dmo_2311

Name	Class	Family	Strand
TART_DV	LINE	Jockey	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGTGCGTGATGAAATTATACATGATCTCATACGTGAGGCAAGCCATTCAGGTAAGTGCCGCCACTTGCGTCGAGGCTACTTCAGCACAAGCAACAACAACAACAACAACAAAAACAGCAGCAGTAGCAGCAACATCAGGAAGAGGGCCATTTCATAGAAATGTTGTCGCAGAGCCAAACAATAGTTCGTTGTGGCTAGACCGCTTTCGATGAATGTGTGTGTGTGTGTGTGGGTGGGTGGGTGCTTGTGTT ************************************************(((((((....)))))))(((...((((((...((...............................))...)))))).(((((((......((((....))))......))))))).....((((((((........))).))))).))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body
.............ATTATACATGATCTCATACGT.........................................................................................................................................................................................................................	21	0	1	2.00	2	2	0
................................GTGAGGCAAGCCATTCAGGC.......................................................................................................................................................................................................	20	1	1	1.00	1	1	0
.............ATTATACATGATCTCATACGTGA.......................................................................................................................................................................................................................	23	0	1	1.00	1	1	0
...............TATACATGATCTCATACGTGAGGCAAGCC...............................................................................................................................................................................................................	29	0	1	1.00	1	0	1
..........................................................................GTTACATCAGCACAAGCGAC.............................................................................................................................................................	20	3	8	0.13	1	0	1
....................................................................................................AACAACAACAAAAACAGCAG...................................................................................................................................	20	0	10	0.10	1	1	0
..............................................................................................AACAACAACAACAACAAAAACAGC.....................................................................................................................................	24	0	11	0.09	1	1	0
...............................................................................................................................................................................................................................TTTGTGAGGGAGGGTGGGTGC.......	21	3	17	0.06	1	1	0
..............................................................................................................................................................................................................................GTGTGTGTGGGTGGGTGGG..........	19	0	20	0.05	1	0	1
................................................................................................................................................................................................................................GTGTGTGGGTGGGTGGGT.........	18	0	20	0.05	1	0	1

