ID:

dmo_2297

 Coordinate:

scaffold_6680:1543117-1543267 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.7 -36.7 -36.7

Flybase annnotation

exon [dmoj_GLEANR_12731:2]; CDS [Dmoj\GI12749-cds]; intron [Dmoj\GI12749-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_3956:2566-2590 +
  2. scaffold_6308:1203623-1203647 +
  3. scaffold_6328:747812-747836 +
  4. scaffold_6359:3223442-3223466 +
  5. scaffold_6473:4310966-4310990 +
  6. scaffold_6473:7304805-7304829 +
  7. scaffold_6496:19269249-19269273 +
  8. scaffold_6500:509100-509124 +
  9. scaffold_6500:25990552-25990576 +
  10. scaffold_6500:26685658-26685682 +
  11. scaffold_6540:14163972-14163996 +
  12. scaffold_6540:14201892-14201916 +
  13. scaffold_6540:31735968-31735992 +
  14. dmo_2297  scaffold_6680:1543175-1543199 +
  15. scaffold_6680:1709075-1709099 +
  16. scaffold_6680:3791639-3791663 +
  17. scaffold_6680:4872094-4872118 +
  18. scaffold_6680:6701296-6701320 +
  19. scaffold_6680:14350448-14350472 +
  20. scaffold_6680:20632497-20632521 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAACAACTGCAACGCTGGCCACGCATATTACGCCAGATAGTTTGCATTATGAAGATGTGCTGCCGCCTGTGCATCAAATATTTGACAATAGTCGCCGCAGCAGCAACAGCAGCAACAGCAGCAGCAACAGCAACAGCAACAGCAACAACAACACTGATGCTTGCCAAGTAGCTGAAATTTTGCCAAACTCAACAACTGCTGCTGCAGCTCCTGATGGCTCCAAATTATTATTGTCGGCGTCAAGTCCGAGC
**************************************************.....((((((((.((((((...((((....))))..))))..)).)))))).)).((((((...........((((((((.((.(((..((((.((.......)).)))))))...)).)))).....))))............))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 M060
embryo
......................................................AGGTGCGGCCGCCTGTGCATC................................................................................................................................................................................ 21 2 2 0.50 1 1 0 0
..........................................................................................................................................................................................................................TCCAAATTATTACTATCGTC............. 20 3 9 0.22 2 1 1 0
..........................................TGTATTTTGAAGATGTGCT.............................................................................................................................................................................................. 19 2 9 0.11 1 0 1 0
............................................................................................................GCAGCAACAGCAGCAGCAACAGCAA...................................................................................................................... 25 0 20 0.05 1 1 0 0
....................................................................................................CAGCAACAGCAGCAACAGCAG.................................................................................................................................. 21 0 20 0.05 1 0 0 1
....................................................................................................CAGCAACAGCAGCAACAGCAGC................................................................................................................................. 22 0 20 0.05 1 1 0 0
............................................................................................................GCAGCAACAGCAGCAGCA............................................................................................................................. 18 0 20 0.05 1 0 0 1
........................................................................................................AACAGCAGCAACAGCAGCAGCAAC........................................................................................................................... 24 0 20 0.05 1 0 0 1

Anti-sense strand reads

GTTGTTGACGTTGCGACCGGTGCGTATAATGCGGTCTATCAAACGTAATACTTCTACACGACGGCGGACACGTAGTTTATAAACTGTTATCAGCGGCGTCGTCGTTGTCGTCGTTGTCGTCGTCGTTGTCGTTGTCGTTGTCGTTGTTGTTGTGACTACGAACGGTTCATCGACTTTAAAACGGTTTGAGTTGTTGACGACGACGTCGAGGACTACCGAGGTTTAATAATAACAGCCGCAGTTCAGGCTCG
**************************************************.....((((((((.((((((...((((....))))..))))..)).)))))).)).((((((...........((((((((.((.(((..((((.((.......)).)))))))...)).)))).....))))............))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V049
head
 V056
head
..........................................................................................................................................................................................................................AGGTTTAATAATGATAGCAG............. 20 3 9 1.00 9 7 0 2 0 0
.................................................................................................................................................GTGGTTTTGACTACGACCGGTTCA.................................................................................. 24 3 1 1.00 1 0 1 0 0 0
....................................................................................................................................................GTTTTGACTACGACCGGGTC................................................................................... 20 3 14 0.21 3 3 0 0 0 0
..........................................................................................................................................................................................................................AGGTTTAATAATGATAGC............... 18 2 8 0.13 1 1 0 0 0 0
.............................................................................................................................................................................................................TCGAGGACAATCGAGGTTA........................... 19 3 20 0.05 1 0 0 0 0 1
.................................................................................................................................................GTGGTTTTGACTACGACCG....................................................................................... 19 3 20 0.05 1 0 1 0 0 0
..................................................................................................................................................TGGTTTTGACTACGACCGG...................................................................................... 19 3 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6680:1543067-1543317 + dmo_2297 CAAC---AAC-TG--CAACGCT----------------------GGCCACGCATATTACGCCAGATA-----------------------------------------------------------------------------------GTTTGCATTATGAA---------------------------------GATGTGCTGCCGCCT-GTGC--ATCAA-ATAT-------TTGACAATAGTCGC------------------------------C------G---CAGC------------------AGC---------------------AACAGCAGC------AACAGCAGC---------AGCAACAGCAA---------------CA---------GCAACAGCAACAACA---ACA---------------------------------------------------------CTGATGCTTGCCAAGTAGCTGAAATTTTGCCAA----------------------------------A-CTCAACAACTGCTG-----------CT---------------------------GCAGCTCC--------------------------TGA---------------TGG-------------------------------------C-T-CC------------AAATTAT--T---ATTGTCGGCGTC--AAGTCCGAGC
droVir3 scaffold_12758:443884-444095 + CAAC---TGC-AG-----CGCT----------------------GGCCACGCACATTACGCCGGATAGTTTGCAT----TATG----------------------------------------------------------------------------------------------------------------AAGATGTGCTGCCGCCT-GTGC--ATCAA-ATAT-------T------------T------------------------------G------G---CAAT------------------AGTTG---------------------T---------------------------------------AG---------------CAACA------GC---AACAGCAGCAGCAGCGAGT------------------C-------G---------------A-----------CTGATGCTAGCCAAGTAGCTGAAATTTTGCCAA------------------A-----------------CTCAACAAATGC--------------T--------------------CCT----GC--------------------------------------------------TGG-------------------------------------C-G-CC------------AAATTAT--T---ATTGTCGGCGTC--GAGTCCGAGG
droGri2 scaffold_15110:999664-999884 - CAAC---AGC-AG--CAACAACTACCAGCAAAACAA-CGTTGCTCTCCACGCATATTACGCCAGATAGTTTGCAT----TATG----------------------------------------------------------------------------------------------------------------AAGATGTGCAGCCGCCT-GTGC--ATCAA-ATAT-------T------------T------------------------------G------A---CAAT------------------AGT------------------------------------------------------------------------------------------------TGTAGCAGCAATAGCAACC-------------------------AG---------------A-----------CTGATGCTGACCAAGTATCTGAAATTTTGCC--------------------------------------------AAACTCAACGACTGC-----T---------------------------GCT--------------------------------------------------GG-------------------------------------C-T-CC------------AAATTAT--T---ATTGTCGGCGTC--GAGTCCGAAC
droWil2 scf2_1100000004921:3543578-3543839 - CAGC---AAC-AA--CACCAGC----------------------AGCAACATCTCTTGGAGCAGC-----------------------------------------------------------------------AACAT---------TTGC--------------------------------AATATC---------------------------AACATCAGCAGCAATAT-------------GCATTGCCCCATCAGCAACAAGTGGCCGGGCA------T---CAGC------------------AGC---------------------AACCAC---------AGCAACAGC---------AACAGC---AG---------------CA---------ACAACAGCAGCAGCA---GCAACG-----------------------------------------------------------------------------------------------------------------------AGTTGTCAGCGATTTTGCAGAGAGTTTTA------------------------------------------------------------AGAGTGTTAATGCTGCTGCGG------CAG---CTGCTG----CTG-TTGC-----TGCCAC-A-CC------------ACATTATACT---AGCGTCATTGTG--GAGCCGCAAC
dp5 4_group4:6348617-6348826 - CAAC---AAC-CC--GGCCTCC----------------------AACGACTTCAAGTACGCCAGCTCCC------TGACTATGATGCTGCAG----------------------------------CAGCAGC-----------------------------------------------------------AGC--------------------AA--CTCGA-C-------TCC-------------C------------------------------A------G---CAGC------------------AGCAA---------------------CAGCAGCAACAACAGCAACAAC---------------AGCAA---------CAACAACA---------ACAACAGCAGCAGCAACAGCAAC--------TTCTG-----------------------------------------------------------------------CC-C------------------ACCCAGCCCATG-------------------------------TC---------------------------GCAGCTCTC----------------------------------------------------------------------------------------C-----------AAGATCGT--G---CTTGCCGCCGCC----GCCCAGGC
droPer2 scaffold_16:543880-544086 + CAAC---AAC-CC--GGCCTCC----------------------AACGACTTCAAGTACGCCAGCTCCC------TGACTATGATGCTGCAG----------------------------------CAGCAGC-----------------------------------------------------------AGC--------------------AA--CTCGA-C-------TCC-------------C------------------------------A------G---CAGC------------------AGCAG---------------------CAGCAGCAACAGCAGCAACAAC---------------AGCAA---------CAA---CA---------ACAACAACAACAACAACAGCAAC--------TTCTG-----------------------------------------------------------------------CC-C------------------ACACAGCCCATG-------------------------------TC---------------------------GCAGCTCTC----------------------------------------------------------------------------------------C-----------AAGATCGT--G---CTTGCCGCCGCC----GCCCAGGC
droAna3 scaffold_12943:4150895-4151107 + CAGC---AAC-AG-----CAACCCC-------------------AA---------GC----------------------------------------------------CC----------------------------------------------CGCAACAGGTTGTGCCACCAGT-------------GGC--------------------GG--CTCAA-C---------------AGCAACCTC------------------------------C---GCAACAACAGC------------------AGC---------------------AACAGC---------AACAACAGC---------AGCAGCAGCAA---------------CA---------ACACCAACAGCAGCAACAGCAATCGCTTAAC----------G-------------------------ATCAGCT-------------GCAACACTCC--------------------------------------------------ATCAACGACATTG------------TCGGG---------------------------GG--------------------------AGGCAACAGCTCCGGATCAAC------CA-------------------------------------------------------------------CCAGC------AGCCAGAGC
droBip1 scf7180000396395:200602-200876 - CAAC---AAC-CG--CGCCAAGAGCCAGCAGAACTTCCA------------------------------------------------------------------------------------------------------GC--ACACACTGCGCATGCAGCACATGATGGCCCCGTCGATGCCCAACATCAGCAAC-----------------------------ATGTACCAC-------------C------------------------------A------G---CAGC------------------AGCAGCAGC---------------AACAAC------AGCAGCAGCAGCAGCCACAGTTGCCCCTGCAA---------------CA---------GCAGCAGCAGCACCAGCAGCAAC--------------------------------------------------------------------------------------------CCCTGATGAGCAGCAGCCAGAGCATGCAGAATGTGAACGAGTTCGGAGGAGGC----------------------------------------------------------------------------------------TATCAGAAC-----GGTGGCCTGGAGTA--------CC-G--------------------------ACGCAGCCAGCTCC--AT----GAAC
droKik1 scf7180000302634:689973-690245 - TAAC---AAT-CG--CACCAAGAGCCAGCAGAATTTCCA------------------------------------------------------------------------------------------------------GC--ATACCCTGCGCATGCAGCAGATGATGGCGCCATCAATGCCCAACATCAGCAAC-----------------------------ATGTACCAG-------------C------------------------------A------A---CAGC------------------AGCAACAACACC------------AACAGC---------AGCAGCAAC---------TCCCCCTGCAC---------------CA---------GCAACAGCAGC---AGCAGCAACCA-----------------------------------------------------------------------------------------CCTGTTATGAGCAGCAGCCAGAGCATGCAGAACGTCAACGATTTCACGGGTGG-----------------------------------CAGC--------------------------------------------------TATCAGAAT-----GGAGGCTTGGAGTA--------CC-G--------------------------ACGCAGCCAGCTCC--ATGACCCAGC
