ID:

dmo_2338

 Coordinate:

scaffold_6680:3946761-3946911 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.6 -28.5 -28.5

Flybase annnotation

CDS [Dmoj\GI12874-cds]; exon [dmoj_GLEANR_12844:2]; intron [Dmoj\GI12874-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+
mature
  1. scaffold_6359:3692630-3692652 +
  2. scaffold_6359:3906429-3906451 +
  3. scaffold_6473:6009945-6009967 +
  4. scaffold_6473:9961976-9961998 +
  5. scaffold_6473:12271569-12271591 +
  6. scaffold_6496:5962238-5962260 +
  7. scaffold_6496:10307913-10307935 +
  8. scaffold_6496:15394888-15394910 +
  9. scaffold_6496:15603655-15603677 +
  10. scaffold_6496:19150937-19150959 +
  11. scaffold_6496:25796566-25796588 +
  12. scaffold_6500:5197905-5197927 +
  13. scaffold_6500:24824666-24824688 +
  14. scaffold_6500:27386737-27386759 +
  15. scaffold_6540:18237152-18237174 +
  16. scaffold_6540:26340809-26340831 +
  17. dmo_2105  scaffold_6540:28866803-28866825 +
  18. scaffold_6540:32436776-32436798 +
  19. scaffold_6654:1944070-1944092 +
  20. dmo_2338  scaffold_6680:3946857-3946879 +
  21. scaffold_6328:1562020-1562042 +
  22. scaffold_6359:3143769-3143791 +
  23. scaffold_6359:4096181-4096203 +
  24. scaffold_6473:5988416-5988438 +
  25. scaffold_6473:6438562-6438584 +
  26. scaffold_6473:11744306-11744328 +
  27. scaffold_6473:12385132-12385154 +
  28. scaffold_6473:15471906-15471928 +
  29. scaffold_6496:10582901-10582923 +
  30. scaffold_6496:10853380-10853402 +
  31. scaffold_6496:17869831-17869853 +
  32. scaffold_6498:3148610-3148632 +
  33. scaffold_6500:5011147-5011169 +
  34. scaffold_6500:18040663-18040685 +
  35. scaffold_6500:19130527-19130549 +
  36. scaffold_6540:7641080-7641102 +
  37. scaffold_6540:16970288-16970310 +
  38. scaffold_6680:2986343-2986365 +
  39. scaffold_6680:5885230-5885252 +
  40. scaffold_6680:9742468-9742490 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAAACACATCGTAACCTTAAAGCCCATTTACCCTTTAAATGTTTCGAGCTTCACACGTGTCTAAGTTTCTGTTTCTGTTTCTGTCTCTTCGCCCCAATGCAGACTGACACAAACAAGGCAGCAGCAACAACATCAACAACTGCAGCCACAACAACAACAACAACAACAAACAGCGACCCAGGAGCTGAATTTGTGGATCAGGGCCATTTAAGCGAGATCTTGGTGCTGAGTGACACTCAAATCGATGGCCC
**************************************************(((((.((.....((((((((..(((((((.((((..((.((......)).))..)))).))))).(((.((((...............)))).)))...........................))..))))))))..)).))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V049
head
 M060
embryo
 V056
head
...........................................................................................................................................................ACCTACAACAACAAACAGCGA........................................................................... 21 2 12 1.92 23 12 11 0 0 0
.............................................................................................................................................................CTACAACAACAAACAGCGA........................................................................... 19 1 10 0.60 6 2 3 0 0 1
....................AGCCCATTTACCCTTTGAGTGA................................................................................................................................................................................................................. 22 3 2 0.50 1 0 0 1 0 0
................................CTTAAAATGTTTAGAGCTT........................................................................................................................................................................................................ 19 2 13 0.23 3 1 2 0 0 0
............................................................................................................................................................................................................................TGGTACTGGGTGACACCCA............ 19 3 9 0.11 1 0 0 0 1 0
...........................................................................................................................................................ACCTACAACAACAAACAGCG............................................................................ 20 2 20 0.10 2 1 1 0 0 0
..................................................................................................................................................CACAACAACAACAACAACAACAA.................................................................................. 23 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................CTACAACGACAAACAGCG............................................................................ 18 2 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................................GATCTTGGTGCTAAGTTAT................. 19 3 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................ACCTACAACAACAAACAGCGT........................................................................... 21 3 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................CTACAACGACAAACAGCGA........................................................................... 19 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

CTTTGTGTAGCATTGGAATTTCGGGTAAATGGGAAATTTACAAAGCTCGAAGTGTGCACAGATTCAAAGACAAAGACAAAGACAGAGAAGCGGGGTTACGTCTGACTGTGTTTGTTCCGTCGTCGTTGTTGTAGTTGTTGACGTCGGTGTTGTTGTTGTTGTTGTTGTTTGTCGCTGGGTCCTCGACTTAAACACCTAGTCCCGGTAAATTCGCTCTAGAACCACGACTCACTGTGAGTTTAGCTACCGGG
**************************************************(((((.((.....((((((((..(((((((.((((..((.((......)).))..)))).))))).(((.((((...............)))).)))...........................))..))))))))..)).))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V056
head
 V049
head
...........................................................................................................................................................TGGATGTTGTTGTTTGTCGC............................................................................ 20 2 20 3.85 77 34 41 1 1
...........................................................................................................................................................TGGATGTTGTTGTTTGTCGCT........................................................................... 21 2 12 2.83 34 13 20 1 0
.............................................................................................................................................................GATGTTGTTGTTTGTCGCT........................................................................... 19 1 10 2.60 26 11 15 0 0
