ID:

dmo_2355

 Coordinate:

scaffold_6680:4940030-4940326 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dmoj\GI12401-cds]; exon [dmoj_GLEANR_12413:5]; CDS [Dmoj\GI12401-cds]; exon [dmoj_GLEANR_12413:6]; intron [Dmoj\GI12401-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATGCAGCCAGAAATCCGGCGGATTATATTAAATTCATGGCGACCTACCAGGTAGAGAGTCATATTGACCAAGGCTAGCCGACCTTTTGTTTGTTATTTAATTTACTTTTCGGTTTGATTTCGATTTTGATTTCCATATGAGTTTCTTTTTTATTATTTTTATCTTAGAATGCTTGCAGTCAGAGCACAATTCCTGTTATACGTCCGCACCATCACAGGCACGGAGATCACCGTAAAAGAGTAGGTCTCGATTTTTATTTGATTCATTTCCAATATAATTTTAAATCGATTATTGGTATCCATAACCATAATTATTTGTCGATTCCTAACTTCTTGCTATCTTTGCAGAGCCGAAGATCTAGGCGGCAGGAGAACGAGTTGTGGAAGGGCATAGACCA
**************************************************..(((((.((((((.((.(((((..((((((......(((........))).......)))))).........)))))...)).)))))).))))).......((((((......)))))).((((((....((((.....(((((.................))))).((((......))))....(((((((..(((((...((((.((......)).)))).......((((.((((((.(((.......))))))))))))))))))..))).))))..))))....))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 M046
female body
 M060
embryo
..................................................................................................................................................................................................................................................................................................................................................................................GAACGAGTTGTGGAAGGGCATAGACCA 27 0 1 1.00 1 1 0 0
......CCAGAAATCCGGCGGATTAT................................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0
...........................................................................................................................................................................................................................................................TATTATTAGATTCATATCCAAT............................................................................................................................ 22 3 8 0.38 3 1 2 0
............................................................................................................................................................................................................................................................ATTATTAGATTCATATCCAATA........................................................................................................................... 22 3 6 0.33 2 0 2 0
...........................................................................................................................................................................................................................................................TATTATTAGATTCATATCCAATA........................................................................................................................... 23 3 3 0.33 1 0 1 0
..............................................................................................................................................................................................................................................................TATTAGATTCATATCCAATA........................................................................................................................... 20 2 6 0.33 2 0 2 0
.............................................................................................................................................................................................................................................................TTATTAGATTCATATCCAATA........................................................................................................................... 21 2 4 0.25 1 0 1 0
...............................................................................................................................................................................................................................................................ATTAGATTCATATCCAATAT.......................................................................................................................... 20 2 6 0.17 1 0 1 0
.............................................................................................................................................................................................................................................................................................................................................................CCGACGATCTAGGTGGTA.............................. 18 3 10 0.10 1 0 0 1
...............................................................................................................................................................................................................................................................ATTAGATTCATATCCAATA........................................................................................................................... 19 2 12 0.08 1 0 1 0
.................................................................................................................................................................................................................................................................................................................................................................................AGAATGAGATGTGAAAGGGC........ 20 3 12 0.08 1 1 0 0
..............................................................................................................................................................................................................................................................TATTAGATTCATATCCGATAT.......................................................................................................................... 21 3 20 0.05 1 0 1 0
..............................................................................................................................................................................................................................................AGTAGGGGACGATTTTTAT............................................................................................................................................ 19 3 20 0.05 1 0 1 0
............................................................................................................................................GTGTCTTTTGTATTATGTTTAT........................................................................................................................................................................................................................................... 22 3 20 0.05 1 0 1 0

Anti-sense strand reads

TACGTCGGTCTTTAGGCCGCCTAATATAATTTAAGTACCGCTGGATGGTCCATCTCTCAGTATAACTGGTTCCGATCGGCTGGAAAACAAACAATAAATTAAATGAAAAGCCAAACTAAAGCTAAAACTAAAGGTATACTCAAAGAAAAAATAATAAAAATAGAATCTTACGAACGTCAGTCTCGTGTTAAGGACAATATGCAGGCGTGGTAGTGTCCGTGCCTCTAGTGGCATTTTCTCATCCAGAGCTAAAAATAAACTAAGTAAAGGTTATATTAAAATTTAGCTAATAACCATAGGTATTGGTATTAATAAACAGCTAAGGATTGAAGAACGATAGAAACGTCTCGGCTTCTAGATCCGCCGTCCTCTTGCTCAACACCTTCCCGTATCTGGT