droFic1 scf7180000453927:1368204-1368449 + CACT---ACG-TG----CCACC----------------------GGCG-----AAGCACGCCAGCGAGCATGCAA----CCGC----------------------------------------------------------------------------------------------------------------AACAGGAGCCC-------------------------------------------C------------------------------A---GCAACAGCAACAGCAACAGCAGCAGCAGCAGC---------------------AGCAAC---------AGCAACATC---------AACCGAAGCAA---------------CA---------GCAACAGCAACAGTGATAGCAAC--------TGCAG-------------------CTGACA-------------------------C-TGTGGCAACAGCAACCTTGACGG-------------------------------------------------------------------------------------------------------------------------CGACAACAGGTGCAGCTGCAA------CTG---CAGCAG----CGG-AGGT-----GACAACAAGCAT----------------T--------AAAACAACAGC--AACACCGACA
droEle1 scf7180000491104:2396316-2396524 - CAGC---AAC-AA-----CAACACT-------------------CC---------TC----------------------------------------------------ACT-GCGA-------------------------------CGCAGTTCACGTGGCAA--------------------------------GACGGGTTCTTGTGT-GAGTTCGGCAGCAGCAGC-----A------------C------------------------------A------G---CAGC------------------AGCAG---------------------C---------------------------------------AG---------------CAACA------CC---ACCAGCAGCAACAGCAACATAGCAAC----------GCTG----------CTGCT---------------------------GCTGTACAACAGCAATTGCTGCCACCGCCT---------------------------------------------GGTACC----------------------------------------------------------------------------------------TATCAATACCAACAGGTGGGCGGCAATA--------CC-G--------------------------T-------------------TGTAGT
droRho1 scf7180000779573:36181-36435 + CAAT---CGC-AC-----CAAGAGCCAGCAGAACTTCCA------------------------------------------------------------------------------------------------------GC--ACACCCTGCGAATGCAGCAGATGATGGCTCCATCGATGCCCAATATCAGCAAC-----------------------------ATGTACCAC-------------C------------------------------A------C---CAGC------------------AGC---------------------AACAAC---------AGCAACAGC---------TGCCTCTGCAG---------------CA---------GCA---GCAACCACAGCAGCAAC--------------------------------------------------------------------------------------------CCGTTATGAGCAGCAGCCAGAGCATGCAAAATGTCAACGATTTTACAGGTGGC----------------------------------------------------------------------------------------TATCAGAAT-----GGCAGCCTGGAGTA--------TA-G--------------------------ACGCAGTCAGCTCC--ATGACCCAAC
droBia1 scf7180000302126:1332099-1332354 - CACT---TGC-AG-----CAAATG---------------------GACGCGC--AGTACACCAC----------------------------------------------CATGCC-------------------------GC--GTCCCCTGC--------------------------------ATCATCCG-CAGCTGGGCAGCTACTCGGTGC--ACCTGCAGAAGCACCAG-------------C------------------------------A------G---CTGC------------------AGC---------------------AGCAAC---------AGCAACAGA---------TGCAGCAGCAG------------CAACA---------GCAGCAGCAG------CAGCAAC--------AGCAGGCTACCCAGCA------------------------------AC-TTAGCCTGGGCTACTTCAGCAATGG-------------------------------CAATG-------------------------------TGGCGGCCACCGAGCAAGTGCCTCT----GC--------------------------------------------------CCT-------------------------------------C-G-C--------------------------CCTACCAGCG-A--GTGCCCCTGC
droTak1 scf7180000415789:729134-729391 - CTTGAACAAT-CG--CACCAAGAGCCAGCAGAATTTTCA------------------------------------------------------------------------------------------------------GC--ACACTCTGCGCATGCAGCAGATGATGGCCCCATCGATGCCCAACATCAGCAAC-----------------------------ATGTACCAC-------------C------------------------------A------C---CAGC------------------AGC---------------------AGCAAC---------AACAACAGC---------TGCCCCTGCAA---------------CA---------GC---AGCAGCAACAGCAGCAAC--------------------------------------------------------------------------------------------CTCTCATGAGCAGCAGTCAGAGCATGCAGAATGTCAACGATTTCACGGGTGGC----------------------------------------------------------------------------------------TTCCAGAAT-----GGCAGTCTGGAGTA--------CA-G--------------------------AC---GTCAGCTCC--ATGATCCAGC
droEug1 scf7180000409110:876561-876840 + CAAT---AAC-TA--CTATGCT----------------------GGAC-----------AACAG----------------------------------------------CA-GCAACATCCTATGCAGCAGC---AGCAA---------CTGC--------------------------------CACCGC---------------------------AGCATCAGCAGCAACAG-------------CAACTGCCACC--------------------G----------CAGC------------------AGC---------------------AGCAGC---------AACAGCAAC---------TGCCACCGCAG---------------CA---------GC------AG------CAGCAAC--------AGCAGCCCACGCAGCA---------------------------------GCAGCATACAATGCAGCAGCAATTGTATTAT----------------------------------------------------CCCAC----------TCACC----AGCAGCCACAAGTCCCGGCTCCACCGGAACCCGCTCTGGACTCGT-----T------T--------GACAACAAT---------------AATAGTA--------TT-G--------------------------GAGGAGTTAGT------GGCCGGAGC
dm3 chr2R:16892671-16892920 + CAGC---AGC-TT-----CAGCAGC-------------------AG-----------------------------------------------------------------------------------CATCAGCAACCATCGCATTCCCCACAG--------------------------------CATC---AGC-----------------------------ATGC--------------------GAGACTGCAGTCGCCACAAC-----CTGCTCCAGT-A---CAAC---------------------------------------------AAC---------AACAGCAGC---------AG---CAGCAG---------------CA---------ACAACAGCAGCAGCAGCAGCAGT--------------TCCTGCAGCAACAGGCTGCCGACA-------------------------CGTGGGGCAACATGAACTTTGGCAA----------------------------------------------------TCCAC--------------------------------------------------------------------------------CGAAC------AAT---CAGCAG----GTT-GAGCTCAAGGATAACAAATTC----------------TA--T---ATTGT-GGAAT----CGGCCGAGT
droSim2 2l:12309485-12309714 + CAAC---AAC-AC-----TTG---------------------------------------------------------------------------------------------------------------------------------------------------------CCAACAATTCCCATCATCAACACT-------------T-GAGCACAACAG-------------------------------------------------------------------CAGC------------------AGC---------------------AACAGC---------AACTGCAGC---------AGCAACTGCAGCAGCAGCAGCAGCAACA---------GCAACTGCAGCAGCAACAGCAACC-------------------------ATGTTGCTGACTTCACC-GACAGCAGCAA-------------CTCA---------TTGCC----------------------------------------------------TGGCTGC--------------------------------------------------------------------------------TGCAA------CAT---CGGCAG----CAG-GTGT-----T--AATGT-TC------------AAATTAC--TGGCCAAGGCGTTTCAACCACTCTGAAC
droSec2 scaffold_6:1124452-1124709 - CAAC---CGC-AC-----CAAGAGCCAGCAGAACTTCCA------------------------------------------------------------------------------------------------------GC--ACACTCTTCGTATGCAGCAGATGATGGCTCCCTCCATGCCCAACATCAGCAAT-----------------------------ATGTACCAT-------------C------------------------------A------C---CAGC------------------AGC---------------------AACAAC---------AGCAACAGC---------TGCCCCTGCAG---------------CA---------ACAGCAGCAGCAGCAACAGCAAC--------------------------------------------------------------------------------------------CTCTGATGAGCAGCAGTCAGAGCATGCAGAATGTTAACGATTTTACAGGTGGC----------------------------------------------------------------------------------------TATCAGAAT-----GGCAATCTGGAGTA--------CA-G--------------------------GCGCAGTCAGCTCC--ATGATCCATC
droYak3 2L:2082062-2082299 - CATC---GAATCGCGTAGCCCA----------------------GGCCATGC--------------TGC------TGATGTCGACGTCGCAGCAGCAGCAGCAGCAGTGGCA-GCAACATCAGTGGCAGCAAC---AGCAA---------CTGC--------------------------------AGCAGC---------------------------AGCAACAGCAGCAG----------------------------------------------------------------------------------------CAACAACAGCAGCAGCAACAGC---------AGCAA------------------CAGCAG---------------CAACAGCAGCAGCA---GC------AGCAGCAAC----------------------------------------------------------------------------------------------------AGCAGCAGCAACAACAAGGGCAGCGGCGACGA-----------------------------------------------------------------------------------------------------------------------------------------CG-CGCGCAGTTATTATAATA---------A------TGGC--------GTTAGTT
droEre2 scaffold_4770:1276149-1276397 - CAAC---CGC-AC-----CAAGAGCCAGCAGAATTTCCA------------------------------------------------------------------------------------------------------GC--ACACTCTTCGCATGCAGCAGATGATGGCTCCATCTATGCCGAACATCAGCAAC-----------------------------ATGTTCCAT-------------C------------------------------A------C---CAGC------------------AGC---------------------AACAAC---------AGCCACAGC---------TGCCCCTGCAG---------------CA---------ACA---GC------AGCAGCAAC--------------------------------------------------------------------------------------------CGCTAATGAGCAGCAGTCAGAGCATGCAGAATGTCAACGATTTCACAGGTGGC----------------------------------------------------------------------------------------TATCCGAAT-----GGTAGTCTGGAGTA--------CA-G--------------------------GCGCAGTCAGCTCC--ACGATCCATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CAAC---AAC-TG--CAACGCT----------------------GGCCACGCATATTACGCCAGATA-----------------------------------------------------------------------------------GTTTGCATTATGAA---------------------------------GATGTGCTGCCGCCT-GTGC--ATCAA-ATAT-------TTGACAATAGTCGC------------------------------C------G---CAGC------------------AGC---------------------AACAGCAGC------AACAGCAGC---------AGCAACAGCAA---------------CA---------GCAACAGCAACAACA---ACA---------------------------------------------------------CTGATGCTTGCCAAGTAGCTGAAATTTTGCCAA----------------------------------A-CTCAACAACTGCTG-----------CT---------------------------GCAGCTCC--------------------------TGA---------------TGG-------------------------------------C-T-CC------------AAATTAT--T---ATTGTCGGCGTC--AAGTCCGAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................GCAGC------AACAGCAGC---------AGCAACAGCAA---------------.......................................................................................................................................................................................................................................................................................................................................................................25200.051100000
......................................................................................................................................................................................................................................................................................................C------------------AGC---------------------AACAGCAGC------AACAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
......................................................................................................................................................................................................................................................................................................C------------------AGC---------------------AACAGCAGC------AACAGCAGC---------.................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
.....................................................................................................................................................................................................................................................................................................................................................GCAGC------AACAGCAGC---------AGCA.............................................................................................................................................................................................................................................................................................................................................................................................18200.051000010
.................................................................................................................................................................................................................................................................................................................................................AACAGCAGC------AACAGCAGC---------AGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
droVir3