ACACGCACTACTTTAATATGTACTAGAGTATGCACTCCGTTCGGTAAGTCCATTCACGGCGGTGAACGCAGCTCCGATGAAGTCGTGTTCGTTGTTGTTGTTGTTGTTGTTTTTGTCGTCGTCATCGTCGTTGTAGTCCTTCTCCCGGTAAAGTATCTTTACAACAGCGTCTCGGTTTGTTATCAAGCAACACCGATCTGGCGAAAGCTACTTACACACACACACACACACCCACCCACCCACGAACACAA ************************************************(((((((....)))))))(((...((((((...((...............................))...)))))).(((((((......((((....))))......))))))).....((((((((........))).))))).))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	V049 head
.............................................................................TGAAGTCGTGTTGTGTGTTG..........................................................................................................................................................	20	3	20	0.15	3	2	1
......................................................................................................GTTGTTGGTTTAGTCGTCGTCA...............................................................................................................................	22	2	10	0.10	1	1	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6680:2100580-2100830 +	dmo_2311	TGTGCGTGATGAAATTATACATGATCTCATAC-GTGAGGCAAGCCA------TTCAGGT--AAGTGCCGCCACTTGCGTCGA-GGCTACTTCAGCACA-------------AG------CAACAACAA------CAACAACAACAAAAACAGCAG------CA------------GT---A---GCAGCAACATC----------------------------------------------------------AGG------AAGAGGGCCATT----------------------TC-A---T-----------------------AGAAAT-------GTTGTCGCAGA------GCCAA--ACAATAGTTCGTT-------------GT------------------------------------------------------------------------------------------------------------------------------------GGCT--AG----ACCGCTTTCGATGA--------------------ATG------------TG----------------------------------------TGTGTGTGTGTGTGGGT------------GGGTGG-----GTG-C---------------------------------------------TTGTGTT---
droVir3	scaffold_10322:47094-47295 +		TGTGCGTGATGAAATTATTCATGATCTTATAC-GTGAGGCGAGCCA------TTCAGGT--AAGTGAC---------------------ACTTG----CAC---C------TGCACAAGTGG---CCACAA------GAGCTAC------ATTTT------AA------------------------------------------------------------------------------------------------------------------------------------------------------------C---TAACACAAAT-------GTTGCCGCAAA------GCCAA--GCAACAGGCTGCT-------------GTCAACTCCCCCATTGAGAGAGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------TG------------TG----------------------------------------CGAGAGTGTGTGTGTGT------------GTGTGT-----ATG-C-------------------------------------------T-GTGTGTT---
droGri2	scaffold_14853:6870607-6870873 -		TGTGCAAGATGTAAATACAGCTAAA-----AA-GT----------AGGC---TTCA--A--AAATGGCGCAG------CTTA-GGCAACAAC-------------------AA---CAGCAA---CAACAACAGCAACAACAGC------AGCAA------CA---ACAACAGCAAC---A------ACAACAGC---------------------------------------------AAC----------AGC------------------------------AACAAT-------AGTAATA-------------TCAA---C-----TATGGC-------TGCA----------------------------------------------------------------------------------ACAACAAGCCGCAGCCCCGCCCACAATATGAGCTCAAAGTGCGT-GTTGGGCACCATGGCGTATGA----------------------GCAATGC--GAGC----TCTC---------------------------------------------------------------ATTCTGTGTGC----------------CAGTG--------T------------GTGT-------GTG-TGTGTGT---------------------------------------ATGAGT----
droWil2	scf2_1100000004921:2274644-2274807 +		CA-------------------------------------------------------------------------------------------GCAGC-------------AG------------CAACAGCAGCAACAACAACAATAACGTCGG------CA------------GC---A---ACGACAACGTTGTGAATTTTGATTCTGG-GTC-------------------------------------ATT----------CACCCTTG-------------AC----------A---AAA-------------AA----------AT-------ATTTGCGCT-----------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------TGTTAGGCCG-------------------------------------------------------------------------CCTTTGTATATGTATGTGTATGTG------------TATGTATGGATGT-----TTG-T---------------------------------------------TTGTGCT---
dp5	4_group3:9512768-9512946 -		TTCGGCC--------------------------------------------------------------------------------GA----------AA---C------AACTACAA---------------CAACAACAACAGAAGCAGCAG------CA------------GC---A---GCAGCAGTAGC---------------------------------------------AGA----------------------G-------------AAACAGCAACA-------------A--------------------------------------------------------------------------------------GCAGACAACATGGATGAAAGAGCGAGCGCGAAGATCATCATATACTT-ACCGTAATC------------------------------------------------------------------------------------------------------------GTATCGTGAATGAATATC------------TT---------------------------------------------GTC----TATGT------------GTGAGAGGCGTGCTCT---------------------------------------------ACGTGT----
droPer2	scaffold_0:3560708-3560889 +		CGTTGTTTAA-------------------------------------------------------------------GCAGA-TGCAACAACAA----------C------AG---CAGCAA---AAACAA---CAACAAC---------AACAA------AAACAACA---GCAAT---A---G---CAGCAGC---------------------------------------------AGC----------AGC------------------------------AGTC-------AAA---TATTGAAAG-----C-TCAG---C-----CATGCCAT----------------------------------------------------------------------------------------CATGTATTAAATTGTACTC------------------------------------------------------------------------------------------------------------CCTCCGTAAATTCGCTTC------------TT------GGTGTTTGTG----------T------------------------TAGCGT------------GTGT-------GTG-C---------------------------------------------ATCTGTG---
droAna3	scaffold_13340:7260769-7260982 +		CAAGCA--------------------------------------------------------AGTG-------------------CAACAACAG----------C------AGCAGC---AACAGCAA------CAACAGCAGC------AGCAACAACAACA---------GCAAC---A------GCACCAGC---------------------------------------------AGC-------AGCAGCAACAGC------------------------CCCA-------------GGA-------------CC-A---C-----CACTCCATCATCTCGCACAATCCGGGCCACTTGCACCACTCCGTGGTGGGTCAGAACGA-------------------------------------------------------------------------------------------------------------------------------------------TCTCAAGCTC-------------------------------------------------------------------------GGCCTGGGAATGGGCGTCGGCGTG------------GGAGTGGGCGTGG-----GCG-G---------------------------------------------TGGTATT---
droBip1	scf7180000396554:1520990-1521162 -		GAGGC---------------------------------------------------------------------------------AACAGCAG----CAC---C------AG------CAACAACAA------CAAAAAAAAC---AACAACAA------CA---AAA------AC---A---ACAACAAC------------------------------------------------AAC----------AAA------AAGA-------------------------------------A-C------TGCGAAGTAATAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAAATACC----AG------------------ACGG--------------------------ACGCGCTCTTTTGGCGCTGGGTGCATG----------------------------------T--G------------T------------GTGT-------GTG-TGATGTG--ATGGGTC-----------------GGCTCGTT---TTTTGTTTT---