**************************************************..(((((.((((((.((.(((((..((((((......(((........))).......)))))).........)))))...)).)))))).))))).......((((((......)))))).((((((....((((.....(((((.................))))).((((......))))....(((((((..(((((...((((.((......)).)))).......((((.((((((.(((.......))))))))))))))))))..))).))))..))))....))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V056
head
 V110
male body
...............................................................................................................................................................................................................................................................TAATCTAAGTATAGGTTATA.......................................................................................................................... 20 2 6 1.17 7 4 2 1
............................................................................................................................................................................................................................................................TAATAATCTAAGTATAGGTTATA.......................................................................................................................... 23 3 5 1.00 5 5 0 0
..............................................................................................................................................................................................................................................................ATAATCTAAGTATAGGTTATA.......................................................................................................................... 21 2 4 1.00 4 4 0 0
...............................................................................................................................................................................................................................................................TAATCTAAGTATAGGTTAT........................................................................................................................... 19 2 12 0.33 4 4 0 0
............................................................................................................................................................................................................................................................TAATAATCTAAGTATAGGTTAT........................................................................................................................... 22 3 6 0.17 1 1 0 0
............................................................................................................................................................................................................................................................CAATAATCTAAGTATAGGTTATA.......................................................................................................................... 23 3 6 0.17 1 1 0 0
................................................................................................................................................................................................................................................................AATCTAAGTATAGGTTATA.......................................................................................................................... 19 2 19 0.11 2 2 0 0
...............................................................................................................................................................................................................................................................TAATCTAAGTATAGGTTATAC......................................................................................................................... 21 3 17 0.06 1 1 0 0
......................................................................................................................................................................CGTAGGAACGTCAGTCTCA.................................................................................................................................................................................................................... 19 3 17 0.06 1 1 0 0
...........................................................................................................................................................................................................................................................ATAATAATCTAAGTATAGGTT............................................................................................................................. 21 3 20 0.05 1 1 0 0
.........................................................................................................................................................................................................................................................TAGAAAGAAACTAAGTAA.................................................................................................................................. 18 2 20 0.05 1 0 0 1
............................................................................................................................................CACAGAAAACATAATACAAATA........................................................................................................................................................................................................................................... 22 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6680:4939980-4940376 - dmo_2355 ATGCAGCCAGAAATCCGGCGGATTATATTAAATTCATGGCGACCTACCAGGTAGAGAGT-CATATTGACCA--AGG---CT-AGCCG--------------------------------------A--CCT--TTT-----------------------G-TTTGTTATT--TAATTTA-CTTTTCGGTTTGATTTCGATTTTGAT---T----------------TCCATATGAGTTT--CTTTT-TTATTATT------TTTATCTTAGAATGCTTGCAGTCAGAGCACAATTCCTGTTATACGTCCGCA-----CCATCA-CA----G----GCAC-GGAGATCACCGTAAAAGAGTAGGTCTCGATTTTTA--TTTGAT--------T--------------C--ATTTCCAATATAATTT---------TAAA----TC--GA----TTA--------------------TTGGTATC--C----------------------------ATA---ACCAT-------AATTATTTGTCGATTCCTAACTTCTTGCTATCTTTGCAGAGCCGAAGATCTAGGCGGCAGGAGAACGAGTTGTGGAAGGGCATAGACCA
droVir3 scaffold_13049:6622868-6623269 - dvi_22455 ACGTCGCACGAAATCCGCCGGAATATGTAAAATTCATGACGGTCTACCAGGTAGCCATA-A----TCACAATAGGT---CC-AGCCC--------------------------------------T--TCC--TTG-----ACTTTCGTTTTTG----------CCTGG-----------CTTTT------GATT--TCTATGATT---T----------------TTCCCTTA---TG--ATATT-CTTTTTG--------TACTCGTAGAACGCTTGCAATCAAAGCCAGATTCCCGTTTGCCGTAATCT-CAATTA----TAATGCACAGAGTTCTGGGTC-AAATCGCCGAAGAGTAGGTTAT-AT---TTTGT-T--------TATTT-C--TT---AATTT--AATTGCAAC------------A-----------TT--AGCCAAATGTAGATAAATATACCCA----AGTCTGGG--C-----------TCTCGTT-TAAGTGCTTGGCT----TAT--------ACTT---CT----G---A--------T-GATTTTATAGAATCGCCGTGCCAGACGACAGGAACACGAGCTGTGGAAGGGCATTAATCA
droGri2 scaffold_15110:6155083-6155473 + ATGTTGCACGAAATCCAGCGGATTATGTCAAGTTCATGACAGTCTATCAGGTAGCCTCA-A----TTAATGCAGCAGTAACACAATC--------------------------------CCTGCAACATTT--TTT----------AGTTGTAGCGTGGA-----TATTT--A----TTTTGTTTGGTTTCCAT---CAGT---TT---T----------------TTTATTTT-----------G-AATCTTATAATTTTGCTCACTTAGAAAGCTTGCAAACAAGGCAAAATTCCCGTAAGCCGCAAACC-ACTTAA----AGATGATCAAAATCCT-GACCACCGTCGCAGAAAAGTATGTTTTTAT---TT--TAT--------TATCC----------------A--TCCGATAG--------------------------------------------------------------A--C--AAATATAGATAATGTT-GTTGAGCTCGGTTT-A--AT--------GCTC---CC----G---A--------TCATTTTCGCAGGCTCGCCGTGCCAAGCGTCAGGAGGATGAGCTGTGGAAGGGCATTGATCA
