dmo_2351

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCGCCAAAGGGTAAGTGTGGTTTACTAACTACAGTTAGTATAAGCTAGACATAAGTTAAGATAGAATACTTAAAACAACAACAACTGTCTATTGGGACAGTTCTCACCTGCTTTGGAAGGCGGCAAGTTGGAAATTCCTTGTTGCGTCGAGCAAGCGCCATGCAAATGAAATTTCACTTTTGTCGCTCTGCGCAAATGTCACCCTAAAAAC ************************************************.(((.(((((((....))))))).)))......(((.(((.....(((((........))))).........((((((((....))))))))....((......))...((((((((..........))))))))))).))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	V049 head	V056 head
..............GATGATCTTGAAGTTGAACGTGAG.....................................................................................................................................................................................................................	24	0	1	3.00	3	0	3	0	0
..............GATGATCTTGAAGTTGAAC..........................................................................................................................................................................................................................	19	0	1	3.00	3	1	2	0	0
...........CAAGATGATCTTGAAGTTGAACGTGAG.....................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0
.........................AGTTGAACGTGAGCTGCGCCAAAG..........................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0
.......................GAAGTTGAACGTGAGCTGCGCC..............................................................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0
....................................................................................................................................TGGGACCGTTTTTACCTGCTTT.................................................................................................	22	3	1	1.00	1	0	0	0	1
.........................AGTTGAACGTGAGCTGCGCCAAA...........................................................................................................................................................................................................	23	0	1	1.00	1	0	1	0	0
..............GATGATCTTGAAGTTGAACGTGAGCTG..................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0
..............GATGATCTTGAAGTTGAACGTGAGCT...................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0
............AAGATGATCTTGAAGTTGAACGT........................................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0
.......GCTCCAAGATGATCTTGAAGTTGAACG.........................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0
......TGCTCCAAGATGATCTTGAAG................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0
.CCGTTTGCTCCAAGATGATCTTGA..................................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0
...GTTTGCTCCAAGATGATCTTGAAGTTGAA...........................................................................................................................................................................................................................	29	0	1	1.00	1	1	0	0	0
.........TCCAAGATGATCTTGAAGTTGAACG.........................................................................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0
...........................TTGAACGTGAGCTGCGCCCAAGG.........................................................................................................................................................................................................	23	1	1	1.00	1	0	0	1	0
..............GATGATCTTGAAGTTGAACGT........................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0
..............GATGATCTTGAAGTTGGAC..........................................................................................................................................................................................................................	19	1	2	0.50	1	0	1	0	0
.................................GTGAGCTGCGCCAAAGGATC......................................................................................................................................................................................................	20	2	3	0.33	1	0	1	0	0
..........................................................................................................................................................................GAAATTCCTTGTCGGGT................................................................	17	2	5	0.20	1	0	0	0	1
....................................................................................................................................TGGCACAGTTCTTACCT......................................................................................................	17	2	11	0.09	1	0	0	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6680:4720752-4721002 -	dmo_2351	TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCGCCAAAGGGTAAGTGTGGTTTACTAACTA----------------CA---GTTAGTATA---AGCTAGACATAAGTTAAGATAGAAT---------------------------------A-----------------------------------------------------------------------------------C--------T-------------TAAAACAAC--AACAACTGTCTATTGG------------------------------------------------GACA----------------GTTCTCACCTG-----CTTTGGAAGGCGGCAA--GTTGGAAATTCCT---TGTT--GCG-TCGA---GCAA-GCGCCA--TGCAAATGA-A-ATTTCACTTTT-GTCG-CTCTG--CGCAAATGTCACCCTAAAAAC
droVir3	scaffold_13049:6400715-6400998 -	dvi_18653	TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCGTCAAAGGGTAAGTTA-----TCA----A----------------CTATTCATAACAATTATA-TTAAATAAATATTAAAAT-GG--------------A-----------------------------------------------------------------------------------AAGTAGTAGAAATGTCTAAGAC--------CCAAATTCCAGGCAGATA---ACATTTACGTT--CT--TCGAGAAAACCT---------------------------------------------AAACGCTGTAAGGTTTTCTCACCTG-----CTTAA--GGGCGGCCA---GAGGAAATTCCT---CG----GCAAGCG-----AAA-GCGGGA--TGCAAA--CGA-TTTTCACTTTT-GTCG-CTTT---TGCAAATGTCACCCTAAAAAC
