATCGTCCGCCTG---------ACGACGGCCAA.......................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AGAGC---------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAG---TAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...AGAGC---------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAG---TAGCA---------------------------.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCCAACGGGAAGCCAGGAGCGGC.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACC------------------------------A-----G----------C--CA--------------ACACACAGCAA.......................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---------ACGACGGCCAACGGGAAGCCAGGAG.........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................AGC---A------------------------------G------------------------------CCACAGTAGCAGCA...........................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................AGC---A------------------------------G------------------------------CCACAGTAGCAGCAG------------C.............................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................GC---A------------------------------G------------------------------CCACAGTAGCAGCAG------------CAGC..........................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................A------------------------------G------------------------------CCACAGTAGCAGCAG------------CAGC..........................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................AG------------CAGCATCA------------------------------------------------GCGG---------CAGC----------A..........................................................................................................................................................................1940.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................AGCAGCAG---TAGCA---------------------------GCAACAGC.....................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................GCAGCAG---TAGCA---------------------------GCAACAGCAG...................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CAG------------CAGCATCA------------------------------------------------GCGG---------CAGC----------AG.........................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................CAGCAG------------CAGCATCA------------------------------------------------GCGG---------CA.......................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................CAGCAG------------CAGCATCA------------------------------------------------GCGG---------CAG......................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AGCAG------------CAGCATCA------------------------------------------------GCGG---------C........................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GCAG------------CAGCATCA------------------------------------------------GCGG---------CAGC----------...........................................................................................................................................................................2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACCATCGTCCGCCTG---------GAC...............................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......GC---------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAG---TAGCA---------------------------GCAA.........................................................................................................................................................................................................................................................................................................................................................................................2280.1310000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CAAGAGC---------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAG---.............................................................................................................................................................................................................................................................................................................................................................................................................................18100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....AGC---------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAG---TAGCA---------------------------GC...........................................................................................................................................................................................................................................................................................................................................................................................21160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................AGCAGCAG---TAGCA---------------------------GCAACA.......................................................................................................................................................................................................................................................................................................................................................................................19160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AGC---------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAG---TAGCA---------------------------G............................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CTCATGGGCAC-------------------------------CTGCCTGCT----GCCCGAG-G-------A----CATCAATTC-CCTGGACTCGACCACCTGCTCCACGACGGCCAGCGGCCAGCACTACCAG--------------------------------------------------------------------------AGCCCCA---------------GCAGCAGCAGCACCTC---------------------TGCACC--CAGC-------------AA---T---ACCAGTAGCAACAA------------CAACA--------------------------GCTATGCCAACAGTCC---------------------------------------------------------------GCTCAGCCCGC-------------------TC------------ACACCCACTCCCACGGCAA-----------------------------------------------------------------CC----GCTAGCAATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................ATTC-CCTGGACTCGACCACCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200200000000000000
..........................................................CGAG-G-------A----CATCAATTC-CCTGGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00202000000000000000
.............................................................................ATCAATTC-CCTGGACTCGACCACCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
..................................................................................................................................ACCAG--------------------------------------------------------------------------AGCCCCA---------------GCAGC..........................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
......................................................................................CCTGGACTCGACCACCTGCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
..............................................................................TCAATTC-CCTGGACTCGACCACCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
.................................................................................................................................TACCAG--------------------------------------------------------------------------AGCCCCA---------------GCAGCAGCAGCACCT................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
...............................................................................CAATTC-CCTGGACTCGACCACCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
.................................................................................ATTC-CCTGGACTCGACCACCTGCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
..................................................................................................................................................................................................................................................................................................................GTAGCAACAA------------CAACA--------------------------GCT............................................................................................................................................................................................................................1811.00100100000000000000
....................................................................................................CCTGCTCCACGACGGCCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.................................................................................................................................................................................................................................................................................................................AGTAGCAACAA------------CAACA--------------------------GCT............................................................................................................................................................................................................................1911.00100100000000000000
............................................................................................CTCGACCACCTGCTCCACGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