droWil2 scf2_1100000004511:7873335-7873739 + dwi_641 ATACGACTAGAAATCCAGCTGATTATGTTAAATTTATGACCGTCTACCAGGTGAGTCAC-TGTA------------------AACTCTGTGTCTGTGTCTGTGTGTGTGTGTGTCATTTGC--CAT--TTT--ATG-----------------------A-TTTGTAGTTGTT----TTTCTTTGGGTTTTTAT---GATTT---------------------------TTTTG---TG--TTTTG-AAACTTAT-------TTTATTTAGAAAGCTTGCAATCAAAGTCATATACCCGTAACCCGACGTCC-ACGTAG----CGAGCTGCTAGCTCAT-GGTCAACACCATAGAAAAGTATGTTTT-AT---GA--TTT--------TTCTT-C--AT-----TTTT-----------------CCCTCC------CACTGCC--AA----------------------C----TTTGAAGAGAGAGAGAGAGAG---------------------AGAATACT-AATTTTCATAA---CT----T---T--------T-CATTCAAAAGACTCGTCGTAGCAAACGTCAGGAGGATGAACTTTGGAAGGGCATCGATCA
dp5 XR_group8:4238905-4239267 + ATGTGGCTAGAAATCCAGCGGACTATGTCCGTTTCATGGCCGGCTACCAGGTGCGGCAC-CTTCT-----------------CACTC--------------------------------TC--CAA--CTT--TTC-----------------------A-GTTGTAGTT--T----TCTCTTTCAGTTTTTAT---GATTTGCGT---T----------------TTTATTTGTATTT--GTTTC-GCATCGA--------TCCATGTAGAAAGCTTGCCGACAGACCCAGATCCCAGTGACCAAAAGTGCCCGCCGCGAGA-GC----G---------GCTCAGAAA-AAAAGAAAGTATGTTTCT-T---GG--CTTAAT--------T--------------T--TCTTCCAATTTACGTT--------------------------------------------------TGAATGTG--CGAAAAGC----------AT-------T----TG-AATCTA------AATAATGAGAAAATT---T-----------TCTACGTAGAATCGCCGCGCCAAGCGCCAGGAAGATGAGCTATGGAAAGGCGTCGACCA
droPer2 scaffold_29:469651-470013 + ATGTGGCTAGAAATCCAGCGGACTATGTCCGTTTCATGGCCGGCTACCAGGTGCGGCAC-CTTCT-----------------CACTC--------------------------------TC--CAA--CTT--TTC-----------------------A-GTTGTAGTT--T----TCTCTTTCGGTTTTTAT---GATTTGCGT---T----------------TTTATTTGTATTT--GTTTC-GCATCGA--------TCCATGTAGAAAGCTTGCCGACAGACCCAGATCCCAGTGACCAAAAGTGACCGCCGCGAGA-GC----G---------GCTCAGAAA-AAAAGAAAGTATGTTTCT-T---GG--CTTAAT--------T--------------T--TCTTCCAATTTACGTT--------------------------------------------------TGAATGTG--CGAAAAGC----------AT-------T----TG-AATCTA------AATAATGAGAAAATT---T-----------TCTACGTAGAATCGCCGCGCCAAGCGCCAGGAAGATGAGCTATGGAAGGGCGTCGACCA
droAna3 scaffold_13337:7722888-7723263 + ATGTGGCCAGGAATCAGCCGGACTATGTCCGATTTATGGCCATCTACCAGGTATGCCC--TGGAC---------------TTTACTC--------------------------------T--------TTT--TTC-----A------TTTCCCCAC--A-GAAG--CC----------ACTTTTATTTTTTGT---TCTTTTTAT---T----------------ATTTCTTGA--TC--ATTTCCCCATATGA-------TTTTGGTAGAAATCTTGTAATCGGACCTCCATACCCGTCACGCGAGGTTC-GGTTGG----AAATATGCGATCCGCT-GAACAACGCCCTAGAAAAGTATGTTTTT-G---GT--TTTTAT---------ATTCCACTATTATTT--AG-----------TTCCAATCGCT---------TT--GG----------------------TAATTTAAGTTTA--T----------------------------AAA---T-ATT-------AATAT---TT----T---A--------T-TAATTTATAGACTCGTCGTGCCAAACGCCAGGAGGATGAACTTTGGAAGGGCATAGACCA
droBip1 scf7180000395543:388449-388832 + ATGTGGCCAGGAATCAGCCGGACTATGTGCGATTCATGGCCATCTACCAGGTATGCCCG-GGACT-----------------TCAAA----C-------------------------------------CTTTATC-----------------------A-G--GAATC----------AGTTTCGTTTTTTAT---TATTTTTAT---TATTTATTT--------ATTTCTTGA--TC--ATTTCCATATATGA-------TTTTGGTAGCAATCTTGTAATCGGACCTCCATTCCCGTCACGCGAAGTTC-GGTGGG----GACTATGCGATCCTCT-GAACAACGCCAAAGAAAAGTATGTTTTTTTTATGT--TTT--------TAATA-TCCAATATTATTT--AGTTCCAATCT---------------AAAGATATA--AT----------------------T----AATGTTTA--T---------------------AGAACTTG------AAAT-------AATTC---GG----A---A--------T-ATATTTACAGTCACGCCGTTCCAAACGCCAGGAGGATGAACTCTGGAAGGGCATAGATCA
droKik1 scf7180000302486:1415614-1415975 - ATGTGGCCAGGAATTCGCCAGATTATGTGCGATTCATGGCTGTGTATCAGGTAGGCGCT-CTCGG-----------------GACTT--------------------------------TA--GAT--TGC---------------------------------------------------TTTATTTTTAGTT--TATTTT-A----C----------------ATTTTTCGT--TTGTGTTTC-CAATTGGC-------TTTTGGTAGAAAGCTTGTTCCCAGCGCACAATTCCCGTGACCCGAAGTTC-AGTCGG----AGAATTCTATTCCGAA-AAACAGCGCCCCAAAAAAGTATGTTTATTTTATGT--TTTTATGCTTTTATTT----------------A----------T-CCCTTATTGTTTGTGGGATTTCGGGG----------------------T----TAAATGAG-TC----------------------------AGA---GAGCT-------AC--A---GC----C---T--------C-CTCCTTGCAGTCTCGCCGTGCCAAACGCCAGGAGGATGAGCTGTGGAAGGGCATTGACCA
droFic1 scf7180000451564:174760-175122 + ATGTGGCCCGGAATTCACCCGAATATGTCAGATTCATGGCCGTTTACCAGGTATGACTCCTGGCC-----------------AGCTC--------------------------------C--------CCT--TTC-----------------------A-TTTGCAGT-----------CTTTTAGTTTTGATT--TACTATTAT---T---------------TGTTATTTG---TT--ATTTC-TAATTGGC-------TTTTGGTAGAAGGCTTGCAACCAGAAATCAATCCCCGTTACCCGAAGTTC-CGTTGG----AACAATGCATTCCGTT-GAAAGGCGCCCAAAGAAAGTATGTTTT-AT---TA--TTT--------TTT-ATTTTAATCTTATTT--AG---------A-TTCTCATTTTA-------------AA----------------------T---TTAAGTGAA--T----------------------------GGA---ATACT-------AACTA---CT--------A--------A-TTATTTACAGTCTCGCCGTGCCAAACGTCAGGAAGATGAGTTGTGGAAGGGCATTGACCA
droEle1 scf7180000490564:159705-160061 - ATGTGGCCAGAAATCATCCCGACTATGTCCGTTTTATGGCCGTGTATCAGGTAAGTGGT-TAGAG---------------CCCATTC--------------------------------C--------ATT--TTC-----------------------A-TTTGTAGC-----------CCTTTAGTTTTGATT--TA------T---T----------------ATTATTTG---TC--ATTTT-CAATTGGC-------TTTTGGTAGAAGGCTTGCAGCCAAAGCACAATTCCCGTAACCCGAAGTTC-CGTCGG----AACAAACTGCTCCCTT-GATCGGCGCCAAAGAAAAGTATGTTTT-AT---GG--TTT--------TATTA----------------C----------A-ATAGTAATATGTTGGAGATATC--CG----------------------T----TAAGTAAG--C----------------------------GGGTT-AATGTA------AATAA---TC----A---A--------C-TTACTTACAGTCTCGCCGTGCCAAACGTCAGGAAGATGAACTGTGGAAGGGCATTGACCA
droRho1 scf7180000779332:748-1099 + ATGTGGCCAGGAATCCGCCGGATTATGTCCGATTCATGGCCGTTTACCAGGTAAGTAGT-TAGAT-----------------AGGCC-----------------------------------------TTT--TTT-----------------------A-TTTGTAGT-----------CTTTTAGTTTCGAGT--TA------T---T----------------ATTATTTG---TT--ATTTC-TAATTGGC-------TTTTGGTAGAAGGCTTGCAACCAGAGCACAATTCCCGTAACCCGAAGTTC-CGTCGG----AACAATTCGCCCCCTT-GATCAGCGGCAAAGAAAAGTATGTTTT-AT---GG--TTT--------TATTA----------------C----------G-TCAATATTATTTCTCAGATCCT--AG----------------------T----TAAGTAAG--C----------------------------AGA---AAAAT-------AAAAA---CT---TA---A--------T-CTACTTGCAGTCTCGTCGTGCCAAACGCCAGGAGGATGAATTGTGGAAGGGCATTGACCA
droBia1 scf7180000300910:2279783-2280164 + ATGTGGCCAGGAATTCGCCCGATTATGTCCGTTTCATGGCCGTTTACCAGGTATGCCCC-AGGCT-----------------AACTC--------------------------------CT--CTA--CTT--TTCTGCTAATTTTAGTTTT-GTTTTA-------------------------------TTAT---TTATTTATT---TATTTATTTATTTATTTATTATTTC---CT--ATTTT-TTATTGGC-------T-TTGGTAGAAGGCTTGTAACCAGAAAAATATCCCCGTAACCCGAAGTTC-CGTCGG----AACAACGAGTTCCATT-GATCGGCGACCAAGAAAAGTATGTTTTTAT---GG--TTT--------TATTA----------------G----------T-ATCGTATTATTTCTAAGATGTTGTAG----------------------T----AGAGTGAG--C----------------------------AGT---GACCT-------AAGAT---TC----A---A--------C-CTTCTTACAGTCTCGTCGTGCCAAACGTCAGGAAGACGAGCTCTGGAAGGGCATTGACCA
droTak1 scf7180000415356:277982-278340 + ATGTGGCCAGGAATTCACCGGATTATGTCCGTTTCATGGCCGTCTACCAGGTATGCGAA-TGGTT-----------------AACCC-----------------------------------------TTT--TTC-----------------------A-TTTTGAGT-----------CTTTTCGTTTTGATT--TA------T---T----------------ATCATTTG---TT--ATTTT-CATTTGGC-------TTTTGGTAGAAAGCTTGTAATCAGAGCAATATTCCCGTTACCCGAAGTTC-CGTCGG----AACATTAACTTCAACT-GATCGGCGCCAAAGAAAAGTATGTTTTCAT---TA-GTTT--------TATTT----------------C----CTATTTA-TTGTAATTATTTTGGAGATCTT--GG----------------------T----CAAGTCAG--C----------------------------AGG---AGTAT-------AAGAT---GT----A---T--------A-ATACTTTCAGTCTCGCCGTGCCAAACGCCAGGAAGATGAGCTGTGGAAGGGCATTGACCA