droGri2	scaffold_15110:6343116-6343358 +		TCCGTTTGCTCCACGATGATCTGGAAGTTGAACGTGAGCTGCGTCAAAGGGTAAGTTGAGATACCAAATGA----------------TT---GATAATAC---TA-TTAAATATTACTTAATAT-GGGT---------------------------------A-----------------------------------------------------------------------------------C--------A-------------CAAAATAACTCTTCAGTTATCTTTTCG------------------------------------------------CATTGCAAACTCTTTAAAATATTCTCACCTG-----CTTAT--GGGCGGCAATAATAGAAAATTCCTCCTCGAA----------------------------------CGA-TTTTCACTTTT-GTCG-CT-----TGCAAATGTCACCCTAAAAAC
droWil2	scf2_1100000004511:8119187-8119282 +		TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCGTCAAAGGGTGAGTTA-----T------A----------------CT---TTTTATATT---CACTAGACTTAAGTTCAAATTGGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	XR_group8:8852662-8852807 +		CGACTTTTTACCAGGGCACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-------------------------------------------------------------------------------------------ATGTTCACCTG-----CTTAAT-GGGTGGAAA--AAAAAACATTCTT---CGAATCGCAATCGAAATGAAA-GCGCCA--GGCCAAGACAATTTTTCCCTTTTGGTCG-CTTCTCGCGCAAATGTCACCCTAAAAAC
droPer2	scaffold_50:353595-353740 -		CGACTTTTTACCAGGGCACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-------------------------------------------------------------------------------------------ATGTTCACCTG-----CTTAAT-GGGTGGAAA--AAAAAACATTCTT---CGAATCGCAATCGAAATGAAA-GCGCCA--GGCCAAGACAATTTTTCCCTTTTGGTCG-CTTCTCGCGCAAATGTCACCCTAAAAAC
droAna3	scaffold_13337:7903381-7903649 +		TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAACTGCGTCAAAGGGTGAGTAA-----TAT----ATGGCTTTATGAATAATTTATTTTTAATATT----------------TTAATTT-AG--------------TAGAGT-GTTAT---------------------------------------------AAGGACTTAT--------------AGCTAGAATTAGATATTTTCAAGA------------TATGACATGCGGAAA-------------------------------------------------------------------------------------------ACTTTCACCTGAAAATCTT----GGGTGGA-----AAAAACATTCCC---CGAATCGC-----------AA-GCGCCAATCGCAAAAGTGA-TTCTCACTTTT-GTCG-CACTT--CGCAAATGTCACCCTAAAAAC
droBip1	scf7180000396541:59883-60123 +		TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCGTCAAAGGGTGAGTAA-----TCT----A----------------C-----ACTATATT----------------TTAAGAT-GG--------------TAAAGGGGATAT---------------------------------------------GGGGATTAGTAGTTA------GAGAGCTAGA-------------AAGA------------TATGACATGCGGAAA-------------------------------------------------------------------------------------------ACTTTCACCGGAAAATCTT----GGGTGGA-----AAATACATTCCC---CGAATCGC-----------AA-GCGCCA--GGGCAAG-CGA-TTCTCACTTTT-GTCG-CACTT--CGCAAATGTCACCCTAAAAAC
droKik1	scf7180000302474:228608-228960 +		TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCGTCAAAGGGTGAGTAA-----T------------------------------------------------------------TGTATTTAATGTTAATATTAAGGGGATTTTAAAAGGGTTTACTTTGCATATAAGTTATAATATTTTTGTATAAAGGAGATTAA--GTTTTTTTTT------AAGTAAAGAAA--ATCTATAACTAATTGAGT---------------------------CATA--CT--TTGAGAATAGTTATACATTTTTCTAGATTTTGAGATAACTTTAATTAGATATATTACAATC---------CACTTCCACCTG-----CTCGA--AGGCGGGTT---AAAAACATTCCC---CGAAGCGA-----------AAGGCGCCA--GGAAAATGCGA-ATTTCACTTTT-GTCGGCT-----CGCAAATGTCACCCTAAAAAC
droRho1	scf7180000757775:353-408 +		TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr3L:8737369-8737424 -		TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGCCAAAGGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	3l:8526897-8526952 -		TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_0:1014900-1014955 -		TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	3L:3172958-3173013 +		TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4784:5305510-5305565 +		TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCGCCAAAGGGTAAGTGTGGTTTACTAACTA----------------CA---GTTAGTATA---AGCTAGACATAAGTTAAGATAGAAT---------------------------------A-----------------------------------------------------------------------------------C--------T-------------TAAAACAAC--AACAACTGTCTATTGG------------------------------------------------GACA----------------GTTCTCACCTG-----CTTTGGAAGGCGGCAA--GTTGGAAATTCCT---TGTT--GCG-TCGA---GCAA-GCGCCA--TGCAAATGA-A-ATTTCACTTTT-GTCG-CTCTG--CGCAAATGTCACCCTAAAAAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............GATGATCTTGAAGTTGAACGTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	3
..............GATGATCTTGAAGTTGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	1	0	0	0	0	2
...........CAAGATGATCTTGAAGTTGAACGTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................AGTTGAACGTGAGCTGCGCCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.......................GAAGTTGAACGTGAGCTGCGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.........................AGTTGAACGTGAGCTGCGCCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..............GATGATCTTGAAGTTGAACGTGAGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............GATGATCTTGAAGTTGAACGTGAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
............AAGATGATCTTGAAGTTGAACGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......GCTCCAAGATGATCTTGAAGTTGAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
......TGCTCCAAGATGATCTTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.CCGTTTGCTCCAAGATGATCTTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...GTTTGCTCCAAGATGATCTTGAAGTTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.........TCCAAGATGATCTTGAAGTTGAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..............GATGATCTTGAAGTTGAACGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0