.............................................................................................................................................................GATGTTGTTGTTTGTCGC............................................................................ 18 1 18 1.61 29 23 4 2 0
..............................................................................................................................................................ATGTTGTTGTTTGTCGCT........................................................................... 18 1 14 0.93 13 10 1 2 0
................................GAATTTTACAAATCTCGAA........................................................................................................................................................................................................ 19 2 13 0.31 4 4 0 0 0
...............................CGAATTTTACAAATCTCGAA........................................................................................................................................................................................................ 20 3 20 0.15 3 3 0 0 0
....GTCTAGCATTGGGATTTCA.................................................................................................................................................................................................................................... 19 3 10 0.10 1 0 1 0 0
.............................................................................................................................................................GATTTTGTTGTTTGTCGCT........................................................................... 19 2 20 0.05 1 0 0 0 1
...........................................TGCGCGAAGTATGCACAG.............................................................................................................................................................................................. 18 3 20 0.05 1 0 1 0 0
............................................................................................................................................................................................................................ACGACGACCCACTGTGAGTA........... 20 3 20 0.05 1 1 0 0 0
.............................................................................................................................................................GATGTTGCTGTTTGTCGC............................................................................ 18 2 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6680:3946711-3946961 + dmo_2338 GAAACACATCGTAA------CC-----------TT-----AA----AGCCCAT-------------------T-TACCCTTTAAATGTTTC-----------------------------------------------------------------------GAGCTTCACACGTGTCTAAGTTTCT-----------------GTTTCTGTTT----------------------CT-----------GTCT-CTTC-----GC--------CC-CAATGCAGACTGAC--A-------------------CAAACAAGGCAGCAG-----------------------CAACA------A---C---A---------------------------T----CAACAACTGCAGCCA--------------CAA---CA------ACAACAACA---A------C-----AAC-------A------AACAGCG------A---------C--------C----------------------CAGGAGC------TGAATT----------------------------TGTGGATCAGGGCCATTTAAGCGAGA--TCTTGGTGCTGAGTGACACTCAAAT--------CGATGGCC-------------------C
droVir3 scaffold_13049:5605957-5606215 + TAAATACTATTTAAAGGGTTCCGTAAAGTACAACAGTGCTATGAACAAAA------------------T---G--------CATTAACTCTTTACCCTTGCTT----------------------------------------------------------------------GTGTGTATT-----TTATTTATATATATTCGCTTTCTGTTG----------------------CT------------GTC-TTTTC----GC---------C-CAATGCAGACTGAC--A-------------------CAAACAAGGCAACAGC-AG-------------------CAACAACAACAACTGCAA---------------------------CAAACGG---------------CGAC------CCAGG------------------------------------------------------------------------------------------------------------------AGC------CGAATT----------------------------AGTGGATCAGGGCCATTTAAGCGAGA--TCTTGGTGCTGAGTGACACTCAAAT--------CGATGGCC-------------------A
droGri2 scaffold_15110:13438413-13438617 - TT----------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGTTCACACGTGTCT------------------------------------------TTCT-----------CTGTCT-------TTT--C----------T--CT--ACC-CAATGCAGAGTGAC--A-------------------CAAACAAGGCAGCAGC-AA-------------------CAACTGCAGCAA---------------------------------------------------------------------CGA---CAACAGCAA------CAGCAGCAAAGACAACAA---CAGCAACA------AACAGCG------A---------C--------C----------------------CAGGAGC------CGAATT----------------------------AGTGGATCAGGGCCATTTAAGCGAGA--TCTTGGTGCTGAGTGACACTCAAAT--------CGATGGCC-------------------A
droWil2 scf2_1100000004515:4072663-4072891 - CAAAAATTCAAATG------CC-----------CA-----AA----AGTACGTTACGCGTTTAAAAATTATTT-----------------TAAACCAGCCACCTACTAAGTAATTCTGTTGGCCTGGTATTTCATATTT-----------------------------------------------------------------------------------------------------------------TCTCCA-GTACGAATTTA--GTCCA--AAAAT---------TTC-T---TA-CAATAACAAGAACAAT---------T------TTAACAACA-A---CAACA------ACAACAA---------------------------C---------------------CACA------ACAACAA---CAACAACAA------CAACAACAA---C-----AAC-------AATTAC-AACAACAACAA-----------------------------------------------------------------------------------------------------------------------------------------------T--------TACAACAA-------------------C
dp5 XR_group8:2357301-2357501 + GTGCCACGA-----------------------------------AAATCG---------TACAAGAATCATTT--------TAATTATTTTTGACTTCAATTTGTTT-------------------GTGTTTCCTCTTTCTTCTTC-----------------------------------------------------------------------------------------------------------------------T--TT--ATCCA--CGCAT--------ACGC-T---TT-GAATCACT---------AG-----G--CGAAAATACCAACA----------ACAATAACAACAT---------------------------C---------------------CAAA------ACAACAA---CAACAACAA------CAGTAACAAGACCAACA----CA---------AC-AAC------------------------------------------------------------------------------------------------------------------------------------------AACAACATCCACAC--------CGGTAAAA-------------------C