CAAC---TGC-AG-----CGCT----------------------GGCCACGCACATTACGCCGGATAGTTTGCAT----TATG----------------------------------------------------------------------------------------------------------------AAGATGTGCTGCCGCCT-GTGC--ATCAA-ATAT-------T------------T------------------------------G------G---CAAT------------------AGTTG---------------------T---------------------------------------AG---------------CAACA------GC---AACAGCAGCAGCAGCGAGT------------------C-------G---------------A-----------CTGATGCTAGCCAAGTAGCTGAAATTTTGCCAA------------------A-----------------CTCAACAAATGC--------------T--------------------CCT----GC--------------------------------------------------TGG-------------------------------------C-G-CC------------AAATTAT--T---ATTGTCGGCGTC--GAGTCCGAGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAT--T---ATTGTCGGCGTC--GA........2011.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................G---------------------T---------------------------------------AG---------------CAACA------GC---AACAGCAGCAG............................................................................................................................................................................................................................................................................................................................................2260.171001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................T---------------------------------------AG---------------CAACA------GC---AACAGCAGCAG............................................................................................................................................................................................................................................................................................................................................21100.101000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................AACA------GC---AACAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................18200.051000000000100000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................G---------------CAACA------GC---AACAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................21200.051000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AG---------------CAACA------GC---AACAGCAGCA.............................................................................................................................................................................................................................................................................................................................................19200.051000000000000000010000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AG---------------CAACA------GC---AACAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000010000000000000000000000000000
droGri2
CAAC---AGC-AG--CAACAACTACCAGCAAAACAA-CGTTGCTCTCCACGCATATTACGCCAGATAGTTTGCAT----TATG----------------------------------------------------------------------------------------------------------------AAGATGTGCAGCCGCCT-GTGC--ATCAA-ATAT-------T------------T------------------------------G------A---CAAT------------------AGT------------------------------------------------------------------------------------------------TGTAGCAGCAATAGCAACC-------------------------AG---------------A-----------CTGATGCTGACCAAGTATCTGAAATTTTGCC--------------------------------------------AAACTCAACGACTGC-----T---------------------------GCT--------------------------------------------------GG-------------------------------------C-T-CC------------AAATTAT--T---ATTGTCGGCGTC--GAGTCCGAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CAGC---AAC-AA--CACCAGC----------------------AGCAACATCTCTTGGAGCAGC-----------------------------------------------------------------------AACAT---------TTGC--------------------------------AATATC---------------------------AACATCAGCAGCAATAT-------------GCATTGCCCCATCAGCAACAAGTGGCCGGGCA------T---CAGC------------------AGC---------------------AACCAC---------AGCAACAGC---------AACAGC---AG---------------CA---------ACAACAGCAGCAGCA---GCAACG-----------------------------------------------------------------------------------------------------------------------AGTTGTCAGCGATTTTGCAGAGAGTTTTA------------------------------------------------------------AGAGTGTTAATGCTGCTGCGG------CAG---CTGCTG----CTG-TTGC-----TGCCAC-A-CC------------ACATTATACT---AGCGTCATTGTG--GAGCCGCAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................A---------ACAACAGCAGCAGCA---GCAACG-----------------------------------------------------------------------------------------------------------------------.............................................................................................................................................................................................................2240.25100001
.......................................................................................................................................................................................................................................................................................................................................................................................C---AG---------------CA---------ACAACAGCAGCAGCA---GC........................................................................................................................................................................................................................................................................................................................................22200.10200020
............................................................................................................................................................................................................................................................................................................................................................................................G---------------CA---------ACAACAGCAGCAGCA---GC........................................................................................................................................................................................................................................................................................................................................20200.05100010
........................................................................................................................................................................................................................................................................................................................................................................C---------AACAGC---AG---------------CA---------ACAACAGC....................................................................................................................................................................................................................................................................................................................................................19200.05100010
dp5
CAAC---AAC-CC--GGCCTCC----------------------AACGACTTCAAGTACGCCAGCTCCC------TGACTATGATGCTGCAG----------------------------------CAGCAGC-----------------------------------------------------------AGC--------------------AA--CTCGA-C-------TCC-------------C------------------------------A------G---CAGC------------------AGCAA---------------------CAGCAGCAACAACAGCAACAAC---------------AGCAA---------CAACAACA---------ACAACAGCAGCAGCAACAGCAAC--------TTCTG-----------------------------------------------------------------------CC-C------------------ACCCAGCCCATG-------------------------------TC---------------------------GCAGCTCTC----------------------------------------------------------------------------------------C-----------AAGATCGT--G---CTTGCCGCCGCC----GCCCAGGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................CAGC-----------------------------------------------------------AGC--------------------AA--CTCGA-C-------TCC-------------C------------------------------A------G---CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
..............................................................................................................................CAGCAGC-----------------------------------------------------------AGC--------------------AA--CTCGA-C-------TCC-------------C------------------------------A------G---CAGC------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
..................................................................................................................................AGC-----------------------------------------------------------AGC--------------------AA--CTCGA-C-------TCC-------------C------------------------------A------G---CAGC------------------AGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................AACAAC---------------AGCAA---------CAACAACA---------ACA.........................................................................................................................................................................................................................................................................................................................................................22200.70140085001000
..................................................................................................................................................................................................................................................................................................................................................................CAACAAC---------------AGCAA---------CAACAACA---------............................................................................................................................................................................................................................................................................................................................................................20200.3570700000000
...................................................................................................................................................................................................................................................................................................................................................................AACAAC---------------AGCAA---------CAACAACA---------AC..........................................................................................................................................................................................................................................................................................................................................................21200.3060006000000
..................................................................................................................................................................................................................................................................................................................................................................CAACAAC---------------AGCAA---------CAACAACA---------A...........................................................................................................................................................................................................................................................................................................................................................21200.2550500000000
.......................................................................................................................................................................................................................................................................................................................................................................AC---------------AGCAA---------CAACAACA---------ACAACAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................2950.2010010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AACAACA---------ACAACAGCAGCAGCAACAGC........................................................................................................................................................................................................................................................................................................................................2750.2010100000000
....................................................................................................................................................................................................................................................................................................................................................................ACAAC---------------AGCAA---------CAACAACA---------AC..........................................................................................................................................................................................................................................................................................................................................................20200.1530300000000
......................................................................................................................................................................................................................................................................................................................................................................AAC---------------AGCAA---------CAACAACA---------ACAACAGCA...................................................................................................................................................................................................................................................................................................................................................25140.0710010000000
.......................................................................................................................................................................................................................................................................................................................................................................AC---------------AGCAA---------CAACAACA---------ACAACAGCA...................................................................................................................................................................................................................................................................................................................................................24150.0710100000000
