ID:

dmo_2323

 Coordinate:

scaffold_6680:2602173-2602223 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-1.9 -1.9 -1.7

Flybase annnotation

CDS [Dmoj\GI12511-cds]; exon [dmoj_GLEANR_12514:2]; exon [dmoj_GLEANR_12514:3]; CDS [Dmoj\GI12511-cds]; intron [Dmoj\GI12511-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-

Sense Strand Reads

##################################################---------------------------------------------------##################################################
CGCCGCCGAGCAGCAACAACACCCCAGCGATGCCCATGAGCACAACAACAGTAACAGCAACAGCAACAGCAACAACAATGCCATACTAAGCAACAACAACAACAACAATAGCAATATAAACACCAATAGCAAAGCACAATCAACTGGACGC
**************************************************............................(((........))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
.....................CCCCAGCGATGCCCATGAGCACAACA........................................................................................................ 26 0 1 1.00 1 1 0
................................................................AACAGCAACAACAATGCCATACTAAGC............................................................ 27 0 1 1.00 1 0 1
.............CAACAACACCCCAGCGATGCCCATG................................................................................................................. 25 0 1 1.00 1 1 0
...............................................ACAGTAACAGCAACAGCAACA................................................................................... 21 0 20 0.05 1 1 0
...............................................................CAACAGCAACAACAATGC...................................................................... 18 0 20 0.05 1 0 1

Anti-sense strand reads

GCGGCGGCTCGTCGTTGTTGTGGGGTCGCTACGGGTACTCGTGTTGTTGTCATTGTCGTTGTCGTTGTCGTTGTTGTTACGGTATGATTCGTTGTTGTTGTTGTTGTTATCGTTATATTTGTGGTTATCGTTTCGTGTTAGTTGACCTGCG
**************************************************............................(((........))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
..............................................................................................TTGTTGTTGTTGTTATCGT...................................... 19 0 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6680:2602123-2602273 - dmo_2323 CGCCGCCGA---GCAG---------------------------CAACA---A------------------CACC------------CCAGCGATGCCCATGAG-CACAACAACA------------GTAACAGCAACAG----CAACA------------------GCAACAACAATGCC--ATACT-----------------------------AA---------GCAA---CAACA---------------------------------------------------------------------------ACAACAA---------------CAATA------GCAATATAAACACCAATAGC-A-----------AAGCACA--ATCAACTG----------------GACGC
droVir3 scaffold_13049:4188341-4188464 - CGTTGCCGA---GCAA---------------------------CAACAGCAA------------------CACC------------CCAGCGATGCCCACGAG-CACAACAACA----------------------------------------------------------ACAATGCC--ATACTTAACAA--CA------------------ATAA------------------------------------------------------------------------------------------------CAATA---------------------------GCAATACAAATACCAATAGC-A-----------AAGCACA--ATCAACTG----------------GACGC
droGri2 scaffold_15245:10105203-10105353 + AGCCGCCGCA--GCAG---------------------------CAGCA---A------------------CAGCAGC---------------AGCCACTCGAGACACAGCAACA------------ACAACAACAACTA----CAACA------------------GCAACACTATTA-----------------CA------------------ACCATAA------CAA---CAACA---------------------------------------------------------------------------ACAGCAA---------------CAACA------ACAATAGCAACAACAACAAC-AACTT-------AAGCACA--GC--ACTG----------------GATGA
droWil2 scf2_1100000004515:3770478-3770620 - AGCAG--------------------------------------CAACA---------------------ACAGCAACAG------------CATTCCCAGCAG-C--------AGCAAC------------------A------------------------------------------TCATCAACAGCAGCA--GCAACAACAGCAACA---GCA---------GCAT---CAA------------------------------------------------CAG------------------CAACAACAACAGCAG---------------CAACA------------ACAATTGC-------AACACCATTCACAATCACA--ATCAAGTG----------------TCGGC
dp5 XR_group6:4891597-4891735 + TGCCTCCGA---GCCG---------------------------CAACA---------------------ACAGCAGCAGCAGTTCCAGGGGGAACCCAACGAG-CACAACAACA-----------------------------------------------------------------------------------------------------ACA---------ACAA---CAATA----------ACAATAA-------------------CAACAACAA-CAC---------------------------------CAATAATAATAA------------------------CAGCAACAGC-A-----------AAGCACA--ATCATCCGGAA-------------TTCGG
droPer2 scaffold_6:4215981-4216126 + GA----------ACAG---------------------------CTACA---------------------GCTACAGCAG------------------------------------------------CACTTGCAACAG----CAACA------------------GCAACA--------GCATCTGCAACA-----------------------ACA---------GCAA---CAGCA----------ACAACAA-------------------CAGCAGCTA-CTC---------------------------------CAACAACAACAA------------------------CAACAACAGC-A---------CGTATCAAT--GGCAA-CA-GATTGCACCAACAACGGCAC
droAna3 scaffold_13337:9610326-9610473 - TGCCGGCGA---GCAG---------------------------CAACT---A---------------------------------------GACTCCCATGAG-CACAACAACAACAAT------------------G------------------------------------------CCATAACCAATAA--CA------------------ACAA--------------------------------------------------------------CAAC-AACAACAGCAACAATAATAATAATAATAACAATAACAATGGTAATAG------------------------CAACAACAGC-A-----------AAGCACA--ATCAACTG----------------GAAGG
droBip1 scf7180000396569:1726257-1726401 + TGCCGGCGA---CCAG---------------------------CCAGG------------------------------------------AGAGCTCCACGAG-CACAACAACAACAAT------------------G------------------------------------------CCATAACCAATAA--CA------------------ACAA--------------------------------------------------------------CAAC-AACAATAATAATACGAATAGCAACAACACTAACA---------------------------ACAATGGGAATAACAACAGC-A-----------AAGCACA--ATCAACCG----------------GAAGG
droKik1 scf7180000302248:212247-212379 + CCC-ACC-A---CCAG---------------------------CAACA---------------------ACAGCAG-------------------------------------------------------------------CAGCAGCAACA--------------------------ACAGCAG-----------------------CAACACCA---------GCAG---CAGCAGCAACAACAG-----------------------GAG------CAT-TAC---------------------------------CAACAACAACAGCAGCAACA------ACAGA----ATATAGCCAAC-A-----------ATGC-CA--ATCAATTC----------------AACGC
droFic1 scf7180000453052:200306-200441 + CGCCTCCTCCGATCAG---------------------------CAGCT---G------------------CTCC------------AGGGGGATTCCCACGAG-CACAACAACA------------ATAACAACAACAA----CAACA------------------GCAAC----------------------------------------------------------AG---CAACA---------------------------------------------------------------------------ATAACAA---------------CAATA------TCAATATCAACAGCAACAGC-A-----------AAGCACA--ATCAACTG----------------GAAGG
droEle1 scf7180000491001:1867180-1867317 + GC-CACCGC-----GG---------------------------CGGCAACAGCAGCGGAGCAACACCGC-CAAC---------------------------AC---CAGCAACA------------CCAGCAGCAGCAG----CA----------------------------------------------------GCA---GCAGCAGCAGCAACA---------GCAG---CAACA---------T------------------------------------------------------------CAACAGCAGCAG---------------CAACA------------TCAACAGC-------A-----------A--CAGC--AGCAACAG---------------GGACGC
droRho1 scf7180000779333:953887-954029 - AGCAGCGGA---GCAA---------------------------CACCG--------------------G-C---------------------AACTCCAGCAG-C--------AGCATC------------------A-CCACCAGCAGCAGCAGCAGCAGCCCCATCAACATCAACACC-----A-----------------------GCATCAACA---------GCAG---CAGCA---------------------------------------------------------------------------------A---------------CAACATCAACAGCAACATCAACAACAACAGC-A-------------GCAAC--ATCAA-----------------------C
droBia1 scf7180000302193:4351660-4351806 + TC-CGCTGG---GCAGCTCCTC------------------------------------------------CGCTGGC---------------A-----ACCAG-GCTAACAACA------------ACAACAACAATAG----C--------------------------------------AGCACCAACAA--CA------------------ATAACAATA---ATAACAACAACA-------------ATAACAACGAGGAGCAAGTGAAG------CAC-CAC---------------------------------CAGCAACAACAG------------------------CAACAAC----------------------------AGCAG----------------GCCTC
droTak1 scf7180000415809:748239-748389 + TC-CGCTGG---GCAGCTCCTCGGCTGGCAATCAGGCTAACAACAATA---------------------ACAATAGC---------------------------------------------------------------------------------------------------------AGCACCAACAA--CA------------------ACAATAATAGCAACAA---CAACA----------ACAATAACAACGAGGAGCAAGTTAAG------CAA-CAC---------------------------------CAACAGCAGCAA------CA------------G---CAACAAC----------------------------AGCAG---------------GCATCC
droEug1 scf7180000409182:429735-429867 + GC-CGCGGA---GCAA---------------------------CATCT----------------------------------------------CTCCACCGA-AACAAAAACA------------GAAACCGAAACAG----AAACA------------------TCAACAG----------------------CA------------------ACAACAGCAACAGCAA---AAGCA---------------------------------------------------------------------------------A---------------CAACAACAACAGAAAAACAAAACCC-------------------AAAAACAAACAACACAG---------------CAACAC