droPer2 scaffold_24:698224-698400 - TTT-------------------------------------------------------------------------------AATTATTTTTGACTTCAATTTGTTT-------------------GTGTTTCCTCTTTCTTCTTC-----------------------------------------------------------------------------------------------------------------------T--TT--ATCCA--CGCAT--------ACGC-T---TT-GAATCACT---------AG-----G--CGAAAATACCAACA----------ACAATAACAACAT---------------------------C---------------------CAAAACAACAACAACAA---CA---ACAA------CAGTAACAAGACCAACA----CA---------AC-AAC------------------------------------------------------------------------------------------------------------------------------------------AACAACATCCACAC--------CGGTAAAA-------------------C
droAna3 scaffold_13337:16400950-16401184 + TCT---------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCACACGTGTCTACA-----GTATTTATCTTTCTTTACTT----------------------------------TTTTCTTTTTTT-CTCTG----GCA--TTT--------CGCAGGCTGAC--A-------------------CGAACATCGAGGCAGG-GC-------------------GAGCAGAAGCAG---------AAGCAGCTGTTTCGATTTCTGTTTCTGGTTC---------------AGGA------GCAGGAG---CC------GCAG---------------------------------------------------------------------------------------TC------GGAATTGGAATTGGAATTCCAGAGAGC----------------------------AGCGAATTAGCTGAGA--TCTCGATACTGAATGACACGCAAAT--------CGATGTTC-------------------C
droBip1 scf7180000396589:70356-70593 - TCT---------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCACACGTGTCTACA-----GTATTTATCTTTCTTT---------------------------------T--T-TTTTCCT-TTTT-CTGTG----GCA--TTT--------TGCAGGCTGAC--A-------------------CGAACATCGAGGCAGG-GC-------------------GAGCTGAAGCAG---------AAGCAGCTGTTTCGATTTCTGTTTCTGGTTC---------------AGGA------GCAGGAG---CA------GGAG---------------------------------------------------------------------------------------CCGCAGTCCGAATTGGTATTGGAATTCCAGAGAGC----------------------------AGCGAATTAGCGGAGA--TCTCGGTGCTGAATGACACGCAAAT--------CGATGTTC-------------------C
droKik1 scf7180000302441:2842290-2842511 - AAACGCCCC---------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCACAGTCAACAACG-----C------------------------------C-------------------------------------------------------------GC-AGCCGAT--T-------------------CAATCTCCGCAGCAG-----------------------CAGCA------CCAACAGCAGATT---------------------G---------------------TGCA------GCAACAACAACA------G---CAGCA---GCAACA---------------------------------------------------------------------------------TCAAATTGTACAGCAACAACAGATAGTCCAGCAACAGCAACAATCTGT-------GCCAGTTTCGCCGCAAATTAT-ACA-------CCAGCACTTGATGCGGCAGCAACAGTTATTAAATCAAAGCCAAATGC
droFic1 scf7180000454107:1131985-1132231 - GAGTTTAAATTAAAT---------A------AACA-----AA-------------------TAAAATGTATTCT-------GACACATTCTTAATCACATTTTTTTTA---------------ACAATGTCTCCTGTTT-----------------------------------------------------------------------------------------------------------------TCTTGA-----CCA--TTT----------CAGACACCGAAATTCCTATTGTC-AAA----CAATCAACGAGTCCGG-CA---------CCGC-AGCAGCAACA------C---C---A---------------------------G----CAACAGCAACACCTG--------------CAG---CA------GCACCAGCA---A------C-----AGC-AGGCGCA-CAA--TGCGGCAACAT------------------------------------------------------------------------------------------------------------TTGCCGGCG--CCACCGCGCTGCTCCACATC-AAGA--------CGGA--GC-------------------A
droEle1 scf7180000491193:2859155-2859347 + TCT---------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCACACGTGTCTGAGCTGAGG------------------------------TCTTT-TCTTATGTAG-TT--T-C-------TTTC-CTCT-----GCA--TTT----------CAGGCTGAC--A-------------------CGAACATCGAGGCAGG-GC-------------------GAGCAGAAGCAGCTGTTT---------------------------CTGGTTC---------------AGGA------GCAGGAG---CA------GGAG---------------------------------------------------------------------------------------CTGGAGCTGGAGC------GG----------------------------------------------AATTAGCCGAGA--TCTTGGTGCCGAATGACACGCAAAT--------CGCTGTTC-------------------C
droRho1 scf7180000779337:92649-92866 - GTAGAAAAG--------------------------------------------------------------------------------TTTAACTTTAATTTATTT-------------------AT---TGCTTTGTTTTATTTATTTTCAAAATTAGTAAAATTACACATGCAACT---------------------TT-------------------------------------------------------------------------------------------TTC-T---CT-CTGTTGCAGCAACTGT--A-------------ATAATTGC-AGCAGCAACA------T---A---A---------------------------T----CAACTGTAGCAGCGG--------------CAG---CA------GCAACAGCA---G------C-----AAC-------A--TGC-AATATTAGCGGCCACAGCA-------------------------------------------------------------------------------------------------------GCAACA--TGGGGAACCTG---AGCACCGACAG--------CAACATCG-------------------G
droBia1 scf7180000302428:8312329-8312534 - GAAAAAGAAA---------------------AACA-----AGGAAAACAA------------------T---T--------TTTTAATTTTTCACTTCAATTTGTTT-------------------GTGTTTCCTCTTTCTTCTTC-----------------------------------------------------------------------------------------------------------------------T--TT--TTCCAAACGCAT--------ACGC-T---TT-CAATCACT---------AG-----G--CGACAATACCAACA-ACAACAACA------T---C---A---------------------------C---------------------CA------ACA------------ACAC------CAGTAACAAGACCAACAA---CAACACCA-GTAC-AACAACAACATCCACACCG---------------------------------------------------------------------------------------------------------------------------------GTCAAAC--------AAACGCCA-------------------C
droTak1 scf7180000415773:35294-35465 - TCT---------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCACACGTGTCTGAG-----G------------------------------TCTTT-TCT---------TTCTGT-------TTTC-CTCT-----GCA--TTT---------CCAGGCTGAC--A-------------------CGAACATCGAGGCAGG-GC-------------------GAGCAGAAGCAGCTGTTT---------------------CTGATTCTGGTTC---------------AGGA------GCAGG------------------------------------------------------------------------------------------------------------------AGC------GG----------------------------------------------AATTAGCCGAGA--TCTTGGTGGCGAGTGACACGCAAAT--------CGATGTTC-------------------C
droEug1 scf7180000409215:70502-70665 - TCT---------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCACACGTGTCTGAA-----A------------------------------TCTTTC----------------------------C-CTCT-----GCA--TTTTTT------CCAGGCTGAC--A-------------------CGAACATCGAGGCAGG-GC-------------------TAGCAGAAGCAGCTGTTT---------------------------CTGGTTC---------------AGGA------GCAGGAG---CA------GG---------------------------------------------------------------------------------------------------GTC------GG----------------------------------------------AATTTGCCGAGA--TCTTGGTGCCGAGTGACACGCAAAT--------CGATGTTC-------------------C