.........................................................................................................................................................................................................................................................................................................................................................................................GCAA---------CAACAACA---------ACAACA......................................................................................................................................................................................................................................................................................................................................................18200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................................AACAACAGCAACAAC---------------AGCA.......................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
...............................................................................................................................................................................................................................................................................................G---CAGC------------------AGCAA---------------------CAGCAGCAAC......................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000010000
...........................................................................................................................................................................................................................................................................................................................CAA---------------------CAGCAGCAACAACAGCAAC.............................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100000
......................................................................................................................................................................................................................................................................................................................................................................AAC---------------AGCAA---------CAACAACA---------ACAAC.......................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAGCAACAAC---------------AG.........................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................CAACAAC---------------AGCAA---------CAACAACA---------ACA.........................................................................................................................................................................................................................................................................................................................................................23200.0510001000000
droPer2
CAAC---AAC-CC--GGCCTCC----------------------AACGACTTCAAGTACGCCAGCTCCC------TGACTATGATGCTGCAG----------------------------------CAGCAGC-----------------------------------------------------------AGC--------------------AA--CTCGA-C-------TCC-------------C------------------------------A------G---CAGC------------------AGCAG---------------------CAGCAGCAACAGCAGCAACAAC---------------AGCAA---------CAA---CA---------ACAACAACAACAACAACAGCAAC--------TTCTG-----------------------------------------------------------------------CC-C------------------ACACAGCCCATG-------------------------------TC---------------------------GCAGCTCTC----------------------------------------------------------------------------------------C-----------AAGATCGT--G---CTTGCCGCCGCC----GCCCAGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................C-----------------------------------------------------------AGC--------------------AA--CTCGA-C-------TCC-------------C------------------------------A------G---CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAAC--------TTCTG-----------------------------------------------------------------------CC-C------------------ACAC.......................................................................................................................................................................................................................2311.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC----------------------------------------------------------------------------------------C-----------AAGATCGT--G---CTTGCC..................1911.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------ACACAGCCCATG-------------------------------TC---------------------------GCAGCTCTC----------------------------------------------------------------------------------------C-----------......................................2511.001010000
.................................................................................................................................................................................................................................C-------TCC-------------C------------------------------A------G---CAGC------------------AGCAG---------------------CAGC............................................................................................................................................................................................................................................................................................................................................................................................................................20180.061001000
....................................................................................................................................................................................................................................................................................................AGC------------------AGCAG---------------------CAGCAGCAACAGCAGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
.............................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAAC---------------AGCAA---------CA...........................................................................................................................................................................................................................................................................................................................................................................19200.051001000
............................................................................................................................................................................................................................................................................................................................................................................................A---------CAA---CA---------ACAACAACAACAACAACAGC........................................................................................................................................................................................................................................................................................................................................26200.051010000
droAna3
CAGC---AAC-AG-----CAACCCC-------------------AA---------GC----------------------------------------------------CC----------------------------------------------CGCAACAGGTTGTGCCACCAGT-------------GGC--------------------GG--CTCAA-C---------------AGCAACCTC------------------------------C---GCAACAACAGC------------------AGC---------------------AACAGC---------AACAACAGC---------AGCAGCAGCAA---------------CA---------ACACCAACAGCAGCAACAGCAATCGCTTAAC----------G-------------------------ATCAGCT-------------GCAACACTCC--------------------------------------------------ATCAACGACATTG------------TCGGG---------------------------GG--------------------------AGGCAACAGCTCCGGATCAAC------CA-------------------------------------------------------------------CCAGC------AGCCAGAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................ACAGC---------AGCAGCAGCAA---------------CA---------ACACCAAC....................................................................................................................................................................................................................................................................................................................................................2611.001010000
.................................................................................................................................................................ACAGGTTGTGCCACCAGT-------------GGC--------------------GG--CT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
............G-----CAACCCC-------------------AA---------GC----------------------------------------------------CC----------------------------------------------CGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.......................................................................................................................................................................................................................GG--CTCAA-C---------------AGCAACCTC------------------------------C---GCAACAACAGC------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
......................................................................................................................................................................................................................................................................................................................................................C---------AACAACAGC---------AGCAGCAGCAA---------------CA---------ACACC.......................................................................................................................................................................................................................................................................................................................................................2811.001010000
........................................................................................................................................................................................................................................................................................................................................................................................AGCAA---------------CA---------ACACCAACAGCAGCAACAGC........................................................................................................................................................................................................................................................................................................................................2711.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------------------------AGGCAACAGCTCCGGATCAAC------CA-------------------------------------------------------------------CC..................2611.001000001
...................................................................................................................................................................................................................................................CAACCTC------------------------------C---GCAACAACAGC------------------AGC---------------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...................................................................................................................................................................................................................................................................................................................................................................AACAGC---------AGCAGCAGCAA---------------CA---------ACA.........................................................................................................................................................................................................................................................................................................................................................22200.55110001010
...................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAA---------------CA---------ACACCAACAGCA................................................................................................................................................................................................................................................................................................................................................2420.501001000
............................................................................................................................................................................................................................................................................................................................................................................................A---------------CA---------ACACCAACAGCAGCAACA..........................................................................................................................................................................................................................................................................................................................................2120.501000001
