ID:

dmo_2332

 Coordinate:

scaffold_6680:3553669-3553819 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.24 -7.24 -7.04

Flybase annnotation

exon [dmoj_GLEANR_12478:10]; CDS [Dmoj\GI12471-cds]; intron [Dmoj\GI12471-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_6500:796689-796712 -
  2. scaffold_6540:13288439-13288462 -
  3. dmo_2332  scaffold_6680:3553695-3553718 -
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTCATGAAAAACTTTCCATGCGGTTTTTTTTTTCATACCTGGGTGTAGATAGCCAAAAAAAAAAACAACTTAGAATGTAGAAATGTAAAATGCAAGTGAACAAAACCAAAACAAACAAAAACCTAACAACAATTCTTCTCTTGCGCTGATACTCACAACAACAACAACAACAACCACAACATGTTAAACAACTGTAAACAGAAACTAGAACAAAACGTAAATCGCTTACAAAAATCCGCTTCCACTTCGCA
**************************************************.........................(((.((...(((...((((((.(((...................................))).))))))....)))))))).....................(((.(((....))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 M046
female body
......................................................................................................................................................................................................CGCAAACTAGAACAAAACGTAAAT............................. 24 2 1 1.00 1 1 0
.......................................................................................................................................................CTCACAACAACAACAACAACAACC............................................................................ 24 0 3 0.33 1 0 1

Anti-sense strand reads

AAGTACTTTTTGAAAGGTACGCCAAAAAAAAAAGTATGGACCCACATCTATCGGTTTTTTTTTTTGTTGAATCTTACATCTTTACATTTTACGTTCACTTGTTTTGGTTTTGTTTGTTTTTGGATTGTTGTTAAGAAGAGAACGCGACTATGAGTGTTGTTGTTGTTGTTGTTGGTGTTGTACAATTTGTTGACATTTGTCTTTGATCTTGTTTTGCATTTAGCGAATGTTTTTAGGCGAAGGTGAAGCGT
**************************************************.........................(((.((...(((...((((((.(((...................................))).))))))....)))))))).....................(((.(((....))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
 V041
embryo
 V056
head
 V110
male body
..............................................................................................................................................................................................TGACATTTGTCTTTTATC........................................... 18 1 4 10.25 41 33 7 1 0 0
..............................................................................................................................................................................................TGACATTTGTCTTTTATCT.......................................... 19 1 2 3.00 6 4 0 1 1 0
..............................................................................................................................................................................................TGACATTTGTCTTTGATCTTACC...................................... 23 3 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................................................GACATTTGTCTTTTATCTCG........................................ 20 2 6 0.17 1 0 1 0 0 0
..............................................................................................................TGTGTGATTTTGGATTGTTTTTA...................................................................................................................... 23 3 6 0.17 1 0 0 0 0 1
..........................................................................................................................................................TGTTGTTGTTGTTGTTGTTGGT........................................................................... 22 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6680:3553619-3553869 - dmo_2332 TTCATGAAAAAC-TTTCCATGCG-------GTTT-------------------------TTT----T-TTTCATA-CCTGGGTGTAGATAGCC---------------------------AAAAA----AAA----AA---------------------------------------------------------------------------------------------------ACAACTTAGAATGTAGAAATG--TAAAATGC-AAGT---------------------------GAACAAAACCAA--AACAAACA-AA-----------------------------------AACCTAACAAC--------------AATTCTTCTCTTGC----GCTGATACTCACA---ACAACAACAAC---------------------------------A----------------A--------CAACC--ACA---------------ACATGTTAA--AC------------------------------------------------A--------------------------ACTG---T---------------AAACAGAAACTAGAACAAAACGTAAATCGCTTACAAAAA-TCC------------------GCTTCCACTTCGCA
droVir3 scaffold_13049:5183091-5183327 - dvi_18411 TTCATGAAAAAC-TTTCCATGCG-------GTTT-------------------------TTT------TTCCATA-CCTGGGTGCAGATAGCC---------------------------AA----------------A-------------------------------------------ATAAAGTATTAAA--------------------------------AAAAAAAACAACAATTTAGCCTGTAGAACTG--TAAAATGC-AAGC---------------------------AAA-------------C----AAAA-----------------------------------AACCTAACAAC--------------AATTCTTCTCTTGC----GCTACTACTCACA---ACAACAACAAC---------------------------------G----------------A--------CAACA--ACT----------------------------------------------------------------------------------------------------------G---T---------------AAACAGAAATTAGAACAAAACATAAACCGCTTACAAAAA-TCG------------------GCATCCACATCGCA
droGri2 scaffold_15110:9801558-9801804 + TTCATGAAAAAC-TTTCCATGCTACAAGCGGTTT-------------------------TTTTTTGTT--GTATACCCTGGGC----AA----------------------------GAAAC--------------AA-----------------------ATTTAG-------------------------------------------------------------------------------ACTGTAGAAATG--TA--ATGC-AACC---------------------------GA----------------------------------------------------------AACCTAACAAC--------------AATTCTTCTCTTGC----GCTGTTACTCACA---ACTACAACAATTAT-TTG--------------------------T----ACAACAACAACAACGA-----CAACC--ACA---------------TCTACATGA--AC------------------------------------------------A--------------------------ACTG---T---------------AAACAGAAATTAGAACAAAACGTAAATCGCTTACAAAAA-TCC------------------GCTTCCACCTCGCA
droWil2 scf2_1100000004729:2190444-2190770 + TTCATAAGAAATGTTTCCATGCT-------GT----TGCAGC-----AATCTACTATTTT------TTTTCTA-T-GGTGGGG----A---------------------------------------------------------------------AT--ATTAATT---TGCCTA---G-CTAAAGTAATG-------------------------------------------------------------------CA--ACA-GACAAAAAAAAAAAAAGACAAAATAATTAACACAAAAAAATCAA-------AAC--------------------------------------AAAAAAATACC-----A--------AATTCTTTTCTTGCGCGTTGCC-TACTTACC---AAACT-GTAAA---ACTGCCCCGAACTCCCCCTTTACCACCTACCACCACCAAC--CAACACCTCTGACCCTACCCAACCTCTATTCCAACTGC--------------------------------------------------------------------------------------------G---A---------------CAACAGATACTAGATCAGGGTATAAATCGCTTGCAAAAA-TCA------------------GCCTCGACATCACA