droKik1	scf7180000302706:1947573-1947706 +		AGG-CA---------------------A--GCTCA---------GG------CTCAC-AAAGAGTGGCCTAATTAGTGTCAAGTGTTGC----------CCCAACAACGACAACAAC---GA---CAG------CGACGACAGC---AACAGCAG------CA------------GC---AGCAGCAGCAACATC----------------------------------------------------------AGG------CACA------------------GCAGCAACT---TC-AATGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000454077:1838405-1838652 +		TGTGTGTGGCAAAACTTT---TGATTTCTTTCGGTAAGGCGGGCCAGATTTTTACAGCC--AAGCGCC-----------CGA-GGCAAAAGC-------------------AACAAC---AA---CAACAACTTTAAT---------AACAACAA------TA------------AT---A---ACAACAAAAAC---------------------------------------------AGCGAGCGGCAAAAGT---------A-----------------AGTTACT-------------AAG-------------TCAAAATT--------GGC--------T-T----------------------------------------------------------------------------------ATAACGGGACGCACTTTCACTTA----------------------------------------------------AA----CGCAGCTGAAGTCGCT--GC----TCTCTTTCCG------------CTG------------------------TGTGTGTG----------------------------------T--GTGTG------TGT------------GTGT-------GTG-T---------------------------------------------GTGTGTG---
droEle1	scf7180000490214:840017-840195 -		AGCAGC---------------------------------------------------------------------------------------------------------AG---T---TG---CAG------CAGCATCAGC---AGCAGCAG------CA------------GT---A---GCAGCAGCATCATAAGCCCTGAATCCGCCGGCGTCTGACCGCAAATTCGTAACATCAAC----------AAA-------------------------------------------AATGAAA-------------T---TAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAAA-GTT----GC--------CCAA------CCAGCCATGCATGT--------------------ATC------------TG------TGTGTGTGTG----------T------------------------AAGTGT------------GTGTGT-----GTG-T---------------------------------------------ATGTGTA---
droRho1	scf7180000779999:262069-262166 -		CA-------------------------------------------------------------------------------------------GCAGC-------------AG---C---AACACCAA------CAACAGCAACACCAACAGCAT------CA---------GCAAC---A------GCAGCAGC----------------------------------------------------------AGC------AGCATATCCATG-------------CC----------C---A-----------------------GCAGAT-------GTTGGCCCAAA------GTCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302126:2535204-2535301 +		GTAAC-----------------------------------------------------------TGCCGCTG------CTGC-AGC-------------------------GGCAAC---ATCAGCAT------CATCAGCAGC------AACAGCAGCAGCAGCAACAGCAGCAGC---A---G---CAGCAAC----------------------------------------------------------AAC---GGC------------------------CGCA-------------GAG-------------TGCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415128:82006-82100 -		TACT------------------------------TGCAGCAGCCCA------CTCAAAC--GAGTGCC---------------------ACGAG----CAA---C------AACAGCAGCAA---CAACCACAGCAGCAGCAGC---AACAACAG------CA------------GC---A---GCAACAACATC----------------------------------------------------------AG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409466:612312-612474 -		TACAGC-------------------------------------------------------------AGC-----------------GC----------------------AG---CAGCAA---CAACAACAACAACAGCAACAACAACACCAG------CA------------------------GCAAAAGC---------------------------------------------AAC----------AAA---------A---------------------GC--------------------------------------------------------------------------------------------------------------------------------------------------------GCAC---------------------------------------------------------TTCAAACGCC----GC------------------A--------------------------TGTTCGTATC------------CG------TGTCTTGCTG----------C------------------------CTCTGT------------GTGT-------GTG-TTTCTGTGT--TAAT-GAAAGAGAGAGGACATG-------CAGCT-GTAAATA---
dm3	chrX:20228556-20228711 +		CA-------------------------------------------------------------------------------------------GCAGC-------------AA------------CAACAGCAGCAGCAGCAGCAGCAGCAGCAG------CA------------GT---A---GCAGCAACATC----------------------------------------------------------AAC------GGC---------------------GGCTACGCGTTC-A----AG-------------TG-A---A---------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------AGTC----------CGCAGC------TGCT--GC----CC-GCACTTCATGTACTTCGCACTG------------------------TGAGTGTG----------------------------------T--GTGTG----TGTGT------------GCGAGA-----GTG-T---------------------------------------------ATGTGT----
droSim2	2r:7962427-7962633 -		AGC------------------------------------------------------------------------------------------------AA---C------AA------------CAACAA---CAACAACAAC---AAAGGCAT------CA------------GTGGCA------GCAGCAGC----------------------------------------------------------AGC------A---------TTTAGTGGAATGGTGGGG-------------G--------------------------------------------------------------------------------------GCGAGGGAAGTGGAA-AGAGGGAGGGTGTGGAG---------------------------------AGGCGGGCGGGTAGTGGGTCGCTGGGCGTTGTGGCGTTCGAC----GTCGAAGGCC----------------TG------GCTG--------------------------CC-----------------------------------AGTC------------TGTACGTGT----GTG--------TATGTATGAGTGTGTGT-------GGG-C---------------------------------------------CGTTCCT---
droSec2	scaffold_11:2707655-2707759 -		CACCAC----------------------------------------------------T-------------AAGGTGCGGC-------GACAG----CAA---C------AACAGCAGCAC---CAACAA------C---AGC---AACAGCAG------CAGCAACA---GCAGC---A---G---CAGCAGC---------------------------------------------AAC----------AGC------------------------------AGCA-------------GAA-------------TA-A---C---------------------------------------------------------------------AACGCT-----------------------------------------------------------------------------------------------------------GTC----GC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	3L:10661482-10661673 +		CGTTGGGTGGGGGATTTT-CGTAAGCTT--CCGCT---------TA------TGTAT-A---------------------AA--ACTTTTTCGGCAGC-CC---C------AG---CAGTAA---CAACTACAACAAGAACAACAACAACAGCAA------CA---------ACAAT---A------AGAAGAAG----------------------------------------------------------------------A-------------ATACAACAACTATG---GC-A---ATA-------------TG-A---G---------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------TGGC----------TGCTGC------T--------------------G------------CAG------------------------TGGGTGGG----------------------------------T--GGGGG------TGT----------T-GAGT-------GGG-C--------------------------------GG-----------CTGGGTGCTT
droEre2	scaffold_4784:12689528-12689614 -		GTCGCC----------------------------------------------------T-------------TCTGTGCAGA-AGC-ACAG-------------C------AGCAGCAGCAA---CAACAA------CAGCAGCAGCAACAGCAA------CA---------GCAGC---A---G---CAGCAGC---------------------------------------------AAC----------AGC------------------------------AACA-------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

TGTGCGTGATGAAATTATACATGATCTCATAC-GTGAGGCAAGCCA------TTCAGGT--AAGTGCCGCCACTTGCGTCGA-GGCTACTTCAGCACA-------------AG------CAACAACAA------CAACAACAACAAAAACAGCAG------CA------------GT---A---GCAGCAACATC----------------------------------------------------------AGG------AAGAGGGCCATT----------------------TC-A---T-----------------------AGAAAT-------GTTGTCGCAGA------GCCAA--ACAATAGTTCGTT-------------GT------------------------------------------------------------------------------------------------------------------------------------GGCT--AG----ACCGCTTTCGATGA--------------------ATG------------TG----------------------------------------TGTGTGTGTGTGTGGGT------------GGGTGG-----GTG-C---------------------------------------------TTGTGTT---	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............ATTATACATGATCTCATAC-GT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
.................................GTGAGGCAAGCCA------TTCAGGC--..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.............ATTATACATGATCTCATAC-GTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...............TATACATGATCTCATAC-GTGAGGCAAGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................AACAACAACAAAAACAGCAG------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	10	0.10	1	1	0	0	0	0	0
...........................................................................................................................AACAA------CAACAACAACAAAAACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	11	0.09	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGGGT------------GGGTGG-----G...........................................................	19	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGGGT------------GGGTGG-----GT..........................................................	18	20	0.05	1	0	0	0	0	0	1

droVir3

TGTGCGTGATGAAATTATTCATGATCTTATAC-GTGAGGCGAGCCA------TTCAGGT--AAGTGAC---------------------ACTTG----CAC---C------TGCACAAGTGG---CCACAA------GAGCTAC------ATTTT------AA------------------------------------------------------------------------------------------------------------------------------------------------------------C---TAACACAAAT-------GTTGCCGCAAA------GCCAA--GCAACAGGCTGCT-------------GTCAACTCCCCCATTGAGAGAGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------TG------------TG----------------------------------------CGAGAGTGTGTGTGTGT------------GTGTGT-----ATG-C-------------------------------------------T-GTGTGTT---	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................CATGATCTTATAC-GTGAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------TG----------------------------------------CGAGAGTGTGTGTGTGT------------G......................................................................	22	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAGTGTGTGTGTGT------------G......................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------------------CGAGAGTGTGTGTGTGT------------.......................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droGri2

TGTGCAAGATGTAAATACAGCTAAA-----AA-GT----------AGGC---TTCA--A--AAATGGCGCAG------CTTA-GGCAACAAC-------------------AA---CAGCAA---CAACAACAGCAACAACAGC------AGCAA------CA---ACAACAGCAAC---A------ACAACAGC---------------------------------------------AAC----------AGC------------------------------AACAAT-------AGTAATA-------------TCAA---C-----TATGGC-------TGCA----------------------------------------------------------------------------------ACAACAAGCCGCAGCCCCGCCCACAATATGAGCTCAAAGTGCGT-GTTGGGCACCATGGCGTATGA----------------------GCAATGC--GAGC----TCTC---------------------------------------------------------------ATTCTGTGTGC----------------CAGTG--------T------------GTGT-------GTG-TGTGTGT---------------------------------------ATGAGT----	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................................................................................................AA------CA---ACAACAGCAAC---A------ACAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	2	0
..............................................................................................................................AACAACAGCAACAACAGC------AGCAA------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0
............................................................................................................................................CAGC------AGCAA------CA---ACAACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0

droWil2

CA-------------------------------------------------------------------------------------------GCAGC-------------AG------------CAACAGCAGCAACAACAACAATAACGTCGG------CA------------GC---A---ACGACAACGTTGTGAATTTTGATTCTGG-GTC-------------------------------------ATT----------CACCCTTG-------------AC----------A---AAA-------------AA----------AT-------ATTTGCGCT-----------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------TGTTAGGCCG-------------------------------------------------------------------------CCTTTGTATATGTATGTGTATGTG------------TATGTATGGATGT-----TTG-T---------------------------------------------TTGTGCT---	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................AG------------CAACAGCAGCAACAACAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	2	0
...............................................................................................................AG------------CAACAGCAGCAACAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
...............................................................................................................AG------------CAACAGCAGCAACAACAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
.............................................................................................................................CAACAGCAGCAACAACAACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
.................................................................................................C-------------AG------------CAACAGCAGCAACAACAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0

dp5

TTCGGCC--------------------------------------------------------------------------------GA----------AA---C------AACTACAA---------------CAACAACAACAGAAGCAGCAG------CA------------GC---A---GCAGCAGTAGC---------------------------------------------AGA----------------------G-------------AAACAGCAACA-------------A--------------------------------------------------------------------------------------GCAGACAACATGGATGAAAGAGCGAGCGCGAAGATCATCATATACTT-ACCGTAATC------------------------------------------------------------------------------------------------------------GTATCGTGAATGAATATC------------TT---------------------------------------------GTC----TATGT------------GTGAGAGGCGTGCTCT---------------------------------------------ACGTGT----	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................ACATGGATGAAAGAGCGAGCGCGAAG................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCGAAGATCATCAT........................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TC------------------------------------------------------------------------------------------------------------GTATCGTGAATGAATATC------------TT---------------------------------------------GTC----........................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................AACATGGATGAAAGAGCGAGCGCGAA.................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GTAGC---------------------------------------------AGA----------------------G-------------AAACAGCAACA-------------A--------------------------------------------------------------------------------------GCAGA............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................CAACA-------------A--------------------------------------------------------------------------------------GCAGACAACATGGATG.................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGAGGCGTGCTCT---------------------------------------------ACGT......	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................AGACAACATGGATGAAAGAGCGAGC......................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGAGCGAGCGCGAAGATC.............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGAAAGAGCGAGCGCGAAGATCA............................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATC------------TT---------------------------------------------GTC----TATGT------------GTGAGAGGC..............................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................A---------------CAACAACAACAGAAGCAGCAG------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................AG------CA------------GC---A---GCAGCAGTAGC---------------------------------------------AGA----------------------G-------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................CAA---------------CAACAACAACAGAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................CAACAACAGAAGCAGCAG------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................G------CA------------GC---A---GCAGCAGTAGC---------------------------------------------AGA----------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	0	0	0	0	0	1	0	0	0

droPer2

CGTTGTTTAA-------------------------------------------------------------------GCAGA-TGCAACAACAA----------C------AG---CAGCAA---AAACAA---CAACAAC---------AACAA------AAACAACA---GCAAT---A---G---CAGCAGC---------------------------------------------AGC----------AGC------------------------------AGTC-------AAA---TATTGAAAG-----C-TCAG---C-----CATGCCAT----------------------------------------------------------------------------------------CATGTATTAAATTGTACTC------------------------------------------------------------------------------------------------------------CCTCCGTAAATTCGCTTC------------TT------GGTGTTTGTG----------T------------------------TAGCGT------------GTGT-------GTG-C---------------------------------------------ATCTGTG---	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