....................................................................................................................................................................................................................................................................................................................................................................ACAGC---------AGCAGCAGCAA---------------CA---------ACAC........................................................................................................................................................................................................................................................................................................................................................2220.501010000
........................................................................................................................................................................................................................................................................................................................................................................................AGCAA---------------CA---------ACACCAACAGCA................................................................................................................................................................................................................................................................................................................................................1960.171010000
......................................................................................................................................................................................................................................................................................................................................................................AGC---------AGCAGCAGCAA---------------CA---------ACACC.......................................................................................................................................................................................................................................................................................................................................................2160.171010000
..............................................................................................................................................................................................................................................................................................AACAACAGC------------------AGC---------------------AACAGC---------AACAACAGC---------.................................................................................................................................................................................................................................................................................................................................................................................................2760.171010000
................................................................................................................................................................................................................................................................................................................................................................AACAACAGC---------AGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................18200.153030000
.....................................................................................................................................................................................................................................................................................................................................................GC---------AACAACAGC---------AGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................20200.153021000
.............................................................................................................................................................................................................................................................................................CAACAACAGC------------------AGC---------------------AACAGC---------AACAACA............................................................................................................................................................................................................................................................................................................................................................................................................2690.111100000
................................................................................................................................................................................................................................................................................................................................................................AACAACAGC---------AGCAGCAGCAA---------------C......................................................................................................................................................................................................................................................................................................................................................................21200.102010001
...................................................................................................................................................................................................................................................................................................................................................CAGC---------AACAACAGC---------AGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................19200.102020000
.................................................................................................................................................................................................................................................................................................................................................................ACAACAGC---------AGCAGCAGCAA---------------CA---------............................................................................................................................................................................................................................................................................................................................................................21200.102000011
..................................................................................................................................................................................................................................................................................................................................................ACAGC---------AACAACAGC---------AGCAGCAGCAA---------------CA---------............................................................................................................................................................................................................................................................................................................................................................27100.101000001
........................................................................................................................................................................................................................................................................................................................................................................C---------AGCAGCAGCAA---------------CA---------ACACC.......................................................................................................................................................................................................................................................................................................................................................19110.091010000
....................................................................................................................................................................................................................................................................................................................................................AGC---------AACAACAGC---------AGCAGCAGCAA---------------CA---------AC..........................................................................................................................................................................................................................................................................................................................................................27120.081010000
.....................................................................................................................................................................................................................................................................................................GC------------------AGC---------------------AACAGC---------AACAACAGC---------AGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................26160.061010000
.................................................................................................................................................................................................................................................................................................AACAGC------------------AGC---------------------AACAGC---------AACAACA............................................................................................................................................................................................................................................................................................................................................................................................................22180.061010000
.................................................................................................................................................................................................................................................................................................................................................................ACAACAGC---------AGCAGCAGCAA---------------C......................................................................................................................................................................................................................................................................................................................................................................20200.051000001
.............................................................................................................................................................................................................................................................................................CAACAACAGC------------------AGC---------------------AACAGC---------A..................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
....................................................................................................................................................................................................................................................................................................................................................AGC---------AACAACAGC---------AGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
............................................................................................................................................................................................................................................................................................GCAACAACAGC------------------AGC---------------------AACAGC---------...................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................CAGC---------AGCAGCAGCAA---------------CA---------ACA.........................................................................................................................................................................................................................................................................................................................................................20200.051100000
.................................................................................................................................................................................................................................................................................................AACAGC------------------AGC---------------------AACAGC---------AACAA..............................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