dm3 chr2L:1499249-1499381 - AGCAG--------------------------------------CAACA---------------------TCAGCAGCAG------------------------------------CAAC------------------A-TCATCAGCAGCAACA--------------------------TCATCAGCAGCA-----ACATCATCA---GCATCAACA---------GCAG---AAACA------TCAA------------------------------------CAG------------------CA------ACAGCAG---------------CAACA------------TCAACAGCAGCAGC-C-----------A--CATC--GTCAACTT----------------GGCAC
droSim2 node_124978:1-140 - CGCCGCTGAT--GCTG---------------------------CAGCAATTG---------------------------------------------GGCGGC-GGTGGCAGTGGCAATGGCAGCAGCAACAACAACAA----CAACA------------------GCAGCAGCAGTGCC--------A--------------------GCAACAACA---------ACAA---CAACA---------A------------------------------------------------------------------CAACA---------------------------ACAGTGCTAGTGCCAACAGC-A-----------A--CATC--ATCAG-----------------------C
droSec2 scaffold_0:8750509-8750668 - CC--GCC-A---GCAG---------------------------CGACAACACTACACCAGCAACATCAG-CAACAACAG------------------------------------------------CAGTTGCAAC---CACCAACA------------------GCAACAGCAGTAC-------CCA--------------G------CAACATCA---------GCAA---CATCA---------G------------------------------------CAG------------------CAACTGCAGCAGCAG---------------CAACA------------CCAACACC-------AACACTATTCTGCAACAGC--AGCAA-CA----------------GACTC
droYak3 X:7838228-7838353 + dya_1354 AGCAG--------------------------------------CAACA---------------------ACAACAGC---------------AGCCCCAACAA-C--------AACAG---------CAGCAGCAACAG----C--------------------------------------AGCA-----------GCAGCAACAACAACA---GCA---------GCAG---CAACA------ACAG------------------------------------------------------------CAGCAGCAGCAA---------------CAACA------------ACAACAGC-------A-------------GCAGC--AGCAA-CA----------------GGTGC
droEre2 scaffold_4690:14226226-14226366 + CGCCGCCCA---CAAA---------------------------CAACA---------------------ACAGCAGCAG---------------------CA------------------------GCAGCAGCAACAA----CAATA------------------ACAACAACAACACT--------A--------------------GCAACAATA---------ACAA---CAACA---------A----TAG-------------------------CAG-CA---------------------------GCAGCAGCAACAACAGCAG------------------------CAGCAACAACAA-----------TAACACA--CCAAACGG----------------CGCGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CGCCGCCGA---GCAG---------------------------CAACA---A------------------CACC------------CCAGCGATGCCCATGAG-CACAACAACA------------GTAACAGCAACAG----CAACA------------------GCAACAACAATGCC--ATACT-----------------------------AA---------GCAA---CAACA---------------------------------------------------------------------------ACAACAA---------------CAATA------GCAATATAAACACCAATAGC-A-----------AAGCACA--ATCAACTG----------------GACGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................CC------------CCAGCGATGCCCATGAG-CACAACA...................................................................................................................................................................................................................................................................................................................2611.001000010
................................................................................................................................................AACA------------------GCAACAACAATGCC--ATACT-----------------------------AA---------GC.............................................................................................................................................................................................2711.001100000
...........................................CAACA---A------------------CACC------------CCAGCGATGCCCATG.............................................................................................................................................................................................................................................................................................................................2511.001000010
...............................................................................................................ACA------------GTAACAGCAACAG----CAACA------------------............................................................................................................................................................................................................................................................21200.051000010
...............................................................................................................................................CAACA------------------GCAACAACAATGC...............................................................................................................................................................................................................................................18200.051100000
droVir3
CGTTGCCGA---GCAA---------------------------CAACAGCAA------------------CACC------------CCAGCGATGCCCACGAG-CACAACAACA----------------------------------------------------------ACAATGCC--ATACTTAACAA--CA------------------ATAA------------------------------------------------------------------------------------------------CAATA---------------------------GCAATACAAATACCAATAGC-A-----------AAGCACA--ATCAACTG----------------GACGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................AATAGC-A-----------AAGCACA--ATCAA........................1911.001000000000000000001000000000000000000000000000000000000000000000
droGri2
AGCCGCCGCA--GCAG---------------------------CAGCA---A------------------CAGCAGC---------------AGCCACTCGAGACACAGCAACA------------ACAACAACAACTA----CAACA------------------GCAACACTATTA-----------------CA------------------ACCATAA------CAA---CAACA---------------------------------------------------------------------------ACAGCAA---------------CAACA------ACAATAGCAACAACAACAAC-AACTT-------AAGCACA--GC--ACTG----------------GATGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................CAGCAGC---------------AGCCACTCGAGA..........................................................................................................................................................................................................................................................................................................................1911.00110
.......................................................................................................................................................................................................................................................................................................................................................................ACAACAAC-AACTT-------AAGCACA--.............................2011.00110
....................................................................................................................................ACAACTA----CAACA------------------GCAACACTATTA-----------------CA------------------...........................................................................................................................................................................................................2611.00110
.................................................................................................................................................................................................................................................................................................................................................................................ACTT-------AAGCACA--GC--ACTG----------------GAT..2011.00110
........................................................................GCAGC---------------AGCCACTCGAGACACA......................................................................................................................................................................................................................................................................................................................2111.00101
.............................................................................................................................................................................................................................................................................................................................................................................AC-AACTT-------AAGCACA--GC--ACTG----------------G....2111.00110
.GCCGCCGCA--GCAG---------------------------CAGCA---A------------------CA..........................................................................................................................................................................................................................................................................................................................................................2150.20110
..............................................................................................................................................................................................................................................................................................................................................................ATAGCAACAACAACAAC-AACT..............................................2150.20110
