ID:

dmo_233

 Coordinate:

scaffold_6473:13797388-13797475 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.0 -16.0 -15.5

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Galileo_DMDNAP-
mature
star
  1. dmo_233  scaffold_6473:13797394-13797419 +
  2. scaffold_6473:13804723-13804748 +

Sense Strand Reads

ACTGATTAAGAACAAATTTCCTATGTTCATAGCAAGGGTGGGTTGGAGAAAACCATTCAGTATCCAAAGTTGATTTTTCTGTAGCATGCATGCAGTACAGAACAATGTCTCCTTTAATACGTGGGATATATGGTTTCTTATCGAAAATTTTCTTAAATGTTTCAAAATGCAGTTTAATTAAATAGTGA
*****************************************...........((((...((((..((((..(((..((((((((((....)))..)))))))....)))..)))).))))))))...************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V056
head
......................................................................................TGCATGCAGTACAGAACAATGTCTCC............................................................................ 26 0 1 30.00 30 18 12 0 0 0
................................................................................................................TTTAATACGTGGGATATATGGTTTC................................................... 25 0 4 29.50 118 50 14 51 2 1
................................................................................................................TTTAATACGTGGGATATATGGTTTCT.................................................. 26 0 4 17.25 69 39 16 13 1 0
..................................................................................................................TAATACGTGGGATATATGGTTTCTTA................................................ 26 0 3 17.00 51 31 3 15 2 0
..................................................................................................................TAATACGTGGGATATATGGTTTCTT................................................. 25 0 4 15.25 61 43 14 4 0 0
......................................................................................TGCATGCAGTACAGAACAATGTCTCCTT.......................................................................... 28 0 1 15.00 15 15 0 0 0 0
................................................................................................................TTTAATACGTGGGATATATGGTTT.................................................... 24 0 4 14.50 58 22 19 17 0 0
................................................................................................................TTTAATACGTGGGATATATGGTTTCTTA................................................ 28 0 3 10.33 31 15 1 15 0 0
.................TTCCTATGTTCATAGCAAGGGTGGGT................................................................................................................................................. 26 0 2 10.00 20 10 3 7 0 0
......................................................................................TGCATGCAGTACAGAACAATGTCTCCT........................................................................... 27 0 1 9.00 9 5 4 0 0 0
................................................................................................................TTTAATACGTGGGATATATGGTTTCTT................................................. 27 0 4 8.75 35 20 9 6 0 0
.................................................................................................................................................................TCAAAATGCAGTTTAATTAAATAGT.. 25 0 4 6.75 27 16 4 6 1 0
................TTTCCTATGTTCATAGCAAGGGTGGGT................................................................................................................................................. 27 0 2 6.00 12 6 0 6 0 0
................TTTCCTATGTTCATAGCAAGGGTGGG.................................................................................................................................................. 26 0 2 5.50 11 8 0 3 0 0
................................................................................................................TTTAATACGTGGGATATATGGTT..................................................... 23 0 4 5.00 20 12 4 4 0 0
........................................................TCAGTATCCAAAGTTGATTTTTCTGT.......................................................................................................... 26 0 2 4.00 8 7 0 0 1 0
......................................................................................TGCATGCAGTACAGAACAATGTCTC............................................................................. 25 0 1 4.00 4 2 1 1 0 0
......................................................................................TTCATGCAGTACAGAACAATGTCTCC............................................................................ 26 1 1 4.00 4 0 4 0 0 0
................TTTCCTATGTTCATAGCAAGGGTGG................................................................................................................................................... 25 0 2 3.50 7 6 1 0 0 0
.................................................................................................................................................................TCAAAATGCAGTTTAATTAAATAGTGA 27 0 4 3.00 12 9 1 1 1 0
..................................................................................................................TAATACGTGGGATATATGGTTTCT.................................................. 24 0 4 3.00 12 8 4 0 0 0
...............................................................................................TACAGAACAATGTCTCCTTTAATACG................................................................... 26 0 1 3.00 3 2 0 1 0 0
.................................................................................................................................................................TCAAAATGCAGTTTAATTAAATAGTG. 26 0 4 2.75 11 10 0 0 1 0
.................TTCCTATGTTCATAGCAAGGGTGGGTT................................................................................................................................................ 27 0 2 2.50 5 5 0 0 0 0
.................................................................................................................................................................TCAAAATGCAGTTTAATTAAATAG... 24 0 4 2.50 10 10 0 0 0 0
................................................................................................................TTTAATACGTGGGATATATGGT...................................................... 22 0 4 2.25 9 0 1 5 3 0
..................................................................................................................TAATACGTGGGATATATGGTTTCTTATC.............................................. 28 0 3 2.00 6 5 0 1 0 0
......................................................................................TTCATGCAGTACAGAACAATGTCTCCT........................................................................... 27 1 1 2.00 2 0 2 0 0 0
......................................................................................TGCATGCAGTACAGAACAATGTCT.............................................................................. 24 0 2 2.00 4 2 2 0 0 0
.......................................................TTCAGTATCCAAAGTTGATTTTTCTG........................................................................................................... 26 0 2 2.00 4 3 0 1 0 0
........................................................TCAGTATCCAAAGTTGATTTTTCTG........................................................................................................... 25 0 2 2.00 4 4 0 0 0 0
..........................................................................................TGCAGTACAGAACAATGTCTCC............................................................................ 22 0 1 2.00 2 2 0 0 0 0
.................................................................................TAGCATGCATGCAGTACAGAACAATGTC............................................................................... 28 0 2 1.50 3 2 1 0 0 0
................................................................CAAAGTTGATTTTTCTGTAGCA...................................................................................................... 22 0 2 1.50 3 3 0 0 0 0
................................................................CAAAGTTGATTTTTCTGTAGCATGC................................................................................................... 25 0 2 1.50 3 1 2 0 0 0
.................TTCCTATGTTCATAGCAAGGGTGGG.................................................................................................................................................. 25 0 2 1.50 3 2 1 0 0 0
................TTTCCTATGTTCATAGCAAGGGTGGGTT................................................................................................................................................ 28 0 2 1.50 3 1 1 1 0 0
................................................................................................................TTTAATACGTGGGATATATGGTTTCTC................................................. 27 1 4 1.50 6 1 0 5 0 0
.................................................................................................................TTAATACGTGGGATATATGGTTTCTTA................................................ 27 0 3 1.33 4 2 0 2 0 0
...................................................................................................................AATACGTGGGATATATGGTTTCTTA................................................ 25 0 3 1.33 4 4 0 0 0 0
................................................................................................................TTTAATACGTGGGATATATGG....................................................... 21 0 4 1.25 5 1 0 4 0 0
.................................................................................................................TTAATACGTGGGATATATGGTTTCT.................................................. 25 0 4 1.25 5 4 1 0 0 0
...................................................................................................................AATACGTGGGATATATGGTTTCTT................................................. 24 0 4 1.25 5 5 0 0 0 0
.......................................................................................GCATGCAGTACAGAACAATGTCTCC............................................................................ 25 0 1 1.00 1 1 0 0 0 0
.......................................................................................GCATGCAGTACAGAACAATGTCTCCT........................................................................... 26 0 1 1.00 1 1 0 0 0 0
..............................................................................................................CCTATAATACGTGGGATATATGGC...................................................... 24 2 1 1.00 1 0 1 0 0 0
..........................................................................................TGCAGTACAGAGCAATGTCTCCTTTA........................................................................ 26 1 1 1.00 1 1 0 0 0 0
......................................................................................TGAATGCAGTACAGAACAATGTCTCC............................................................................ 26 1 1 1.00 1 0 1 0 0 0
................................................................................................................TTTAATACGTGGGATATATGGTTTCC.................................................. 26 1 4 1.00 4 0 2 2 0 0
.......................................................................................GCATGCAGTACAGAACAATGTCTCCTT.......................................................................... 27 0 1 1.00 1 1 0 0 0 0
......................................................................................TGCATGCAGTACAGAACAATGTCTCA............................................................................ 26 1 1 1.00 1 1 0 0 0 0
................................................................................................................TGTAATACGTGGGATATATGGTTTCT.................................................. 26 1 4 1.00 4 0 4 0 0 0
....................................................................................................................................................TTTCTTAAATGTTTCAAAATGCAGTTTAA........... 29 0 1 1.00 1 1 0 0 0 0
...............................................................................................TACAGAACAATGTCTCCTTTAATAC.................................................................... 25 0 1 1.00 1 1 0 0 0 0
..........................................................................................TGCAGTACAGAACAATGTCTCCTT.......................................................................... 24 0 1 1.00 1 0 1 0 0 0
..........................................................................................TGCAGTACAGAACAATGTCTCCTTC......................................................................... 25 1 1 1.00 1 1 0 0 0 0
.............................................GAGAAAACCATTCAGTATCCAAAGTTG.................................................................................................................... 27 0 2 1.00 2 2 0 0 0 0
.....................................................................................ATGCATGCAGTACAGAACAATGTCTC............................................................................. 26 0 1 1.00 1 1 0 0 0 0
.CTGATTAAGAACAAATTTCCTATGT.................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0
..........................................................................................TGCAGTACAGAACAATGTCTCCTTTA........................................................................ 26 0 1 1.00 1 1 0 0 0 0
.......................................................TTCAGTATCCAAAGTTGATTTTTCTGTC......................................................................................................... 28 1 2 1.00 2 1 0 1 0 0
................................................................CAAAGTTGATTTTTCTGTAGCATGCA.................................................................................................. 26 0 2 1.00 2 2 0 0 0 0
......................................................................................TGCATGCAGTACAGAACAATGTCC.............................................................................. 24 1 2 1.00 2 0 2 0 0 0
....................................................................................................................................................TTTCTTAAATGTTTCAAAATGCAGT............... 25 0 1 1.00 1 0 1 0 0 0
............................................................TATCCAAAGTTGATTTTTCTGTAGC....................................................................................................... 25 0 2 1.00 2 1 0 0 1 0
......................................................................................TGCTTGCAGTACAGAACAATGTCTCCTT.......................................................................... 28 1 1 1.00 1 0 1 0 0 0
......................................................................................TGCGTGCAGTACAGAACAATGTCTCC............................................................................ 26 1 1 1.00 1 0 1 0 0 0
.................................................................AAAGTTGATTTTTCTGTAGCATGC................................................................................................... 24 0 2 1.00 2 1 1 0 0 0
.....................................................................................................ACAATGTCTCCTTTAATACGT.................................................................. 21 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................TTTCTTAAATGTTTCAAAATGCAGTT.............. 26 0 1 1.00 1 1 0 0 0 0
..................................................................................................................TAATACGTGGGATATATGGTTT.................................................... 22 0 4 1.00 4 3 0 1 0 0
.................................................................................................................TTAATACGTGGGATATATGGTTTC................................................... 24 0 4 0.75 3 2 1 0 0 0
................................................................................................................TTTAATACGTGGGATATATGGTTC.................................................... 24 1 4 0.75 3 1 1 1 0 0
................................................................................................................TGTAATACGTGGGATATATGGTTTC................................................... 25 1 4 0.75 3 0 3 0 0 0
.................................................................................................................TTAATACGTGGGATATATGGTTTCTT................................................. 26 0 4 0.75 3 2 0 1 0 0
........................................................................................................................................................TTAAATGTTTCAAAATGCAGTTTA............ 24 0 4 0.75 3 3 0 0 0 0
.....................................................................................................................TACGTGGGATATATGGTTTCTTATC.............................................. 25 0 3 0.67 2 0 0 1 1 0
..................................................................................................................TGATACGTGGGATATATGGTTTCTTA................................................ 26 1 3 0.67 2 1 1 0 0 0
................................................................................................................TGTAATACGTGGGATATATGGTTTCTTA................................................ 28 1 3 0.67 2 0 2 0 0 0
....................................................................................................................ATACGTGGGATATATGGTTTCTTA................................................ 24 0 3 0.67 2 2 0 0 0 0
.....................................................................................................................................................TTCTTAAATGTTTCAAAATGCAGTT.............. 25 0 3 0.67 2 2 0 0 0 0
..................TCCTATGTTCATAGCAAGGGTGG................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0
........................................................TCAGTATCCAAAGTTGATTTTTCT............................................................................................................ 24 0 2 0.50 1 0 1 0 0 0
..........................................................AGTATCCAAAGTTGATTTTTCTGTAGCA...................................................................................................... 28 0 2 0.50 1 1 0 0 0 0
.................TTCCTATGTTCATAGCAAGGG...................................................................................................................................................... 21 0 2 0.50 1 0 1 0 0 0
..................................................................................................................TAATACGTGGGATATATGGTTTCTTC................................................ 26 1 4 0.50 2 2 0 0 0 0
.............................TAGCAAGGGTGGGTTGGAGAAAAC....................................................................................................................................... 24 0 2 0.50 1 0 0 1 0 0
.............................................GAGAAAGCCATTCAGTATCCAAAGTTG.................................................................................................................... 27 1 2 0.50 1 1 0 0 0 0
.........................................................CAGTATCCAAAGTTGATTTTTCTG........................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
.................TTCCTATGTTCATAGCAAGGGTGGGC................................................................................................................................................. 26 1 2 0.50 1 0 1 0 0 0
..................................................................................................................TAATACGTGGGATATATGGTTTCTC................................................. 25 1 4 0.50 2 0 2 0 0 0