......................................................................................................................................................................................................................................................................................................................................................C---------AACAACAGC---------AGCAGCAGCAA---------------CA---------............................................................................................................................................................................................................................................................................................................................................................23200.051010000
.....................................................................................................................................................................................................................................................................................................................................................GC---------AACAACAGC---------AGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................21200.051000100
................................................................................................................................................................................................................................................................................................CAACAGC------------------AGC---------------------AACAGC---------AACAAC.............................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
...................................................................................................................................................................................................................................................................................................................................................................AACAGC---------AGCAGCAGCAA---------------CA---------............................................................................................................................................................................................................................................................................................................................................................19200.051000100
....................................................................................................................................................................................................................................................................................................AGC------------------AGC---------------------AACAGC---------AACAACAGC---------.................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
..................................................................................................................................................................................................................................................................................................................................................ACAGC---------AACAACAGC---------AGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................24200.051000001
.........................................................................................................................................................................................................................................................................................................................AGC---------------------AACAGC---------AACAACAGC---------AGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
................................................................................................................................................................................................................................................................................................................................................................AACAACAGC---------AGCAGCAGCAA---------------CA---------............................................................................................................................................................................................................................................................................................................................................................22200.051100000
droBip1
CAAC---AAC-CG--CGCCAAGAGCCAGCAGAACTTCCA------------------------------------------------------------------------------------------------------GC--ACACACTGCGCATGCAGCACATGATGGCCCCGTCGATGCCCAACATCAGCAAC-----------------------------ATGTACCAC-------------C------------------------------A------G---CAGC------------------AGCAGCAGC---------------AACAAC------AGCAGCAGCAGCAGCCACAGTTGCCCCTGCAA---------------CA---------GCAGCAGCAGCACCAGCAGCAAC--------------------------------------------------------------------------------------------CCCTGATGAGCAGCAGCCAGAGCATGCAGAATGTGAACGAGTTCGGAGGAGGC----------------------------------------------------------------------------------------TATCAGAAC-----GGTGGCCTGGAGTA--------CC-G--------------------------ACGCAGCCAGCTCC--AT----GAACSizeHit CountTotal NormTotal
No Reads
droKik1
TAAC---AAT-CG--CACCAAGAGCCAGCAGAATTTCCA------------------------------------------------------------------------------------------------------GC--ATACCCTGCGCATGCAGCAGATGATGGCGCCATCAATGCCCAACATCAGCAAC-----------------------------ATGTACCAG-------------C------------------------------A------A---CAGC------------------AGCAACAACACC------------AACAGC---------AGCAGCAAC---------TCCCCCTGCAC---------------CA---------GCAACAGCAGC---AGCAGCAACCA-----------------------------------------------------------------------------------------CCTGTTATGAGCAGCAGCCAGAGCATGCAGAACGTCAACGATTTCACGGGTGG-----------------------------------CAGC--------------------------------------------------TATCAGAAT-----GGAGGCTTGGAGTA--------CC-G--------------------------ACGCAGCCAGCTCC--ATGACCCAGCSizeHit CountTotal NormTotal
No Reads
droFic1
CACT---ACG-TG----CCACC----------------------GGCG-----AAGCACGCCAGCGAGCATGCAA----CCGC----------------------------------------------------------------------------------------------------------------AACAGGAGCCC-------------------------------------------C------------------------------A---GCAACAGCAACAGCAACAGCAGCAGCAGCAGC---------------------AGCAAC---------AGCAACATC---------AACCGAAGCAA---------------CA---------GCAACAGCAACAGTGATAGCAAC--------TGCAG-------------------CTGACA-------------------------C-TGTGGCAACAGCAACCTTGACGG-------------------------------------------------------------------------------------------------------------------------CGACAACAGGTGCAGCTGCAA------CTG---CAGCAG----CGG-AGGT-----GACAACAAGCAT----------------T--------AAAACAACAGC--AACACCGACASizeHit CountTotal NormTotal
No Reads
droEle1
CAGC---AAC-AA-----CAACACT-------------------CC---------TC----------------------------------------------------ACT-GCGA-------------------------------CGCAGTTCACGTGGCAA--------------------------------GACGGGTTCTTGTGT-GAGTTCGGCAGCAGCAGC-----A------------C------------------------------A------G---CAGC------------------AGCAG---------------------C---------------------------------------AG---------------CAACA------CC---ACCAGCAGCAACAGCAACATAGCAAC----------GCTG----------CTGCT---------------------------GCTGTACAACAGCAATTGCTGCCACCGCCT---------------------------------------------GGTACC----------------------------------------------------------------------------------------TATCAATACCAACAGGTGGGCGGCAATA--------CC-G--------------------------T-------------------TGTAGTSizeHit CountTotal NormTotal
No Reads
droRho1
CAAT---CGC-AC-----CAAGAGCCAGCAGAACTTCCA------------------------------------------------------------------------------------------------------GC--ACACCCTGCGAATGCAGCAGATGATGGCTCCATCGATGCCCAATATCAGCAAC-----------------------------ATGTACCAC-------------C------------------------------A------C---CAGC------------------AGC---------------------AACAAC---------AGCAACAGC---------TGCCTCTGCAG---------------CA---------GCA---GCAACCACAGCAGCAAC--------------------------------------------------------------------------------------------CCGTTATGAGCAGCAGCCAGAGCATGCAAAATGTCAACGATTTTACAGGTGGC----------------------------------------------------------------------------------------TATCAGAAT-----GGCAGCCTGGAGTA--------TA-G--------------------------ACGCAGTCAGCTCC--ATGACCCAACSizeHit CountTotal NormTotal
No Reads
droBia1
CACT---TGC-AG-----CAAATG---------------------GACGCGC--AGTACACCAC----------------------------------------------CATGCC-------------------------GC--GTCCCCTGC--------------------------------ATCATCCG-CAGCTGGGCAGCTACTCGGTGC--ACCTGCAGAAGCACCAG-------------C------------------------------A------G---CTGC------------------AGC---------------------AGCAAC---------AGCAACAGA---------TGCAGCAGCAG------------CAACA---------GCAGCAGCAG------CAGCAAC--------AGCAGGCTACCCAGCA------------------------------AC-TTAGCCTGGGCTACTTCAGCAATGG-------------------------------CAATG-------------------------------TGGCGGCCACCGAGCAAGTGCCTCT----GC--------------------------------------------------CCT-------------------------------------C-G-C--------------------------CCTACCAGCG-A--GTGCCCCTGCSizeHit CountTotal NormTotal
No Reads
droTak1
CTTGAACAAT-CG--CACCAAGAGCCAGCAGAATTTTCA------------------------------------------------------------------------------------------------------GC--ACACTCTGCGCATGCAGCAGATGATGGCCCCATCGATGCCCAACATCAGCAAC-----------------------------ATGTACCAC-------------C------------------------------A------C---CAGC------------------AGC---------------------AGCAAC---------AACAACAGC---------TGCCCCTGCAA---------------CA---------GC---AGCAGCAACAGCAGCAAC--------------------------------------------------------------------------------------------CTCTCATGAGCAGCAGTCAGAGCATGCAGAATGTCAACGATTTCACGGGTGGC----------------------------------------------------------------------------------------TTCCAGAAT-----GGCAGTCTGGAGTA--------CA-G--------------------------AC---GTCAGCTCC--ATGATCCAGCSizeHit CountTotal NormTotal
No Reads
droEug1
CAAT---AAC-TA--CTATGCT----------------------GGAC-----------AACAG----------------------------------------------CA-GCAACATCCTATGCAGCAGC---AGCAA---------CTGC--------------------------------CACCGC---------------------------AGCATCAGCAGCAACAG-------------CAACTGCCACC--------------------G----------CAGC------------------AGC---------------------AGCAGC---------AACAGCAAC---------TGCCACCGCAG---------------CA---------GC------AG------CAGCAAC--------AGCAGCCCACGCAGCA---------------------------------GCAGCATACAATGCAGCAGCAATTGTATTAT----------------------------------------------------CCCAC----------TCACC----AGCAGCCACAAGTCCCGGCTCCACCGGAACCCGCTCTGGACTCGT-----T------T--------GACAACAAT---------------AATAGTA--------TT-G--------------------------GAGGAGTTAGT------GGCCGGAGCSizeHit CountTotal NormTotal
No Reads
dm3
CAGC---AGC-TT-----CAGCAGC-------------------AG-----------------------------------------------------------------------------------CATCAGCAACCATCGCATTCCCCACAG--------------------------------CATC---AGC-----------------------------ATGC--------------------GAGACTGCAGTCGCCACAAC-----CTGCTCCAGT-A---CAAC---------------------------------------------AAC---------AACAGCAGC---------AG---CAGCAG---------------CA---------ACAACAGCAGCAGCAGCAGCAGT--------------TCCTGCAGCAACAGGCTGCCGACA-------------------------CGTGGGGCAACATGAACTTTGGCAA----------------------------------------------------TCCAC--------------------------------------------------------------------------------CGAAC------AAT---CAGCAG----GTT-GAGCTCAAGGATAACAAATTC----------------TA--T---ATTGT-GGAAT----CGGCCGAGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG----GTT-GAGCTCAAGGATAAC......................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACA-------------------------CGTGGGGCAACATGAACTTTGGC...............................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT---CAGCAG----GTT-GAGCTC...............................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-GAGCTCAAGGATAACAAATTC----------------TA--T---........................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................CACAG--------------------------------CATC---AGC-----------------------------ATGC--------------------GAGACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG----GTT-GAGCTCAAGGATA........................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--T---ATTGT-GGAAT----CGGCCGAGT2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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......................................................................................................................................................................................................................................................................................................................................................................AGC---------AG---CAGCAG---------------CA---------ACAACAGCA...................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................GCAGC---------AG---CAGCAG---------------CA---------ACAACAGCAGCA................................................................................