dm3 chr2L:17558299-17558539 + GAAAAGCTTAACAA------A------------------------------------------------------------------TTTAAAGCCATACATTGAATA---------------ATAAGGTTTCCTATTTTTT--------------------------------------------------------------GTTTGTGTTG-------------------------------------------------------------------CTGAAAAAC--ACCC-TGTTTTC-T--------AGCAATCAAACAAG-GG------------C-AGCAGCAACA------C---C---A---------------------------A----CAACAA-----------------------CAG---CAGCAGCAGCAA------CAA---------------CAATGTGAAGCAC-AAAAA-AGTGGTTACCCCG---------------------------------------------------------------------CACAGTCAAAAGTCTGCTCGTCTGGACAGATTGGACGGACATTATTGCT-------GCTGCTCGCGT--------CGCTGCCG-------------------C
droSim2 3l:9233416-9233662 + AAAAAACACAGAA----------------------------A--------------------GAAAACTATTT-----------TAATTTTTGACTTCAATTTGTTT-------------------GTGTTTCCTCTTTCTTCTTC-----------------------------------------------------------------------------------------------------------------------T--TT--TTCC-AACGCAT--------ACGC-T---TT-CAATCACT---------AG-----G--CGACAATACCAACA----ACAACA------T---C---A---------------------------C----CAAC-----------------------------------AACAC------CAGTAACAAGACCAACAA---CAACACCA-GCAC-AACAACAACATCCACACCGGTCAAACAGACACCACAACAACAGCACCAGCAGCAATCCGAGC------AG----------------------------------------------GATCCGCTGGCA--CCCAACT-----------------------------------------------------C
droSec2 scaffold_2:7525494-7525662 + TCT---------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCACACGTGTCTGAG-----G------------------------------TCTTTTTCTT----AGCTT--T-T-------TTTC-CTCT-----GCA--TTT---------TCAGGCTGAC--A-------------------CGAACATCGAGACAGG-GC-------------------GAGCAGAAGCAGCTGTTA---------------------------CTGGTTC---------------AGGA------GCAGG------------------------------------------------------------------------------------------------------------------AGC------GG----------------------------------------------AATTAGCCGAGA--TCTTGGTGCCGAGTGACACGCAAAT--------CGATGTTC-------------------C
droYak3 2L:1476147-1476332 - ATCTTG------------------------------------------------------------------------------TAA--------------------------------------------------------------------------------------ATATTCT------------------------GTGCCTATTGCTAAACATTT----------------------------A-CTTC-----ATG--TTTTAG------AGCGGCTTTC--A-------------GCA---AC--AACAGAGACAGA-CCCCT----------------CAGCAGCAGCAGCAACAT---------------------------CAGCATC---------------AGCA------GCAGCAG---CA------GCAGCAGCA---G------CAACAT---CAGCAGCA-GCATCAGCAGCAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAACAT--------CAACATCA------------------GC
droEre2 scaffold_4784:3741576-3741761 - TCT---------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCACACGTGTCTGAG-----G------------------------------TCTTTCTCTT----AG----CTCT-------TTTC-CTCT-----GCA--TTT---------TCAGGCTGAC--A-------------------CGAACATCGAGGCAGG-GC-------------------GAGCAGAAGCAGCTGTTA---------------------------CTGGTTC---------------GGGA------GCAGGAG---CA------GGAG---------------------------------------------------------------------------------------CAGGAGCAGGAGC------GG----------------------------------------------AATTAGCCGAGA--TCTTGGTGCCGAGTGACACGCAAAT--------CGATGTTC-------------------C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GAAACACATCGTAA------CC-----------TT-----AA----AGCCCAT-------------------T-TACCCTTTAAATGTTTC-----------------------------------------------------------------------GAGCTTCACACGTGTCTAAGTTTCT-----------------GTTTCTGTTT----------------------CT-----------GTCT-CTTC-----GC--------CC-CAATGCAGACTGAC--A-------------------CAAACAAGGCAGCAG-----------------------CAACA------A---C---A---------------------------T----CAACAACTGCAGCCA--------------CAA---CA------ACAACAACA---A------C-----AAC-------A------AACAGCG------A---------C--------C----------------------CAGGAGC------TGAATT----------------------------TGTGGATCAGGGCCATTTAAGCGAGA--TCTTGGTGCTGAGTGACACTCAAAT--------CGATGGCC-------------------CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................CA--------------CAA---CA------ACAACAACA---A------C-----AAC-------A------A..............................................................................................................................................................................................23200.051100000
droVir3
TAAATACTATTTAAAGGGTTCCGTAAAGTACAACAGTGCTATGAACAAAA------------------T---G--------CATTAACTCTTTACCCTTGCTT----------------------------------------------------------------------GTGTGTATT-----TTATTTATATATATTCGCTTTCTGTTG----------------------CT------------GTC-TTTTC----GC---------C-CAATGCAGACTGAC--A-------------------CAAACAAGGCAACAGC-AG-------------------CAACAACAACAACTGCAA---------------------------CAAACGG---------------CGAC------CCAGG------------------------------------------------------------------------------------------------------------------AGC------CGAATT----------------------------AGTGGATCAGGGCCATTTAAGCGAGA--TCTTGGTGCTGAGTGACACTCAAAT--------CGATGGCC-------------------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATT----------------------------AGTGGATCAGGGC............................................................................1911.001000000000001000000000000000000000000000000000000000000000000000
....................................TGCTATGAACAAAA------------------T---G--------CATTAACTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................CAACAGC-AG-------------------CAACAACAACA.............................................................................................................................................................................................................................................................................................................................20200.102000000000000000000000000000020000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AACAGC-AG-------------------CAACAACAACAACT..........................................................................................................................................................................................................................................................................................................................22130.081000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................AGC-AG-------------------CAACAACAACAACT..........................