droEug1 scf7180000409467:138004-138358 - ATGTGGCCAGGAATTCTCCGGACTACGTCCGCTTCATGGCTGTTTACCAGGTTCGCAAT-TGGTT-----------------TGCTT----A-------------------------------------CT-------------------------------TTGCAGC-----------TTTTTAGTTTTTAT---TATTTATATTATT----------------ATTATTTG---TT--ATTTT-TAATTGGC-------TTTTGGTAGAAGGCTTGTAACCAGAGCAATATTCCCGTAACCCGAAGTTC-CGTCGA----AAAATTGCGTACCGTT-GATCGGCGTCAGAGAAAAGTAGGTTTTTAT---AA--TTT--------TATTA----------------T----------C-ATCGTATTATTTCCGATATCTC--AG----------------------T----TAAATGAA--A----------------------------AGA---TAT-T-A-----ATGAT---TT----A---A--------T-AAACTTTTAGTCTCGTCGTGCCAAACGTCAGGAAGATGAGCTATGGAAGGGCATCGACCA
dm3 chr3L:8927191-8927554 - ATGTGGCCAGGAATTCGCCAGACTACGTTCGATTCATGGCCGTTTACCAGGTACGCAAC-TGGCT-----------------AGCTA----C-------------------------------------CT---TT-----------------------G-TTTGTAGT-----------CTTTTAGTTTTGATT--TATTTGATTTATT----------------ATTATTTA---TT--ATTTC-TAATTGGC-------TTTTGGTAGAAGGCTTGTAACCAGAGCACTATTCCTGTTACCCGAAGTTC-CGTTGG----AACAATGCGTACCACT-GATCGGCGGCCAAGAAAAGTATGTTTATAT---GG--TTT--------TTTTT------------TTTGA----------A-TTTTCATTATATGAAAGATGTC--AA----------------------T----TTAGTAAG--C----------------------------AGA---AAGCT-------AATCA---AT----A---A--------A-CTATTTGCAGTCTCGCCGTGCCAAACGTCAGGAAGATGAGCTGTGGAAGGGCATTGATCA
droSim2 3l:8710988-8711345 - dsi_19406 ATGTGGCCAGGAATTCGCCAGACTACGTTCGATTCATGGCCGTTTACCAGGTAAGTAAC-TGGCT-----------------CGCTA----C-------------------------------------CT--TT------------------------GTTTTTTAGT-----------CTTTTAGTTTTGATT--TATTTGTAT---T----------------ATTATTTG---TT--ATTTC-TAATTGGC-------TTTTGGTAGAAGGCTTGTAACCAGAGCACTATTCCTGTTACCCGAAGTTC-CGTTGG----AACAATGCGTACCACT-GATCGGCGGCCAAGAAAAGTATGTTTTTAT---GG--TTT--------TATTT----------------A----------A-TTTTCATTATATAAAAGATGTC--AA----------------------T----TAAGTAAG--C----------------------------AGA---AAGCT-------AATCA---AT----C---A--------A-CTATTTGCAGTCTCGTCGTGCCAAACGTCAGGAAGATGAGCTGTGGAAGGGCATTGACCA
droSec2 scaffold_0:1197514-1197871 - ATGTGGCCAGGAATTCGCCTGAATACGTTCGATTCATGGCCGTTTACCAGGTACGTAAC-TGGCT-----------------AGCTA----C-------------------------------------CT--TT------------------------GTTTTTTAGT-----------CTTTTAGTTTTGATT--TGTTTGTAT---T----------------ATTATTTG---TT--ATTTC-TAATTGGC-------TTTTGGTAGAAGGCTTGTAACCAGAGCACTATTCCTGTTACCCGAAGTTC-CGTTGG----AACAATGCGTACCACT-GATCGGCGGCCAAGAAAAGTATGTTTTTAT---GG--TTT--------TATTT----------------A----------A-TTTTCATTATATAAAAGATGCC--AA----------------------T----TAAGTAAG--C----------------------------AAA---TAGCT-------AATCA---AT----C---A--------C-CTATTTGTAGTCTCGCCGTGCCAAACGTCAGGAAGATGAGCTGTGGAAGGGCATTGACCA
droYak3 3L:2986462-2986816 + ATGTGGCCAGGAATCCGCCAGATTACGTTCGATTCATGGCCGTTTATCAGGTACTTTAC-TGGCT-----------------ATCTA------------------------------------------------T-----------------------G-TTTGCAGT-----------CTTTTAGTTTTCATT--TATTTATAT---T----------------ATTATTTG---TT--ATTTC-TAATTGGC-------TTTTGGTAGAAGGCTTGTAACCAGAGCAGTATTCCCGTTACCCGAAGTTC-CGTTGG----AACATTGCGTACCACT-GATAGGCGACAAAGAAAAGTATGTTTTTAT---GG--TTTTATT----CT-------TT-----TTTT-----------------GTATTTCATAAAAGATCTT--AG----------------------T----AAAGTACG--C----------------------------AGG---AATCT-------AATCC---AT----G---G--------T-CTACTTGCAGTCTCGCCGTGCCAAACGTCAGGAAGATGAACTGTGGAAGGGCATTGACCA
droEre2 scaffold_4784:5114640-5114998 + ATGTGGCCAGGAATCCGCCAGACTACGTTCGATTCATGGCCGTTTACCAGGTACGTAGC-TGGCT-----------------TTCTA----T-------------------------------------CT---TT-----------------------G-TTTGCAGT-----------CTTTTAGTTTTGATT--TATTTACTT---T----------------ATTATTTG---TT--ATTTC-AAATTGGC-------TTTTGGTAGAAGGCTTGTAACCAGAGCAGTATTCCTGTTACCCGAAGTTC-CGTTGG----AACAATGCGTACCACT-GATCGGCGACAAAGAAAAGTATGTTTTTAT---GG--TTTGATT----TA-------TT-----TTTT-----------------GTATTGTATAAAAGATCTC--AG----------------------T----TAGGTAAG--C----------------------------AGA---AAGCT-------AATCC---AT----G---G--------T-CTACTTGCAGTCTCGCCGTGCCAAACGTCAGGAGGATGAGCTGTGGAAGGGCATTGACCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ATGCAGCCAGAAATCCGGCGGATTATATTAAATTCATGGCGACCTACCAGGTAGAGAGT-CATATTGACCA--AGG---CT-AGCCG--------------------------------------A--CCT--TTT-----------------------G-TTTGTTATT--TAATTTA-CTTTTCGGTTTGATTTCGATTTTGAT---T----------------TCCATATGAGTTT--CTTTT-TTATTATT------TTTATCTTAGAATGCTTGCAGTCAGAGCACAATTCCTGTTATACGTCCGCA-----CCATCA-CA----G----GCAC-GGAGATCACCGTAAAAGAGTAGGTCTCGATTTTTA--TTTGAT--------T--------------C--ATTTCCAATATAATTT---------TAAA----TC--GA----TTA--------------------TTGGTATC--C----------------------------ATA---ACCAT-------AATTATTTGTCGATTCCTAACTTCTTGCTATCTTTGCAGAGCCGAAGATCTAGGCGGCAGGAGAACGAGTTGTGGAAGGGCATAGACCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGAGTTGTGGAAGGGCATAGACCA2711.001000001
......CCAGAAATCCGGCGGATTAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
droVir3
ACGTCGCACGAAATCCGCCGGAATATGTAAAATTCATGACGGTCTACCAGGTAGCCATA-A----TCACAATAGGT---CC-AGCCC--------------------------------------T--TCC--TTG-----ACTTTCGTTTTTG----------CCTGG-----------CTTTT------GATT--TCTATGATT---T----------------TTCCCTTA---TG--ATATT-CTTTTTG--------TACTCGTAGAACGCTTGCAATCAAAGCCAGATTCCCGTTTGCCGTAATCT-CAATTA----TAATGCACAGAGTTCTGGGTC-AAATCGCCGAAGAGTAGGTTAT-AT---TTTGT-T--------TATTT-C--TT---AATTT--AATTGCAAC------------A-----------TT--AGCCAAATGTAGATAAATATACCCA----AGTCTGGG--C-----------TCTCGTT-TAAGTGCTTGGCT----TAT--------ACTT---CT----G---A--------T-GATTTTATAGAATCGCCGTGCCAGACGACAGGAACACGAGCTGTGGAAGGGCATTAATCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............CGCCGGAATATGTAAAATTCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TTCCCGTTTGCCGTAATCT-....................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGAACACGAGCTGTG...............1911.001000000000000001000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACAGGAACACGAGC...................1811.001000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCAGACGACAGGAACACGAGCTG.................2611.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TCCCGTTTGCCGTAATCT-CAAT................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CAATTA----TAATGCACAGAGTTCTGGGT......................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................GTTCTGGGTC-AAATCGCCG...........................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCCA----AGTCTGGG--C-----------TCTCGTT-TA..................................................................................................................2511.001000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................A----TAATGCACAGAGTTCTGGGT......................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................TTTG----------CCTGG-----------CTTTT------GATT--TCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
ACGTCGCACGAAATCCGCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGGAACACGAGCTGTGGA.............2111.001000000000000000000000000000000000000000000000000000000000000010
droGri2