....................................................................................C-CCTGGACTCGACCACCTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.....................................................................................................................................................................................................................................................................................................AA---T---ACCAGTAGCAACAA------------CAACA--------------------------GCT............................................................................................................................................................................................................................2511.00100000000000100000
.......................................................................................................................................................................................................................A---------------GCAGCAGCAGCACCTC---------------------TGCAC.....................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
droSec2
ATGGCAGCGGC-------------------------------A------------GCCGCGGCG-------GC-----------------------------------------------------CTTCAATGCAGCG---CAACAGC------AGCAACAACAG---CAGCAACAACAGCA------------------GCAACATCAACACCA---------------GCAGCAGCAACACCAG---------------------CAGTCG-----C-A---------------ACA------G---CAGCAG--------------------CAACAG---------------------------------C----------------AGC----------------AG-----------------------CAGT-------CGCAGCAGCAACTCCATGCCCTCGCGCA---GCA-GCACATGCTGCAACTGCAG-----------------------------------------------------------------CC----GCAACATCACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACTCCATGCCCTCGCGCA---GCA-....................................................................................................2611.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTCCATGCCCTCGCGC............................................................................................................1911.0010010
..................................................................................................................................................................................................................................................................................................................................................ACAG---------------------------------C----------------AGC----------------AG-----------------------CAGT-------CGCAGC.................................................................................................................................2030.3310010
.................................................................................................................................................................................................................................................................................................................................................AACAG---------------------------------C----------------AGC----------------AG-----------------------CAGT-------CGCA...................................................................................................................................1930.3310010
....................................................................................................................................................................................................................................................................................................................................................AG---------------------------------C----------------AGC----------------AG-----------------------CAGT-------CGCAGC.................................................................................................................................18180.0610010
..........................................................................................................................................G---CAACAGC------AGCAACAACAG---CAGCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510010
.................................................................................................................................................CAGC------AGCAACAACAG---CAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510010
................................................................................................................................................ACAGC------AGCAACAACAG---CAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................21200.0511000
...............................................................................................................................................AACAGC------AGCAACAACAG---CAGCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510010
.................................................................................................................................................................AACAG---CAGCAACAACAGCA------------------GCAACA.......................................................................................................................................................................................................................................................................................................................................................................................25200.0510010
.................................................................................................................................................................AACAG---CAGCAACAACAGCA------------------GCAAC........................................................................................................................................................................................................................................................................................................................................................................................24200.0510010
droYak3
ATGGCAGCGGC-------------------------------A------------GCCGCGGCG-------GC-----------------------------------------------------CTTTAACGCAGCG---CAACAGC------AGCAGCAACAG---CAGCA---------------------------GCAACACCAGCACCA------------GCAGCAGCAGCAACACCAG---------------------CAGTCG-----C-A---------------ACA------G------CAG--------------------CAACAG---------------------------------C----------------AGC----------------AG-----------------------CAGT-------CGCAGCAGCAACTCCATGCCCTCGCGCA---GCA-GCACATGCTGCAACTGCAG-----------------------------------------------------------------CC----GCAACACCACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................G-----C-A---------------ACA------G------CAG--------------------CAACAG---------------------------------C----------------AGC----------------AG-----------------------CAGT-------CG.....................................................................................................................................2811.00100000010000
...............................................................................................................................................................GCAACAG---CAGCA---------------------------GCAACACCAGC..................................................................................................................................................................................................................................................................................................................................................................................2320.50100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACTCCATGCCCTCGCGC............................................................................................................2120.50100100000000
..................................................................................................................................................................................................................................................................................................................................................ACAG---------------------------------C----------------AGC----------------AG-----------------------CAGT-------CGCAGCA................................................................................................................................2130.33100000010000
..................................................................................................................................................................................................................................................................................................................G------CAG--------------------CAACAG---------------------------------C----------------AGC----------------AG-----------------------CAGT-------C......................................................................................................................................2130.33100000010000
................................................................................................................................................................................................................................................................................................................................................CAACAG---------------------------------C----------------AGC----------------AG-----------------------CAGT-------CGC....................................................................................................................................1970.14101000000000
.............................................................................................................................................................................................................CACCAGCACCA------------GCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................20110.09101000000000