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................GCAACAGC-AG-------------------CAACAACAACAAC...........................................................................................................................................................................................................................................................................................................................23200.051000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................CAACAGC-AG-------------------CAACAACAAC..............................................................................................................................................................................................................................................................................................................................19200.051000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................GGCAACAGC-AG-------------------CAACAACAACA.............................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................AG-------------------CAACAACAACAACTGCAA---------------------------C..........................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
TT----------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGTTCACACGTGTCT------------------------------------------TTCT-----------CTGTCT-------TTT--C----------T--CT--ACC-CAATGCAGAGTGAC--A-------------------CAAACAAGGCAGCAGC-AA-------------------CAACTGCAGCAA---------------------------------------------------------------------CGA---CAACAGCAA------CAGCAGCAAAGACAACAA---CAGCAACA------AACAGCG------A---------C--------C----------------------CAGGAGC------CGAATT----------------------------AGTGGATCAGGGCCATTTAAGCGAGA--TCTTGGTGCTGAGTGACACTCAAAT--------CGATGGCC-------------------ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CAAAAATTCAAATG------CC-----------CA-----AA----AGTACGTTACGCGTTTAAAAATTATTT-----------------TAAACCAGCCACCTACTAAGTAATTCTGTTGGCCTGGTATTTCATATTT-----------------------------------------------------------------------------------------------------------------TCTCCA-GTACGAATTTA--GTCCA--AAAAT---------TTC-T---TA-CAATAACAAGAACAAT---------T------TTAACAACA-A---CAACA------ACAACAA---------------------------C---------------------CACA------ACAACAA---CAACAACAA------CAACAACAA---C-----AAC-------AATTAC-AACAACAACAA-----------------------------------------------------------------------------------------------------------------------------------------------T--------TACAACAA-------------------CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAC-AACAACAACAA-----------------------------------------------------------------------------------------------------------------------------------------------T--------TACA........................20160.06101000
dp5
GTGCCACGA-----------------------------------AAATCG---------TACAAGAATCATTT--------TAATTATTTTTGACTTCAATTTGTTT-------------------GTGTTTCCTCTTTCTTCTTC-----------------------------------------------------------------------------------------------------------------------T--TT--ATCCA--CGCAT--------ACGC-T---TT-GAATCACT---------AG-----G--CGAAAATACCAACA----------ACAATAACAACAT---------------------------C---------------------CAAA------ACAACAA---CAACAACAA------CAGTAACAAGACCAACA----CA---------AC-AAC------------------------------------------------------------------------------------------------------------------------------------------AACAACATCCACAC--------CGGTAAAA-------------------CSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................AT--------ACGC-T---TT-GAATCACT---------AG-----..............................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACATCCACAC--------CGGT........................1811.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA---CAACAACAA------CAGTAACA..........................................................................................................................................................................................................................2350.2010010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA------ACAACAA---CAACAACAA------CA................................................................................................................................................................................................................................22180.0610100000000
droPer2
TTT-------------------------------------------------------------------------------AATTATTTTTGACTTCAATTTGTTT-------------------GTGTTTCCTCTTTCTTCTTC-----------------------------------------------------------------------------------------------------------------------T--TT--ATCCA--CGCAT--------ACGC-T---TT-GAATCACT---------AG-----G--CGAAAATACCAACA----------ACAATAACAACAT---------------------------C---------------------CAAAACAACAACAACAA---CA---ACAA------CAGTAACAAGACCAACA----CA---------AC-AAC------------------------------------------------------------------------------------------------------------------------------------------AACAACATCCACAC--------CGGTAAAA-------------------CSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TCT---------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCACACGTGTCTACA-----GTATTTATCTTTCTTTACTT----------------------------------TTTTCTTTTTTT-CTCTG----GCA--TTT--------CGCAGGCTGAC--A-------------------CGAACATCGAGGCAGG-GC-------------------GAGCAGAAGCAG---------AAGCAGCTGTTTCGATTTCTGTTTCTGGTTC---------------AGGA------GCAGGAG---CC------GCAG---------------------------------------------------------------------------------------TC------GGAATTGGAATTGGAATTCCAGAGAGC----------------------------AGCGAATTAGCTGAGA--TCTCGATACTGAATGACACGCAAAT--------CGATGTTC-------------------CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAGAGC----------------------------AGCGAATTAGC....................................................................2011.001000010
droBip1
TCT---------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCACACGTGTCTACA-----GTATTTATCTTTCTTT---------------------------------T--T-TTTTCCT-TTTT-CTGTG----GCA--TTT--------TGCAGGCTGAC--A-------------------CGAACATCGAGGCAGG-GC-------------------GAGCTGAAGCAG---------AAGCAGCTGTTTCGATTTCTGTTTCTGGTTC---------------AGGA------GCAGGAG---CA------GGAG---------------------------------------------------------------------------------------CCGCAGTCCGAATTGGTATTGGAATTCCAGAGAGC----------------------------AGCGAATTAGCGGAGA--TCTCGGTGCTGAATGACACGCAAAT--------CGATGTTC-------------------CSizeHit CountTotal NormTotal
No Reads
droKik1