droVir3

TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCGTCAAAGGGTAAGTTA-----TCA----A----------------CTATTCATAACAATTATA-TTAAATAAATATTAAAAT-GG--------------A-----------------------------------------------------------------------------------AAGTAGTAGAAATGTCTAAGAC--------CCAAATTCCAGGCAGATA---ACATTTACGTT--CT--TCGAGAAAACCT---------------------------------------------AAACGCTGTAAGGTTTTCTCACCTG-----CTTAA--GGGCGGCCA---GAGGAAATTCCT---CG----GCAAGCG-----AAA-GCGGGA--TGCAAA--CGA-TTTTCACTTTT-GTCG-CTTT---TGCAAATGTCACCCTAAAAAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................TTGAACGTGAGCTGCGTCAAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4
..............GATGATCTTGAAGTTGAACGTGAGCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GATGATCTTGAAGTTGAACGTGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AGATGATCTTGAAGTTGAACGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.........................AGTTGAACGTGAGCTGCGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................GTTGAACGTGAGCTGCGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TGAACGTGAGCTGCGTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GATGATCTTGAAGTTGAACGTGAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GTTGAACGTGAGCTGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GATGATCTTGAAGTTGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GCTCCAAGATGATCTTGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AGATGATCTTGAAGTTGAACGTGAGCTGCGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	32	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................TGAAGTTGAACGTGAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.........................AGTTGAACGTGAGCTGCGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TGATCTTGAAGTTGAACGTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTCCT---CG----GCAAGCG-----AAA-GC...............................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TTTGCTCCAAGATGATCTTGAAGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TTGAAGTTGAACGTGAGCTGCGTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GTTGAACGTGAGCTGCGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ATGATCTTGAAGTTGAACGTGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