CAAGCA--------------------------------------------------------AGTG-------------------CAACAACAG----------C------AGCAGC---AACAGCAA------CAACAGCAGC------AGCAACAACAACA---------GCAAC---A------GCACCAGC---------------------------------------------AGC-------AGCAGCAACAGC------------------------CCCA-------------GGA-------------CC-A---C-----CACTCCATCATCTCGCACAATCCGGGCCACTTGCACCACTCCGTGGTGGGTCAGAACGA-------------------------------------------------------------------------------------------------------------------------------------------TCTCAAGCTC-------------------------------------------------------------------------GGCCTGGGAATGGGCGTCGGCGTG------------GGAGTGGGCGTGG-----GCG-G---------------------------------------------TGGTATT---	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................GCAA------CAACAGCAGC------AGCAACAACAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG------------GGAGTGGGCGTGG-----GC..........................................................	18	5	0.20	1	0	0	0	0	0	1
......................................................................................AACAACAG----------C------AGCAGC---AACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	4	0	0	0	0
...............................................................................................................................................C------AGCAACAACAACA---------GCAAC---A------GC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.15	2	0	2	0	0	0	0
........................................................................................CAACAG----------C------AGCAGC---AACAGCAA------CA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	0	3
..........................................................................................ACAG----------C------AGCAGC---AACAGCAA------CA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	3
......................................................................................AACAACAG----------C------AGCAGC---AACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	1	0	0	2
.......................................................................................................................................AACAGCAGC------AGCAACAACAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
......................................................................................AACAACAG----------C------AGCAGC---AACAGCAA------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	2
..........................................................................................................................CAGCAA------CAACAGCAGC------AGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0
...........................................................................................CAG----------C------AGCAGC---AACAGCAA------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	2
.........................................................................................................................................CAGCAGC------AGCAACAACAACA---------GCAAC---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	10	0.10	1	0	1	0	0	0	0
........................................................................................................................AACAGCAA------CAACAGCAGC------AGCAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	12	0.08	1	0	0	0	0	0	1
............................................................................................................................................................................GCAAC---A------GCACCAGC---------------------------------------------AGC-------AGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	14	0.07	1	0	1	0	0	0	0
................................................................TG-------------------CAACAACAG----------C------AGCAGC---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	15	0.07	1	0	1	0	0	0	0
................................................................................................................GCAGC---AACAGCAA------CAACAGCAGC------AGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	16	0.06	1	0	1	0	0	0	0
.......................................................................................................................................AACAGCAGC------AGCAACAACAACA---------GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	16	0.06	1	0	1	0	0	0	0
...............................................................................................................................................................AACA---------GCAAC---A------GCACCAGC---------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	17	0.06	1	0	1	0	0	0	0
......................................................................................................................................CAACAGCAGC------AGCAACAACAACA---------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.................................................................G-------------------CAACAACAG----------C------AGCAGC---AAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
...............................................................................................................................A------CAACAGCAGC------AGCAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................AGCAA------CAACAGCAGC------AGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................ACAGCAGC------AGCAACAACAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.....................................................................................CAACAACAG----------C------AGCAGC---AACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
...............................................................................................................AGCAGC---AACAGCAA------CAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
......................................................................................AACAACAG----------C------AGCAGC---AACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
..................................................................................................................AGC---AACAGCAA------CAACAGCAGC------AGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................ACAGCAA------CAACAGCAGC------AGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.............................................................................................G----------C------AGCAGC---AACAGCAA------CAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................AGCAGC------AGCAACAACAACA---------GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
............................................................................................................................GCAA------CAACAGCAGC------AGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
.........................................................................................AACAG----------C------AGCAGC---AACAGCAA------CA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................GCAAC---A------GCACCAGC---------------------------------------------AGC-------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
......................................................................................AACAACAG----------C------AGCAGC---AACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
............................................................................................AG----------C------AGCAGC---AACAGCAA------CAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................GC------AGCAACAACAACA---------GCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................AA------CAACAGCAGC------AGCAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................GCAGC------AGCAACAACAACA---------GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1