AAACGCCCC---------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCACAGTCAACAACG-----C------------------------------C-------------------------------------------------------------GC-AGCCGAT--T-------------------CAATCTCCGCAGCAG-----------------------CAGCA------CCAACAGCAGATT---------------------G---------------------TGCA------GCAACAACAACA------G---CAGCA---GCAACA---------------------------------------------------------------------------------TCAAATTGTACAGCAACAACAGATAGTCCAGCAACAGCAACAATCTGT-------GCCAGTTTCGCCGCAAATTAT-ACA-------CCAGCACTTGATGCGGCAGCAACAGTTATTAAATCAAAGCCAAATGCSizeHit CountTotal NormTotal
No Reads
droFic1
GAGTTTAAATTAAAT---------A------AACA-----AA-------------------TAAAATGTATTCT-------GACACATTCTTAATCACATTTTTTTTA---------------ACAATGTCTCCTGTTT-----------------------------------------------------------------------------------------------------------------TCTTGA-----CCA--TTT----------CAGACACCGAAATTCCTATTGTC-AAA----CAATCAACGAGTCCGG-CA---------CCGC-AGCAGCAACA------C---C---A---------------------------G----CAACAGCAACACCTG--------------CAG---CA------GCACCAGCA---A------C-----AGC-AGGCGCA-CAA--TGCGGCAACAT------------------------------------------------------------------------------------------------------------TTGCCGGCG--CCACCGCGCTGCTCCACATC-AAGA--------CGGA--GC-------------------ASizeHit CountTotal NormTotal
No Reads
droEle1
TCT---------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCACACGTGTCTGAGCTGAGG------------------------------TCTTT-TCTTATGTAG-TT--T-C-------TTTC-CTCT-----GCA--TTT----------CAGGCTGAC--A-------------------CGAACATCGAGGCAGG-GC-------------------GAGCAGAAGCAGCTGTTT---------------------------CTGGTTC---------------AGGA------GCAGGAG---CA------GGAG---------------------------------------------------------------------------------------CTGGAGCTGGAGC------GG----------------------------------------------AATTAGCCGAGA--TCTTGGTGCCGAATGACACGCAAAT--------CGCTGTTC-------------------CSizeHit CountTotal NormTotal
No Reads
droRho1
GTAGAAAAG--------------------------------------------------------------------------------TTTAACTTTAATTTATTT-------------------AT---TGCTTTGTTTTATTTATTTTCAAAATTAGTAAAATTACACATGCAACT---------------------TT-------------------------------------------------------------------------------------------TTC-T---CT-CTGTTGCAGCAACTGT--A-------------ATAATTGC-AGCAGCAACA------T---A---A---------------------------T----CAACTGTAGCAGCGG--------------CAG---CA------GCAACAGCA---G------C-----AAC-------A--TGC-AATATTAGCGGCCACAGCA-------------------------------------------------------------------------------------------------------GCAACA--TGGGGAACCTG---AGCACCGACAG--------CAACATCG-------------------GSizeHit CountTotal NormTotal
No Reads
droBia1
GAAAAAGAAA---------------------AACA-----AGGAAAACAA------------------T---T--------TTTTAATTTTTCACTTCAATTTGTTT-------------------GTGTTTCCTCTTTCTTCTTC-----------------------------------------------------------------------------------------------------------------------T--TT--TTCCAAACGCAT--------ACGC-T---TT-CAATCACT---------AG-----G--CGACAATACCAACA-ACAACAACA------T---C---A---------------------------C---------------------CA------ACA------------ACAC------CAGTAACAAGACCAACAA---CAACACCA-GTAC-AACAACAACATCCACACCG---------------------------------------------------------------------------------------------------------------------------------GTCAAAC--------AAACGCCA-------------------CSizeHit CountTotal NormTotal
No Reads
droTak1
TCT---------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCACACGTGTCTGAG-----G------------------------------TCTTT-TCT---------TTCTGT-------TTTC-CTCT-----GCA--TTT---------CCAGGCTGAC--A-------------------CGAACATCGAGGCAGG-GC-------------------GAGCAGAAGCAGCTGTTT---------------------CTGATTCTGGTTC---------------AGGA------GCAGG------------------------------------------------------------------------------------------------------------------AGC------GG----------------------------------------------AATTAGCCGAGA--TCTTGGTGGCGAGTGACACGCAAAT--------CGATGTTC-------------------CSizeHit CountTotal NormTotal
No Reads
droEug1
TCT---------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCACACGTGTCTGAA-----A------------------------------TCTTTC----------------------------C-CTCT-----GCA--TTTTTT------CCAGGCTGAC--A-------------------CGAACATCGAGGCAGG-GC-------------------TAGCAGAAGCAGCTGTTT---------------------------CTGGTTC---------------AGGA------GCAGGAG---CA------GG---------------------------------------------------------------------------------------------------GTC------GG----------------------------------------------AATTTGCCGAGA--TCTTGGTGCCGAGTGACACGCAAAT--------CGATGTTC-------------------CSizeHit CountTotal NormTotal
No Reads
dm3
GAAAAGCTTAACAA------A------------------------------------------------------------------TTTAAAGCCATACATTGAATA---------------ATAAGGTTTCCTATTTTTT--------------------------------------------------------------GTTTGTGTTG-------------------------------------------------------------------CTGAAAAAC--ACCC-TGTTTTC-T--------AGCAATCAAACAAG-GG------------C-AGCAGCAACA------C---C---A---------------------------A----CAACAA-----------------------CAG---CAGCAGCAGCAA------CAA---------------CAATGTGAAGCAC-AAAAA-AGTGGTTACCCCG---------------------------------------------------------------------CACAGTCAAAAGTCTGCTCGTCTGGACAGATTGGACGGACATTATTGCT-------GCTGCTCGCGT--------CGCTGCCG-------------------CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................AGCAACA------C---C---A---------------------------A----CAACAA-----------------------CAG---C................................................................................................................................................................................................................................................2131.6750000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................C---A---------------------------A----CAACAA-----------------------CAG---CAGCAGCAG........................................................................................................................................................................................................................................21200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000080000000000000000000000001000