ATGTTGCACGAAATCCAGCGGATTATGTCAAGTTCATGACAGTCTATCAGGTAGCCTCA-A----TTAATGCAGCAGTAACACAATC--------------------------------CCTGCAACATTT--TTT----------AGTTGTAGCGTGGA-----TATTT--A----TTTTGTTTGGTTTCCAT---CAGT---TT---T----------------TTTATTTT-----------G-AATCTTATAATTTTGCTCACTTAGAAAGCTTGCAAACAAGGCAAAATTCCCGTAAGCCGCAAACC-ACTTAA----AGATGATCAAAATCCT-GACCACCGTCGCAGAAAAGTATGTTTTTAT---TT--TAT--------TATCC----------------A--TCCGATAG--------------------------------------------------------------A--C--AAATATAGATAATGTT-GTTGAGCTCGGTTT-A--AT--------GCTC---CC----G---A--------TCATTTTCGCAGGCTCGCCGTGCCAAGCGTCAGGAGGATGAGCTGTGGAAGGGCATTGATCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATACGACTAGAAATCCAGCTGATTATGTTAAATTTATGACCGTCTACCAGGTGAGTCAC-TGTA------------------AACTCTGTGTCTGTGTCTGTGTGTGTGTGTGTCATTTGC--CAT--TTT--ATG-----------------------A-TTTGTAGTTGTT----TTTCTTTGGGTTTTTAT---GATTT---------------------------TTTTG---TG--TTTTG-AAACTTAT-------TTTATTTAGAAAGCTTGCAATCAAAGTCATATACCCGTAACCCGACGTCC-ACGTAG----CGAGCTGCTAGCTCAT-GGTCAACACCATAGAAAAGTATGTTTT-AT---GA--TTT--------TTCTT-C--AT-----TTTT-----------------CCCTCC------CACTGCC--AA----------------------C----TTTGAAGAGAGAGAGAGAGAG---------------------AGAATACT-AATTTTCATAA---CT----T---T--------T-CATTCAAAAGACTCGTCGTAGCAAACGTCAGGAGGATGAACTTTGGAAGGGCATCGATCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAACTTTGGAAGGGC........1913.00300210
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAACTTTGGAAGGGCATC.....2211.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAACTTTGGAAGGGCAT......2111.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGATGAACTTTGGAAGGGCATC.....2611.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGAGGATGAACTTTG...............1911.00101000
................................TTTATGACCGTCTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGTAGCAAACGTCAGGAGGATGA.....................2611.00101000
dp5
ATGTGGCTAGAAATCCAGCGGACTATGTCCGTTTCATGGCCGGCTACCAGGTGCGGCAC-CTTCT-----------------CACTC--------------------------------TC--CAA--CTT--TTC-----------------------A-GTTGTAGTT--T----TCTCTTTCAGTTTTTAT---GATTTGCGT---T----------------TTTATTTGTATTT--GTTTC-GCATCGA--------TCCATGTAGAAAGCTTGCCGACAGACCCAGATCCCAGTGACCAAAAGTGCCCGCCGCGAGA-GC----G---------GCTCAGAAA-AAAAGAAAGTATGTTTCT-T---GG--CTTAAT--------T--------------T--TCTTCCAATTTACGTT--------------------------------------------------TGAATGTG--CGAAAAGC----------AT-------T----TG-AATCTA------AATAATGAGAAAATT---T-----------TCTACGTAGAATCGCCGCGCCAAGCGCCAGGAAGATGAGCTATGGAAAGGCGTCGACCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGATGAGCTATGGAAAGGC........2314.0040000000040
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGATGAGCTATGGAAAGGCGTC.....2613.0030000000030
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCCAGGAAGATGAGCTA.................2112.0020000000020
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGAGCTATGGAAAGGCG.......2111.0010000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGAAGATGAGCTATGGAA............2111.0010000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCCAGGAAGATGAGCTT.................2111.0010000001000
.......TAGAAATCCAGCGGACTATGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAAGATGAGCTATGGAAG...........2111.0010000001000
............................................................................................................................................................................................................................................................................................AGACCCAGATCCCAGTGACCAAAAGTGCC....................................................................................................................................................................................................................................................................................................................2911.0010100000000
ATGTGGCTAGAAATCCAGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................CGACAGACCCAGATCCCAGTGAC..............................................................................................................................................................................................................................................................................................................................2311.0010010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAGCGCCAGGAAGATGA.....................2111.0010000001000
..................................CATGGCCGGCTACCAGGTGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCCAGGAAGATGAGCTATGG..............2411.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCAGGAAGATGAGCTAT................2111.0010000001000
........AGAAATCCAGCGGACTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
........................................................................................................................................................................................................................................................................................................CAGTGACCAAAAGTGCCCGCCG...............................................................................................................................................................................................................................................................................................................2211.0010100000000
..................................................................................................................................................................................................................................................................................................................AAGTGCCCGCCGCGAGA-GC----G---------TT.......................................................................................................................................................................................................................................................................................2220.5010000001000
droPer2
ATGTGGCTAGAAATCCAGCGGACTATGTCCGTTTCATGGCCGGCTACCAGGTGCGGCAC-CTTCT-----------------CACTC--------------------------------TC--CAA--CTT--TTC-----------------------A-GTTGTAGTT--T----TCTCTTTCGGTTTTTAT---GATTTGCGT---T----------------TTTATTTGTATTT--GTTTC-GCATCGA--------TCCATGTAGAAAGCTTGCCGACAGACCCAGATCCCAGTGACCAAAAGTGACCGCCGCGAGA-GC----G---------GCTCAGAAA-AAAAGAAAGTATGTTTCT-T---GG--CTTAAT--------T--------------T--TCTTCCAATTTACGTT--------------------------------------------------TGAATGTG--CGAAAAGC----------AT-------T----TG-AATCTA------AATAATGAGAAAATT---T-----------TCTACGTAGAATCGCCGCGCCAAGCGCCAGGAAGATGAGCTATGGAAGGGCGTCGACCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAAGATGAGCTATGGA.............1912.002000002
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAAGATGAGCTATGGAAGT..........2211.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGAGCTATGGAAGGG.........2011.001000001
...........AATCCAGCGGACTATGTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.........................................................................................................................................................................................................................................................ATCGA--------TCCATGTAGAAAGCT........................................................................................................................................................................................................................................................................................................................................................2011.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGATGAGCTATGGAAGG..........2111.001000001