TCCGTTTGCTCCACGATGATCTGGAAGTTGAACGTGAGCTGCGTCAAAGGGTAAGTTGAGATACCAAATGA----------------TT---GATAATAC---TA-TTAAATATTACTTAATAT-GGGT---------------------------------A-----------------------------------------------------------------------------------C--------A-------------CAAAATAACTCTTCAGTTATCTTTTCG------------------------------------------------CATTGCAAACTCTTTAAAATATTCTCACCTG-----CTTAT--GGGCGGCAATAATAGAAAATTCCTCCTCGAA----------------------------------CGA-TTTTCACTTTT-GTCG-CT-----TGCAAATGTCACCCTAAAAAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCGTCAAAGGGTGAGTTA-----T------A----------------CT---TTTTATATT---CACTAGACTTAAGTTCAAATTGGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............GATGATCTTGAAGTTGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	0	4	1	0
..............GATGATCTTGAAGTTGAACGTGAATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	1	2	0
...............ATGATCTTGAAGTTGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0
.........................AGTTGAACGTGAATTGCGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	1	0
.........................AGTTGAACGTGAATTGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0
.............AGATGATCTTGAAGTTGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0
......................TGAAGTTGAACGTGAATTGCGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0	0
..............GATGATCTTGAAGTTGAACGTGAATTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	1	1	0
..............GATGATCTTGAAGTTGAACGTGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0
.......................GAAGTTGAACGTGAATTGCGTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	2
....................CTTGAAGTTGAACGTGAATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.................GATCTTGAAGTTGAACGTGAATTGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
.......................GAAGTTGAACGTGAATTGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
............AAGATGATCTTGAAGTTGAACGTGAATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
.........................AGTTGAACGTGAATTGCGTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..............GATGATCTTGAAGTTGAACGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..................ATCTTGAAGTTGAACGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0

dp5

CGACTTTTTACCAGGGCACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-------------------------------------------------------------------------------------------ATGTTCACCTG-----CTTAAT-GGGTGGAAA--AAAAAACATTCTT---CGAATCGCAATCGAAATGAAA-GCGCCA--GGCCAAGACAATTTTTCCCTTTTGGTCG-CTTCTCGCGCAAATGTCACCCTAAAAAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTTTTGGTCG-CTTCTCG.....................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CGACTTTTTACCAGGGCACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-------------------------------------------------------------------------------------------ATGTTCACCTG-----CTTAAT-GGGTGGAAA--AAAAAACATTCTT---CGAATCGCAATCGAAATGAAA-GCGCCA--GGCCAAGACAATTTTTCCCTTTTGGTCG-CTTCTCGCGCAAATGTCACCCTAAAAAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAACTGCGTCAAAGGGTGAGTAA-----TAT----ATGGCTTTATGAATAATTTATTTTTAATATT----------------TTAATTT-AG--------------TAGAGT-GTTAT---------------------------------------------AAGGACTTAT--------------AGCTAGAATTAGATATTTTCAAGA------------TATGACATGCGGAAA-------------------------------------------------------------------------------------------ACTTTCACCTGAAAATCTT----GGGTGGA-----AAAAACATTCCC---CGAATCGC-----------AA-GCGCCAATCGCAAAAGTGA-TTCTCACTTTT-GTCG-CACTT--CGCAAATGTCACCCTAAAAAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............AGATGATCTTGAAGTTGAACGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	2	0
..............GATGATCTTGAAGTTGAACGTGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	1	1
.............AGATGATCTTGAAGTTGAACGTGAACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
..................ATCTTGAAGTTGAACGTGAACTGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.............AGATGATCTTGAAGTTGAACGTGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..............GATGATCTTGAAGTTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.....................TTGAAGTTGAACGTGAACTGCGTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
..............GATGATCTTGAAGTTGAACGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...GTTTGCTCCAAGATGATCTTGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
....................CTTGAAGTTGAACGTGAACTGCGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..............GATGATCTTGAAGTTGAACGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0