.............................................................................................................................................................................................................................................................................................................................................................GCAACA------C---C---A---------------------------A----CAACAA-----------------------CAG---C................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................A----CAACAA-----------------------CAG---CAGCAGCAGCAA------CAA---------------.............................................................................................................................................................................................................25190.2650000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AA-----------------------CAG---CAGCAGCAGCAA------CAA---------------C............................................................................................................................................................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................ACA------C---C---A---------------------------A----CAACAA-----------------------CAG---CA...............................................................................................................................................................................................................................................1890.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGCAGCAGCAA------CAA---------------C............................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AA-----------------------CAG---CAGCAGCAGCAA------CAA---------------CAA..........................................................................................................................................................................................................23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAGCAGCAGCAA------CAA---------------C............................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................A---------------------------A----CAACAA-----------------------CAG---CAGCAGCAGC.......................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000010000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................C---A---------------------------A----CAACAA-----------------------CAG---CAGCAGCAGCAA------...............................................................................................................................................................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ACAA-----------------------CAG---CAGCAGCAGCAA------C..............................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................A---------------------------A----CAACAA-----------------------CAG---CAGCAGCAGCA......................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AACAA-----------------------CAG---CAGCAGCAGCA......................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAA-----------------------CAG---CAGCAGCAGCAA------CA.............................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ACAA-----------------------CAG---CAGCAGCAGCAA------...............................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA-----------------------CAG---CAGCAGCAGCAA------CA.............................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ACAA-----------------------CAG---CAGCAGCAGCA......................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAGCAGCAGCAA------CAA---------------CAAT.........................................................................................................................................................................................................22130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................A---------------------------A----CAACAA-----------------------CAG---CAGCAGCAGCAA------CAA---------------C............................................................................................................................................................................................................27160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAAAAACACAGAA----------------------------A--------------------GAAAACTATTT-----------TAATTTTTGACTTCAATTTGTTT-------------------GTGTTTCCTCTTTCTTCTTC-----------------------------------------------------------------------------------------------------------------------T--TT--TTCC-AACGCAT--------ACGC-T---TT-CAATCACT---------AG-----G--CGACAATACCAACA----ACAACA------T---C---A---------------------------C----CAAC-----------------------------------AACAC------CAGTAACAAGACCAACAA---CAACACCA-GCAC-AACAACAACATCCACACCGGTCAAACAGACACCACAACAACAGCACCAGCAGCAATCCGAGC------AG----------------------------------------------GATCCGCTGGCA--CCCAACT-----------------------------------------------------CSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC------CAGTAACAAGACCAACAA---CAACACC......................................................................................................................................................................................................2811.00100000000000010000
droSec2
TCT---------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCACACGTGTCTGAG-----G------------------------------TCTTTTTCTT----AGCTT--T-T-------TTTC-CTCT-----GCA--TTT---------TCAGGCTGAC--A-------------------CGAACATCGAGACAGG-GC-------------------GAGCAGAAGCAGCTGTTA---------------------------CTGGTTC---------------AGGA------GCAGG------------------------------------------------------------------------------------------------------------------AGC------GG----------------------------------------------AATTAGCCGAGA--TCTTGGTGCCGAGTGACACGCAAAT--------CGATGTTC-------------------CSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................A-------------------CGAACATCGAGACAGG-GC-------------------........................................................................................................................................................................................................................................................................................................................................1911.0010100