..........................................................................................................................................................................................................................................................................................................GTGACCAAAAGTGACCGCCGC..............................................................................................................................................................................................................................................................................................................2111.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCAGGAAGATGAGCTATGGAA............2411.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAAGATGAGCTATGGAA............2011.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAAGATGAGCTATGGAAG...........2111.001000001
droAna3
ATGTGGCCAGGAATCAGCCGGACTATGTCCGATTTATGGCCATCTACCAGGTATGCCC--TGGAC---------------TTTACTC--------------------------------T--------TTT--TTC-----A------TTTCCCCAC--A-GAAG--CC----------ACTTTTATTTTTTGT---TCTTTTTAT---T----------------ATTTCTTGA--TC--ATTTCCCCATATGA-------TTTTGGTAGAAATCTTGTAATCGGACCTCCATACCCGTCACGCGAGGTTC-GGTTGG----AAATATGCGATCCGCT-GAACAACGCCCTAGAAAAGTATGTTTTT-G---GT--TTTTAT---------ATTCCACTATTATTT--AG-----------TTCCAATCGCT---------TT--GG----------------------TAATTTAAGTTTA--T----------------------------AAA---T-ATT-------AATAT---TT----T---A--------T-TAATTTATAGACTCGTCGTGCCAAACGCCAGGAGGATGAACTTTGGAAGGGCATAGACCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............TCAGCCGGACTATGTCCGATTTATGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
droBip1
ATGTGGCCAGGAATCAGCCGGACTATGTGCGATTCATGGCCATCTACCAGGTATGCCCG-GGACT-----------------TCAAA----C-------------------------------------CTTTATC-----------------------A-G--GAATC----------AGTTTCGTTTTTTAT---TATTTTTAT---TATTTATTT--------ATTTCTTGA--TC--ATTTCCATATATGA-------TTTTGGTAGCAATCTTGTAATCGGACCTCCATTCCCGTCACGCGAAGTTC-GGTGGG----GACTATGCGATCCTCT-GAACAACGCCAAAGAAAAGTATGTTTTTTTTATGT--TTT--------TAATA-TCCAATATTATTT--AGTTCCAATCT---------------AAAGATATA--AT----------------------T----AATGTTTA--T---------------------AGAACTTG------AAAT-------AATTC---GG----A---A--------T-ATATTTACAGTCACGCCGTTCCAAACGCCAGGAGGATGAACTCTGGAAGGGCATAGATCASizeHit CountTotal NormTotal
No Reads
droKik1
ATGTGGCCAGGAATTCGCCAGATTATGTGCGATTCATGGCTGTGTATCAGGTAGGCGCT-CTCGG-----------------GACTT--------------------------------TA--GAT--TGC---------------------------------------------------TTTATTTTTAGTT--TATTTT-A----C----------------ATTTTTCGT--TTGTGTTTC-CAATTGGC-------TTTTGGTAGAAAGCTTGTTCCCAGCGCACAATTCCCGTGACCCGAAGTTC-AGTCGG----AGAATTCTATTCCGAA-AAACAGCGCCCCAAAAAAGTATGTTTATTTTATGT--TTTTATGCTTTTATTT----------------A----------T-CCCTTATTGTTTGTGGGATTTCGGGG----------------------T----TAAATGAG-TC----------------------------AGA---GAGCT-------AC--A---GC----C---T--------C-CTCCTTGCAGTCTCGCCGTGCCAAACGCCAGGAGGATGAGCTGTGGAAGGGCATTGACCASizeHit CountTotal NormTotal
No Reads
droFic1
ATGTGGCCCGGAATTCACCCGAATATGTCAGATTCATGGCCGTTTACCAGGTATGACTCCTGGCC-----------------AGCTC--------------------------------C--------CCT--TTC-----------------------A-TTTGCAGT-----------CTTTTAGTTTTGATT--TACTATTAT---T---------------TGTTATTTG---TT--ATTTC-TAATTGGC-------TTTTGGTAGAAGGCTTGCAACCAGAAATCAATCCCCGTTACCCGAAGTTC-CGTTGG----AACAATGCATTCCGTT-GAAAGGCGCCCAAAGAAAGTATGTTTT-AT---TA--TTT--------TTT-ATTTTAATCTTATTT--AG---------A-TTCTCATTTTA-------------AA----------------------T---TTAAGTGAA--T----------------------------GGA---ATACT-------AACTA---CT--------A--------A-TTATTTACAGTCTCGCCGTGCCAAACGTCAGGAAGATGAGTTGTGGAAGGGCATTGACCASizeHit CountTotal NormTotal
No Reads
droEle1
ATGTGGCCAGAAATCATCCCGACTATGTCCGTTTTATGGCCGTGTATCAGGTAAGTGGT-TAGAG---------------CCCATTC--------------------------------C--------ATT--TTC-----------------------A-TTTGTAGC-----------CCTTTAGTTTTGATT--TA------T---T----------------ATTATTTG---TC--ATTTT-CAATTGGC-------TTTTGGTAGAAGGCTTGCAGCCAAAGCACAATTCCCGTAACCCGAAGTTC-CGTCGG----AACAAACTGCTCCCTT-GATCGGCGCCAAAGAAAAGTATGTTTT-AT---GG--TTT--------TATTA----------------C----------A-ATAGTAATATGTTGGAGATATC--CG----------------------T----TAAGTAAG--C----------------------------GGGTT-AATGTA------AATAA---TC----A---A--------C-TTACTTACAGTCTCGCCGTGCCAAACGTCAGGAAGATGAACTGTGGAAGGGCATTGACCASizeHit CountTotal NormTotal
No Reads
droRho1
ATGTGGCCAGGAATCCGCCGGATTATGTCCGATTCATGGCCGTTTACCAGGTAAGTAGT-TAGAT-----------------AGGCC-----------------------------------------TTT--TTT-----------------------A-TTTGTAGT-----------CTTTTAGTTTCGAGT--TA------T---T----------------ATTATTTG---TT--ATTTC-TAATTGGC-------TTTTGGTAGAAGGCTTGCAACCAGAGCACAATTCCCGTAACCCGAAGTTC-CGTCGG----AACAATTCGCCCCCTT-GATCAGCGGCAAAGAAAAGTATGTTTT-AT---GG--TTT--------TATTA----------------C----------G-TCAATATTATTTCTCAGATCCT--AG----------------------T----TAAGTAAG--C----------------------------AGA---AAAAT-------AAAAA---CT---TA---A--------T-CTACTTGCAGTCTCGTCGTGCCAAACGCCAGGAGGATGAATTGTGGAAGGGCATTGACCASizeHit CountTotal NormTotal
No Reads
droBia1
ATGTGGCCAGGAATTCGCCCGATTATGTCCGTTTCATGGCCGTTTACCAGGTATGCCCC-AGGCT-----------------AACTC--------------------------------CT--CTA--CTT--TTCTGCTAATTTTAGTTTT-GTTTTA-------------------------------TTAT---TTATTTATT---TATTTATTTATTTATTTATTATTTC---CT--ATTTT-TTATTGGC-------T-TTGGTAGAAGGCTTGTAACCAGAAAAATATCCCCGTAACCCGAAGTTC-CGTCGG----AACAACGAGTTCCATT-GATCGGCGACCAAGAAAAGTATGTTTTTAT---GG--TTT--------TATTA----------------G----------T-ATCGTATTATTTCTAAGATGTTGTAG----------------------T----AGAGTGAG--C----------------------------AGT---GACCT-------AAGAT---TC----A---A--------C-CTTCTTACAGTCTCGTCGTGCCAAACGTCAGGAAGACGAGCTCTGGAAGGGCATTGACCASizeHit CountTotal NormTotal
No Reads
droTak1
ATGTGGCCAGGAATTCACCGGATTATGTCCGTTTCATGGCCGTCTACCAGGTATGCGAA-TGGTT-----------------AACCC-----------------------------------------TTT--TTC-----------------------A-TTTTGAGT-----------CTTTTCGTTTTGATT--TA------T---T----------------ATCATTTG---TT--ATTTT-CATTTGGC-------TTTTGGTAGAAAGCTTGTAATCAGAGCAATATTCCCGTTACCCGAAGTTC-CGTCGG----AACATTAACTTCAACT-GATCGGCGCCAAAGAAAAGTATGTTTTCAT---TA-GTTT--------TATTT----------------C----CTATTTA-TTGTAATTATTTTGGAGATCTT--GG----------------------T----CAAGTCAG--C----------------------------AGG---AGTAT-------AAGAT---GT----A---T--------A-ATACTTTCAGTCTCGCCGTGCCAAACGCCAGGAAGATGAGCTGTGGAAGGGCATTGACCASizeHit CountTotal NormTotal
No Reads
droEug1
ATGTGGCCAGGAATTCTCCGGACTACGTCCGCTTCATGGCTGTTTACCAGGTTCGCAAT-TGGTT-----------------TGCTT----A-------------------------------------CT-------------------------------TTGCAGC-----------TTTTTAGTTTTTAT---TATTTATATTATT----------------ATTATTTG---TT--ATTTT-TAATTGGC-------TTTTGGTAGAAGGCTTGTAACCAGAGCAATATTCCCGTAACCCGAAGTTC-CGTCGA----AAAATTGCGTACCGTT-GATCGGCGTCAGAGAAAAGTAGGTTTTTAT---AA--TTT--------TATTA----------------T----------C-ATCGTATTATTTCCGATATCTC--AG----------------------T----TAAATGAA--A----------------------------AGA---TAT-T-A-----ATGAT---TT----A---A--------T-AAACTTTTAGTCTCGTCGTGCCAAACGTCAGGAAGATGAGCTATGGAAGGGCATCGACCASizeHit CountTotal NormTotal