................................................................................................................................................................CAACAG---CAGCA---------------------------GCAACACC.....................................................................................................................................................................................................................................................................................................................................................................................19190.05101000000000
.......................................................................................................................................................................................................................................................................................C-A---------------ACA------G------CAG--------------------CAACAG---------------------------------C----------------AGC----------------A..........................................................................................................................................................................20200.05100010000000
droEre2
CCA-TGGCAGC----------------------------GGCA------------GCCGCGGCG-------GC-----------------------------------------------------CTTTAATGCAGCG---CAGCAGC------AGCAGCAACAG---CAGCA---------------------------GCAGCACCAGCACCA------------GCAGCAGCAGCAACACCAG---------------------CAGTCG-----C-A---------------GCA------G---CAGCAG--------------------CAGCAA---CA-------------------------------------GCAG---CAGC----------------AG-----------------------CAGT-------CGCAGCAGCAACTCCATGCCCTCGCGCA---GCA-GCACATGCTGCAGCTGCAG-----------------------------------------------------------------CC----GCAACACCACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................CCAG---------------------CAGTCG-----C-A---------------GCA------G---CAGC............................................................................................................................................................................................................................................................................2030.6720000110
..................................................................................................................................................................................................................................................ACCAG---------------------CAGTCG-----C-A---------------GCA------G---CAGC............................................................................................................................................................................................................................................................................2130.3310000100
..................................................................................................................................................................................................................................................ACCAG---------------------CAGTCG-----C-A---------------GCA------G---C...............................................................................................................................................................................................................................................................................1830.3310000010
................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CAGC----------------AG-----------------------CAGT-------CGCAGCAGC..............................................................................................................................2370.1410000010
..........................................................................................................................................................................................................................................................................................................................................................A-------------------------------------GCAG---CAGC----------------AG-----------------------CAGT-------CGCAGC.................................................................................................................................2190.1110000010
............................................................................................................................................................................CA---------------------------GCAGCACCAGCACCA------------GCAG..............................................................................................................................................................................................................................................................................................................................................................21100.1010000010
...................................................................................................................................................................................................................................................................................................................................................................................................G---CAGC----------------AG-----------------------CAGT-------CGCAGCAGC..............................................................................................................................20150.0710000010
.............................................................................................................................................................................................................................................................................AGTCG-----C-A---------------GCA------G---CAGCAG--------------------CAGC..................................................................................................................................................................................................................................................21160.0610000100
..................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGC----------------AG-----------------------CAGT-------CGCAGCA................................................................................................................................19170.0610000010
.................................................................................................................................................CAGC------AGCAGCAACAG---CAGCA---------------------------.............................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100
..........................................................................................................................................G---CAGCAGC------AGCAGCAACAG---CAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000
.........................................................................................................................................................................................................................................................................................................................CAG--------------------CAGCAA---CA-------------------------------------GCAG---CAGC----------------...........................................................................................................................................................................19200.0510100000
.................................................................................................................................................CAGC------AGCAGCAACAG---CAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010
....................................................................................................................................................C------AGCAGCAACAG---CAGCA---------------------------GC...........................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000
.......................................................................................................................................................................................................................................................................................C-A---------------GCA------G---CAGCAG--------------------CAGCAA---CA-------------------------------------GCAG---C..............................................................................................................................................................................................25200.0510000010
................................................................................................................................................................................................................CAGCACCA------------GCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................20200.0510000100
..........................................................................................................................................................................................................................................................................................................................AG--------------------CAGCAA---CA-------------------------------------GCAG---CAGC----------------AG-----------------------..................................................................................................................................................20200.0510001000

Generated: 05/18/2015 at 02:27 AM