...............................................................................................................................................................................................................................................................................................................................CGAGACAGG-GC-------------------GAGCAGAAG...............................................................................................................................................................................................................................................................................................................................2011.0010100
droYak3
ATCTTG------------------------------------------------------------------------------TAA--------------------------------------------------------------------------------------ATATTCT------------------------GTGCCTATTGCTAAACATTT----------------------------A-CTTC-----ATG--TTTTAG------AGCGGCTTTC--A-------------GCA---AC--AACAGAGACAGA-CCCCT----------------CAGCAGCAGCAGCAACAT---------------------------CAGCATC---------------AGCA------GCAGCAG---CA------GCAGCAGCA---G------CAACAT---CAGCAGCA-GCATCAGCAGCAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAACAT--------CAACATCA------------------GCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAACAT--------CAAC........................2020.50100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAACAT--------C...........................2660.33202000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAACAT--------C...........................22100.30300000030000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAACAT--------C...........................2380.25202000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAACAT--------C...........................20120.25301100010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAGCAGCAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------...............................................2040.25101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAACAT--------C...........................2480.25201000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAAC......................................21200.20401000030000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAACAT--------C...........................21110.18202000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAACAT--------............................20130.15202000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAACAT--------............................2570.14101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAACAT--------............................2480.13100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAACAT--------C...........................19170.12202000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAACA.....................................20200.10200000020000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAACAT--------............................23100.10100001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---G------CAACAT---CAGCAGCA-GC..................................................................................................................................................................................................19200.10200000020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGC.........................................19200.10200000020000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAACAT--------............................21120.08101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAAC......................................23160.06101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---G------CAACAT---CAGCAGCA-GC..................................................................................................................................................................................................20200.05100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAAC......................................19200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGC.........................................20200.05100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................ATC---------------AGCA------GCAGCAG---CA------GCA......................................................................................................................................................................................................................................19200.05100010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---G------CAACAT---CAGCAGCA-....................................................................................................................................................................................................24200.05101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAACA.....................................21200.05100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAT--------------------------------------------------------------------------------------------------------------------------CAGC-------AGCAGCAA.......................................21200.05100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................ATC---------------AGCA------GCAGCAG---CA------GCAGCAGCA---G------CA....................................................................................................................................................................................................................28200.05100100000000
droEre2
TCT---------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCACACGTGTCTGAG-----G------------------------------TCTTTCTCTT----AG----CTCT-------TTTC-CTCT-----GCA--TTT---------TCAGGCTGAC--A-------------------CGAACATCGAGGCAGG-GC-------------------GAGCAGAAGCAGCTGTTA---------------------------CTGGTTC---------------GGGA------GCAGGAG---CA------GGAG---------------------------------------------------------------------------------------CAGGAGCAGGAGC------GG----------------------------------------------AATTAGCCGAGA--TCTTGGTGCCGAGTGACACGCAAAT--------CGATGTTC-------------------CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAGGAGC------GG----------------------------------------------AATTAGCCGAG................................................................2411.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAG---CA------GGAG---------------------------------------------------------------------------------------CAGGAG........................................................................................................................................19200.0511000000

Generated: 05/18/2015 at 02:27 AM