No Reads
dm3
ATGTGGCCAGGAATTCGCCAGACTACGTTCGATTCATGGCCGTTTACCAGGTACGCAAC-TGGCT-----------------AGCTA----C-------------------------------------CT---TT-----------------------G-TTTGTAGT-----------CTTTTAGTTTTGATT--TATTTGATTTATT----------------ATTATTTA---TT--ATTTC-TAATTGGC-------TTTTGGTAGAAGGCTTGTAACCAGAGCACTATTCCTGTTACCCGAAGTTC-CGTTGG----AACAATGCGTACCACT-GATCGGCGGCCAAGAAAAGTATGTTTATAT---GG--TTT--------TTTTT------------TTTGA----------A-TTTTCATTATATGAAAGATGTC--AA----------------------T----TTAGTAAG--C----------------------------AGA---AAGCT-------AATCA---AT----A---A--------A-CTATTTGCAGTCTCGCCGTGCCAAACGTCAGGAAGATGAGCTGTGGAAGGGCATTGATCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAAACGTCAGGAAGATGAGCTGT................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................GTTGG----AACAATGCGTACCACT-GATCGGC..................................................................................................................................................................................................................................................................................2816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACGTCAGGAAGATGAGCTG.................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGAAGATGAGCTGTGGAAGGGC........2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGAGCTGTGGAAGGGCATTGATC.2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCAAACGTCAGGAAGATG......................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTCAGGAAGATGAGCTGTGG..............2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.......................TACGTTCGATTCATGGCCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TTGG----AACAATGCGTACCACT-GATCGGC..................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTACCCGAAGTTC-CGTTGG----AAA.......................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................TACCACT-GATCGGCGGCC..............................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................GTACCACT-GATCGGCGGCCAAGAAAA.......................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGAGCTGTGGAAGGGC........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TC-CGTTGG----AACAATGCGTACCACT-GA.......................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAAACGTCAGGAAGATGAGCTGA................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGAAGATGAGCTGTGGAAGGGCATT.....2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACGTCAGGAAGATGAGCTGTG...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGAAGATGAGCTGTGGAAGG..........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TGCGTACCACT-GATCGGCGGCCAAGAAA........................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................ACAATGCGTACCACT-GATCGGCGGC...............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................GGCTTGTAACCAGAGCACT.........................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................GAGCACTATTCCTGTTACC.............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TGCGTACCACT-GATCGGCGGCC..............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGCCGTGCCAAACGTCAGGAAGA........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................TTGTAGT-----------CTTTTAGTTTTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ATTCATGGCCGTTTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................CAGACTACGTTCGATTCATGGCCGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCCAAACGTCAGGAA..........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGTGCCAAACGTCAGGAAGATG......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCAAACGTCAGGAAGATGAGC...................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....GGCCAGGAATTCGCCAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTGTGGAAGGGCATTG....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TGCGTACCACT-GATCGGCGGCCAA............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAGCTGTGGAAGGGCA.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......................................................................................................................................................................................................................................................................................................TCCTGTTACCCGAAGTTC-CGTTGG----A.........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................................................................................................................................................................................................................CT-GATCGGCGGCCAAGAAAA.......................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................TACCCGAAGTTC-CGTTGG----AACAATGCGA................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCCAAACGTCAGGAAGATGAGCTG.................2711.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTGCCAAACGTCAGGAAGATGAG....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................ACCACT-GATCGGCGGCCAA............................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGGGCATTGATC.1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................TTTC-TAATTGGC-------TTTTGGTAG..............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTACCCGAAGTTC-CGTTGG----AA........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................ATAT---GG--TTT--------TTTTT------------TTTG....................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAGCTGTGGAC............15140.2130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATGTGGCCAGGAATTCGCCAGACTACGTTCGATTCATGGCCGTTTACCAGGTAAGTAAC-TGGCT-----------------CGCTA----C-------------------------------------CT--TT------------------------GTTTTTTAGT-----------CTTTTAGTTTTGATT--TATTTGTAT---T----------------ATTATTTG---TT--ATTTC-TAATTGGC-------TTTTGGTAGAAGGCTTGTAACCAGAGCACTATTCCTGTTACCCGAAGTTC-CGTTGG----AACAATGCGTACCACT-GATCGGCGGCCAAGAAAAGTATGTTTTTAT---GG--TTT--------TATTT----------------A----------A-TTTTCATTATATAAAAGATGTC--AA----------------------T----TAAGTAAG--C----------------------------AGA---AAGCT-------AATCA---AT----C---A--------A-CTATTTGCAGTCTCGTCGTGCCAAACGTCAGGAAGATGAGCTGTGGAAGGGCATTGACCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................TGCGTACCACT-GATCGGCGGCCAAA...........................................................................................................................................................................................................................................................................2511.00100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCTGTGGAAGGGCATTGAC..2211.00100001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGAAGATGAGCTGTGGAAGGGCAT......2711.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................AATGCGTACCACT-GATCG....................................................................................................................................................................................................................................................................................1811.00101000000000000000