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AC---------AACAGCAGC---------AG---CAGCA.......................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AAC---------------------------------------------AAC---------AACAGCAGC---------AG---CAGCAG---------------CA---------AC..........................................................................................................................................................................................................................................................................................................................................................27110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AAC---------------------------------------------AAC---------AACAGCAGC---------AG---CAGCAG---------------CA---------ACA.........................................................................................................................................................................................................................................................................................................................................................28110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................CAAC---------------------------------------------AAC---------AACAGCAGC---------AG---CAGCAG---------------CA---------A...........................................................................................................................................................................................................................................................................................................................................................27130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAAC---AAC-AC-----TTG---------------------------------------------------------------------------------------------------------------------------------------------------------CCAACAATTCCCATCATCAACACT-------------T-GAGCACAACAG-------------------------------------------------------------------CAGC------------------AGC---------------------AACAGC---------AACTGCAGC---------AGCAACTGCAGCAGCAGCAGCAGCAACA---------GCAACTGCAGCAGCAACAGCAACC-------------------------ATGTTGCTGACTTCACC-GACAGCAGCAA-------------CTCA---------TTGCC----------------------------------------------------TGGCTGC--------------------------------------------------------------------------------TGCAA------CAT---CGGCAG----CAG-GTGT-----T--AATGT-TC------------AAATTAC--TGGCCAAGGCGTTTCAACCACTCTGAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGCAACAGCAAC.....................................................................................................................................................................................................................................................................................................................................18204.80960000247200000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AACC-------------------------ATGTTGCTGACTTCAC...........................................................................................................................................................................................................................................................................................2011.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGCAACAGCAACC-------------------------...........................................................................................................................................................................................................................................................................................................1921.00200000200000000000
......................................................................................................................................................................................................................................................................................................................................................C---------AACTGCAGC---------AGCAACT..........................................................................................................................................................................................................................................................................................................................................................................................17120.08100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................GCAACA---------GCAACTGCAGCA................................................................................................................................................................................................................................................................................................................................................18200.05100010000000000000
...........................................................................................................................................................................................................................AACAG-------------------------------------------------------------------CAGC------------------AGC---------------------AACAGC---------AAC................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000000100000
..........................................................................................................................................................................................................................................................................................................................GC---------------------AACAGC---------AACTGCAGC---------A................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACA---------GCA.........................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
droSec2
CAAC---CGC-AC-----CAAGAGCCAGCAGAACTTCCA------------------------------------------------------------------------------------------------------GC--ACACTCTTCGTATGCAGCAGATGATGGCTCCCTCCATGCCCAACATCAGCAAT-----------------------------ATGTACCAT-------------C------------------------------A------C---CAGC------------------AGC---------------------AACAAC---------AGCAACAGC---------TGCCCCTGCAG---------------CA---------ACAGCAGCAGCAGCAACAGCAAC--------------------------------------------------------------------------------------------CTCTGATGAGCAGCAGTCAGAGCATGCAGAATGTTAACGATTTTACAGGTGGC----------------------------------------------------------------------------------------TATCAGAAT-----GGCAATCTGGAGTA--------CA-G--------------------------GCGCAGTCAGCTCC--ATGATCCATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACGATTTTACAGGT.......................................................................................................................................................................................1812.0020020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAC--------------------------------------------------------------------------------------------CTCTGATGAGC..............................................................................................................................................................................................................................1811.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------------------------------------------------------------------------------TATCAGAAT-----GGCAATCTGGA...................................................................2111.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGTCAGAGCATG...............................................................................................................................................................................................................1811.0010010
....................................................................................................................................................CTCTTCGTATGCAGCAGATGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
................................ACTTCCA------------------------------------------------------------------------------------------------------GC--ACACTCTTCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
....................................................................................................................................................CTCTTCGTATGCAGCAGATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...........AC-----CAAGAGCCAGCAGAACTTCCA------------------------------------------------------------------------------------------------------GC--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAAC--------------------------------------------------------------------------------------------CTCTGATGAGCAGC...........................................................................................................................................................................................................................2411.0010010
.AAC---CGC-AC-----CAAGAGCCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAGCAAC--------------------------------------------------------------------------------------------C........................................................................................................................................................................................................................................1960.1710001
..........................................................................................................................................................................................................................................................................................................................................................................................CAG---------------CA---------ACAGCAGCAGCAGCAACAGCA.......................................................................................................................................................................................................................................................................................................................................26180.0610010
............................................................................................................................................................................................................................................................................................................................................................................................G---------------CA---------ACAGCAGCAGCAGCAA............................................................................................................................................................................................................................................................................................................................................19200.0510010
droYak3
CATC---GAATCGCGTAGCCCA----------------------GGCCATGC--------------TGC------TGATGTCGACGTCGCAGCAGCAGCAGCAGCAGTGGCA-GCAACATCAGTGGCAGCAAC---AGCAA---------CTGC--------------------------------AGCAGC---------------------------AGCAACAGCAGCAG----------------------------------------------------------------------------------------CAACAACAGCAGCAGCAACAGC---------AGCAA------------------CAGCAG---------------CAACAGCAGCAGCA---GC------AGCAGCAAC----------------------------------------------------------------------------------------------------AGCAGCAGCAACAACAAGGGCAGCGGCGACGA-----------------------------------------------------------------------------------------------------------------------------------------CG-CGCGCAGTTATTATAATA---------A------TGGC--------GTTAGTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---GC------AGCAGCAAC----------------------------------------------------------------------------------------------------AGCAGCAGC........................................................................................................................................................................................................................25200.30600000000006
.....................................................................................................................................................................................................................................GCAG----------------------------------------------------------------------------------------CAACAACAGCAGCAGCAACAGC---------AGC................................................................................................................................................................................................................................................................................................................................................................................................................29180.06100100000000
.....................................................................................................................................................................................................................................GCAG----------------------------------------------------------------------------------------CAACAACAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100000000