.................................................................................................................A------------ACAACAACAACTA----CAACA------------------GCAACA......................................................................................................................................................................................................................................................2560.17110
............................................................................................................GCAACA------------ACAACAACAACTA----CA.................................................................................................................................................................................................................................................................................21200.05110
..............................................................................................................................ACAACAACAACTA----CAACA------------------GCA.........................................................................................................................................................................................................................................................21200.05110
......................................................................................................................................................................................................................................A---CAACA---------------------------------------------------------------------------ACAGCAA---------------CAACA------A......................................................................19200.05110
droWil2
AGCAG--------------------------------------CAACA---------------------ACAGCAACAG------------CATTCCCAGCAG-C--------AGCAAC------------------A------------------------------------------TCATCAACAGCAGCA--GCAACAACAGCAACA---GCA---------GCAT---CAA------------------------------------------------CAG------------------CAACAACAACAGCAG---------------CAACA------------ACAATTGC-------AACACCATTCACAATCACA--ATCAAGTG----------------TCGGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................CAACAG------------CATTCCCAGCAG-C--------AGCA.............................................................................................................................................................................................................................................................................................................2311.00100010
.................................................................................................................AGCAAC------------------A------------------------------------------TCATCAACAGCAGC................................................................................................................................................................................................................................2140.75300030
.................................................................................................................................................................................................................ACA---GCA---------GCAT---CAA------------------------------------------------CAG------------------CAACAACA........................................................................................................2430.33100010
.....................................................................................................................AC------------------A------------------------------------------TCATCAACAGCAGCA--GC...........................................................................................................................................................................................................................2090.22200020
..................................................................................................................GCAAC------------------A------------------------------------------TCATCAACAGCAGC................................................................................................................................................................................................................................2050.20100010
.........................................................................................................................................A------------------------------------------TCATCAACAGCAGCA--GCAAC........................................................................................................................................................................................................................2160.17100010
................................................................................................................................................................................................................AACA---GCA---------GCAT---CAA------------------------------------------------CAG------------------CAACA...........................................................................................................2270.14100010
...................................................................................................................CAAC------------------A------------------------------------------TCATCAACAGCAGCA--GCA..........................................................................................................................................................................................................................2380.13100010
....................................................................................................................AAC------------------A------------------------------------------TCATCAACAGCAGCA--G............................................................................................................................................................................................................................2090.11100001
..................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAG---------------CAACA------------ACA..............................................................23200.10200020
................................................................................................................................................................................................................AACA---GCA---------GCAT---CAA------------------------------------------------CAG------------------CA..............................................................................................................19100.10100010
...................................................................................................................CAAC------------------A------------------------------------------TCATCAACAGCAGC................................................................................................................................................................................................................................19120.08100010
...........................................................................................................................................................................................................................................AA------------------------------------------------CAG------------------CAACAACAACAGCAG---------------CAACA------------.................................................................25200.05100010
.........................................................................................................................................................................................AACAGCAGCA--GCAACAACAGCAACA---...........................................................................................................................................................................................................25200.05100100
.........................................................................................................................................A------------------------------------------TCATCAACAGCAGCA--GCA..........................................................................................................................................................................................................................19200.05100010
...........................................................................................................................................................................................................................................AA------------------------------------------------CAG------------------CAACAACAACAGCAG---------------CAA...............................................................................23200.05100100
dp5
TGCCTCCGA---GCCG---------------------------CAACA---------------------ACAGCAGCAGCAGTTCCAGGGGGAACCCAACGAG-CACAACAACA-----------------------------------------------------------------------------------------------------ACA---------ACAA---CAATA----------ACAATAA-------------------CAACAACAA-CAC---------------------------------CAATAATAATAA------------------------CAGCAACAGC-A-----------AAGCACA--ATCATCCGGAA-------------TTCGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................AATA----------ACAATAA-------------------CAACAACAA-CAC---------------------------------C................................................................................................2411.0010010000000
...............................................A---------------------ACAGCAGCAGCAGTTCCA...........................................................................................................................................................................................................................................................................................................................................1950.2010000100000
droPer2
GA----------ACAG---------------------------CTACA---------------------GCTACAGCAG------------------------------------------------CACTTGCAACAG----CAACA------------------GCAACA--------GCATCTGCAACA-----------------------ACA---------GCAA---CAGCA----------ACAACAA-------------------CAGCAGCTA-CTC---------------------------------CAACAACAACAA------------------------CAACAACAGC-A---------CGTATCAAT--GGCAA-CA-GATTGCACCAACAACGGCACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................CAGCA----------ACAACAA-------------------CAGCAGC........................................................................................................................................19200.051100000
..................................................................................................................................................................................................................................................................................................................................AACAACAACAA------------------------CAACAACAGC-..................................................21200.051010000
............................................................................................................................................................................................AACA-----------------------ACA---------GCAA---CAGCA----------ACA......................................................................................................................................................................19200.051010000
droAna3
TGCCGGCGA---GCAG---------------------------CAACT---A---------------------------------------GACTCCCATGAG-CACAACAACAACAAT------------------G------------------------------------------CCATAACCAATAA--CA------------------ACAA--------------------------------------------------------------CAAC-AACAACAGCAACAATAATAATAATAATAACAATAACAATGGTAATAG------------------------CAACAACAGC-A-----------AAGCACA--ATCAACTG----------------GAAGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................TAACAATGGTAATAG------------------------CAACAAC......................................................2212.002000002
..............................................................................................................................................................................................TAA--CA------------------ACAA--------------------------------------------------------------CAAC-AACAAC..............................................................................................................................19200.051010000
............................................................................................................................................................................................AATAA--CA------------------ACAA--------------------------------------------------------------CAAC-AACAACA.............................................................................................................................22200.051010000
droBip1
TGCCGGCGA---CCAG---------------------------CCAGG------------------------------------------AGAGCTCCACGAG-CACAACAACAACAAT------------------G------------------------------------------CCATAACCAATAA--CA------------------ACAA--------------------------------------------------------------CAAC-AACAATAATAATACGAATAGCAACAACACTAACA---------------------------ACAATGGGAATAACAACAGC-A-----------AAGCACA--ATCAACCG----------------GAAGGSizeHit CountTotal NormTotal
No Reads
droKik1
CCC-ACC-A---CCAG---------------------------CAACA---------------------ACAGCAG-------------------------------------------------------------------CAGCAGCAACA--------------------------ACAGCAG-----------------------CAACACCA---------GCAG---CAGCAGCAACAACAG-----------------------GAG------CAT-TAC---------------------------------CAACAACAACAGCAGCAACA------ACAGA----ATATAGCCAAC-A-----------ATGC-CA--ATCAATTC----------------AACGCSizeHit CountTotal NormTotal
No Reads
droFic1
CGCCTCCTCCGATCAG---------------------------CAGCT---G------------------CTCC------------AGGGGGATTCCCACGAG-CACAACAACA------------ATAACAACAACAA----CAACA------------------GCAAC----------------------------------------------------------AG---CAACA---------------------------------------------------------------------------ATAACAA---------------CAATA------TCAATATCAACAGCAACAGC-A-----------AAGCACA--ATCAACTG----------------GAAGGSizeHit CountTotal NormTotal
No Reads
droEle1
GC-CACCGC-----GG---------------------------CGGCAACAGCAGCGGAGCAACACCGC-CAAC---------------------------AC---CAGCAACA------------CCAGCAGCAGCAG----CA----------------------------------------------------GCA---GCAGCAGCAGCAACA---------GCAG---CAACA---------T------------------------------------------------------------CAACAGCAGCAG---------------CAACA------------TCAACAGC-------A-----------A--CAGC--AGCAACAG---------------GGACGCSizeHit CountTotal NormTotal
No Reads
droRho1
AGCAGCGGA---GCAA---------------------------CACCG--------------------G-C---------------------AACTCCAGCAG-C--------AGCATC------------------A-CCACCAGCAGCAGCAGCAGCAGCCCCATCAACATCAACACC-----A-----------------------GCATCAACA---------GCAG---CAGCA---------------------------------------------------------------------------------A---------------CAACATCAACAGCAACATCAACAACAACAGC-A-------------GCAAC--ATCAA-----------------------CSizeHit CountTotal NormTotal
No Reads
droBia1
TC-CGCTGG---GCAGCTCCTC------------------------------------------------CGCTGGC---------------A-----ACCAG-GCTAACAACA------------ACAACAACAATAG----C--------------------------------------AGCACCAACAA--CA------------------ATAACAATA---ATAACAACAACA-------------ATAACAACGAGGAGCAAGTGAAG------CAC-CAC---------------------------------CAGCAACAACAG------------------------CAACAAC----------------------------AGCAG----------------GCCTCSizeHit CountTotal NormTotal
No Reads
droTak1
TC-CGCTGG---GCAGCTCCTCGGCTGGCAATCAGGCTAACAACAATA---------------------ACAATAGC---------------------------------------------------------------------------------------------------------AGCACCAACAA--CA------------------ACAATAATAGCAACAA---CAACA----------ACAATAACAACGAGGAGCAAGTTAAG------CAA-CAC---------------------------------CAACAGCAGCAA------CA------------G---CAACAAC----------------------------AGCAG---------------GCATCCSizeHit CountTotal NormTotal
No Reads
droEug1
GC-CGCGGA---GCAA---------------------------CATCT----------------------------------------------CTCCACCGA-AACAAAAACA------------GAAACCGAAACAG----AAACA------------------TCAACAG----------------------CA------------------ACAACAGCAACAGCAA---AAGCA---------------------------------------------------------------------------------A---------------CAACAACAACAGAAAAACAAAACCC-------------------AAAAACAAACAACACAG---------------CAACACSizeHit CountTotal NormTotal
No Reads
dm3
AGCAG--------------------------------------CAACA---------------------TCAGCAGCAG------------------------------------CAAC------------------A-TCATCAGCAGCAACA--------------------------TCATCAGCAGCA-----ACATCATCA---GCATCAACA---------GCAG---AAACA------TCAA------------------------------------CAG------------------CA------ACAGCAG---------------CAACA------------TCAACAGCAGCAGC-C-----------A--CATC--GTCAACTT----------------GGCACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................GCAGCAG------------------------------------CAAC------------------A-TCATCAGCAGCAA..........................................................................................................................................................................................................................................................................2521.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TCATCAGCAGCA-----ACATCATCA---GCATC............................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AGCAGCAG------------------------------------CAAC------------------A-TCATCAGCA..............................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AGCAGCAG------------------------------------CAAC------------------A-TCATCAGC...............................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................CAGCAACA--------------------------TCATCAGCAGCA-----AC...........................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CAG------------------------------------CAAC------------------A-TCATCAGCAGCAAC.........................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CAGCAG---------------CAACA------------TCAACAGC.........................................................19200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................ACA---------------------TCAGCAGCAG------------------------------------CAAC------------------A-TC.....................................................................................................................................................................................................................................................................................2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................CAGCAGCAACA--------------------------TCATCAGCAG....................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................AGCAGCA-----ACATCATCA---GC...............................................................................................................................................................................................................18100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................AGCAGCAACA--------------------------TCATCAGC......................................................................................................................................................................................................................................18100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................CAGCAG------------------------------------CAAC------------------A-TCATCAGCAG.............................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CAG--------------------------------------CAACA---------------------TCAGCAGCAG------------------------------------CAAC------------------A-T......................................................................................................................................................................................................................................................................................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CAG---------------CAACA------------TCAACAGCAGCAG....................................................21100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
..........................................................................AGCAG------------------------------------CAAC------------------A-TCATCAGC...............................................................................................................................................................................................................................................................................18100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................A------TCAA------------------------------------CAG------------------CA------ACAGCAG---------------CA................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................GCAGCAACA--------------------------TCATCAGCAG....................................................................................................................................................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................AGCAGCAACA--------------------------TCATCAGCAGC...................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................AGCAG------------------------------------CAAC------------------A-TCATCAGCAGC............................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................GCAG------------------------------------CAAC------------------A-TCATCAGCAG.............................................................................................................................................................................................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................A------TCAA------------------------------------CAG------------------CA------ACAGCAG---------------C.................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................CAGCAGCA-----ACATCATCA---GC...............................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................CAGCAG------------------------------------CAAC------------------A-TCATCAGC...............................................................................................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................CAGCAGCAACA--------------------------TCATCAGC......................................................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................AGCAGCA-----ACATCATCA---GCA..............................................................................................................................................................................................................1990.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................AGCAGCAACA--------------------------TCATCAGCA.....................................................................................................................................................................................................................................1990.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................GCAGCA-----ACATCATCA---GCA..............................................................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................GCAG------------------------------------CAAC------------------A-TCATCAGCA..............................................................................................................................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................GCAGCAACA--------------------------TCATCAGCA.....................................................................................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................AGCAG------------------------------------CAAC------------------A-TCATCAGCA..............................................................................................................................................................................................................................................................................1990.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................................CAACA---------------------TCAGCAGCAG------------------------------------CAAC------------------.........................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................AG---------------CAACA------------TCAACAGCAGCAGC-..................................................21100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CAACA---------------------TCAGCAGCAG------------------------------------CAAC------------------A-.......................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....G--------------------------------------CAACA---------------------TCAGCAGCAG------------------------------------CA.............................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TCAGCAGCAG------------------------------------CAAC------------------A-TCA....................................................................................................................................................................................................................................................................................18130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................AACA------------TCAACAGCAGCAGC-..................................................18140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................GCAG---------------CAACA------------TCAACAGCAGC......................................................20150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AG--------------------------------------CAACA---------------------TCAGCAGCAG------------------------------------CAAC------------------A-.......................................................................................................................................................................................................................................................................................22160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................GCAG---------------CAACA------------TCAACAGCAG.......................................................19180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................ACAGCAG---------------CAACA------------TCAACA...........................................................18190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AGCAG---------------CAACA------------TCAACAGC.........................................................18200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................AG------------------CA------ACAGCAG---------------CAACA------------TC...............................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCAG--------------------------------------CAACA---------------------TCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................AG---------------CAACA------------TCAACAGCAGC......................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CAG---------------CAACA------------TCAACAGCAGC......................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGCAG--------------------------------------CAACA---------------------TCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................G---------------CAACA------------TCAACAGCAGCA.....................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
droSim2
CGCCGCTGAT--GCTG---------------------------CAGCAATTG---------------------------------------------GGCGGC-GGTGGCAGTGGCAATGGCAGCAGCAACAACAACAA----CAACA------------------GCAGCAGCAGTGCC--------A--------------------GCAACAACA---------ACAA---CAACA---------A------------------------------------------------------------------CAACA---------------------------ACAGTGCTAGTGCCAACAGC-A-----------A--CATC--ATCAG-----------------------CSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CC--GCC-A---GCAG---------------------------CGACAACACTACACCAGCAACATCAG-CAACAACAG------------------------------------------------CAGTTGCAAC---CACCAACA------------------GCAACAGCAGTAC-------CCA--------------G------CAACATCA---------GCAA---CATCA---------G------------------------------------CAG------------------CAACTGCAGCAGCAG---------------CAACA------------CCAACACC-------AACACTATTCTGCAACAGC--AGCAA-CA----------------GACTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................TCA---------G------------------------------------CAG------------------CAACTGCAGCAGCA..................................................................................................2111.0010010
..............................................................................................................................................................................................................................................................................................................................CAG---------------CAACA------------CCAACACC-------AACA..............................................2030.3310010
...............................................................CATCAG-CAACAACAG------------------------------------------------CAG................................................................................................................................................................................................................................................................................................1840.2510010
.............................................................................................................................................................................................................................................CA---------G------------------------------------CAG------------------CAACTGCAGCAGCAG---------------C.................................................................................22200.0510010
droYak3
AGCAG--------------------------------------CAACA---------------------ACAACAGC---------------AGCCCCAACAA-C--------AACAG---------CAGCAGCAACAG----C--------------------------------------AGCA-----------GCAGCAACAACAACA---GCA---------GCAG---CAACA------ACAG------------------------------------------------------------CAGCAGCAGCAA---------------CAACA------------ACAACAGC-------A-------------GCAGC--AGCAA-CA----------------GGTGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................A------------ACAACAGC-------A-------------GCAGC--AGCAA-CA----------------GGT..2530.33100010000000
.........................................................................................................................................................................................................................A---------GCAG---CAACA------ACAG------------------------------------------------------------CAGCAGCAGC...................................................................................................24200.15303000000000
...................................................................................................................................................................................................................................GCAG---CAACA------ACAG------------------------------------------------------------CAGCAGC......................................................................................................20200.15303000000000
...................................................................................................................................................................................................................................GCAG---CAACA------ACAG------------------------------------------------------------CAGCAGCAGC...................................................................................................23200.15303000000000
.............................................................................................................................................................................................................................................................................................................................GCAA---------------CAACA------------ACAACAGC-------A-------------GCAGC--AGC..........................2690.11101000000000
.....................................................................................................................................................................................................GCAGCAACAACAACA---GCA---------GCAG---CA......................................................................................................................................................................................24200.10202000000000
.................................................................................................CAACAA-C--------AACAG---------CAGCAGCA...........................................................................................................................................................................................................................................................................................20200.10200000020000
.................................................................................................................................................................................................................................................................................................................................................AACA------------ACAACAGC-------A-------------GCAGC--AGCAA-CA----------------G....26110.09101000000000
......................................................................................................................................................................................................................................................................................................................................................................AGC-------A-------------GCAGC--AGCAA-CA----------------GGT..19110.09101000000000
..........................................................................................................................................................................................................................................................................................................................GCAGCAA---------------CAACA------------ACAACAGC-------A-------------GCAGC--A............................27120.08101000000000
............................................................................................................................................................................................................................................................................................................................AGCAA---------------CAACA------------ACAACAGC-------A-------------GC..................................21200.05101000000000
.................................................................................................CAACAA-C--------AACAG---------CAGCAG.............................................................................................................................................................................................................................................................................................18200.05100000000001
....................................................................................................CAA-C--------AACAG---------CAGCAGCAAC.........................................................................................................................................................................................................................................................................................19200.05100100000000
..................................................................................................AACAA-C--------AACAG---------CAGCAGCA...........................................................................................................................................................................................................................................................................................19200.05100000100000