droBip1

GAGGC---------------------------------------------------------------------------------AACAGCAG----CAC---C------AG------CAACAACAA------CAAAAAAAAC---AACAACAA------CA---AAA------AC---A---ACAACAAC------------------------------------------------AAC----------AAA------AAGA-------------------------------------A-C------TGCGAAGTAATAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAAATACC----AG------------------ACGG--------------------------ACGCGCTCTTTTGGCGCTGGGTGCATG----------------------------------T--G------------T------------GTGT-------GTG-TGATGTG--ATGGGTC-----------------GGCTCGTT---TTTTGTTTT---	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGG-CA---------------------A--GCTCA---------GG------CTCAC-AAAGAGTGGCCTAATTAGTGTCAAGTGTTGC----------CCCAACAACGACAACAAC---GA---CAG------CGACGACAGC---AACAGCAG------CA------------GC---AGCAGCAGCAACATC----------------------------------------------------------AGG------CACA------------------GCAGCAACT---TC-AATGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGTGTGTGGCAAAACTTT---TGATTTCTTTCGGTAAGGCGGGCCAGATTTTTACAGCC--AAGCGCC-----------CGA-GGCAAAAGC-------------------AACAAC---AA---CAACAACTTTAAT---------AACAACAA------TA------------AT---A---ACAACAAAAAC---------------------------------------------AGCGAGCGGCAAAAGT---------A-----------------AGTTACT-------------AAG-------------TCAAAATT--------GGC--------T-T----------------------------------------------------------------------------------ATAACGGGACGCACTTTCACTTA----------------------------------------------------AA----CGCAGCTGAAGTCGCT--GC----TCTCTTTCCG------------CTG------------------------TGTGTGTG----------------------------------T--GTGTG------TGT------------GTGT-------GTG-T---------------------------------------------GTGTGTG---	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGCAGC---------------------------------------------------------------------------------------------------------AG---T---TG---CAG------CAGCATCAGC---AGCAGCAG------CA------------GT---A---GCAGCAGCATCATAAGCCCTGAATCCGCCGGCGTCTGACCGCAAATTCGTAACATCAAC----------AAA-------------------------------------------AATGAAA-------------T---TAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAAA-GTT----GC--------CCAA------CCAGCCATGCATGT--------------------ATC------------TG------TGTGTGTGTG----------T------------------------AAGTGT------------GTGTGT-----GTG-T---------------------------------------------ATGTGTA---	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CA-------------------------------------------------------------------------------------------GCAGC-------------AG---C---AACACCAA------CAACAGCAACACCAACAGCAT------CA---------GCAAC---A------GCAGCAGC----------------------------------------------------------AGC------AGCATATCCATG-------------CC----------C---A-----------------------GCAGAT-------GTTGGCCCAAA------GTCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTAAC-----------------------------------------------------------TGCCGCTG------CTGC-AGC-------------------------GGCAAC---ATCAGCAT------CATCAGCAGC------AACAGCAGCAGCAGCAACAGCAGCAGC---A---G---CAGCAAC----------------------------------------------------------AAC---GGC------------------------CGCA-------------GAG-------------TGCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TACT------------------------------TGCAGCAGCCCA------CTCAAAC--GAGTGCC---------------------ACGAG----CAA---C------AACAGCAGCAA---CAACCACAGCAGCAGCAGC---AACAACAG------CA------------GC---A---GCAACAACATC----------------------------------------------------------AG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TACAGC-------------------------------------------------------------AGC-----------------GC----------------------AG---CAGCAA---CAACAACAACAACAGCAACAACAACACCAG------CA------------------------GCAAAAGC---------------------------------------------AAC----------AAA---------A---------------------GC--------------------------------------------------------------------------------------------------------------------------------------------------------GCAC---------------------------------------------------------TTCAAACGCC----GC------------------A--------------------------TGTTCGTATC------------CG------TGTCTTGCTG----------C------------------------CTCTGT------------GTGT-------GTG-TTTCTGTGT--TAAT-GAAAGAGAGAGGACATG-------CAGCT-GTAAATA---	Size	Hit Count	Total Norm	Total
No Reads

dm3

CA-------------------------------------------------------------------------------------------GCAGC-------------AA------------CAACAGCAGCAGCAGCAGCAGCAGCAGCAG------CA------------GT---A---GCAGCAACATC----------------------------------------------------------AAC------GGC---------------------GGCTACGCGTTC-A----AG-------------TG-A---A---------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------AGTC----------CGCAGC------TGCT--GC----CC-GCACTTCATGTACTTCGCACTG------------------------TGAGTGTG----------------------------------T--GTGTG----TGTGT------------GCGAGA-----GTG-T---------------------------------------------ATGTGT----	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTCGCACTG------------------------TGAGTGTG----------------------------------T--GTGTG----........................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----TGTGT------------GCGAGA-----GTG-T---------------------------------------------AT........	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................CAGC-------------AA------------CAACAGCAGCAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.65	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	6	0	0	0
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..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG----------------------------------T--GTGTG----TGTGT------------GCGA...................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................CAGC-------------AA------------CAACAGCAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................AA------------CAACAGCAGCAGCAGCAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------TGAGTGTG----------------------------------T--GTGTG----TGTGT------------G......................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CAGCAGCAGCAGCAGCAGCAGCAG------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGC------------------------------------------------------------------------------------------------AA---C------AA------------CAACAA---CAACAACAAC---AAAGGCAT------CA------------GTGGCA------GCAGCAGC----------------------------------------------------------AGC------A---------TTTAGTGGAATGGTGGGG-------------G--------------------------------------------------------------------------------------GCGAGGGAAGTGGAA-AGAGGGAGGGTGTGGAG---------------------------------AGGCGGGCGGGTAGTGGGTCGCTGGGCGTTGTGGCGTTCGAC----GTCGAAGGCC----------------TG------GCTG--------------------------CC-----------------------------------AGTC------------TGTACGTGT----GTG--------TATGTATGAGTGTGTGT-------GGG-C---------------------------------------------CGTTCCT---	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAGGGTGTGGAG---------------------------------AGGCG..........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTGTGGAG---------------------------------AGGCGG.........................................................................................................................................................................................................................................................................	18	2	1.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0

droSec2

CACCAC----------------------------------------------------T-------------AAGGTGCGGC-------GACAG----CAA---C------AACAGCAGCAC---CAACAA------C---AGC---AACAGCAG------CAGCAACA---GCAGC---A---G---CAGCAGC---------------------------------------------AAC----------AGC------------------------------AGCA-------------GAA-------------TA-A---C---------------------------------------------------------------------AACGCT-----------------------------------------------------------------------------------------------------------GTC----GC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....AC----------------------------------------------------T-------------AAGGTGCGGC-------GACAG----CAA---C------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
..............................................................................................................................................................................AGC---A---G---CAGCAGC---------------------------------------------AAC----------AGC------------------------------AGCA-------------GA......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	1
..............................................................................................................................................................................AGC---A---G---CAGCAGC---------------------------------------------AAC----------AGC------------------------------AGCA-------------GAA-------------........................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0
....................................................................................................................................................................CAACA---GCAGC---A---G---CAGCAGC---------------------------------------------AAC----------AGC------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0
.........................................................................................................................................................AG------CAGCAACA---GCAGC---A---G---CAGCAGC---------------------------------------------AAC----------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0
..............................................................................................................................AACAA------C---AGC---AACAGCAG------CAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1

droYak3

CGTTGGGTGGGGGATTTT-CGTAAGCTT--CCGCT---------TA------TGTAT-A---------------------AA--ACTTTTTCGGCAGC-CC---C------AG---CAGTAA---CAACTACAACAAGAACAACAACAACAGCAA------CA---------ACAAT---A------AGAAGAAG----------------------------------------------------------------------A-------------ATACAACAACTATG---GC-A---ATA-------------TG-A---G---------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------TGGC----------TGCTGC------T--------------------G------------CAG------------------------TGGGTGGG----------------------------------T--GGGGG------TGT----------T-GAGT-------GGG-C--------------------------------GG-----------CTGGGTGCTT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................AAGCTT--CCGCT---------TA------TGTAT-A---------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................AGCAA------CA---------ACAAT---A------AGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................G---------------------------------------------------------------------A-----------------------------------------------------------------------------------------------------TGGC----------TGCTGC------T--------------------G------------CAG------------------------TGGGTG........................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GTCGCC----------------------------------------------------T-------------TCTGTGCAGA-AGC-ACAG-------------C------AGCAGCAGCAA---CAACAA------CAGCAGCAGCAACAGCAA------CA---------GCAGC---A---G---CAGCAGC---------------------------------------------AAC----------AGC------------------------------AACA-------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................ACAGCAA------CA---------GCAGC---A---G---CAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	1	0	0	1	1	0
........................................................................................................................AA---CAACAA------CAGCAGCAGCAACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0
..................................................................................................................................................CAACAGCAA------CA---------GCAGC---A---G---CAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0
.............................................................................................................................................AGCAGCAACAGCAA------CA---------GCAGC---A---G---CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0	0
................................................................................................................GCAGCAGCAA---CAACAA------CAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0	0
...................................................................................................................................................AACAGCAA------CA---------GCAGC---A---G---CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0
.......................................................................................................................CAA---CAACAA------CAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0
...................................................................................................................................................AACAGCAA------CA---------GCAGC---A---G---CAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0
......................................................................................................................................................AGCAA------CA---------GCAGC---A---G---CAGCAGC---------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0
....................................................................................................................................................ACAGCAA------CA---------GCAGC---A---G---CAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0

dmo_2311

scaffold_6680:2100630-2100780 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-29.17	-29.07	-28.77