..............................................................................................................................................................................................................................AACAGCAGCAG----------------------------------------------------------------------------------------CAACAACAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
.......................................................................................................................................................................................................................................AG----------------------------------------------------------------------------------------CAACAACAGCAGCAGCAACAGC---------...................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100100000000
....................................................................................................................................................................................................................................AGCAG----------------------------------------------------------------------------------------CAACAACAGCAGCAGCAACAGC---------...................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC----------------------------------------------------------------------------------------------------AGCAGCAGCAACA....................................................................................................................................................................................................................19200.05101000000000
..............................................................................................................................................................................................................................AACAGCAGCAG----------------------------------------------------------------------------------------CAACAACAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
...........................................................................................................................................................................................................................AGCAACAGCAGCAG----------------------------------------------------------------------------------------CAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
droEre2
CAAC---CGC-AC-----CAAGAGCCAGCAGAATTTCCA------------------------------------------------------------------------------------------------------GC--ACACTCTTCGCATGCAGCAGATGATGGCTCCATCTATGCCGAACATCAGCAAC-----------------------------ATGTTCCAT-------------C------------------------------A------C---CAGC------------------AGC---------------------AACAAC---------AGCCACAGC---------TGCCCCTGCAG---------------CA---------ACA---GC------AGCAGCAAC--------------------------------------------------------------------------------------------CGCTAATGAGCAGCAGTCAGAGCATGCAGAATGTCAACGATTTCACAGGTGGC----------------------------------------------------------------------------------------TATCCGAAT-----GGTAGTCTGGAGTA--------CA-G--------------------------GCGCAGTCAGCTCC--ACGATCCATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC--------------------------------------------------------------------------------------------CGCTAATGAGCAGC...........................................................................................................................................................................................................................2013.0031000110
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGAGCATGCAGAATGT.......................................................................................................................................................................................................2013.0031000200
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGAAT-----GGTAGTCTGGA...................................................................1912.0020000200
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTCAGAGCATGCAGAAT.........................................................................................................................................................................................................2111.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGAGTA--------CA-G--------------------------GCGCAGTCAGCT..............2511.0011000000
.............................................................................................................................................GC--ACACTCTTCGCATGCAGCAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGTCAGAGCATGCAGAATGT.......................................................................................................................................................................................................2411.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGAGCATGCAGAAT.........................................................................................................................................................................................................1811.0010010000
............................................................................................................................................................................................................................................................................................................................................................................................................CA---------ACA---GC------AGCAGCAAC--------------------------------------------------------------------------------------------CGCT.....................................................................................................................................................................................................................................2011.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................CCTGCAG---------------CA---------ACA---GC------AGCAGCAAC--------------------------------------------------------------------------------------------CGC......................................................................................................................................................................................................................................2611.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA--------CA-G--------------------------GCGCAGTCAGCTCC--ACGATC....2611.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--------------------------------------------------------------------------------------------CGCTAATGAGCAGCAGTCAGA....................................................................................................................................................................................................................2411.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................GC------AGCAGCAAC--------------------------------------------------------------------------------------------CGCTAATGAGCAGCA..........................................................................................................................................................................................................................2611.0010000010
.........................................................................................................................................................................................................................................................................................................................AGC---------------------AACAAC---------AGCCACAGC---------TGCCCCT..........................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCACAGGTGGC----------------------------------------------------------------------------------------TATCCGAAT-----GGT...........................................................................2711.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC--------------------------------------------------------------------------------------------CGCTAATGAGCAGCAGTCAGA....................................................................................................................................................................................................................2611.0011000000
..............................................................................................................................................................................................TCAGCAAC-----------------------------ATGTTCCAT-------------C------------------------------A------C---CAGC------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-G--------------------------GCGCAGTCAGCTCC--ACGATCC...2311.0011000000
.........................................................................................................................................................................................GAACATCAGCAAC-----------------------------ATGTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA--------CA-G--------------------------GCGCAGTCAGCTCC--ACGATCC...2711.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAC--------------------------------------------------------------------------------------------CGCTAATGAGCAGCAGTC.......................................................................................................................................................................................................................2611.0010000100
.AAC---CGC-AC-----CAAGAGCCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAC--------------------------------------------------------------------------------------------CGCTAATGAGCAGC...........................................................................................................................................................................................................................2211.0011000000
...............................................................................................................................................................................................CAGCAAC-----------------------------ATGTTCCAT-------------C------------------------------A------C---CAGC------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--------------------------------------------------------------------------------------------CGCTAATGAGCAGCAGTC.......................................................................................................................................................................................................................2111.0011000000
....................................................................................................................................................................................................................................................................................................AGC------------------AGC---------------------AACAAC---------AGCCACAGC---------T................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.....................................................................................................................................................................................................................................................................................................GC------------------AGC---------------------AACAAC---------AGCCACAGC---------T................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...................................................................................................................................................ACTCTTCGCATGCAGCAGATGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGCAGCAGTCAGAGC..................................................................................................................................................................................................................1911.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTCAGAGCATGCAGAATGT.......................................................................................................................................................................................................2211.0010000010
..........................AGCAGAATTTCCA------------------------------------------------------------------------------------------------------GC--ACACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAACGATTTCACAGGTGG.....................................................................................................................................................................................2011.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTCAGAGCATGCAGAAT.........................................................................................................................................................................................................2011.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAAT-----GGTAGTCTGGA...................................................................1811.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGAGCAGCAGTCAGAG...................................................................................................................................................................................................................2111.0010000100

Generated: 05/18/2015 at 02:22 AM