............................................................................................................................................................................................................................................ACA------ACAG------------------------------------------------------------CAGCAGCAGCAA---------------C.................................................................................20200.05101000000000
........................................................................................................C--------AACAG---------CAGCAGCAACAG----C--------------------------------------AGCA-----------GCA..........................................................................................................................................................................................................................26200.05100010000000
............................................................................................................................................................................................................................................ACA------ACAG------------------------------------------------------------CAGCAGCAGCAA---------------CAAC..............................................................................23200.05100100000000
....................................................................................................................................................................................................................................................................................................................................................A------------ACAACAGC-------A-------------GCAGC--AGCA.........................19200.05100001000000
.....................................................................................................................G---------CAGCAGCAACAG----C--------------------------------------AGCA-----------GCAGCA.......................................................................................................................................................................................................................24200.05101000000000
AGCAG--------------------------------------CAACA---------------------ACAACAGC---------------AGC...................................................................................................................................................................................................................................................................................................................................21200.05100100000000
AGCAG--------------------------------------CAACA---------------------ACAACAGC---------------......................................................................................................................................................................................................................................................................................................................................18200.05100010000000
.................................................................................................................................................................................................................................................................................................................................................AACA------------ACAACAGC-------A-------------GCAGC--AGCA.........................22200.05101000000000
......................................................................................................................................................................................AGCA-----------GCAGCAACAACAACA---GCA---------...............................................................................................................................................................................................22200.05101000000000
...............................................................................................................................CAGCAGCAACAG----C--------------------------------------AGCA-----------GCAGCA.......................................................................................................................................................................................................................23200.05100000010000
......................................................................................................................................................................................AGCA-----------GCAGCAACAACAACA---GCA---------GCAG---C.......................................................................................................................................................................................27200.05101000000000
.......................................................................................................................................................................................GCA-----------GCAGCAACAACAACA---GC.........................................................................................................................................................................................................20200.05101000000000
....................................................................................................CAA-C--------AACAG---------CAGCAGCAACA........................................................................................................................................................................................................................................................................................20200.05100000010000
....................................................................................................CAA-C--------AACAG---------CAGCAGCAACAG----C--------------------------------------AG..........................................................................................................................................................................................................................................24200.05101000000000
......................................................................................................................................................................................................................................G---CAACA------ACAG------------------------------------------------------------CAGCAGCAGC...................................................................................................20200.05100100000000
.........................................................................................................................................................................................................CAACAACAACA---GCA---------GCAG---C.......................................................................................................................................................................................19200.05101000000000
................................................................................................................................................................................................................................................................................................................................................CAACA------------ACAACAGC-------A-------------GCAGC--A............................20200.05100001000000
..........................................................................................................................................................................................................AACAACAACA---GCA---------GCAG---CAACA------ACA..........................................................................................................................................................................25200.05101000000000
.......................................................................................................................................................................................................AGCAACAACAACA---GCA---------GCA............................................................................................................................................................................................19200.05100000010000
........................................................................................................................................................................................................GCAACAACAACA---GCA---------GCAG---C.......................................................................................................................................................................................20200.05101000000000