......................................................................................................................................................................................................................................................................................................................TC-CGTTGG----AACAATGCGTACCACT-GAT......................................................................................................................................................................................................................................................................................2711.00100000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAGCTGTGGAAGGGCATT.....2211.00101000000000000000
..................................................................................................................................................................................................................................................................................................CTATTCCTGTTACCCGAAGTT......................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
......................CTACGTTCGATTCATGGCCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAAGATGAGCTGTGGAAGT..........2211.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................TACCACT-GATCGGCGGCCAA............................................................................................................................................................................................................................................................................2011.00100000000000001000
...................................................................................................................................................................................................................................................................................................TATTCCTGTTACCCGAAGTTC-CGTT................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
droSec2
ATGTGGCCAGGAATTCGCCTGAATACGTTCGATTCATGGCCGTTTACCAGGTACGTAAC-TGGCT-----------------AGCTA----C-------------------------------------CT--TT------------------------GTTTTTTAGT-----------CTTTTAGTTTTGATT--TGTTTGTAT---T----------------ATTATTTG---TT--ATTTC-TAATTGGC-------TTTTGGTAGAAGGCTTGTAACCAGAGCACTATTCCTGTTACCCGAAGTTC-CGTTGG----AACAATGCGTACCACT-GATCGGCGGCCAAGAAAAGTATGTTTTTAT---GG--TTT--------TATTT----------------A----------A-TTTTCATTATATAAAAGATGCC--AA----------------------T----TAAGTAAG--C----------------------------AAA---TAGCT-------AATCA---AT----C---A--------C-CTATTTGTAGTCTCGCCGTGCCAAACGTCAGGAAGATGAGCTGTGGAAGGGCATTGACCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................CTATTCCTGTTACCCGAAGTTC-CGTTGG----..........................................................................................................................................................................................................................................................................................................2811.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGGAAGGGCATTGACC.2011.0010100
droYak3
ATGTGGCCAGGAATCCGCCAGATTACGTTCGATTCATGGCCGTTTATCAGGTACTTTAC-TGGCT-----------------ATCTA------------------------------------------------T-----------------------G-TTTGCAGT-----------CTTTTAGTTTTCATT--TATTTATAT---T----------------ATTATTTG---TT--ATTTC-TAATTGGC-------TTTTGGTAGAAGGCTTGTAACCAGAGCAGTATTCCCGTTACCCGAAGTTC-CGTTGG----AACATTGCGTACCACT-GATAGGCGACAAAGAAAAGTATGTTTTTAT---GG--TTTTATT----CT-------TT-----TTTT-----------------GTATTTCATAAAAGATCTT--AG----------------------T----AAAGTACG--C----------------------------AGG---AATCT-------AATCC---AT----G---G--------T-CTACTTGCAGTCTCGCCGTGCCAAACGTCAGGAAGATGAACTGTGGAAGGGCATTGACCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................ATTGCGTACCACT-GATAGGC..................................................................................................................................................................................................................................................................................2012.00201000010000
............ATCCGCCAGATTACGTTCGATTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.....................................................................................................................................................................................................................................................................................................................................CATTGCGTACCACT-GATAGGC..................................................................................................................................................................................................................................................................................2111.00100000010000
.........................................................................................................................................................................................................................................................................................................................CGTTGG----AACATTGCGTACCACT-GATAGGC..................................................................................................................................................................................................................................................................................2911.00100000010000
droEre2
ATGTGGCCAGGAATCCGCCAGACTACGTTCGATTCATGGCCGTTTACCAGGTACGTAGC-TGGCT-----------------TTCTA----T-------------------------------------CT---TT-----------------------G-TTTGCAGT-----------CTTTTAGTTTTGATT--TATTTACTT---T----------------ATTATTTG---TT--ATTTC-AAATTGGC-------TTTTGGTAGAAGGCTTGTAACCAGAGCAGTATTCCTGTTACCCGAAGTTC-CGTTGG----AACAATGCGTACCACT-GATCGGCGACAAAGAAAAGTATGTTTTTAT---GG--TTTGATT----TA-------TT-----TTTT-----------------GTATTGTATAAAAGATCTC--AG----------------------T----TAGGTAAG--C----------------------------AGA---AAGCT-------AATCC---AT----G---G--------T-CTACTTGCAGTCTCGCCGTGCCAAACGTCAGGAGGATGAGCTGTGGAAGGGCATTGACCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................GTTGG----AACAATGCGTACCACT-GATCGGC..................................................................................................................................................................................................................................................................................2811.0010000100
.....................................................................................................................................................................................................................................................................................................................................CAATGCGTACCACT-GATCGGC..................................................................................................................................................................................................................................................................................2111.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGGAAGGGCATTGACC.2011.0010000100

Generated: 05/18/2015 at 02:30 AM