................................................................CAAAGTTGATTTTTCTGTAGCATG.................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
...............................GCAAGGGTGGGTTGGAGAAAACCA..................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
..................................................AACCATTCAGTATCCAAAGTTGAT.................................................................................................................. 24 0 2 0.50 1 1 0 0 0 0
.................................................................AAAGTTGATTTTTCTGTAGCATG.................................................................................................... 23 0 2 0.50 1 1 0 0 0 0
...............................................................................TGTAGCATGCATGCAGTACAGAACA.................................................................................... 25 0 2 0.50 1 1 0 0 0 0
......................................................................................TGCATGCAGTACAGAACAATGC................................................................................ 22 1 2 0.50 1 0 1 0 0 0
..............................................................TCCAAAGTTGATTTTTCTGTAGCATGC................................................................................................... 27 0 2 0.50 1 0 0 1 0 0
................TGTCCTATGTTCATAGCAAGGGTGGGT................................................................................................................................................. 27 1 2 0.50 1 0 1 0 0 0
.................TGCTTATGTTCATAGCAAGGGTGGG.................................................................................................................................................. 25 2 2 0.50 1 0 1 0 0 0
................TTTCCTATGTTCATAGCAAGGGTGGGTC................................................................................................................................................ 28 1 2 0.50 1 1 0 0 0 0
.................................................................................TAGCATGCATGCAGTACAGAACAATG................................................................................. 26 0 2 0.50 1 1 0 0 0 0
.............................................................................................................................................................TGTTTCAAAATGCAGTTTAATTAAATAG... 28 0 4 0.50 2 2 0 0 0 0
................................................................................................................................................................TTCAAAATGCAGTTTAATTAAATAGT.. 26 0 4 0.50 2 1 0 1 0 0
........................................................TCAGTATCCAAAGTTGATTTTTCTGTC......................................................................................................... 27 1 2 0.50 1 1 0 0 0 0
................................................................................................................TTCAATACGTGGGATATATGGTTT.................................................... 24 1 4 0.50 2 0 2 0 0 0
...................CCTATGTTCATAGCAAGGGTGGGTT................................................................................................................................................ 25 0 2 0.50 1 1 0 0 0 0
................................................................................GTAGCATGCATGCAGTAC.......................................................................................... 18 0 2 0.50 1 1 0 0 0 0
................TTTCCTATGTTCATAGCAAG........................................................................................................................................................ 20 0 2 0.50 1 1 0 0 0 0
....................................................................................CATGCATGCAGTACAGAACAATGTC............................................................................... 25 0 2 0.50 1 0 1 0 0 0
..........................................................AGTATCCAAAGTTGATTTTTC............................................................................................................. 21 0 2 0.50 1 1 0 0 0 0
.................................................................AAAGTTGATTTTTCTGTAGCAT..................................................................................................... 22 0 2 0.50 1 1 0 0 0 0
...................................................ACCATTCAGTATCCAAAGTTGATT................................................................................................................. 24 0 2 0.50 1 1 0 0 0 0
..................TCCTATGTTCATAGCAAGGGTGGGTT................................................................................................................................................ 26 0 2 0.50 1 1 0 0 0 0
................................................................................................................TTTAATACGTGGGATATA.......................................................... 18 0 4 0.50 2 1 1 0 0 0
................TTTCCTATGTTCATAGCAAGGGTG.................................................................................................................................................... 24 0 2 0.50 1 0 1 0 0 0
.........................TTCATAGCAAGGGTGGGTTGG.............................................................................................................................................. 21 0 2 0.50 1 0 1 0 0 0
..................................................................................................................TAATACGTGGGATATATGGTT..................................................... 21 0 4 0.50 2 2 0 0 0 0
................TTTCCTATATTCATAGCAAGGGTGGGT................................................................................................................................................. 27 1 2 0.50 1 0 0 1 0 0
.................TTCCTATGTTCATAGCAAGGGTGG................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
....................................................................................CATGCATGCAGTACAGAACAATG................................................................................. 23 0 2 0.50 1 1 0 0 0 0
.....................TATGTTCATAGCAAGGGTGGGTTG............................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
.CTGATTAAGAACAAATTTCCTATG................................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
.................................................................................TGGCATGCATGCAGTACAGAACAATGTC............................................................................... 28 1 2 0.50 1 0 1 0 0 0
................TTTCCTATGTTCATAGCAAGGGTGGGC................................................................................................................................................. 27 1 2 0.50 1 0 0 1 0 0
......................................................................TGATTTTTCTGTAGCATGCATGCAG............................................................................................. 25 0 2 0.50 1 1 0 0 0 0
.......................................................TTCAGTATCCAAAGTTGATTTTTCT............................................................................................................ 25 0 2 0.50 1 1 0 0 0 0
..................................................................AAGTTGATTTTTCTGTAGCATGCATGC............................................................................................... 27 0 2 0.50 1 1 0 0 0 0
..................................................AACCATTCATTATCCAAAGTTGATT................................................................................................................. 25 1 2 0.50 1 0 1 0 0 0
..................................................................................................................TAATACGTGGGATATATGGTTTC................................................... 23 0 4 0.50 2 2 0 0 0 0
......................................................................................TGCATGCAGTACAGAACAATG................................................................................. 21 0 2 0.50 1 1 0 0 0 0
.................TGCCTATGTTCATAGCAAGGGTGGGTT................................................................................................................................................ 27 1 2 0.50 1 0 1 0 0 0
........................................................TCAGTATCCAAAGTTGATTTT............................................................................................................... 21 0 2 0.50 1 0 1 0 0 0
................TTTCCTGTTTTCATAGCAAGGGTGG................................................................................................................................................... 25 2 2 0.50 1 0 1 0 0 0
...................................................ACCATTCAGTATCCAAAGTTGATTT................................................................................................................ 25 0 2 0.50 1 1 0 0 0 0
.......................................................TTCAGTATCCACAGTTGATTTTTCTG........................................................................................................... 26 1 2 0.50 1 1 0 0 0 0
..................TCCTATGTTCATAGCAAGGGTGGGT................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0
.................................................................AAAGTTGATTTTTCTGTAGCATGCA.................................................................................................. 25 0 2 0.50 1 1 0 0 0 0
................................................................CAAAGTTGATTTTTCTGTAGCATGCATGC............................................................................................... 29 0 2 0.50 1 0 1 0 0 0
..................................................................................................................TAATACGTGGGATATATGGTTTCC.................................................. 24 1 4 0.50 2 0 2 0 0 0
.................................................................................................................TTAATACGTGGGATATATGGTTT.................................................... 23 0 4 0.50 2 2 0 0 0 0
................TTTCCTATGTTCATAGCAAGGG...................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0
......................................................................................TGCATGCAGTACAGAACAATGT................................................................................ 22 0 2 0.50 1 0 0 0 1 0
.................TTCCTATGTTCATAGCAAGGGTG.................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0
..................TCCTATGTTCATAGCAAGGGTGGGTTT............................................................................................................................................... 27 1 2 0.50 1 1 0 0 0 0
........................................................TCAGTATCCAAAGTTGATTTTTCTGTA......................................................................................................... 27 0 2 0.50 1 0 1 0 0 0
......................................................................................TGCATGCAGTACAGAACAATGTCTATA........................................................................... 27 3 2 0.50 1 1 0 0 0 0
.........................TTCATAGCAAGGGTGGGTTGGAG............................................................................................................................................ 23 0 2 0.50 1 1 0 0 0 0
...........................................TGGAGAAAGCCATTCAGTATCCAAAG....................................................................................................................... 26 1 4 0.50 2 1 0 0 1 0
...................................................................................GCCTGCGTACAGTACAGAA...................................................................................... 19 3 20 0.40 8 8 0 0 0 0
....................................................................................................................................................TTTCTTAAATATTTCAAAATGCAGTT.............. 26 1 3 0.33 1 1 0 0 0 0
......................................................................................................................................................TCTTAAATGTTTCAAAATGCAGTTT............. 25 0 3 0.33 1 1 0 0 0 0
................................................................................................................TTTAATACGTGGGATATATGTTTTCTTA................................................ 28 1 3 0.33 1 1 0 0 0 0
......................................................................................................................................................TCTTAAATGTTTCAAAATGCAGTTTA............ 26 0 3 0.33 1 1 0 0 0 0
.....................................................................................................................................................TTCTTAAATGTTTCAAAATGCAGTTTA............ 27 0 3 0.33 1 1 0 0 0 0
.....................................................................................................................TACGTGGGATATATGGTTTCTTATCGAA........................................... 28 0 3 0.33 1 1 0 0 0 0
........................................................................................................................GTGGGATATATGGTTTCTTA................................................ 20 0 3 0.33 1 0 0 1 0 0
..................................................................................................................TAATACTTGGGATATATGGTTTCTTA................................................ 26 1 3 0.33 1 0 1 0 0 0
.....................................................................................................................................................TTCTTAAATGTTTCAAAATGCAGTTTAA........... 28 0 3 0.33 1 1 0 0 0 0
..................................................................................................................TAATACGTGGGATATTTGGTTTCTTA................................................ 26 1 3 0.33 1 0 0 1 0 0
.....................................................................................................................................................TTCTTAAATGTTTCAAAATGCAGTTT............. 26 0 3 0.33 1 1 0 0 0 0
..................................................................................................................TAATACGTGGGGTATATGGTTTCT.................................................. 24 1 4 0.25 1 1 0 0 0 0
...............................................................................................................................................................TTTCAAAATGCAGTTTAATTAAATAG... 26 0 4 0.25 1 1 0 0 0 0
................................................................................................................TGTAATACGTGGGATATATGGTT..................................................... 23 1 4 0.25 1 0 1 0 0 0
................................................................................................................CTTAATACGTGGGATATATGGTTTC................................................... 25 1 4 0.25 1 0 0 1 0 0
.................................................................AAAGATGATTTTTCTGTATCATGC................................................................................................... 24 2 4 0.25 1 0 0 0 1 0
..................................................................................................................TAATACGTGGGATATATGGCTTCT.................................................. 24 1 4 0.25 1 0 1 0 0 0
.............................................GAGAAAACCATTCAGTATCCAAAGTT..................................................................................................................... 26 0 4 0.25 1 0 1 0 0 0
...............................................................................................................GTTTAATACGTGGGATATATGGTTTCT.................................................. 27 1 4 0.25 1 1 0 0 0 0
..................................................................................................................TAACACGTGGGATATATGGTTTCTT................................................. 25 1 4 0.25 1 0 1 0 0 0
...................................................................................................................................................................AAAATGCAGTTTAATTAAATAGTG. 24 0 4 0.25 1 1 0 0 0 0
..................................................................................................................TAAAACGTGGGATATATGGTTTCTT................................................. 25 1 4 0.25 1 0 1 0 0 0
................................................................................................................TTTAATACGTGGGATATAAGGTTTCC.................................................. 26 2 4 0.25 1 0 0 1 0 0
................................................................................................................TTTAATACATGGGATATATGGTTTCT.................................................. 26 1 4 0.25 1 0 1 0 0 0
..................................................AACCATTCAGTATCCAAAGTT..................................................................................................................... 21 0 4 0.25 1 1 0 0 0 0
....................................................................................................................AGACGTGGGATATATGGTTTCTT................................................. 23 1 4 0.25 1 0 1 0 0 0
...................................................................................................................AATACGTGGGATATATGGTTTC................................................... 22 0 4 0.25 1 1 0 0 0 0
................................................................................................................TTTAATACGTGGGATATATGGTTTCTA................................................. 27 1 4 0.25 1 0 1 0 0 0
..................................................................................................................TAATACGTGGGATACATGGTTTCTT................................................. 25 1 4 0.25 1 0 1 0 0 0
................................................................................................................TTTAATACGTGGAATATATGGTTTC................................................... 25 1 4 0.25 1 1 0 0 0 0
...........................................TGGAGAAAACCATTCAGTATCCAAAGTT..................................................................................................................... 28 0 4 0.25 1 0 1 0 0 0
.................................................................................................................TTAATACGTGGGATATATGGTT..................................................... 22 0 4 0.25 1 1 0 0 0 0
...............................................................................................................CTTTAATACGTGGGATATATGGTTTC................................................... 26 0 4 0.25 1 1 0 0 0 0
....................................................................................................................ATACGTGGGATATATGGTTTCTT................................................. 23 0 4 0.25 1 0 1 0 0 0
.................................................................................................................................................................TCAAAATGCAGTTGAATTACATAGT.. 25 2 4 0.25 1 0 0 0 1 0
..................................................................................................................TAATACGTGGGATATATGGT...................................................... 20 0 4 0.25 1 0 0 1 0 0
.................................................................................................................TTAATACGTGAGATATATGGTTTCTT................................................. 26 1 4 0.25 1 1 0 0 0 0
................................................................................................................TTTAATACGTGCGATATATGGTTTCT.................................................. 26 1 4 0.25 1 0 0 1 0 0
.................................................................................................................TTAATACGTGGGATATATGGTTTCTTC................................................ 27 1 4 0.25 1 1 0 0 0 0
..........................................TTGGAGAAAACCATTCAGTATCC........................................................................................................................... 23 0 4 0.25 1 1 0 0 0 0
.....................................................................................................................TACGTGGGATATATGGTTTCTT................................................. 22 0 4 0.25 1 1 0 0 0 0
...................................................................................................................AATACGTGGGATATATGGTT..................................................... 20 0 4 0.25 1 1 0 0 0 0
................................................................................................................TTTAATACGTGGGATATATGTTTT.................................................... 24 1 4 0.25 1 0 1 0 0 0
................................................................................................................TTTAATACGTGGGGTATATGGTTT.................................................... 24 1 4 0.25 1 1 0 0 0 0
................................................................................................................TTTAATACGTAGGATATATGG....................................................... 21 1 4 0.25 1 0 0 1 0 0
.................................................................................................................................................................TCAAAATGCAGTTTAATTAAATA.... 23 0 4 0.25 1 1 0 0 0 0
.........................................................................................................................................................TAAATGTTTCAAAATGCAGTTTAAT.......... 25 0 4 0.25 1 1 0 0 0 0
................................................................................................................TTTAATACGTTGGATATATGGTTTC................................................... 25 1 4 0.25 1 0 0 1 0 0
.......................................................................................................................CGTGGGATATATGGTTTC................................................... 18 0 4 0.25 1 1 0 0 0 0
.......................................................................................................................................................................TGCAGTTTAATTAAATAGTGA 21 0 4 0.25 1 0 0 0 1 0
.................................AACGGTGGGTTAGAGAAA......................................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0
..................................................................................................................TAATACGTGGGATATATGTTTTCTT................................................. 25 1 4 0.25 1 0 1 0 0 0
........................................................................................................................................................TTAAATGTTTCAAAATGCCGTTTA............ 24 1 4 0.25 1 0 1 0 0 0
................................................................................................................TGTAATACTTGGGATATATGGTTT.................................................... 24 2 4 0.25 1 0 1 0 0 0
.................................................................................................................................................................TCAAAATGCAGTTTAATTAAATAGTTA 27 1 4 0.25 1 0 0 0 1 0
................................................................................................................TTTAATACGTGCGATATATGGTTTC................................................... 25 1 4 0.25 1 1 0 0 0 0
......................................................................................................................ACGTGGGATATATGGTTTC................................................... 19 0 4 0.25 1 1 0 0 0 0
................................................................................................................TTTAATACGTGGGATATATAGTTTCT.................................................. 26 1 4 0.25 1 0 1 0 0 0
................................................................................................................TTCAATACGTGGGATATATGGTTTCC.................................................. 26 2 4 0.25 1 0 1 0 0 0
..........................................TTGGAGAAAGCCATTCAGTATCCAAAG....................................................................................................................... 27 1 4 0.25 1 1 0 0 0 0
.................................................................................................................................................................TCAAAATGCAGTTTAATTAAATAGC.. 25 1 4 0.25 1 0 1 0 0 0
..................................................................................................................TAATACGTGGGGTATATGGTTTCTT................................................. 25 1 4 0.25 1 1 0 0 0 0
.....................TATGCTCAGAGCAAGGGTGGGTTGGA............................................................................................................................................. 26 2 5 0.20 1 1 0 0 0 0
...........................................TTCAGAAAGCCATTCAGTATCC........................................................................................................................... 22 3 5 0.20 1 0 1 0 0 0
.................................................................................................................TTAATACGGGGGATATATGGTTT.................................................... 23 1 5 0.20 1 1 0 0 0 0
...........................................................................................GCAGTACGGAACAATGGCAC............................................................................. 20 3 8 0.13 1 0 1 0 0 0
..................................................................................................................TGATACGTGGGATATATGGTTTCT.................................................. 24 1 12 0.08 1 0 1 0 0 0
..................................................................................................................TGATACGTGGGATATATGGTTTCTT................................................. 25 1 12 0.08 1 0 1 0 0 0
..................................................................................................................TGATACGTGGGATATATGGT...................................................... 20 1 13 0.08 1 0 1 0 0 0
........................GTTCATAGCCATGGTGGTT................................................................................................................................................. 19 3 14 0.07 1 1 0 0 0 0

Anti-sense strand reads

TGACTAATTCTTGTTTAAAGGATACAAGTATCGTTCCCACCCAACCTCTTTTGGTAAGTCATAGGTTTCAACTAAAAAGACATCGTACGTACGTCATGTCTTGTTACAGAGGAAATTATGCACCCTATATACCAAAGAATAGCTTTTAAAAGAATTTACAAAGTTTTACGTCAAATTAATTTATCACT
*************************************************************...........((((...((((..((((..(((..((((((((((....)))..)))))))....)))..)))).))))))))...***************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
..................................................................................................TCTTGTTACAGAGGAAATTATGCA.................................................................. 24 0 1 6.00 6 6 0 0 0
...................................................................................................CTTGTTACAGAGGAAATTATGCACC................................................................ 25 0 1 3.00 3 2 0 0 1
.....................................................................................................TGTTACAGAGGAAATTATGCACC................................................................ 23 0 1 2.00 2 2 0 0 0
...................................................................................................CTTGTTACAGAGGAAATTATGCAGC................................................................ 25 1 1 1.00 1 0 1 0 0
....................................CCACCCAACCTCTTTTGGTAAGTCATAGG........................................................................................................................... 29 0 2 1.00 2 2 0 0 0
.................................................................................................TAGTTGTTACAGAGGAAATTATGCACC................................................................ 27 3 1 1.00 1 1 0 0 0
...................................................................................................CTTGTTACAGAGGAAATTATGCA.................................................................. 23 0 1 1.00 1 1 0 0 0
.....................................................................................................TGTTACAGAGGAAATTATGCA.................................................................. 21 0 1 1.00 1 1 0 0 0
.........................................................................................................ACAGAGGAAATTATGCACCCTATATA......................................................... 26 0 1 1.00 1 1 0 0 0
..ACTAATTCTTGTTTAAAGGATACAA................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0
................................................................................................TGTCTTGTTACAGAGGAAATTATGC................................................................... 25 0 1 1.00 1 1 0 0 0
TGACTAATTCTTGTTTAAAGGATACAA................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0
.................................................................................................GTCTTGTTACAGAGGAAATTATGCA.................................................................. 25 0 1 1.00 1 1 0 0 0
................................................................................................................................ATACCAAAGAATAGCTTTTAAAAGAAT................................. 27 0 1 1.00 1 0 0 1 0
................................................................................................TGTCTTGTTACAGAGGAAATTATGCA.................................................................. 26 0 1 1.00 1 0 0 1 0
....................................................................................................TTGTTACAGAGGAAATTATGCACC................................................................ 24 0 1 1.00 1 0 1 0 0
......................................ACCCAACCTCTTTTGGTAAGTCATAGGT.......................................................................................................................... 28 0 4 0.50 2 2 0 0 0
..............................................................................CACATCGTACGTACGTCATGTCTTGTT................................................................................... 27 1 2 0.50 1 1 0 0 0
......................................ACCCAACCTCTTTCGGTAAGTCATAGGT.......................................................................................................................... 28 1 4 0.50 2 2 0 0 0
.......................................CCCAACCTCTTTTGGTAAGTCATAGGT.......................................................................................................................... 27 0 4 0.50 2 2 0 0 0
....................................CCACCCAACCTCTTTGGGTAAGTCATA............................................................................................................................. 27 1 2 0.50 1 1 0 0 0
...........................................................................................................................................................TTACAAAGTTTTACGTCAAATTAATTT...... 27 0 4 0.50 2 2 0 0 0
................................................................................CATCGTACGTACGTCATGTCT....................................................................................... 21 0 2 0.50 1 1 0 0 0
...........................................................CATAGGTTTCAACTAAAAAGACATCGT...................................................................................................... 27 0 2 0.50 1 1 0 0 0
...................................................................TCAACTAAAAAGACATCGTACGTACGTCA............................................................................................ 29 0 2 0.50 1 1 0 0 0
..................................................CCGGTAAGTCATAGGTTTCAACGA.................................................................................................................. 24 3 2 0.50 1 0 1 0 0
.....................................................................................................................................................AAGAATTTACAAAGTTTTACGTCAAATT........... 28 0 3 0.33 1 1 0 0 0
..........................................AACCTCTTTCGGTAAGTCATAGG........................................................................................................................... 23 1 4 0.25 1 1 0 0 0
....................................................................................................................................................................TTTACGTCAAATTAATTTATCACT 24 0 4 0.25 1 1 0 0 0
.......................................CCCAACCTCTTTTGGTAAGTCATAGG........................................................................................................................... 26 0 4 0.25 1 1 0 0 0
.....................................CACCCAACCTCTTTCGGTAAGTCA............................................................................................................................... 24 1 4 0.25 1 1 0 0 0
.........................................................................................................................................................ATTTACAAAGTTTTACGTCAAATT........... 24 0 4 0.25 1 1 0 0 0
........................................CCAACCTCTTTTGGTAAGTCATAGGT.......................................................................................................................... 26 0 4 0.25 1 1 0 0 0
.....................................CACCCAACCTCTTTTGGTAAGTCATAGGT.......................................................................................................................... 29 0 4 0.25 1 0 1 0 0
........................................................................................................................................................AATTTACAAAGTTTTACGTCAAATT........... 25 0 4 0.25 1 1 0 0 0
......................................TCCCAACCTCTTTTGGTAAGTCATAGGT.......................................................................................................................... 28 1 4 0.25 1 0 1 0 0
........................................CCAACCTCTTTTGGTAAGTCATAGG........................................................................................................................... 25 0 4 0.25 1 1 0 0 0
................................................................................................................................................................AAGTTTTACGTCAAATTAATTT...... 22 0 4 0.25 1 1 0 0 0
.....................................CACCCAACCTCTTTTGGTAAGTCATAG............................................................................................................................ 27 0 4 0.25 1 1 0 0 0
.........................................CAACCTCTTTTGGTAAGTCATTGTT.......................................................................................................................... 25 2 4 0.25 1 0 1 0 0
.........................................CAACCTCTTTTGGTAAGTCGTAGGT.......................................................................................................................... 25 1 4 0.25 1 1 0 0 0
............................................................................................................................................................TACAAAGTTTTACGTCAAATT........... 21 0 4 0.25 1 1 0 0 0
...................................................................................................................................................................TTTTACGTCAAATTAATTTATCACT 25 0 4 0.25 1 1 0 0 0
.........................................CAACCTCTTTCGGTAAGTCATAGGTC......................................................................................................................... 26 2 4 0.25 1 0 1 0 0
.....................................TACCCAACCTCTTTTGGTAAGTCATAGG........................................................................................................................... 28 1 4 0.25 1 1 0 0 0
.........................................CAACCTCTTTTGGTAAGTCATAGGT.......................................................................................................................... 25 0 4 0.25 1 1 0 0 0
.......................................CCCAACCTCTTTCGGTAAGTCATAGG........................................................................................................................... 26 1 4 0.25 1 1 0 0 0
.............................................CTCTTTCGGTAAGTCATAGGTT......................................................................................................................... 22 1 4 0.25 1 1 0 0 0
...........................................................................................................................................................TTACAAAGTTTTACGTCAAAGT........... 22 1 5 0.20 1 0 1 0 0
.........................GAGTCTCGTTCCCACCCAACCTCTT.......................................................................................................................................... 25 2 5 0.20 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6473:13797338-13797525 + dmo_233 ACTGATTAAGAACAAATTTCCTATGTTCATAGCAAGGGTGGGTTGGAGAAAACCATTCAG-TATCCAAAGTTGATTTTTCTGT-AGCATGCATGCAGTACAGAACAATGTC-TCCTTTAATACGTGGGATATATGGTTTCTTATCGAAAATTTTCTTAAATGT---------TTCAAAATGCAGTTTAATTAAATAGTGA
droVir3 scaffold_12970:522241-522428 - AGTAATTTAAAATATATTTTCTGTGGTGACTGCAGCTGTGAGATTCGGAAAACCAATTTG-CAAATTTCTCAAAGGCCTCAGT-CCGCGAAATGCACTCATAAAGCATCAG-TTCTCTTATTTGCTTAACATGTGGACTCTTTTGAAAAATCGTCTGGAAAAT---------ACTATAATAAAGTTTAATAAGACAAAAA
droWil2 scf2_1100000004887:97709-97896 - AATAATTTAGAATAAATTTTCGATGCTCGCTGCATTCATGGGATTCACTGTACCAATCTC-GGTAATTCGGGTCCTTCTCAAT-ATTCGAAAGGCATTCACTAATAATTTT-TTCTTTTATTTTGCGCGCATGTGAGAAATTTTTAAAGAATTGATGGAAAAT---------CTTATAATGCTGCTTCATCAGGTTAAAT
dp5 Unknown_group_346:879-1061 - ACTGATTGAGCAGATGATTTCGGTGTACAAAGCACGGATCGGAAAATTTAAACCAGTCTG-CATATATATCTATTTTTGACCTTCAAATTAAAACATTTTTGGACTCTGCT-TCTTTTTAATTTGT------GAGACTTTGTTTCCAAATGCCGATTAAATAT---------ATCAAAATAAATTTTAACTAATGTACAA
droPer2 scaffold_55:77572-77754 - ACTGATTGAGCAGATGATTTCGGTGTACAAAGCACGGATCGGAAAATTTAAACCAGTCTG-CATATATATCTATTTTTGACCTTCAAATTAAAACATTTTTGGACTCTGAT-TCTTTTTAATTTGT------GAGACTTTGTCTCCAAATGCCGATTAAATAT---------ATCAAAATAAATTTTAACTAATGTACAA
droAna3 scaffold_12903:131900-132087 - ATCCATTTAGCATTTTCATCCTGTGTTCATAACAGGGATGGGTAACCGAAAACCAATCTG-AATATATGCTGGATTTTTCAGT-TGAGGATATACATGATTGAATAATTGT-TTTCTTTATTCTGTTTATATATGGCTTTTTGTCAAAAATTTTTTTGAAAAC---------ATTAAAATGTATTTCAATCAAAGAAAAA
droBip1 scf7180000394998:3769-3956 + ATCCGTCAAGCATTTTCATCCTGTGTTCATAACAGGGATGGGTAACCGAAAACCAATTAG-AATATATGCTTGATTTTGCTGT-GAAGGATATGCAAGATTGAATAATTGT-TTTCTTTATTCTGTTCATCTGTGGCTTTTTTTCAAATATTTTCTTAAAAAC---------AGAATAATGTATTTCAATCAAAGAAAAA
droKik1 scf7180000299600:22272-22458 - ATCCATCTAGCATTTTTATCATGTGTTCATAAAAGGAATGGGTAACCGAAAACCAATTCG-AATAAATGCTGGA------------CGAATATACAGGACTGTTTAACTTTTTCCCCTTATTCTTTTCATGTAAGGACTTTTGTCAAATATTTTTTTATAAATATTTTTTATATTGTAGTGCATTTGAATTAACGAGAAA
droEle1 scf7180000491104:660329-660423 + ACCCATCTATCATTTTCATTCTATGTTCATAACAGGAATGGGTAACCGAAATCCAATTTG-AATAAAGGCTGGACTTTTCAGT-GGCGAGCATACAG-------------------------------------------------------------------------------------------------------
droRho1 scf7180000763630:351-539 - ATCCATCTAGCATTTTCATCCTGTGTTCATAACAGGAATGGGTAACCGAAAACCAATTTTTAATAAATGCTGGACTTTTCAGT-GGCGAGTATACAGGAATGTATAATTTT-TTGTTTTATTCTTTTTATATAAGGATTTTTATCAAATATTTTTTTAAAAAT---------ATTGTAGTGAATTTCAATTAAAGAGAAG
droSec2 scaffold_144:37304-37321 + AACAATTTAAAATCTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ACTGATTAAGAACAAATTTCCTATGTTCATAGCAAGGGTGGGTTGGAGAAAACCATTCAG-TATCCAAAGTTGATTTTTCTGT-AGCATGCATGCAGTACAGAACAATGTC-TCCTTTAATACGTGGGATATATGGTTTCTTATCGAAAATTTTCTTAAATGT---------TTCAAAATGCAGTTTAATTAAATAGTGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................TGCATGCAGTACAGAACAATGTC-TCC.....................................................................................26130.003018000120
...................................................................................................................TTTAATACGTGGGATATATGGTTTC............................................................25429.50118502011451
...................................................................................................................TTTAATACGTGGGATATATGGTTTCT...........................................................26417.2569391001613
.....................................................................................................................TAATACGTGGGATATATGGTTTCTTA.........................................................26317.005131200315
.....................................................................................................................TAATACGTGGGATATATGGTTTCTT..........................................................25415.256143000144
........................................................................................TGCATGCAGTACAGAACAATGTC-TCCTT...................................................................................28115.00151500000
...................................................................................................................TTTAATACGTGGGATATATGGTTT.............................................................24414.5058220001917
...................................................................................................................TTTAATACGTGGGATATATGGTTTCTTA.........................................................28310.333115000115
.................TTCCTATGTTCATAGCAAGGGTGGGT.............................................................................................................................................................26210.00201000037
........................................................................................TGCATGCAGTACAGAACAATGTC-TCCT....................................................................................2719.009500040
...................................................................................................................TTTAATACGTGGGATATATGGTTTCTT..........................................................2748.75352000096
.............................................................................................................................................................................TCAAAATGCAGTTTAATTAAATAGT..2546.75271610046
................TTTCCTATGTTCATAGCAAGGGTGGGT.............................................................................................................................................................2726.0012600006
................TTTCCTATGTTCATAGCAAGGGTGGG..............................................................................................................................................................2625.5011800003
...................................................................................................................TTTAATACGTGGGATATATGGTT..............................................................2345.00201200044
........................................................TCAG-TATCCAAAGTTGATTTTTCTGT-....................................................................................................................2624.008710000
........................................................................................TGCATGCAGTACAGAACAATGTC-TC......................................................................................2514.004200011
................TTTCCTATGTTCATAGCAAGGGTGG...............................................................................................................................................................2523.507600010
.............................................................................................................................................................................TCAAAATGCAGTTTAATTAAATAGTGA2743.0012910011
.....................................................................................................................TAATACGTGGGATATATGGTTTCT...........................................................2443.0012800040
.................................................................................................TACAGAACAATGTC-TCCTTTAATACG............................................................................2613.003200001
.............................................................................................................................................................................TCAAAATGCAGTTTAATTAAATAGTG.2642.75111010000
.................TTCCTATGTTCATAGCAAGGGTGGGTT............................................................................................................................................................2722.505500000
.............................................................................................................................................................................TCAAAATGCAGTTTAATTAAATAG...2442.50101000000
...................................................................................................................TTTAATACGTGGGATATATGGT...............................................................2242.259030015
.....................................................................................................................TAATACGTGGGATATATGGTTTCTTATC.......................................................2832.006500001
........................................................................................TGCATGCAGTACAGAACAATGTC-T.......................................................................................2422.004200020
.......................................................TTCAG-TATCCAAAGTTGATTTTTCTG......................................................................................................................2622.004300001
........................................................TCAG-TATCCAAAGTTGATTTTTCTG......................................................................................................................2522.004400000
............................................................................................TGCAGTACAGAACAATGTC-TCC.....................................................................................2212.002200000
..................................................................................T-AGCATGCATGCAGTACAGAACAATGTC-........................................................................................2821.503200010
.................................................................CAAAGTTGATTTTTCTGT-AGCA................................................................................................................2221.503300000
.................................................................CAAAGTTGATTTTTCTGT-AGCATGC.............................................................................................................2521.503100020
.................TTCCTATGTTCATAGCAAGGGTGGG..............................................................................................................................................................2521.503200010
................TTTCCTATGTTCATAGCAAGGGTGGGTT............................................................................................................................................................2821.503100011
...................................................................................................................TTTAATACGTGGGATATATGGTTTCTC..........................................................2741.506100005
....................................................................................................................TTAATACGTGGGATATATGGTTTCTTA.........................................................2731.334200002
......................................................................................................................AATACGTGGGATATATGGTTTCTTA.........................................................2531.334400000
...................................................................................................................TTTAATACGTGGGATATATGG................................................................2141.255100004
....................................................................................................................TTAATACGTGGGATATATGGTTTCT...........................................................2541.255400010
......................................................................................................................AATACGTGGGATATATGGTTTCTT..........................................................2441.255500000
.........................................................................................GCATGCAGTACAGAACAATGTC-TCC.....................................................................................2511.001100000
.........................................................................................GCATGCAGTACAGAACAATGTC-TCCT....................................................................................2611.001100000
...................................................................................................................TTTAATACGTGGGATATATGGTTTCC...........................................................2641.004000022
.........................................................................................GCATGCAGTACAGAACAATGTC-TCCTT...................................................................................2711.001100000
........................................................................................TGCATGCAGTACAGAACAATGTC-TCA.....................................................................................2611.001100000
.......................................................................................................................................................TTTCTTAAATGT---------TTCAAAATGCAGTTTAA...........2911.001100000
.................................................................................................TACAGAACAATGTC-TCCTTTAATAC.............................................................................2511.001100000
............................................................................................TGCAGTACAGAACAATGTC-TCCTT...................................................................................2411.001000010
............................................................................................TGCAGTACAGAACAATGTC-TCCTTC..................................................................................2511.001100000
.............................................GAGAAAACCATTCAG-TATCCAAAGTTG...............................................................................................................................2721.002200000
.......................................................................................ATGCATGCAGTACAGAACAATGTC-TC......................................................................................2611.001100000
.CTGATTAAGAACAAATTTCCTATGT..............................................................................................................................................................................2511.001100000
............................................................................................TGCAGTACAGAACAATGTC-TCCTTTA.................................................................................2611.001100000
.......................................................TTCAG-TATCCAAAGTTGATTTTTCTGT-C...................................................................................................................2821.002100001
.................................................................CAAAGTTGATTTTTCTGT-AGCATGCA............................................................................................................2621.002200000
........................................................................................TGCATGCAGTACAGAACAATGTC-C.......................................................................................2421.002000020
.......................................................................................................................................................TTTCTTAAATGT---------TTCAAAATGCAGT...............2511.001000010
.............................................................TATCCAAAGTTGATTTTTCTGT-AGC.................................................................................................................2521.002110000
..................................................................AAAGTTGATTTTTCTGT-AGCATGC.............................................................................................................2421.002100010
.......................................................................................................ACAATGTC-TCCTTTAATACGT...........................................................................2111.001100000
.......................................................................................................................................................TTTCTTAAATGT---------TTCAAAATGCAGTT..............2611.001100000
.....................................................................................................................TAATACGTGGGATATATGGTTT.............................................................2241.004300001
....................................................................................................................TTAATACGTGGGATATATGGTTTC............................................................2440.753200010
...................................................................................................................TTTAATACGTGGGATATATGGTTC.............................................................2440.753100011
....................................................................................................................TTAATACGTGGGATATATGGTTTCTT..........................................................2640.753200001
...........................................................................................................................................................TTAAATGT---------TTCAAAATGCAGTTTA............2440.753300000
........................................................................................................................TACGTGGGATATATGGTTTCTTATC.......................................................2530.672010001
.......................................................................................................................ATACGTGGGATATATGGTTTCTTA.........................................................2430.672200000
........................................................................................................................................................TTCTTAAATGT---------TTCAAAATGCAGTT..............2530.672200000
..................TCCTATGTTCATAGCAAGGGTGG...............................................................................................................................................................2320.501100000
........................................................TCAG-TATCCAAAGTTGATTTTTCT.......................................................................................................................2420.501000010
..........................................................AG-TATCCAAAGTTGATTTTTCTGT-AGCA................................................................................................................2820.501100000
.................TTCCTATGTTCATAGCAAGGG..................................................................................................................................................................2120.501000010
.....................................................................................................................TAATACGTGGGATATATGGTTTCTTC.........................................................2640.502200000
.............................TAGCAAGGGTGGGTTGGAGAAAAC...................................................................................................................................................2420.501000001
.........................................................CAG-TATCCAAAGTTGATTTTTCTG......................................................................................................................2420.501100000
.................TTCCTATGTTCATAGCAAGGGTGGGC.............................................................................................................................................................2620.501000010
.....................................................................................................................TAATACGTGGGATATATGGTTTCTC..........................................................2540.502000020
.................................................................CAAAGTTGATTTTTCTGT-AGCATG..............................................................................................................2420.501100000
...............................GCAAGGGTGGGTTGGAGAAAACCA.................................................................................................................................................2420.501100000
..................................................AACCATTCAG-TATCCAAAGTTGAT.............................................................................................................................2420.501100000
..................................................................AAAGTTGATTTTTCTGT-AGCATG..............................................................................................................2320.501100000
................................................................................TGT-AGCATGCATGCAGTACAGAACA..............................................................................................2520.501100000
........................................................................................TGCATGCAGTACAGAACAATGC..........................................................................................2220.501000010
...............................................................TCCAAAGTTGATTTTTCTGT-AGCATGC.............................................................................................................2720.501000001
................TTTCCTATGTTCATAGCAAGGGTGGGTC............................................................................................................................................................2820.501100000
..................................................................................T-AGCATGCATGCAGTACAGAACAATG...........................................................................................2620.501100000
................................................................................................................................................................TGT---------TTCAAAATGCAGTTTAATTAAATAG...2840.502200000
............................................................................................................................................................................TTCAAAATGCAGTTTAATTAAATAGT..2640.502100001
........................................................TCAG-TATCCAAAGTTGATTTTTCTGT-C...................................................................................................................2720.501100000
...................CCTATGTTCATAGCAAGGGTGGGTT............................................................................................................................................................2520.501100000
.................................................................................GT-AGCATGCATGCAGTAC....................................................................................................1820.501100000
................TTTCCTATGTTCATAGCAAG....................................................................................................................................................................2020.501100000
......................................................................................CATGCATGCAGTACAGAACAATGTC-........................................................................................2520.501000010
..........................................................AG-TATCCAAAGTTGATTTTTC........................................................................................................................2120.501100000
..................................................................AAAGTTGATTTTTCTGT-AGCAT...............................................................................................................2220.501100000
...................................................ACCATTCAG-TATCCAAAGTTGATT............................................................................................................................2420.501100000
..................TCCTATGTTCATAGCAAGGGTGGGTT............................................................................................................................................................2620.501100000
...................................................................................................................TTTAATACGTGGGATATA...................................................................1840.502100010
................TTTCCTATGTTCATAGCAAGGGTG................................................................................................................................................................2420.501000010
.........................TTCATAGCAAGGGTGGGTTGG..........................................................................................................................................................2120.501000010
.....................................................................................................................TAATACGTGGGATATATGGTT..............................................................2140.502200000
.................TTCCTATGTTCATAGCAAGGGTGG...............................................................................................................................................................2420.501100000
......................................................................................CATGCATGCAGTACAGAACAATG...........................................................................................2320.501100000
.....................TATGTTCATAGCAAGGGTGGGTTG...........................................................................................................................................................2420.501100000
.CTGATTAAGAACAAATTTCCTATG...............................................................................................................................................................................2420.501100000
................TTTCCTATGTTCATAGCAAGGGTGGGC.............................................................................................................................................................2720.501000001
.......................................................................TGATTTTTCTGT-AGCATGCATGCAG.......................................................................................................2520.501100000
.......................................................TTCAG-TATCCAAAGTTGATTTTTCT.......................................................................................................................2520.501100000
...................................................................AAGTTGATTTTTCTGT-AGCATGCATGC.........................................................................................................2720.501100000
.....................................................................................................................TAATACGTGGGATATATGGTTTC............................................................2340.502200000
........................................................................................TGCATGCAGTACAGAACAATG...........................................................................................2120.501100000
........................................................TCAG-TATCCAAAGTTGATTTT..........................................................................................................................2120.501000010
...................................................ACCATTCAG-TATCCAAAGTTGATTT...........................................................................................................................2520.501100000
..................TCCTATGTTCATAGCAAGGGTGGGT.............................................................................................................................................................2520.501100000
..................................................................AAAGTTGATTTTTCTGT-AGCATGCA............................................................................................................2520.501100000
.................................................................CAAAGTTGATTTTTCTGT-AGCATGCATGC.........................................................................................................2920.501000010
.....................................................................................................................TAATACGTGGGATATATGGTTTCC...........................................................2440.502000020
....................................................................................................................TTAATACGTGGGATATATGGTTT.............................................................2340.502200000
................TTTCCTATGTTCATAGCAAGGG..................................................................................................................................................................2220.501100000
........................................................................................TGCATGCAGTACAGAACAATGT..........................................................................................2220.501010000
.................TTCCTATGTTCATAGCAAGGGTG................................................................................................................................................................2320.501100000
..................TCCTATGTTCATAGCAAGGGTGGGTTT...........................................................................................................................................................2720.501100000
........................................................TCAG-TATCCAAAGTTGATTTTTCTGT-A...................................................................................................................2720.501000010
........................................................................................TGCATGCAGTACAGAACAATGTC-TATA....................................................................................2720.501100000
.........................TTCATAGCAAGGGTGGGTTGGAG........................................................................................................................................................2320.501100000
.........................................................................................................................................................TCTTAAATGT---------TTCAAAATGCAGTTT.............2530.331100000
.........................................................................................................................................................TCTTAAATGT---------TTCAAAATGCAGTTTA............2630.331100000
........................................................................................................................................................TTCTTAAATGT---------TTCAAAATGCAGTTTA............2730.331100000
........................................................................................................................TACGTGGGATATATGGTTTCTTATCGAA....................................................2830.331100000
...........................................................................................................................GTGGGATATATGGTTTCTTA.........................................................2030.331000001
........................................................................................................................................................TTCTTAAATGT---------TTCAAAATGCAGTTTAA...........2830.331100000
........................................................................................................................................................TTCTTAAATGT---------TTCAAAATGCAGTTT.............2630.331100000
..................................................................................................................................................................T---------TTCAAAATGCAGTTTAATTAAATAG...2640.251100000
.............................................GAGAAAACCATTCAG-TATCCAAAGTT................................................................................................................................2640.251000010
...............................................................................................................................................................................AAAATGCAGTTTAATTAAATAGTG.2440.251100000
..................................................AACCATTCAG-TATCCAAAGTT................................................................................................................................2140.251100000
......................................................................................................................AATACGTGGGATATATGGTTTC............................................................2240.251100000
...................................................................................................................TTTAATACGTGGGATATATGGTTTCTA..........................................................2740.251000010
...........................................TGGAGAAAACCATTCAG-TATCCAAAGTT................................................................................................................................2840.251000010
....................................................................................................................TTAATACGTGGGATATATGGTT..............................................................2240.251100000
..................................................................................................................CTTTAATACGTGGGATATATGGTTTC............................................................2640.251100000
.......................................................................................................................ATACGTGGGATATATGGTTTCTT..........................................................2340.251000010
.....................................................................................................................TAATACGTGGGATATATGGT...............................................................2040.251000001
....................................................................................................................TTAATACGTGGGATATATGGTTTCTTC.........................................................2740.251100000
..........................................TTGGAGAAAACCATTCAG-TATCC......................................................................................................................................2340.251100000
........................................................................................................................TACGTGGGATATATGGTTTCTT..........................................................2240.251100000
......................................................................................................................AATACGTGGGATATATGGTT..............................................................2040.251100000
.............................................................................................................................................................................TCAAAATGCAGTTTAATTAAATA....2340.251100000
............................................................................................................................................................TAAATGT---------TTCAAAATGCAGTTTAAT..........2540.251100000
..........................................................................................................................CGTGGGATATATGGTTTC............................................................1840.251100000
...................................................................................................................................................................................TGCAGTTTAATTAAATAGTGA2140.251010000
.........................................................................................................................ACGTGGGATATATGGTTTC............................................................1940.251100000
.............................................................................................................................................................................TCAAAATGCAGTTTAATTAAATAGC..2540.251000010
droVir3
AGTAATTTAAAATATATTTTCTGTGGTGACTGCAGCTGTGAGATTCGGAAAACCAATTTG-CAAATTTCTCAAAGGCCTCAGT-CCGCGAAATGCACTCATAAAGCATCAG-TTCTCTTATTTGCTTAACATGTGGACTCTTTTGAAAAATCGTCTGGAAAAT---------ACTATAATAAAGTTTAATAAGACAAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................CAG-TTCTCTTATTTGCTTAACATGT..................................................................2514.004003000000000000000000000000100000000000000000000000000000000000
................TTTTCTGTGGTGACTGCAGCT...................................................................................................................................................................2153.00151202000000000000000000000000000000000000001000000000000000000000
............................................................................................TGCACTCATAAAGCATCAG-TTCTC...................................................................................2412.002002000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TTATTTGCTTAACATGTGGACTCTT..........................................................2512.002002000000000000000000000000000000000000000000000000000000000000
................TTTTCTGTGGTGACTGCAGCTGTGAGA.............................................................................................................................................................2731.675005000000000000000000000000000000000000000000000000000000000000
...........................................TTCGGAAAACCAATTTG-CAAATTTC...................................................................................................................................2521.503102000000000000000000000000000000000000000000000000000000000000
.......................................GAGATTCGGAAAACCAATTTG-CAAAT......................................................................................................................................2621.002001000000000000000000000000100000000000000000000000000000000000
.............................................................................CTCAGT-CCGCGAAATGCACTCATAAAGC..............................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ATGTGGACTCTTTTGAAAAATCGTC.............................................2511.001000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................TCTCTTATTTGCTTAACATG...................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................CAG-TTCTCTTATTTGCTTAACATGTGG................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................CAG-TTCTCTTATTTGCTTAACATG...................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TAACATGTGGACTCTTTTGAAAAATCG...............................................2711.001000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................TCAG-TTCTCTTATTTGCTTAACATG...................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
................TTTTCTGTGGTGACTGCAGCTGTGA...............................................................................................................................................................2550.603002000000000000000000000000000000000001000000000000000000000000
................TTTTCTGTGGTGACTGCAGC....................................................................................................................................................................2050.603003000000000000000000000000000000000000000000000000000000000000
................TTTTCTGTGGTGACTGCAGCTG..................................................................................................................................................................2250.603003000000000000000000000000000000000000000000000000000000000000
..............................................................AAATTTCTCAAAGGCCTCAGT-CCGC................................................................................................................2520.501001000000000000000000000000000000000000000000000000000000000000
............................................TCGGAAAACCAATTTG-CAAATTTCT..................................................................................................................................2520.501001000000000000000000000000000000000000000000000000000000000000
.....................................................................TCAAAGGCCTCAGT-CCGCGAAATGC.........................................................................................................2520.501000000000000000000000000001000000000000000000000000000000000000
.............................................CGGAAAACCAATTTG-CAAATTTCTCA................................................................................................................................2620.501001000000000000000000000000000000000000000000000000000000000000
.............................................CGGAAAACCAATTTG-CAAATTTCT..................................................................................................................................2420.501001000000000000000000000000000000000000000000000000000000000000
..................................................AACCAATTTG-CAAATTTCTCAAAGGCC..........................................................................................................................2720.501001000000000000000000000000000000000000000000000000000000000000
............................................TCGGAAAACCAATTTG-CAAATTTC...................................................................................................................................2420.501001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................CTTTTGAAAAATCGTCTGGAAAAT---------AC..........................2620.501000000000000000000000000000000000000000100000000000000000000000
...............................GCAGCTGTGAGATTCGGAAAACCA.................................................................................................................................................2420.501000000000010000000000000000000000000000000000000000000000000000
...................................................................TCTCAAAGGCCTCAGT-CCGCGAAATG..........................................................................................................2620.501001000000000000000000000000000000000000000000000000000000000000
.........................................................TTG-CAAATTTCTCAAAGGCCTCAGT-C...................................................................................................................2620.501001000000000000000000000000000000000000000000000000000000000000
................TTTTCTGTGGTGACTGCAGCTGTG................................................................................................................................................................2450.402002000000000000000000000000000000000000000000000000000000000000
................TTTTCTGTGGTGACTGCAGCTGTGAG..............................................................................................................................................................2630.331001000000000000000000000000000000000000000000000000000000000000
....................CTGTGGTGACTGCAGCTGTGAGAT............................................................................................................................................................2430.331001000000000000000000000000000000000000000000000000000000000000
................TTTTCTGTGGTGACTGCAGCTGTGAA..............................................................................................................................................................2650.201001000000000000000000000000000000000000000000000000000000000000
................TTTTCTGTGGTGACTGCAGCTGTCC...............................................................................................................................................................2550.201001000000000000000000000000000000000000000000000000000000000000
..............TATTTTCTGTGGTGACTGCAGCTG..................................................................................................................................................................2450.201001000000000000000000000000000000000000000000000000000000000000
..............TATTTTCTGTGGTGACTGCAGC....................................................................................................................................................................2250.201001000000000000000000000000000000000000000000000000000000000000
..............TATTTTCTGTGGTGACTGCAGCT...................................................................................................................................................................2350.201001000000000000000000000000000000000000000000000000000000000000
................TTTTCTGTGGTGACTGCAGCTGT.................................................................................................................................................................2350.201000000000000000000000000000000000000001000000000000000000000000
.................TTTCTGTGGTGACTGCAG.....................................................................................................................................................................1850.201001000000000000000000000000000000000000000000000000000000000000
droWil2
AATAATTTAGAATAAATTTTCGATGCTCGCTGCATTCATGGGATTCACTGTACCAATCTC-GGTAATTCGGGTCCTTCTCAAT-ATTCGAAAGGCATTCACTAATAATTTT-TTCTTTTATTTTGCGCGCATGTGAGAAATTTTTAAAGAATTGATGGAAAAT---------CTTATAATGCTGCTTCATCAGGTTAAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................TGAGAAATTTTTAAAGAATTGATGGAA........................................2716.00600042
...................................................................................................................................TGTGAGAAATTTTTAAAGAATTGATGG..........................................2715.00500050
.................TTTCGATGCTCGCTGCATTCATGGGA.............................................................................................................................................................2642.751103080
............................................TCACTGTACCAATCTC-GGTAATTCGGG................................................................................................................................2792.5623021020
............................................TCACTGTACCAATCTC-GGTAATTCG..................................................................................................................................2592.4422022000
............................................TCACTGTACCAATCTC-GGTAATTCGG.................................................................................................................................2692.2220017030
...........................................................................TTCTCAAT-ATTCGAAAGGCATTCAC...................................................................................................2512.00200020
...................................................................................................................................TGTGAGAAATTTTTAAAGAATTGATG...........................................2612.00200020
.....................................................................................................................................TGAGAAATTTTTAAAGAATTGATGG..........................................2512.00200020
..............................TGCATTCATGGGATTCACTGTACCAA................................................................................................................................................2641.75705020
..............................TGCATTCATGGGATTCACTGTACC..................................................................................................................................................2441.50603030
..............................TGCATTCATGGGATTCACTGTACCA.................................................................................................................................................2541.25502030
..............................TGCATTCATGGGATTCACTGTACCAATC..............................................................................................................................................2841.25504010
.................TTTCGATGCTCGCTGCATTCATGGG..............................................................................................................................................................2541.00404000
................................................................................................................TTCTTTTATTTTGCGCGCATGTGAGA..............................................................2611.00101000
..............................................................................TCAAT-ATTCGAAAGGCATTCACTAATAA.............................................................................................2811.00101000
.................................................................................................................TCTTTTATTTTGCGCGCATGTGAGAAAT...........................................................2811.00101000
.............................................................................CTCAAT-ATTCGAAAGGCATTCACTAA................................................................................................2611.00101000
...........................................................................TTCTCAAT-ATTCGAAAGGCATTCACTAA................................................................................................2811.00101000
..............................................................................................................T-TTCTTTTATTTTGCGCGCATGTGA................................................................2511.00100010
..............................................................................TCAAT-ATTCGAAAGGCATTCACTAA................................................................................................2511.00100010
....................................................................................................................TTTATTTTGCGCGCATGTGAGA..............................................................2211.00101000
..................TTCGATGCTCGCTGCATTCATGGGA.............................................................................................................................................................2541.00400040
....................................................................................ATTCGAAAGGCATTCACTAATA..............................................................................................2211.00101000
.......................TGCTCGCTGCATTCATGGGATTCACTG......................................................................................................................................................2741.00402020
.....................................................................................TTCGAAAGGCATTCACTAATAATTTT-T.......................................................................................2711.00101000
...........................................................................TTCTCAAT-ATTCGAAAGGCATTCACT..................................................................................................2611.00101000
...............................................................................................................................CGCATGTGAGAAATTTTTAAAGAAT................................................2511.00101000
................................................................................................................TTCTTTTATTTTGCGCGCATGTGAG...............................................................2511.00101000
...........................................TTCACTGTACCAATCTC-GGTAATTCGGG................................................................................................................................2891.00909000
............................................................................TCTCAAT-ATTCGAAAGGCATTCACT..................................................................................................2511.00100010
.............................................................................................................TT-TTCTTTTATTTTGCGCGCATGTGAG...............................................................2711.00100010
...................................................................................................................................TGTGAGAAATTTTTAAAGAATTGA.............................................2411.00100010
...........................................TTCACTGTACCAATCTC-GGTAATT....................................................................................................................................2490.89808000
..........................TCGCTGCATTCATGGGATTCACTGTAC...................................................................................................................................................2740.75302010
................................................TGTACCAATCTC-GGTAATTCGGGTCC.............................................................................................................................2690.67605010
.............................................CACTGTACCAATCTC-GGTAATTCGG.................................................................................................................................2590.67606000
........................................................................................................................................................TGATGGAAAAT---------CTTATAATGCTGCTT.............2690.67603030
..................................................................................................................................................................T---------CTTATAATGCTGCTTCATCAGGT.....2480.63503020
...........................................................................................................................................................TGGAAAAT---------CTTATAATGCTGCTTCATCA........2880.63504010
..................................................................................................................................................................T---------CTTATAATGCTGCTTCATCAGGTTAAA.2850.60303000
........................................................................................................................................................TGATGGAAAAT---------CTTATAATGCTGC...............24100.60601050
........................................................................................................................................................TGATGGAAAAT---------CTTATAATGCTGCT..............25100.60600051
..TAATTTAGAATAAATTTTCGATGCTCGC..........................................................................................................................................................................28120.58703040
...........................................TTCACTGTACCAATCTC-GGTAATTCG..................................................................................................................................2690.56505000
...........................................TTCACTGTACCAATCTC-GGTAATTCGG.................................................................................................................................2790.56504010
...........................................................................................................................................................TGGAAAAT---------CTTATAATGCTGCTTCA...........2590.56504010
...............................GCATTCATGGGATTCACTGTACCAA................................................................................................................................................2540.50202000
..................................TTCATGGGATTCACTGTACCAATCTC-GG.........................................................................................................................................2840.50202000
.......................TGCTCGCTGCATTCATGGGATTCACT.......................................................................................................................................................2640.50202000
...................TCGATGCTCGCTGCATTCATGGGA.............................................................................................................................................................2440.50200020
...........................................................................................................................................................TGGAAAAT---------CTTATAATGCTGCTTCAT..........2690.33301020
............................................TCACTGTACCAATCTC-GGTAATTCGGGT...............................................................................................................................2890.33303000
..................................................TACCAATCTC-GGTAATTCGGGTCCT............................................................................................................................2590.33302010
..................................................TACCAATCTC-GGTAATTCGGGTCCTT...........................................................................................................................2670.29202000
..........................................................TC-GGTAATTCGGGTCCTTCTCAAT-A...................................................................................................................2570.29202000
........................................................TCTC-GGTAATTCGGGTCCTTCTCAAT-A...................................................................................................................2770.29202000
...................TCGATGCTCGCTGCATTCATGGGAT............................................................................................................................................................2540.25100100
................................................................................................................................................................AAT---------CTTATAATGCTGCTTCATCAGGT.....2680.25202000
..................TTCGATGCTCGCTGCATTCATGGGT.............................................................................................................................................................2540.25100010
...................................TCATGGGATTCACTGTACCC.................................................................................................................................................2040.25101000
...................................TCATGGGATTCACTGTACCAATCTC-G..........................................................................................................................................2640.25101000
..............................TGCATTCATGGGATTCACTGTACCAATCT.............................................................................................................................................2940.25101000
......................................TGGGATTCACTGTACCAATCTC-GG.........................................................................................................................................2440.25101000
..............................TGCATTCATGGGATTCACTGTAC...................................................................................................................................................2340.25101000
...........................CGCTGCATTCATGGGATTCACTGTAC...................................................................................................................................................2640.25101000
........................GCTCGCTGCATTCATGGGATTCACTG......................................................................................................................................................2640.25101000
......................................TGGGATTCACTGTACCAATCTC-GGTA.......................................................................................................................................2640.25101000
..........................TCGCTGCATTCATGGGATTCACTGTA....................................................................................................................................................2640.25100010
......................................TGGGATTCACTGTACCAATCTC-GGTAA......................................................................................................................................2740.25101000
...............................GCATTCATGGGATTCACTGTACCA.................................................................................................................................................2440.25101000
...................................TCATGGGATTCACTGTACCAATCTC-GGT........................................................................................................................................2840.25101000
..........................TCGCTGCATTCATGGGATTCACTG......................................................................................................................................................2440.25101000
....................CGATGCTCGCTGCATTCATGGGAT............................................................................................................................................................2440.25101000
..................TTCGATGCTCGCTGCATTCATGGGAAAA..........................................................................................................................................................2840.25101000
..............................TGCATTCATGGGATTCACTGT.....................................................................................................................................................2140.25101000
..............................TGCATTCATGGGATTCACTGTACCAAT...............................................................................................................................................2740.25101000
.......................TGCTCGCTGCATTCATGGGAT............................................................................................................................................................2140.25101000
................................CATTCATGGGATTCACTGTACCAATCT.............................................................................................................................................2740.25100010
..................TTCGATGCTCGCTGCATTCATGGGATT...........................................................................................................................................................2740.25100010
..............................................................................................................................................................AAAAT---------CTTATAATGCTGCTTCATCAGG......2780.25201010
.................TTTCGATGCTCGCTGCATTCATGGGAT............................................................................................................................................................2740.25101000
..........................TCGCTGCATTCATGGGATTCACTGT.....................................................................................................................................................2540.25100010
.................................................................................................................................................................AT---------CTTATAATGCTGCTTCATCAGGT.....2580.25201010
............................GCTGCATTCATGGGATTCACTGTACCAA................................................................................................................................................2840.25101000
..........................TCGCTGCATTCATGGGATTCACTGTACC..................................................................................................................................................2840.25101000
.......................TGCTCGCTGCATTCATGGGATTCACTA......................................................................................................................................................2740.25100010
.......................TGCTCGCTGCATTCATGGGATTCAC........................................................................................................................................................2540.25101000
........................................................................................................................................................TGATGGAAAAT---------CTTATAATGCTGCTTCA...........2890.22202000
...........................................TTCACTGTACCAATCTC-GGTAATTCGGGT...............................................................................................................................2990.22202000
................................................TGTACCAATCTC-GGTAATTCGGGTC..............................................................................................................................2590.22202000
.............................................CACTGTACCAATCTC-GGTAATTCGGG................................................................................................................................2690.22202000
................................................TGTACCAATCTC-GGTAATTCGGGTCCT............................................................................................................................2790.22201010
...........................................TTCACTGTACCAATCTC-GGTAATTC...................................................................................................................................2590.22202000
.................TTTCGATGCTCGCTGCATTCATGG...............................................................................................................................................................2450.20101000
.................................................................................................................................................................AT---------CTTATAATGCTGCTTCATCAGGTTAAA.2950.20101000
..................................................................................................................................................................T---------CTTATAATGCTGCTTCATCAGGTTAAAT2950.20101000
..................................................................................................................................................................T---------CTTATAATGCTGCTTCATCAGGTTAA..2750.20101000
..TAATTTAGAATAAATTTTCGATGCTCG...........................................................................................................................................................................27120.17202000
.......TAGAATAAATTTTCGATGCTCGCTG........................................................................................................................................................................25200.15303000
...................................................ACCAATCTC-GGTAATTCGGGTCCTT...........................................................................................................................2570.14101000
...................................................ACCAATCTC-GGTAATTCGGGTCCTTC..........................................................................................................................2670.14101000
........................................................TCTC-GGTAATTCGGGTCCTTCTCAAT-....................................................................................................................2670.14101000
...........................................................C-GGTAATTCGGGTCCTTCTCAAT-ATTC................................................................................................................2770.14101000
..................................................................................................................................................................T---------CTTATAATGCTGCTTCATCAGG......2380.13100010
.................................................................................................................................................................AT---------CTTATAATGCTGCTTCATCAG.......2380.13101000
...........................................................................................................................................................TGGAAAAT---------CTTATAATGCTGCTTCATCAG.......2980.13101000
..................................................................................................................................................................T---------CTTATAATGCTGCTTCATCAGGTT....2580.13101000
................................................................................................................................................................AAT---------CTTATAATGCTGCTTCATCAGG......2580.13101000
................................................................................................................................................................AAT---------CTTATAATGCTGCTTCATCAG.......2480.13100010
..............................................ACTGTACCAATCTC-GGTAATTCGG.................................................................................................................................2490.11101000
.............................................CACTGTACCAATCTC-GGTAATTCGGGT...............................................................................................................................2790.11101000
...........................................................................................................................................................TGGAAAAT---------CTTATAATGCTGCTTCATC.........2790.11101000
....................................................CCAATCTC-GGTAATTCGGGTC..............................................................................................................................2190.11100010
..................................................TACCAATCTC-GGTAATTCGG.................................................................................................................................2090.11100010
..................................................TACCAATCTC-GGTAATTCGGGTCC.............................................................................................................................2490.11101000
............................................................................................................................................................GGAAAAT---------CTTATAATGCTGCTT.............2290.11101000
........................................................................................................................................................TGATGGAAAAT---------CTTATAATGCTGCTTC............2790.11101000
...................................................ACCAATCTC-GGTAATTCGGGTCC.............................................................................................................................2390.11101000
...........................................................................................................................................................TGGAAAAT---------CTTATAATGCTGCTT.............2390.11101000
...............................................CTGTACCAATCTC-GGTAATTCGG.................................................................................................................................2390.11101000
........................................................................................................................................................TGATGGAAAAT---------CTTATAATGCTGCTA.............26100.10101000
........................................................................................................................................................TGATGGAAAAT---------CTTATAATGCTGCA..............25100.10100010
........................................................................................................................................................TGATGGAAAAT---------CTTATAATGCTG................23100.10100010
...........................................................................................................................................................TGGAAAAT---------CTTATAATGCTGC...............21100.10100010
............TAAATTTTCGATGCTCGCTGCATTC...................................................................................................................................................................25200.10202000
............TAAATTTTCGATGCTCGCTGCATTCATG................................................................................................................................................................28200.10202000
............................................................................................................TTT-TTCTTTTATTTTGCGCGCATGTG.................................................................26100.10100010
..............................................................................................................T-TTCTTTTATTTTGCGCGCATGTG.................................................................24110.09101000
..TAATTTAGAATAAATTTTCGATGCTCGCT.........................................................................................................................................................................29120.08101000
..TAATTTAGAATAAATTTTCGATGCT.............................................................................................................................................................................25130.08101000
.....................................................................................................TAATAATTTT-TTCTTTTATTTTGCGCG.......................................................................27140.07100010
........................................................................................................TAATTTT-TTCTTTTATTTTGCGCGCA.....................................................................26140.07100010
.....................................................................................................TAATAATTTT-TTCTTTTATTTTGCGCGC......................................................................28140.07100010
........................................................................................................TAATTTT-TTCTTTTATTTTGCGCGC......................................................................25140.07100010
......................................................................................................AATAATTTT-TTCTTTTATTTTGCGCGCA.....................................................................28140.07101000
...........................................................................................................TTTT-TTCTTTTATTTTGCGCGCATG...................................................................25150.07100010
..........................................................................................................ATTTT-TTCTTTTATTTTGCGCGCA.....................................................................24150.07101000
..................................................................................................................CTTTTATTTTGCGCGCATG...................................................................19180.06101000
...................................................................................................................TTTTATTTTGCGCGCATG...................................................................18190.05101000
.......TAGAATAAATTTTCGATGCTCGC..........................................................................................................................................................................23200.05101000
.............AAATTTTCGATGCTCGCTGCAT.....................................................................................................................................................................22200.05101000
dp5
ACTGATTGAGCAGATGATTTCGGTGTACAAAGCACGGATCGGAAAATTTAAACCAGTCTG-CATATATATCTATTTTTGACCTTCAAATTAAAACATTTTTGGACTCTGCT-TCTTTTTAATTTGT------GAGACTTTGTTTCCAAATGCCGATTAAATAT---------ATCAAAATAAATTTTAACTAATGTACAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................TCGGTGTACAAAGCACGGATCGG..............................................................................................................................................................23224.004804700000100
.................TTTCGGTGTACAAAGCACGGATCGG..............................................................................................................................................................25215.003002800000200
....................CGGTGTACAAAGCACGGATCGG..............................................................................................................................................................2227.001401300000100
..TGATTGAGCAGATGATTTCGGTG...............................................................................................................................................................................2334.331301000101100
.........................................................................................TAAAACATTTTTGGACTCTGCT-TCTTT...................................................................................2714.0040000000400
.................TTTCGGTGTACAAAGCACGGATCG...............................................................................................................................................................2424.0080500000300
......TGAGCAGATGATTTCGGTGTACAAA.........................................................................................................................................................................2532.0060600000000
...................TCGGTGTACAAAGCACGGATCGGT.............................................................................................................................................................2422.0040400000000
..............TGATTTCGGTGTACAAAGCACGGAT.................................................................................................................................................................2522.0040300000010
...................TCGGTGTACAAAGCACGGATCG...............................................................................................................................................................2221.5030300000000
.................TTTCGGTGTACAAAGCACGGATC................................................................................................................................................................2321.5030300000000
..................TTCGGTGTACAAAGCACGGATCGG..............................................................................................................................................................2421.5030300000000
......TGAGCAGATGATTTCGGTGTACAAAGC.......................................................................................................................................................................2731.3340310000000
.CTGATTGAGCAGATGATT.....................................................................................................................................................................................1841.2550500000000
.........................TACAAAGCACGGATCGGAAAATTTAAA....................................................................................................................................................2711.0010000000100
...........................................................................................................................TGT------GAGACTTTGTTTCCAAATGCCGATT...........................................2811.0010100000000
..................TTCGGTGTACAAAGCACGGATCG...............................................................................................................................................................2321.0020200000000
.........................TACAAAGCACGGATCGGAAAATTTAA.....................................................................................................................................................2611.0010000000010
......TGAGCAGATGATTTCGGTGTACAAAG........................................................................................................................................................................2631.0030100000200
.........................TACAAAGCACGGATCGGAAAATT........................................................................................................................................................2311.0010100000000
...................TCGGTGTACAAAGCACGGATC................................................................................................................................................................2121.0020200000000
.........................TACAAAGCACGGATCGA..............................................................................................................................................................1730.6720000000200
.....TTGAGCAGATGATTTCGGTGTACAAA.........................................................................................................................................................................2630.6720000000200
.CTGATTGAGCAGATGATTTCGGTGTAC............................................................................................................................................................................2730.6720000000200
..TGATTGAGCAGATGATTTCGG.................................................................................................................................................................................2130.6720200000000
......TGAGCAGATGATTTCGGTGTACAAAA........................................................................................................................................................................2630.6720200000000
..TGATTGAGCAGATGATTTCGGT................................................................................................................................................................................2230.6720200000000
......TGAGCAGATGATTTCGGTGTACAA..........................................................................................................................................................................2430.6720200000000
.CTGATTGAGCAGATGATTTCGGTG...............................................................................................................................................................................2430.6720000000020
......TGAGCAGATGATTTCGGTGTACAAAGCA......................................................................................................................................................................2830.6720200000000
.......GAGCAGATGATTTCGGTGTACAAAGCA......................................................................................................................................................................2730.6720200000000
.........................TACAAAGCACGGATCGGTT............................................................................................................................................................1920.5010100000000
..............TGATTTCGGTGTACAAAGCAC.....................................................................................................................................................................2120.5010100000000
.................TTTCGGTGTACAAAGCACGG...................................................................................................................................................................2020.5010100000000
..................TTCGGTGTACAAAGCACGGATC................................................................................................................................................................2220.5010100000000
.....................GGTGTACAAAGCACGGATCG...............................................................................................................................................................2020.5010100000000
....................CGGTGTACAAAGCACGGATCG...............................................................................................................................................................2120.5010100000000
........................GTACAAAGCACGGATCGG..............................................................................................................................................................1820.5010100000000
............GATGATTTCGGTGTACAAAGCACGGAT.................................................................................................................................................................2720.5010000000010
.................TTTCGGTGTACAAAGCACGGATT................................................................................................................................................................2320.5010100000000
...........AGATGATTTCGGTGTACAAAGCAC.....................................................................................................................................................................2420.5010100000000
.......................TGTACAAAGCACGGATCGT..............................................................................................................................................................1920.5010100000000
...................TCGGTGTACAAAGCACGGATT................................................................................................................................................................2120.5010100000000
.......................TGTACAAAGCACGGATCGG..............................................................................................................................................................1920.5010100000000
....................CGGTGTACAAAGCACGGATCGGT.............................................................................................................................................................2320.5010100000000
.................TTTCGGTGTACAAAGCACGGATCGGT.............................................................................................................................................................2620.5010100000000
..............TGATTTCGGTGTACAAAGCACGGA..................................................................................................................................................................2420.5010100000000
...........AGATGATTTCGGTGTACAA..........................................................................................................................................................................1930.3310100000000
......TGAGCAGATGATTTCGGTG...............................................................................................................................................................................1930.3310100000000
..TGATTGAGCAGATGATTTCGGA................................................................................................................................................................................2230.3310100000000
.......................TGTACAAAGCACGGATCGA..............................................................................................................................................................1930.3310100000000
...GATTGAGCAGATGATTTCGGTG...............................................................................................................................................................................2230.3310100000000
....................................................................................................................................................ATGCCGATTAAATAT---------ATCAAAATAA..................2530.3310100000000
.....TTGAGCAGATGATTTCGGTGTACAAAGC.......................................................................................................................................................................2830.3310100000000
.CTGATTGAGCAGATGATTTCGG.................................................................................................................................................................................2230.3310000000010
ACTGATTGAGCAGATGATTTCGGTG...............................................................................................................................................................................2530.3310100000000
ACTGATTGAGCAGATGATT.....................................................................................................................................................................................1940.2510100000000
..TGATTGAGCAGATGATTA....................................................................................................................................................................................1850.2010100000000
droPer2
ACTGATTGAGCAGATGATTTCGGTGTACAAAGCACGGATCGGAAAATTTAAACCAGTCTG-CATATATATCTATTTTTGACCTTCAAATTAAAACATTTTTGGACTCTGAT-TCTTTTTAATTTGT------GAGACTTTGTCTCCAAATGCCGATTAAATAT---------ATCAAAATAAATTTTAACTAATGTACAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......TGAGCAGATGATTTCGGTGTACAAAG........................................................................................................................................................................2642.75110101000
...................TCGGTGTACAAAGCACGGATCGG..............................................................................................................................................................2341.757070000
..............TGATTTCGGTGTACAAAGCACGGAT.................................................................................................................................................................2541.255040001
..TGATTGAGCAGATGATTTCGGTG...............................................................................................................................................................................2341.255050000
..............TGATTTCGGTGTACAAAGCACGGA..................................................................................................................................................................2440.502020000
......TGAGCAGATGATTTCGGTGTA.............................................................................................................................................................................2140.502000002
......TGAGCAGATGATTTCGGTGTACAAAGCA......................................................................................................................................................................2840.502010001
...................TCGGTGTACAAAGCACGGATCGGT.............................................................................................................................................................2440.502020000
.CTGATTGAGCAGATGATTTCGGTG...............................................................................................................................................................................2440.502020000
....................CGGTGTACAAAGCACGGATCGG..............................................................................................................................................................2240.502020000
..TGATTGAGCAGATGATTTCGGTGTAC............................................................................................................................................................................2640.502020000
.........................................................................................................................................................GATTAAATAT---------ATCAAAATAAATT...............2330.331010000
ACTGATTGAGCAGATGATTTCGGTG...............................................................................................................................................................................2540.251010000
..TGATTGAGCAGATGATTTCGGT................................................................................................................................................................................2240.251010000
...GATTGAGCAGATGATTTCGGTGT..............................................................................................................................................................................2340.251010000
......TGAGCAGATGATTTCGGT................................................................................................................................................................................1840.251001000
......TGAGCAGATGATTTCGGTGTACAA..........................................................................................................................................................................2440.251010000
..............TGATTTCGGTGTACAAAGCACG....................................................................................................................................................................2240.251010000
..TGATTGAGCAGATGATTTCGGTGTA.............................................................................................................................................................................2540.251000001
.....TTGAGCAGATGATTTCGGTGTACAAAGA.......................................................................................................................................................................2840.251010000
..................................................................................................................................................AAATGCCGATTAAATAT---------ATCAAAA.....................2440.251010000
......TGAGCAGATGATTTCGGTGTACAAAA........................................................................................................................................................................2640.251010000
......TGAGCAGATGATTTCGGTGTACAAA.........................................................................................................................................................................2540.251010000
.........GCAGATGATTTCGGTGTACAAAGCA......................................................................................................................................................................2540.251000001
......TGAGCAGATGATTTCGGTGTACAAAGC.......................................................................................................................................................................2740.251010000
..............TGATTTCGGTGTACAAAGCAA.....................................................................................................................................................................2140.251010000
...........AGATGATTTCGGTGTACAAAGCACGG...................................................................................................................................................................2640.251010000
..........CAGATGATTTCGGTGTACAAAGCACG....................................................................................................................................................................2640.251010000
..............TGATTTCGGTGTACAAAGCACGAT..................................................................................................................................................................2440.251010000
......TGAGCAGATGATTTCGGTGTACAAAGCAC.....................................................................................................................................................................2940.251010000
..TGATTGAGCAGATGATTTCGGTGTACA...........................................................................................................................................................................2740.251000001
.................TTTCGGTGTACAAAGCACGGATCGG..............................................................................................................................................................2540.251010000
.......GAGCAGATGATTTCGGTGTACAAAG........................................................................................................................................................................2540.251010000
..TGATTGAGCAGATGATTTCGGTTA..............................................................................................................................................................................2440.251100000
....................CGGTGTACAAAGCACGGATCG...............................................................................................................................................................2140.251010000
droAna3
ATCCATTTAGCATTTTCATCCTGTGTTCATAACAGGGATGGGTAACCGAAAACCAATCTG-AATATATGCTGGATTTTTCAGT-TGAGGATATACATGATTGAATAATTGT-TTTCTTTATTCTGTTTATATATGGCTTTTTGTCAAAAATTTTTTTGAAAAC---------ATTAAAATGTATTTCAATCAAAGAAAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................TTCATAACAGGGATGGGTAACCGAAAAC...................................................................................................................................................2860.503200010
....................................................................................................................TTTATTCTGTTTATATATGGCTTTTTGT........................................................2830.331010000
..................TCCTGTGTTCATAACAGGGATGGGTA............................................................................................................................................................2660.332200000
.............................TAACAGGGATGGGTAACCGAAAACC..................................................................................................................................................2550.201010000
.............................TAACAGGGATGGGTAACCGAAAACCA.................................................................................................................................................2650.201000001
.........................TTCATAACAGGGATGGGTAACCGA.......................................................................................................................................................2460.171100000
.....................TGTGTTCATAACAGGGATGGG..............................................................................................................................................................2160.171100000
.............................TAACAGGGATGGGTAACCGAAAAC...................................................................................................................................................2460.171001000
.........................TTCATAACAGGGATGGGTAACCGAA......................................................................................................................................................2560.171100000
.....................TGTGTTCATAACAGGGATGGGTAA...........................................................................................................................................................2460.171100000
.....................TGTGTTCATAACAGGGATGG...............................................................................................................................................................2060.171100000
.TCCATTTAGCATTTTCATCCTGTGTT.............................................................................................................................................................................2660.171010000
droBip1
ATCCGTCAAGCATTTTCATCCTGTGTTCATAACAGGGATGGGTAACCGAAAACCAATTAG-AATATATGCTTGATTTTGCTGT-GAAGGATATGCAAGATTGAATAATTGT-TTTCTTTATTCTGTTCATCTGTGGCTTTTTTTCAAATATTTTCTTAAAAAC---------AGAATAATGTATTTCAATCAAAGAAAAASizeHit CountTotal NormTotal
No Reads
droKik1
ATCCATCTAGCATTTTTATCATGTGTTCATAAAAGGAATGGGTAACCGAAAACCAATTCG-AATAAATGCTGGA------------CGAATATACAGGACTGTTTAACTTTTTCCCCTTATTCTTTTCATGTAAGGACTTTTGTCAAATATTTTTTTATAAATATTTTTTATATTGTAGTGCATTTGAATTAACGAGAAASizeHit CountTotal NormTotal
No Reads
droEle1
ACCCATCTATCATTTTCATTCTATGTTCATAACAGGAATGGGTAACCGAAATCCAATTTG-AATAAAGGCTGGACTTTTCAGT-GGCGAGCATACAG-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATCCATCTAGCATTTTCATCCTGTGTTCATAACAGGAATGGGTAACCGAAAACCAATTTTTAATAAATGCTGGACTTTTCAGT-GGCGAGTATACAGGAATGTATAATTTT-TTGTTTTATTCTTTTTATATAAGGATTTTTATCAAATATTTTTTTAAAAAT---------ATTGTAGTGAATTTCAATTAAAGAGAAGSizeHit CountTotal NormTotal
No Reads
droSec2
AACAATTTAAAATCTATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads

Generated: 05/15/2015 at 02:54 PM