.....................................................................................................................................................................................................GCAGCAACAACAACA---GCA---------GCAG---CAAC....................................................................................................................................................................................26200.05100010000000
droEre2
CGCCGCCCA---CAAA---------------------------CAACA---------------------ACAGCAGCAG---------------------CA------------------------GCAGCAGCAACAA----CAATA------------------ACAACAACAACACT--------A--------------------GCAACAATA---------ACAA---CAACA---------A----TAG-------------------------CAG-CA---------------------------GCAGCAGCAACAACAGCAG------------------------CAGCAACAACAA-----------TAACACA--CCAAACGG----------------CGCGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................CAACAATA---------ACAA---CAACA---------A----TAG-------------------------CAG-C....................................................................................................................................2512.0020000002
..................................................................................................................................................................................................................................................................................................................................AACAACAGCAG------------------------CAGCAACAACAA-----------TAACAC................................2911.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................AA-----------TAACACA--CCAAACGG----------------CGC..2011.0010000100
.........................................................................................................................................................................................................................A---------ACAA---CAACA---------A----TAG-------------------------CAG-CA---------------------------GCAGCAGC................................................................................................2711.0011000000
............................................................................................................................................................................................................................................................................................................................................................................AACAA-----------TAACACA--CCAAACGG----------------C....2111.0011000000
.........................................................................................................................................................................................................................................................................................................................................GCAG------------------------CAGCAACAACAA-----------TAAC..................................2050.2010100000
..............................................................................................................................GCAGCAGCAACAA----CAATA------------------AC..........................................................................................................................................................................................................................................................2050.2010100000
.............................................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCAG------------------------CAGCAACAAC...................................................2660.1710100000
..............AA---------------------------CAACA---------------------ACAGCAGCAG---------------------CA------------------------GCAGCA..............................................................................................................................................................................................................................................................................................25200.1021000010
..........................................................................................................................................................................................................................................................................................AG-CA---------------------------GCAGCAGCAACAACAGCAG------------------------CA...........................................................25200.0510001000
............................................AACA---------------------ACAGCAGCAG---------------------CA------------------------GCA.................................................................................................................................................................................................................................................................................................19200.0510000010
....................................................................................................................................................................................................................................................................................................................................CAACAGCAG------------------------CAGCAACAACA..................................................20200.0511000000
..............................................................................................................................................................................................................................................................AG-------------------------CAG-CA---------------------------GCAGCAGCAACAACAGCAG------------------------CA...........................................................28200.0511000000
....................................................................................................................................................................................................................................................................................................................................CAACAGCAG------------------------CAGCAACAAC...................................................19200.0511000000
...............................................................................................................................................................................................................................................................G-------------------------CAG-CA---------------------------GCAGCAGCAACAACAGC.......................................................................................23200.0510000010
...........................................................................................................................................................................................................................................................................................G-CA---------------------------GCAGCAGCAACAACAGCAG------------------------CA...........................................................24200.0511000000
................................................................................................................................................................................................................................................................................................................................GCAACAACAGCAG------------------------CAGCAACA.....................................................21200.0510000100
...............A---------------------------CAACA---------------------ACAGCAGCAG---------------------CA------------------------GC..................................................................................................................................................................................................................................................................................................20200.0511000000
..............AA---------------------------CAACA---------------------ACAGCAGCAG---------------------CA------------------------G...................................................................................................................................................................................................................................................................................................20200.0511000000
.......................................................................AGCAGCAG---------------------CA------------------------GCAGCAGCAACA........................................................................................................................................................................................................................................................................................22200.0510001000
...........................................CAACA---------------------ACAGCAGCAG---------------------CA------------------------GC..................................................................................................................................................................................................................................................................................................19200.0510000010

Generated: 05/18/2015 at 02:23 AM