dp5 2:21903748-21903965 + AGGAAGAAAAAA-ATGT------------G-------------------TCT-TGAATTT------TTTTCAC-A-AGT-----------------------------------------------------------------------------------------------------------------GAA------AAGCAAACAAAACGAATAATCACAAA---------------------------AATG--CA--ATA-AAAGC---------------------------AAA--------------G---AATAAAACTAAAATTATAACTGTGTTAACGAAG------------------------------------------------------GAGAAGCA---GCAGCAGCAGC---------------------------------A----------------G--------CAGT----------------------------------------------------------------------------------------------------------------CGC------------------AGAAGGAGTAGAGGTAGAAG--AGAGTAGCAGCAAAAGCACACACTCTCTTGCACACACTCTCTCCCCCTCACA
droPer2 scaffold_3:4685196-4685407 + AGGAAGAAAAAA-ATGT------------G-------------------TCT-TGAATTT------TTTTCAC-A-AGT-----------------------------------------------------------------------------------------------------------------GAA------AAGCAAGCAAAACGAATAATCACAAA---------------------------AATG--CA--ATA-AAAGC---------------------------AAA--------------G---AATAAAACTAAAATTATAACTGTGTTAACGAAG------------------------------------------------------GAGAAGCA---GCAGCAG---------------------------------------------------------------CAGT----------------------------------------------------------------------------------------------------------------CGC------------------AGAAGGAGTAGATGTAGAAG--AGAGTAGCAGCAAAAGCACACACTCTCTTGCACACACTCTCTCCCCCTCACA
droAna3 scaffold_13337:1778336-1778662 + dan_2346 TTCATGAAAGAC-TTTCCATGCT-------GTGT--GGTGGGAGGGG----------------------------------------ATC-CTAGTCTAAAGTCCTAGAGTCCTAGAGGCCT--------------AGG----CTCTT-TCTAAT-GAT--ATCTAGAAAACGCCT------C-TAAGTATGCA-----------------------------------------------------------------------------------------------------------------------------ACC--------------------------------------GACTTAACACA---------------CTTCTTCTCTTGC----TGCG-TACTCACC--AACAACAACAAC---------------------------------A----ACAACAACAACAACTA-----CAACCAAACATCTACAACAACTACTACTCCCTGA--ATCCAAAAAATATGTTAAATCCTGAATCCTG------------A------A--------------------------ACCCCC-TGACAAAAAAAAAAAAAAACAGAAACAAGAACAGAACGCCAATCGCCTTCAAAAG-TCC------------------GCCTCCACATCCCA
droBip1 scf7180000395895:7688-7929 + TGTGTGTAAATA-GATAAAAA------------------------------------------------------------------------------------------------AAGAG--------------AAA----TTTATAAAAAATAAAT--TTTAAAA---TATGA------T-AAAAATTTGT-------------------------------------------------------------------------------A----------------------------------------GAATAACA---AAAATAACAAAATAAATGTGACAAAAAAAAGAAAGAAATGGAAAATAGTGCAAGTGCAGCAGTTCGGCTGGCAT----ATTGTTGCAAGTGGCAGCAACAACAAC---------------------------------A----------------A--------CAACA--ACA---------------ACCTACCAG--CA------------------------------------------------A-----------ACTAAAA--------AATGAA------------------A---------AAGAAAAATTATAAATAAATAGGAAAAA-T----------------------------------
droKik1 scf7180000302441:794081-794253 + AAACGAA-GCAA-AAACCAGAGTACAAAAA-------------------TCT-TTAATCA-----ATTTATAT-A-CAA-----------------------------------------------------------------------------------------------------------------AAA------AAGCAAGCAACATAAATAATCAACAG---------------------------CAAG--T---------------------------------------AAT-------------T----AATA-----------------------------------AAC-----------------------------------C----TAAA-TACCAACA---ACAGCAACAAG---------------------------------A----------------A--------CAACA--AC------------------AAAGC--------------------------------------------------------------------------------------------------------------------AAAC-AAACAAACAACGCATACAAAAT-ACA------------------AATTTTACA---AA
droFic1 scf7180000454105:886060-886347 - TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG-----------------------------------------C----------------------------GATCC--------------AAG----CTCTCT-TTAATCGAT--ATTTAGA---AGCCT------C-TAAGTATTCAA------AAGCAAACAAAAG----------------------------------------------------------------------------------------------------------CA--------------------------------------AACTTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTCACC---ACAACAACAAC---------------------------------A----------------A--------CAACT--ACC----CAACAA-----CTTCCCCGA--AT-------------------CTGAA-TCTGAATCTGAATCTGAATCTGAAATCGAAACCGAAACCCAACCGAATCAATCCCC------------------AATAGAAACTAGAGCAGAACATAAACCGCCTGCAAAAG-TCG------------------GCCTCGACCTCGCA
droEle1 scf7180000491249:2839090-2839316 + TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGA----------------------------------------ATC---------------------------GAAAAAA-----AGAAAACATA----CTCTA----------T--------------ACT------C-TAAGTATTAAA--------------------------------AA----------------------------------------------------------------------------AAACCAACAAACAGACC--------------------------------------AACTTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTCACA---------------------------------------------------------------------------ACT--ACT---------------CCTCCCTGAAAAC-------------------CTG----CTG------------AA----AA--------------------------ATCACTAA------------AAAAAATAGAAACTAGAGCAGAATATAAACCGCCTGCAAAAG-TCT------------------GCCTCCACATCGCA
droRho1 scf7180000779552:7356-7596 + TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG----------------------------------------AC----------------------------GAACC--------------CAG----ATCTCTTTTAATCAAT--ATTTAGA---AGCCT------C-TAAGTATTAAACAAAAAAAAC---------------------------------------------------------------------------A------------------------------AAAAACAGACC--------------------------------------AACTTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTCACT---ACAACAACAAC------------------------------------------------------------TACT--ACT---------------CCTCCCTGA--AC-------------------CT-------G------------C------A--------------------------ATCCCCCC---------------AAATAGAAACTAGAGCAGAACATAAACCGCCTGCAAAAG-TCC------------------GCCTCCACATCGCA
droBia1 scf7180000302428:9332341-9332561 - TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG----------------------------------------AC----------------------------GATCG--------------AGG----CTCTCCTT---------------------------------TAAGTACTCAA--------------------------------GT-----------------------------AA-------------A----------------------------------------ACCAGACC--------------------------------------AACCTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTCACC---ACAACAACAAC------------------------------------------------------------TACT--ACT---------------CCTCCCTGA--AC-------------------CTGAAACCCG------------A------A------------A---------AT--GTCCCCCC---------------GAATAGAAACTAGAGCAGAACATAAACCGCCTGCAAAAG-TCC------------------GCCTCCACATCGCA
droTak1 scf7180000415857:335272-335552 - TTCATGAAAAAC-TTTCCATGCT-------GTGTTTGGTGGGTGGGG----------------------------------------AC----------------------------GAACCT--CCAA-------AAGGTCTCTCTCTTTTAATCGTTAAATTTAGA---AGCCTCCTCCTC-CAAGTATATA------------------------------------------------------------TATTAA-------------A----------------------------------------AACAGACC--------------------------------------AACTTAACACC--------------AATTCTTCTCTTGC----TGCG-TACTCACA---ACTACAACAAC---------------------------------A----------------A--------CAACT--ACT---------------ACTCCCTGA--AC-------------------CT-------G------------AA----AAATCCAA--CAAAACCCAAAACAAAAAAAAA---C---------------AAATAGAAACTAGAACAGAACATAAATCGCCTGCAAAAG-TCC------------------GCCTCCACATCGCA
droEug1 scf7180000409466:288110-288366 - TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG----------------------------------------AA----------------------------AGA---------AGA----AAG----CTCTCTTTTAATCGAT--ATTTAGA---AGCCT------C-TAAGTATTAAA------------------------------------------------------------------------------A----------------------------------------AACAGAAC--------------------------------------AACCTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTCACC---ACAACAACAAC---------------------------------A-------ACAACAACTACTA-----CTACT--ACT---------------ACTCCCTGA--AC-------------------CTGAA-CCTGAACCTG------A------TA-------------------------TTCCCCAA---------------AAATAGAATCTAGACCAGAACATAAACCGCCTGCAAAAG-TCC------------------GCCTCCACATCGCA
dm3 chr3L:2562794-2563034 - TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG----------------------------------------AC----------------------------GAAACA-------------AAG----CTCTCTTTTAATCGAT--ATTTAGA---TGCCT------C-TAAGTATTAAA--------------------------------AAAAAAAA---------------------------------------------A------------------------------AAAAACAGACC--------------------------------------AACCTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTTACT---ACAACAACAAC---------------------------------T----------------A--------CTACT--CCT---------------CCTACCTGA--AC-------------------CC-------G------------A------A--------------------------ATCCCC-----------------AAATAGAAACTAGAGCAGAACATAAACCGCCTGCAAAAG-TCC------------------GCATCCACATCGCA
droSim2 3l:2450271-2450497 - dsi_1846 TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG----------------------------------------AC----------------------------GAACC--------------AAG----CTCTCTTTTAATCGAT--ATTTAGA---TGCCT------C-TAAGTATTAA-------------------------------------------------------------------------------A----------------------------------------AACAGACC--------------------------------------AACCTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTTACT---ACAACAACAAC---------------------------------A----------------A--------CTACT--ACT---------------CCTCCCTGA--AC-------------------CC-------G------------A------A--------------------------ATCCCC------------------CATAGAAACTAGAGCAGAACATAAACCGCCTGCAAAAG-TCC------------------GCATCCACATCGCA
droSec2 scaffold_2:2583412-2583638 - dse_1001 TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG----------------------------------------AC----------------------------GAACC--------------AAG----CTCTCTTTTAATCGAT--ATTTAGA---TGCCT------C-TAAGTATTAA-------------------------------------------------------------------------------A----------------------------------------AACAGACC--------------------------------------AACCTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTTACT---ACAACAACAAC---------------------------------A----------------A--------CTACT--ACT---------------CCTCCCTGA--AC-------------------CC-------G------------A------A--------------------------ATCCCC------------------AATAGAAACTAGAGCAGAACATAAACCGCCTGCAAAAG-TCC------------------GCATCCACATCGCA
droYak3 3L:9376643-9376878 + TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG----------------------------------------AT----------------------------GAAGC--------------AAG----CTCTCTTTTAATCGAT--ATTTAGA---TGCCT------C-TAAGTATTAA-------------------------------------------------------------------------------A----------------------------------------AACAGACCAAC-----------------------------------AACCTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTTACT---ACAACAACAAC---------------------------------C----------------A--------CTACT--ACT---------------CCTCCCTGA--AC-------------------CTGAA-CCTG------------A------A--------------------------ATCCCC------------------AATAGAAACTAGAGCAGAACATAAACCGCCTGCAAAAG-TCC------------------GCCTCCACATCGCA
droEre2 scaffold_4784:2578987-2579217 - TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG----------------------------------------AC----------------------------GAACC--------------AAG----CTCTCTTTTAATCGAT--ATTTAGA---TGCCT------C-TAAGTATTAAA------------------------------------------------------------------------------A----------------------------------------AACAGACC--------------------------------------AACCTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTTACT---ACAACAACAAC---------------------------------A----------------ACTA-----CTACT--ACT---------------CCTCCCTGA--AC-------------------CT-------G------------A------A--------------------------ATCCCC------------------AATAGAAACTAGAGCAGAACATAAACCGCCTGCAAAAG-TCC------------------GCCTCCACATCGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TTCATGAAAAAC-TTTCCATGCG-------GTTT-------------------------TTT----T-TTTCATA-CCTGGGTGTAGATAGCC---------------------------AAAAA----AAA----AA---------------------------------------------------------------------------------------------------ACAACTTAGAATGTAGAAATG--TAAAATGC-AAGT---------------------------GAACAAAACCAA--AACAAACA-AA-----------------------------------AACCTAACAAC--------------AATTCTTCTCTTGC----GCTGATACTCACA---ACAACAACAAC---------------------------------A----------------A--------CAACC--ACA---------------ACATGTTAA--AC------------------------------------------------A--------------------------ACTG---T---------------AAACAGAAACTAGAACAAAACGTAAATCGCTTACAAAAA-TCC------------------GCTTCCACTTCGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................CTCACA---ACAACAACAAC---------------------------------A----------------A--------CAACC--............................................................................................................................................................................................................2430.331100000
droVir3
TTCATGAAAAAC-TTTCCATGCG-------GTTT-------------------------TTT------TTCCATA-CCTGGGTGCAGATAGCC---------------------------AA----------------A-------------------------------------------ATAAAGTATTAAA--------------------------------AAAAAAAACAACAATTTAGCCTGTAGAACTG--TAAAATGC-AAGC---------------------------AAA-------------C----AAAA-----------------------------------AACCTAACAAC--------------AATTCTTCTCTTGC----GCTACTACTCACA---ACAACAACAAC---------------------------------G----------------A--------CAACA--ACT----------------------------------------------------------------------------------------------------------G---T---------------AAACAGAAATTAGAACAAAACATAAACCGCTTACAAAAA-TCG------------------GCATCCACATCGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................ATTTAGCCTGTAGAACTG--TAAAATGC-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000000000000000000000000000010000000001000
droGri2
TTCATGAAAAAC-TTTCCATGCTACAAGCGGTTT-------------------------TTTTTTGTT--GTATACCCTGGGC----AA----------------------------GAAAC--------------AA-----------------------ATTTAG-------------------------------------------------------------------------------ACTGTAGAAATG--TA--ATGC-AACC---------------------------GA----------------------------------------------------------AACCTAACAAC--------------AATTCTTCTCTTGC----GCTGTTACTCACA---ACTACAACAATTAT-TTG--------------------------T----ACAACAACAACAACGA-----CAACC--ACA---------------TCTACATGA--AC------------------------------------------------A--------------------------ACTG---T---------------AAACAGAAATTAGAACAAAACGTAAATCGCTTACAAAAA-TCC------------------GCTTCCACCTCGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TTCATAAGAAATGTTTCCATGCT-------GT----TGCAGC-----AATCTACTATTTT------TTTTCTA-T-GGTGGGG----A---------------------------------------------------------------------AT--ATTAATT---TGCCTA---G-CTAAAGTAATG-------------------------------------------------------------------CA--ACA-GACAAAAAAAAAAAAAGACAAAATAATTAACACAAAAAAATCAA-------AAC--------------------------------------AAAAAAATACC-----A--------AATTCTTTTCTTGCGCGTTGCC-TACTTACC---AAACT-GTAAA---ACTGCCCCGAACTCCCCCTTTACCACCTACCACCACCAAC--CAACACCTCTGACCCTACCCAACCTCTATTCCAACTGC--------------------------------------------------------------------------------------------G---A---------------CAACAGATACTAGATCAGGGTATAAATCGCTTGCAAAAA-TCA------------------GCCTCGACATCACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................C-TACTTACC---AAACT-GTAAA---ACTGCCCC...................................................................................................................................................................................................................................................................2711.00110000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGATCAGGGTATAAAT................................................1911.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATAAATCGCTTGCAA.......................................1911.00101000
......AGAAATGTTTCCATGCT-------GT----TG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AA---ACTGCCCCGAACTCCC...........................................................................................................................................................................................................................................................1811.00101000
dp5
AGGAAGAAAAAA-ATGT------------G-------------------TCT-TGAATTT------TTTTCAC-A-AGT-----------------------------------------------------------------------------------------------------------------GAA------AAGCAAACAAAACGAATAATCACAAA---------------------------AATG--CA--ATA-AAAGC---------------------------AAA--------------G---AATAAAACTAAAATTATAACTGTGTTAACGAAG------------------------------------------------------GAGAAGCA---GCAGCAGCAGC---------------------------------A----------------G--------CAGT----------------------------------------------------------------------------------------------------------------CGC------------------AGAAGGAGTAGAGGTAGAAG--AGAGTAGCAGCAAAAGCACACACTCTCTTGCACACACTCTCTCCCCCTCACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------------------------------------------------------------------------------------CGC------------------AGAAGGAGTAGAGGTAGAAG--....................................................2412.0020000000200
............................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------------------------------A----------------G--------CAGT----------------------------------------------------------------------------------------------------------------CGC------------------AGAAGGAGT.................................................................2012.0020000000200
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGAAG--AGAGTAGCAGCAAAAGC...................................2511.0010100000000
.................................................................................................................................................................................................................................................................................................................................................TAACTGTGTTAACGAAG------------------------------------------------------GAGAAG..............................................................................................................................................................................................................................................................................................2311.0010000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGCAAAAGCACACA..............................1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................ATAACTGTGTTAACGAAG------------------------------------------------------GAGAA...............................................................................................................................................................................................................................................................................................2311.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACACACTCTCTCCCC......1811.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACACACTCTCTCCCCCT....2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................TATAACTGTGTTAACGAAG------------------------------------------------------GAGAAGCA---.........................................................................................................................................................................................................................................................................................2711.0011000000000
..................................................................................................................................................................................................................................................................................................................................................AACTGTGTTAACGAAG------------------------------------------------------GAGAAGC.............................................................................................................................................................................................................................................................................................2311.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................GAAG------------------------------------------------------GAGAAGCA---GCAGCAGCAGC---------------------------------A----------------............................................................................................................................................................................................................................2411.0010000001000
..........................................................................................................................................................................................................................................................................................................................................................TAACGAAG------------------------------------------------------GAGAAGCA---GCAGCAGCA................................................................................................................................................................................................................................................................................2511.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------------------AGAAGGAGTAGAGGTAGAAG--AGA.................................................2511.0010100000000
...................................................................................................................................................................................................................................................................................................................................................ACTGTGTTAACGAAG------------------------------------------------------GAGAAGCA---G........................................................................................................................................................................................................................................................................................2411.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------A----------------G--------CAGT----------------------------------------------------------------------------------------------------------------CGC------------------AGAAGGAGTAGAG.............................................................2311.0010000000001
..................................................................................................................................................................................................................................................................................................................................................AACTGTGTTAACGAAG------------------------------------------------------GAGAAGCA---.........................................................................................................................................................................................................................................................................................2411.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---GCAGCAGCAGC---------------------------------A----------------G--------CAGT----------------------------------------------------------------------------------------------------------------CGC------------------..........................................................................2490.1110100000000
.................................................................................................................................................................................................................................................................................................................................................................G------------------------------------------------------GAGAAGCA---GCAGCAGCAGC---------------------------------A----------------............................................................................................................................................................................................................................2190.1110000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGC---------------------------------A----------------G--------CAGT----------------------------------------------------------------------------------------------------------------CGC------------------A.........................................................................20180.0610100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC---------------------------------A----------------G--------CAGT----------------------------------------------------------------------------------------------------------------CGC------------------A.........................................................................19200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGC---------------------------------A----------------G--------CAGT----------------------------------------------------------------------------------------------------------------CGC------------------..........................................................................19200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCA---GCAGCAGCAGC---------------------------------A----------------............................................................................................................................................................................................................................19200.0510000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGCA---GCAGCAGCAGC---------------------------------A----------------G--------...................................................................................................................................................................................................................21200.0510100000000
droPer2
AGGAAGAAAAAA-ATGT------------G-------------------TCT-TGAATTT------TTTTCAC-A-AGT-----------------------------------------------------------------------------------------------------------------GAA------AAGCAAGCAAAACGAATAATCACAAA---------------------------AATG--CA--ATA-AAAGC---------------------------AAA--------------G---AATAAAACTAAAATTATAACTGTGTTAACGAAG------------------------------------------------------GAGAAGCA---GCAGCAG---------------------------------------------------------------CAGT----------------------------------------------------------------------------------------------------------------CGC------------------AGAAGGAGTAGATGTAGAAG--AGAGTAGCAGCAAAAGCACACACTCTCTTGCACACACTCTCTCCCCCTCACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------------------------------------------------------------------------------------CGC------------------AGAAGGAGTAGATGTAGAAG--AGA.................................................2711.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---------------------------------------------------------------CAGT----------------------------------------------------------------------------------------------------------------CGC------------------AGAAGGAGTAGAT.............................................................2311.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT----------------------------------------------------------------------------------------------------------------CGC------------------AGAAGGAGTAGAT.............................................................1811.001100000
...........................................................................................................................................................................................................................................................................................................................................................AACGAAG------------------------------------------------------GAGAAGCA---GCAGCAG---------------------------------------------------------------CAG................................................................................................................................................................................................................2511.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGCAAAAGCACACACTCTCTTG......................2611.001010000
droAna3
TTCATGAAAGAC-TTTCCATGCT-------GTGT--GGTGGGAGGGG----------------------------------------ATC-CTAGTCTAAAGTCCTAGAGTCCTAGAGGCCT--------------AGG----CTCTT-TCTAAT-GAT--ATCTAGAAAACGCCT------C-TAAGTATGCA-----------------------------------------------------------------------------------------------------------------------------ACC--------------------------------------GACTTAACACA---------------CTTCTTCTCTTGC----TGCG-TACTCACC--AACAACAACAAC---------------------------------A----ACAACAACAACAACTA-----CAACCAAACATCTACAACAACTACTACTCCCTGA--ATCCAAAAAATATGTTAAATCCTGAATCCTG------------A------A--------------------------ACCCCC-TGACAAAAAAAAAAAAAAACAGAAACAAGAACAGAACGCCAATCGCCTTCAAAAG-TCC------------------GCCTCCACATCCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAG-TCC------------------GCCTCCACATC...2011.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACAGAAACAAGAA............................................................1811.001001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAG-TCC------------------GCCTCCACATC...1811.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAACAGAAACAAGA.............................................................2020.501010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----ACAACAACAACAACTA-----CAAC...............................................................................................................................................................................................................21190.112020000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---------------------------------A----ACAACAACAACAACTA-----CAAC...............................................................................................................................................................................................................25110.091010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACAGAAACAAGAAA...........................................................19200.051001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC---------------------------------A----ACAACAACAACAACT.........................................................................................................................................................................................................................21200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAACTA-----CAAC...............................................................................................................................................................................................................20200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACAGA....................................................................18200.051010000
droBip1
TGTGTGTAAATA-GATAAAAA------------------------------------------------------------------------------------------------AAGAG--------------AAA----TTTATAAAAAATAAAT--TTTAAAA---TATGA------T-AAAAATTTGT-------------------------------------------------------------------------------A----------------------------------------GAATAACA---AAAATAACAAAATAAATGTGACAAAAAAAAGAAAGAAATGGAAAATAGTGCAAGTGCAGCAGTTCGGCTGGCAT----ATTGTTGCAAGTGGCAGCAACAACAAC---------------------------------A----------------A--------CAACA--ACA---------------ACCTACCAG--CA------------------------------------------------A-----------ACTAAAA--------AATGAA------------------A---------AAGAAAAATTATAAATAAATAGGAAAAA-T----------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAACGAA-GCAA-AAACCAGAGTACAAAAA-------------------TCT-TTAATCA-----ATTTATAT-A-CAA-----------------------------------------------------------------------------------------------------------------AAA------AAGCAAGCAACATAAATAATCAACAG---------------------------CAAG--T---------------------------------------AAT-------------T----AATA-----------------------------------AAC-----------------------------------C----TAAA-TACCAACA---ACAGCAACAAG---------------------------------A----------------A--------CAACA--AC------------------AAAGC--------------------------------------------------------------------------------------------------------------------AAAC-AAACAAACAACGCATACAAAAT-ACA------------------AATTTTACA---AASizeHit CountTotal NormTotal
No Reads
droFic1
TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG-----------------------------------------C----------------------------GATCC--------------AAG----CTCTCT-TTAATCGAT--ATTTAGA---AGCCT------C-TAAGTATTCAA------AAGCAAACAAAAG----------------------------------------------------------------------------------------------------------CA--------------------------------------AACTTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTCACC---ACAACAACAAC---------------------------------A----------------A--------CAACT--ACC----CAACAA-----CTTCCCCGA--AT-------------------CTGAA-TCTGAATCTGAATCTGAATCTGAAATCGAAACCGAAACCCAACCGAATCAATCCCC------------------AATAGAAACTAGAGCAGAACATAAACCGCCTGCAAAAG-TCG------------------GCCTCGACCTCGCASizeHit CountTotal NormTotal
No Reads
droEle1
TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGA----------------------------------------ATC---------------------------GAAAAAA-----AGAAAACATA----CTCTA----------T--------------ACT------C-TAAGTATTAAA--------------------------------AA----------------------------------------------------------------------------AAACCAACAAACAGACC--------------------------------------AACTTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTCACA---------------------------------------------------------------------------ACT--ACT---------------CCTCCCTGAAAAC-------------------CTG----CTG------------AA----AA--------------------------ATCACTAA------------AAAAAATAGAAACTAGAGCAGAATATAAACCGCCTGCAAAAG-TCT------------------GCCTCCACATCGCASizeHit CountTotal NormTotal
No Reads
droRho1
TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG----------------------------------------AC----------------------------GAACC--------------CAG----ATCTCTTTTAATCAAT--ATTTAGA---AGCCT------C-TAAGTATTAAACAAAAAAAAC---------------------------------------------------------------------------A------------------------------AAAAACAGACC--------------------------------------AACTTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTCACT---ACAACAACAAC------------------------------------------------------------TACT--ACT---------------CCTCCCTGA--AC-------------------CT-------G------------C------A--------------------------ATCCCCCC---------------AAATAGAAACTAGAGCAGAACATAAACCGCCTGCAAAAG-TCC------------------GCCTCCACATCGCASizeHit CountTotal NormTotal
No Reads
droBia1
TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG----------------------------------------AC----------------------------GATCG--------------AGG----CTCTCCTT---------------------------------TAAGTACTCAA--------------------------------GT-----------------------------AA-------------A----------------------------------------ACCAGACC--------------------------------------AACCTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTCACC---ACAACAACAAC------------------------------------------------------------TACT--ACT---------------CCTCCCTGA--AC-------------------CTGAAACCCG------------A------A------------A---------AT--GTCCCCCC---------------GAATAGAAACTAGAGCAGAACATAAACCGCCTGCAAAAG-TCC------------------GCCTCCACATCGCASizeHit CountTotal NormTotal
No Reads
droTak1
TTCATGAAAAAC-TTTCCATGCT-------GTGTTTGGTGGGTGGGG----------------------------------------AC----------------------------GAACCT--CCAA-------AAGGTCTCTCTCTTTTAATCGTTAAATTTAGA---AGCCTCCTCCTC-CAAGTATATA------------------------------------------------------------TATTAA-------------A----------------------------------------AACAGACC--------------------------------------AACTTAACACC--------------AATTCTTCTCTTGC----TGCG-TACTCACA---ACTACAACAAC---------------------------------A----------------A--------CAACT--ACT---------------ACTCCCTGA--AC-------------------CT-------G------------AA----AAATCCAA--CAAAACCCAAAACAAAAAAAAA---C---------------AAATAGAAACTAGAACAGAACATAAATCGCCTGCAAAAG-TCC------------------GCCTCCACATCGCASizeHit CountTotal NormTotal
No Reads
droEug1
TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG----------------------------------------AA----------------------------AGA---------AGA----AAG----CTCTCTTTTAATCGAT--ATTTAGA---AGCCT------C-TAAGTATTAAA------------------------------------------------------------------------------A----------------------------------------AACAGAAC--------------------------------------AACCTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTCACC---ACAACAACAAC---------------------------------A-------ACAACAACTACTA-----CTACT--ACT---------------ACTCCCTGA--AC-------------------CTGAA-CCTGAACCTG------A------TA-------------------------TTCCCCAA---------------AAATAGAATCTAGACCAGAACATAAACCGCCTGCAAAAG-TCC------------------GCCTCCACATCGCASizeHit CountTotal NormTotal
No Reads
dm3
TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG----------------------------------------AC----------------------------GAAACA-------------AAG----CTCTCTTTTAATCGAT--ATTTAGA---TGCCT------C-TAAGTATTAAA--------------------------------AAAAAAAA---------------------------------------------A------------------------------AAAAACAGACC--------------------------------------AACCTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTTACT---ACAACAACAAC---------------------------------T----------------A--------CTACT--CCT---------------CCTACCTGA--AC-------------------CC-------G------------A------A--------------------------ATCCCC-----------------AAATAGAAACTAGAGCAGAACATAAACCGCCTGCAAAAG-TCC------------------GCATCCACATCGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAACATAAACCGCCTGC.........................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGC----TGCG-TACTTACT---ACAAC....................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTGA--AC-------------------CC-------G------------A------A--------------------------ATCCCC-----------------AAAT.......................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGAAACTAGAGCAGAAC......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTAGAGCAGAACATAAACCGCCTGC.........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TCC------------------GCATCCACATCGCA1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGCAGAACATAAACCGCC............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TCTTGC----TGCG-TACTTACT---ACAACAACAAC---------------------------------.............................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------A--------CTACT--CCT---------------CCTACCTGA--AC-------------------..........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................T--ATTTAGA---TGCCT------C-TAAGTATTAAA--------------------------------AAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGA--AC-------------------CC-------G------------A------A--------------------------ATCCCC-----------------AAATAGAAAC.................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAACATAAACCGCCTGCA........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------CCTACCTGA--AC-------------------CC-------G------------A------A--------------------------ATCCCC-----------------AAATA......................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACCGCCTGCAAAAG-TCC------------------..............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............TTCCATGCT-------GT----GGTGGGTGGGG----------------------------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................AAAAAAA---------------------------------------------A------------------------------AAAAACAGACC--------------------------------------AA..................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATAAACCGCCTGCAAAA.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............TTTCCATGCT-------GT----GGTGGGTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................AAAAAAAA---------------------------------------------A------------------------------AAAAACAGACC--------------------------------------AA..................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................AAA--------------------------------AAAAAAAA---------------------------------------------A------------------------------AAAAACAGACC--------------------------------------....................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------CCTACCTGA--AC-------------------CC-------G------------A------A--------------------------A.................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TACTTACT---ACAACAACAAC---------------------------------T----------------A--------CTACT--............................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TGCT-------GT----GGTGGGTGGGG----------------------------------------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CT---ACAACAACAAC---------------------------------T----------------A--------CTACT--............................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................AAA--------------------------------AAAAAAAA---------------------------------------------A------------------------------AAAAAC...............................................................................................................................................................................................................................................................................................................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GTATTAAA--------------------------------AAAAAAAA---------------------------------------------A------------------------------AA...................................................................................................................................................................................................................................................................................................................................................................................................1950.2010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TATTAAA--------------------------------AAAAAAAA---------------------------------------------A------------------------------AAAAAC...............................................................................................................................................................................................................................................................................................................................................................................................2290.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TTAAA--------------------------------AAAAAAAA---------------------------------------------A------------------------------AAAAA................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TAAA--------------------------------AAAAAAAA---------------------------------------------A------------------------------AAAAAC...............................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AGTATTAAA--------------------------------AAAAAAAA---------------------------------------------A------------------------------AAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG----------------------------------------AC----------------------------GAACC--------------AAG----CTCTCTTTTAATCGAT--ATTTAGA---TGCCT------C-TAAGTATTAA-------------------------------------------------------------------------------A----------------------------------------AACAGACC--------------------------------------AACCTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTTACT---ACAACAACAAC---------------------------------A----------------A--------CTACT--ACT---------------CCTCCCTGA--AC-------------------CC-------G------------A------A--------------------------ATCCCC------------------CATAGAAACTAGAGCAGAACATAAACCGCCTGCAAAAG-TCC------------------GCATCCACATCGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTAGAGCAGAACATAAACCGCC............................................2411.00101000000000000000
droSec2
TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG----------------------------------------AC----------------------------GAACC--------------AAG----CTCTCTTTTAATCGAT--ATTTAGA---TGCCT------C-TAAGTATTAA-------------------------------------------------------------------------------A----------------------------------------AACAGACC--------------------------------------AACCTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTTACT---ACAACAACAAC---------------------------------A----------------A--------CTACT--ACT---------------CCTCCCTGA--AC-------------------CC-------G------------A------A--------------------------ATCCCC------------------AATAGAAACTAGAGCAGAACATAAACCGCCTGCAAAAG-TCC------------------GCATCCACATCGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCAGAACATAAACCGCCTGC.........................................2311.0010010
..................................................................................................................................................................................................................................................................................................................................................................................C---------------ATTCTTCTCTTGC----TGCG-TACT................................................................................................................................................................................................................................................................................................2211.0010001
droYak3
TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG----------------------------------------AT----------------------------GAAGC--------------AAG----CTCTCTTTTAATCGAT--ATTTAGA---TGCCT------C-TAAGTATTAA-------------------------------------------------------------------------------A----------------------------------------AACAGACCAAC-----------------------------------AACCTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTTACT---ACAACAACAAC---------------------------------C----------------A--------CTACT--ACT---------------CCTCCCTGA--AC-------------------CTGAA-CCTG------------A------A--------------------------ATCCCC------------------AATAGAAACTAGAGCAGAACATAAACCGCCTGCAAAAG-TCC------------------GCCTCCACATCGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCAGAACATAAACCGCC............................................2011.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTGA--AC-------------------CTGAA-CCTG------------A------A--------------------------ATCCCC------------------..........................................................................2611.00110000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATAAACCGCCTGCAAAAG-T..................................2211.00101000000000
droEre2
TTCATGAAAAAC-TTTCCATGCT-------GT----GGTGGGTGGGG----------------------------------------AC----------------------------GAACC--------------AAG----CTCTCTTTTAATCGAT--ATTTAGA---TGCCT------C-TAAGTATTAAA------------------------------------------------------------------------------A----------------------------------------AACAGACC--------------------------------------AACCTAACACC---------------ATTCTTCTCTTGC----TGCG-TACTTACT---ACAACAACAAC---------------------------------A----------------ACTA-----CTACT--ACT---------------CCTCCCTGA--AC-------------------CT-------G------------A------A--------------------------ATCCCC------------------AATAGAAACTAGAGCAGAACATAAACCGCCTGCAAAAG-TCC------------------GCCTCCACATCGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAAAAG-TCC------------------GCCTCCA.......2011.0010000100
........................................GGTGGGG----------------------------------------AC----------------------------GAACC--------------AAG----C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000

Generated: 05/18/2015 at 02:26 AM