droBip1

TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGCTGCGTCAAAGGGTGAGTAA-----TCT----A----------------C-----ACTATATT----------------TTAAGAT-GG--------------TAAAGGGGATAT---------------------------------------------GGGGATTAGTAGTTA------GAGAGCTAGA-------------AAGA------------TATGACATGCGGAAA-------------------------------------------------------------------------------------------ACTTTCACCGGAAAATCTT----GGGTGGA-----AAATACATTCCC---CGAATCGC-----------AA-GCGCCA--GGGCAAG-CGA-TTCTCACTTTT-GTCG-CACTT--CGCAAATGTCACCCTAAAAAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAATTGCGTCAAAGGGTGAGTAA-----T------------------------------------------------------------TGTATTTAATGTTAATATTAAGGGGATTTTAAAAGGGTTTACTTTGCATATAAGTTATAATATTTTTGTATAAAGGAGATTAA--GTTTTTTTTT------AAGTAAAGAAA--ATCTATAACTAATTGAGT---------------------------CATA--CT--TTGAGAATAGTTATACATTTTTCTAGATTTTGAGATAACTTTAATTAGATATATTACAATC---------CACTTCCACCTG-----CTCGA--AGGCGGGTT---AAAAACATTCCC---CGAAGCGA-----------AAGGCGCCA--GGAAAATGCGA-ATTTCACTTTT-GTCGGCT-----CGCAAATGTCACCCTAAAAAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGCCAAAGGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............AGATGATCTTGAAGTTGAACGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................CTTGAAGTTGAACGTGAGTTGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TGAACGTGAGTTGCGCCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AGATGATCTTGAAGTTGAACGTGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............AAGATGATCTTGAAGTTGAACGTGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............GATGATCTTGAAGTTGAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AAGTTGAACGTGAGTTGCGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AGATGATCTTGAAGTTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GATGATCTTGAAGTTGAACGTGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GTTGAACGTGAGTTGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AGATGATCTTGAAGTTGAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GTTGAACGTGAGTTGCGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AAGATGATCTTGAAGTTGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TCTTGAAGTTGAACGTGAGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........CAAGATGATCTTGAAGTTGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GATGATCTTGAAGTTGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AGTTGAACGTGAGTTGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................AGTTGAACGTGAGTTGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
..................ATCTTGAAGTTGAACGTGAGTTGCGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
..............GATGATCTTGAAGTTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
..........................GTTGAACGTGAGTTGCGTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
.......................GAAGTTGAACGTGAGTTGCGTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.............AGATGATCTTGAAGTTGAACGTGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
..................ATCTTGAAGTTGAACGTGAGTTGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
..........................GTTGAACGTGAGTTGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0

droYak3

TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............GATGATCTTGAAGTTGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	1	0	0	0	2	0	0	0	0
..............GATGATCTTGAAGTTGAACGTGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	1	0	0	0	2	0	0	0	0
.............AGATGATCTTGAAGTTGAACGTGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.............AGATGATCTTGAAGTTGAACGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
........................AAGTTGAACGTGAGTTGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............AGATGATCTTGAAGTTGAACGTGAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................GTTGAACGTGAGTTGCGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............GATGATCTTGAAGTTGAACGTGAGTTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................GAAGTTGAACGTGAGTTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.CCGTTTGCTCCAAGATGATCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............GATGATCTTGAAGTTGAACGTGAGTTGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

TCCGTTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGTCAAAGGGTGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............GATGATCTTGAAGTTGAACGTGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2	0
.........................AGTTGAACGTGAGTTGCGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
............AAGATGATCTTGAAGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..............GATGATCTTGAAGTTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
..........................GTTGAACGTGAGTTGCGTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
.........................AGTTGAACGTGAGTTGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..........................GTTGAACGTGAGTTGCGTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
..............GATGATCTTGAAGTTGAACGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.........................AGTTGAACGTGAGTTGCGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
....................CTTGAAGTTGAACGTGAGTTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
..............GATGATCTTGAAGTTGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
....................CTTGAAGTTGAACGTGAGTTGCGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
...............ATGATCTTGAAGTTGAACGTGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0

dmo_2351

scaffold_6680:4720802-4720952 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads