dmo_2262

Name	Class	Family	Strand
(CAA)n	Simple_repeat	Simple_repeat	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GATATATTGGTGGCAGGCACATTGTAATAGAGCCATGCAACACGAAGCAAAGGCAGCAGCAGCAGCAGCAGGAAATGGCTCTGCGTCCAGCTGATTGATTATGGGACAGAGGCATTCGCTTTGCCTGACAACCTTAATTAAAACAACTTTTTGGTTACCTTTACAGCTGCTCTGCCACAACCACAACAACAACAACAACAGCAACAGTTTCTATAGTCGCGCAGACATCTGCAACATCAGCGTTTGGCCCA ************************************************.(((((.((((((..((((.(((..((......))))).)))).(((((((.((.....(((((.......))))).....)).)))))))...((((....)))).........))))))))))).........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V056 head	V049 head
..................................................................................................................................................................................................................CTATAGTCGCGCAGACATCTG....................	21	0	1	1.00	1	1	0	0	0
...............................................................................................................................................................................................................TTTCTATAGTCGCGCAGACATCTGCAAC................	28	0	1	1.00	1	1	0	0	0
...................CATTGTAATAGAGCCATGCAACACGAAG............................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0
.......................................................................................................GGACAGAGGGCTTCGCTGTG................................................................................................................................	20	3	5	0.20	1	0	0	1	0
........................................................................................................................TTGCCAGAGAACCTTAATGAAA.............................................................................................................	22	3	5	0.20	1	0	1	0	0
...........................................................................TGGCTGTGCGGCCAGCTGGTTG..........................................................................................................................................................	22	3	8	0.13	1	0	0	0	1
.........................................................................................................................................................................................ACAACAACAACAACAGCAACAGT...........................................	23	0	20	0.05	1	1	0	0	0
................................................................................................................................................................................ACAACCACAACAACAACAA........................................................	19	0	20	0.05	1	0	1	0	0

CTATATAACCACCGTCCGTGTAACATTATCTCGGTACGTTGTGCTTCGTTTCCGTCGTCGTCGTCGTCGTCCTTTACCGAGACGCAGGTCGACTAACTAATACCCTGTCTCCGTAAGCGAAACGGACTGTTGGAATTAATTTTGTTGAAAAACCAATGGAAATGTCGACGAGACGGTGTTGGTGTTGTTGTTGTTGTTGTCGTTGTCAAAGATATCAGCGCGTCTGTAGACGTTGTAGTCGCAAACCGGGT ************************************************.(((((.((((((..((((.(((..((......))))).)))).(((((((.((.....(((((.......))))).....)).)))))))...((((....)))).........))))))))))).........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head	V049 head
......................................................................................................................GAAACGGACTGTCAGAAT...................................................................................................................	18	2	7	0.14	1	1	0
..................................................................................................................AAGAGAGACGGGCTGTTGGA.....................................................................................................................	20	3	11	0.09	1	1	0
..............................................................................................................................................................GCAATATCGGCGAGACGGT..........................................................................	19	3	15	0.07	1	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6654:752042-752292 +	dmo_2262	GAT---------ATATTGGTGGCAGGCA---CATTGTAATAGAGCCAT-GCAAC----ACGAAGCAAAGGCAGCAGCAGCAG---------------CAGCAGGAA----------------------------------ATGGC---------------------TCTGCGTCCAGCTGATTGATTATGGGACAG-----------------A-------GGCATTCGCTTTG---------C-----C-----------------TGACA-ACCTTAATTAAAACAACTTTTTG-------GTTACCTT--------------------------TACAGCTGCT-C----------------------------------------------------------------------T---GCCACAACC---ACA---------ACAACAAC---------AACAACAGCA----ACAGTTTCTATAGTCGCGCAGAC---------------------ATCTGCAACATCAGCGTTTG------------------------------------------------------------GCCCA
droVir3	scaffold_13049:3218832-3219096 -		GGT---------ATT--GGTGGCAGCCA---CATTGTAATAGAGCCAT-GCTGCATCCACGA---AAATGC------------------------TGCAGCAGGAA----------------------------------ATGG---------------------------------CTGATTGATTATGAGACAG----------------AA-------GGCATTCGCTTTTAAATAAACGCTTCTCT-----------------TGGCA-TTTTTAATTAAAGCAAGTTTC-G-------TTTGCCTT----------CTTCCATCTTACCCC---CAG-----------------------------------------------------------------CTGCAGTCTATGT---GCCACAACAACAACA---------ACAACAAC---------AACAGCAGCA----GCAGTTTTTATAGCCGCGCCGAC---------------------ATCTGCAACATCAGCGTTTG------------------------------------------------------------GCCCA
droGri2	scaffold_15110:4141839-4142108 -		GGG---------GGATTGCTTTTAGCCCCGGCATTATAATAAAGACAT-G--------------------------------------------------CAGGAA----------------------------------ATAC--GCTGCTCTGCTCAGCTCTGCTCAGCTCCCAGCTGATTGATTATGAGTTT------------------T-------GGCATTCGCTTTT---------CTTTTCTTTTCATTTCTTTTCGATTTATA-ATTTTAATTAAACCAACTTTT-C-------TT--------------ATCCTCCA---------------------------------------------------------------------CTTTCCAACAGCTGCTGTCAATGT---G------CA---ACAACAACAACAACAATAAC---------A-------------GTCGCTTCTACAGTCGCGCTGAT---------------------ATTTGCAACATCAGCGTCTG------------------------------------------------------------GCCCA
droWil2	scf2_1100000004590:4385525-4385704 -		GCA---------AGT----------------------------------G--------------------CAACAGCAGCAGA------------CACAGCAGGCA----------------------------------GTGGCTGCGGCCGCAGCCGCCG---------------------------------------------------------------------TCA---------C-----C-----------------CAGCA-GCTTCAGCAACAACAG-------------------------------------------------------------CAGGCCGTCGCCCAA---CAGCAGCAGCAACAG---------------CAG-----------------------------CA------------------ACAAC---------AACAGCAG----------------------CAGCAACAACAGCAGCAGCAGCAAGTGCAACAGCAACAGCAAGTAGTG------------------------------------------------------------GCCCA
dp5	XR_group3a:978635-978741 +		TTA---------AAATTAC-AT------------------------------------------------------T---------------------------------------------------------------TTCCTCACTGCTCTCTCCT--------------------------------------------------------------------------------------------------------------------------------------------------CTCTCT--------------------------CTCAC--------------------------------TCGCTC---------------------------------------T---GCCAC-----------------------------------------CAGCA----GCA-TTTCTATAGCCGTGCGGAC---------------------ATTTGCAACATCAGCGTGTG------------------------------------------------------------GCCCA
droPer2	scaffold_27:146643-146713 +		CCTGACCAACTCAAACGATTTGCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTA-----------------------------------------GCCGAC-A----------------------------------------------------------------------T---GACC----------------------------------------------------------------------AAAC---------------------AACAACAACAACAAAAACAG------------------------------------------------------------CAACA
droAna3	scaffold_13337:10678131-10678279 +		TGA---------CAACA-TTTGCAGG------ATTCCAACAACATCATGGCCGC----ACCCAGCCAAAGC--------------------------------------------------------------------------CACAGCCACAGCCA--------------------------------------------------------------------------------------------------------------CCA--------CATCTATGA-------------------------------------------------------------CTTG-----------CCACAG-----------------------------------------------------------------------CAATTGCAGCAGC------------------A----ACAACATCTACAATTGCAACAAC---------------------AACAACAGCAACAGCATCAA------------------------------------------------------------CATCA
droBip1	scf7180000396426:303787-303872 +		TGC---------TC---------------------------------A-G--------------------CAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGC---AA---------------C--------------------------------------A---------ACAGCAAC---------AACAGCAGCAAAACGCAGTGCAAGCGGCGGCCCAAGC---------------------AGCCGCTGCAGCAGCAGCTG------------------------------------------------------------GTC--
droKik1	scf7180000302476:715816-715943 +		GGG---------CCA--------------------------------T-G--------------------CAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAG---------------CA-----------------------------------------------GAAGCAGAAGCAGCAACA-------------------------------CCAGC---------------------AGCAGCAGCAGCAGCATCAGACTGCAAATGGAGTCGGGGGCAGCAACATTATCCTGCTGCGCGGCACTCGCAACGAAAATGGC--
droFic1	scf7180000454073:2983433-2983554 -		GGC---------ATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCGTG---------G-----C-----------------TGTCGCACTTTCGGTAATGTGACACTTTG---------TGCCAT--------------------------GG-----------CATG-----------TGGCAG---CTGCAACAA---------------CAC-----------------------------CA------------------ACAAC---------ATCACCAGCA----G---------------CAGCTAC---------------------AACAACAACAACAACATT--------------------------------------------------------------GGCAA
droEle1	scf7180000491006:114939-115160 -		GCA---------ACA--------------------------------A-G--------------------CAGCAGCAGCAGCAGCAACATCAGCAGCATC--------------------------------------------------------------------------AGCAGAAGAACGAGGAGTCCAAAGTGTTCATCGACATACGGAATTCAGCACCAG---------------------------------------------ACGTGATTATCATGACGTCCCA-------TTGACATTTAAGGATGGCCCGCCA---------------------------------------------------------------------ATCAGCAACAACAACGGTA-GTGAACAG------GA------------------GCAAC------------------A----ACAATAGCAACAACAGCAGCATC---------------------AACAACAACAGCAGCAGCAG------------------------------------------------------------GAGCA
droRho1	scf7180000770177:24415-24495 -		ACA---------AC---------------------------------A-A--------------------CAACAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------C--------------------------------------A---------ACAACAAC---------A-------------ACAACAACAACAGCTGCGCAACCAACAAC---------------AACATCAACAACAACAGCGG------------------------------------------------------------GAGCA
droBia1	scf7180000300910:514843-514894 -		AGC---------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGTTTCTACAGCCGCGCGGAC---------------------ATCTGCAACATCAGCGTGTG------------------------------------------------------------GCCAG
droTak1	scf7180000414529:16033-16122 +		TAC---------AAACGCTTTGCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTCCA--------------TCAG---CATCAGAAACAG---------------CAG-----------------------------CA------------------TCAAC---------A----------------------TCACCATCCCAAAC---------------------AGCTCCATCAGCAGCACAAG------------------------------------------------------------CCCCC
droEug1	scf7180000407600:19519-19597 +		CAA---------TTTCT-TTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAC---GT-----------------------------------------------CA---ACC---------GTAACAACAACAACAACC-------------GCAACTGTAACGACAGCGCGATT---------------------AACGACGTCATCAGC----------------------------------------------------------------------
dm3	chr3R:20277838-20277908 -		ACG---------ACGGCGC----------------------------A-G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAT---------------CAG-----------------------------CA------------------GCAAC---------ATCAGCAG----------------------CAACAGC---------------------AACTGCAACATCAGCAACTG------------------------------------------------------------CAGCA
droSim2	3r:19809086-19809158 -		CGC---------A-----------------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAG--------------------------------------------------------------CAACAGCAGCAGCAGCAGCAACA----------------------TCAGCAGCAACAGC---------------------AATTGCAACATCAGCAACTG------------------------------------------------------------CAGCA
droSec2	scaffold_0:20614376-20614442 -		CGC---------AGC--------------------------------A-G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAG---------------CAG-----------------------------CA------------------GCAAC---------ATCAGCAG----------------------CAACAGC---------------------AATTGCAACATCAGCAACTG------------------------------------------------------------CAGCA
droYak3	3L:10573659-10573795 +		CAA---------CAGCA-GCAG------------------------------------------------------CAGCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCTGTTGTCCAG---CAGCAACAGCAGCAGGTTGCTGCCGCCGCCCAG-----------------------------CA------------------GCAAC---------ATCAGCAG----------------------CAGCAACAACAACAACAGCAGGCCGTGCAGCAGCAGCAGCAACAGGCG------------------------------------------------------------GTCCA
droEre2	scaffold_4929:14588571-14588761 +		CAA---------GC---------------------------------A-A--------------------CAG---CAGCAGCAGCAACAACAACAGCAGCAGCAAAAGAATTTCGGGGGCATACGCTTTAATTTGAATTTAAACCAAAAGCGTTTGGC------------------------------------------------------------------------------------------------------------------------------C---------GGTGGTCCCA--------------------------ATCCCCTGCAGCAGCAGCA--------------GCAA---C---------AA-----------------------------------------------CA---ACA---------ACAACAGC---------AGCAACAGCA----ACAACTTCAACAACTTCAACAAC---------------------AACAACATCATCAGC----------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GAT---------ATATTGGTGGCAGGCA---CATTGTAATAGAGCCAT-GCAAC----ACGAAGCAAAGGCAGCAGCAGCAG---------------CAGCAGGAA----------------------------------ATGGC---------------------TCTGCGTCCAGCTGATTGATTATGGGACAG-----------------A-------GGCATTCGCTTTG---------C-----C-----------------TGACA-ACCTTAATTAAAACAACTTTTTG-------GTTACCTT--------------------------TACAGCTGCT-C----------------------------------------------------------------------T---GCCACAACC---ACA---------ACAACAAC---------AACAACAGCA----ACAGTTTCTATAGTCGCGCAGAC---------------------ATCTGCAACATCAGCGTTTG------------------------------------------------------------GCCCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATAGTCGCGCAGAC---------------------ATCTG................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTATAGTCGCGCAGAC---------------------ATCTGCAAC............................................................................	28	1	1.00	1	1	0	0	0	0	0
...............................CATTGTAATAGAGCCAT-GCAAC----ACGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAC---------AACAACAGCA----ACAGT............................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACC---ACA---------ACAACAAC---------AA.............................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0

droVir3

GGT---------ATT--GGTGGCAGCCA---CATTGTAATAGAGCCAT-GCTGCATCCACGA---AAATGC------------------------TGCAGCAGGAA----------------------------------ATGG---------------------------------CTGATTGATTATGAGACAG----------------AA-------GGCATTCGCTTTTAAATAAACGCTTCTCT-----------------TGGCA-TTTTTAATTAAAGCAAGTTTC-G-------TTTGCCTT----------CTTCCATCTTACCCC---CAG-----------------------------------------------------------------CTGCAGTCTATGT---GCCACAACAACAACA---------ACAACAAC---------AACAGCAGCA----GCAGTTTTTATAGCCGCGCCGAC---------------------ATCTGCAACATCAGCGTTTG------------------------------------------------------------GCCCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................................................................................................................................................................................................................................................AG-----------------------------------------------------------------CTGCAGTCTATGT---GCCACAACA...............................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AG-----------------------------------------------------------------CTGCAGTCTATGT---GCCACAAC................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................TTAATTAAAGCAAGTTTC-G-------TTTG............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCAACATCAGCGTTTG------------------------------------------------------------.....	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCA----GCAGTTTTT........................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TGATTATGAGACAG----------------AA-------GGC...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TAAAGCAAGTTTC-G-------TTTGCCTT----------CTTCCA........................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................TCCACGA---AAATGC------------------------TGCAGCAGGAA----------------------------------AT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC---------AACAGCAGCA----GCAGTTT..........................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------ACAACAAC---------AACAGCAGCA----GCAGT............................................................................................................................	24	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---------ACAACAAC---------AACAGCAGCA----GCAGT............................................................................................................................	27	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACA---------ACAACAAC---------A..............................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAACAACAACA---------ACAACAAC---------...............................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC---------AACAGCAGCA----GCAG.............................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GGG---------GGATTGCTTTTAGCCCCGGCATTATAATAAAGACAT-G--------------------------------------------------CAGGAA----------------------------------ATAC--GCTGCTCTGCTCAGCTCTGCTCAGCTCCCAGCTGATTGATTATGAGTTT------------------T-------GGCATTCGCTTTT---------CTTTTCTTTTCATTTCTTTTCGATTTATA-ATTTTAATTAAACCAACTTTT-C-------TT--------------ATCCTCCA---------------------------------------------------------------------CTTTCCAACAGCTGCTGTCAATGT---G------CA---ACAACAACAACAACAATAAC---------A-------------GTCGCTTCTACAGTCGCGCTGAT---------------------ATTTGCAACATCAGCGTCTG------------------------------------------------------------GCCCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

GCA---------AGT----------------------------------G--------------------CAACAGCAGCAGA------------CACAGCAGGCA----------------------------------GTGGCTGCGGCCGCAGCCGCCG---------------------------------------------------------------------TCA---------C-----C-----------------CAGCA-GCTTCAGCAACAACAG-------------------------------------------------------------CAGGCCGTCGCCCAA---CAGCAGCAGCAACAG---------------CAG-----------------------------CA------------------ACAAC---------AACAGCAG----------------------CAGCAACAACAGCAGCAGCAGCAAGTGCAACAGCAACAGCAAGTAGTG------------------------------------------------------------GCCCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................CACAGCAGGCA----------------------------------GTGGCTGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..........................................................................AGCAGCAGA------------CACAGCAGGCA----------------------------------GTGGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................AGGCCGTCGCCCAA---CAGCAGCA.......................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................GCAACAACAG-------------------------------------------------------------CAGGCCGTCGCCC....................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................ACAG-------------------------------------------------------------CAGGCCGTCGCCCAA---CAGCAG.........................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................CGCAGCCGCCG---------------------------------------------------------------------TCA---------C-----C-----------------CAGC................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................GCCGCAGCCGCCG---------------------------------------------------------------------TCA---------C-----C-----------------C...................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................CAG-------------------------------------------------------------CAGGCCGTCGCCCAA---CAGCAGCAG......................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................CAG-------------------------------------------------------------CAGGCCGTCGCCCAA---CAGCAGCA.......................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.......................................................................AACAGCAGCAGA------------CACAGCAGGCA----------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................CCCAA---CAGCAGCAGCAACAG---------------C................................................................................................................................................................................................................	21	9	0.11	1	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG----------------------CAGCAACAACAGCA...................................................................................................	20	20	0.10	2	0	2	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---------AACAGCAG----------------------CAGCAACAAC.......................................................................................................	20	20	0.10	2	0	0	0	0	2
................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAG---------------CAG-----------------------------CA------------------.............................................................................................................................................................	20	20	0.10	2	0	0	0	2	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAGCAGCAGCAGC...........................................................................................	22	20	0.10	2	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAG----------------------CAGCAACAACAGCAGCAGCA.............................................................................................	27	19	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAG----------------------CAGCAACAACAGCAGCA................................................................................................	25	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------AACAGCAG----------------------CAGCAACAA........................................................................................................	20	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAG----------------------CAGCAACAACAGCAGCA................................................................................................	24	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG----------------------CAGCAACAACAGCAGCA................................................................................................	22	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG----------------------CAGCAACAACAGCAG..................................................................................................	21	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------AACAGCAG----------------------CAGCAACAAC.......................................................................................................	21	20	0.05	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................CAACAG---------------CAG-----------------------------CA------------------ACAAC---------AACAGC.........................................................................................................................................	22	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................CAACAG---------------CAG-----------------------------CA------------------ACAAC---------AACAGCAG----------------------C................................................................................................................	25	20	0.05	1	0	0	0	1	0

dp5

TTA---------AAATTAC-AT------------------------------------------------------T---------------------------------------------------------------TTCCTCACTGCTCTCTCCT--------------------------------------------------------------------------------------------------------------------------------------------------CTCTCT--------------------------CTCAC--------------------------------TCGCTC---------------------------------------T---GCCAC-----------------------------------------CAGCA----GCA-TTTCTATAGCCGTGCGGAC---------------------ATTTGCAACATCAGCGTGTG------------------------------------------------------------GCCCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----GCA-TTTCTATAGCCGTGCGGAC---------------------A....................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CCTGACCAACTCAAACGATTTGCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTA-----------------------------------------GCCGAC-A----------------------------------------------------------------------T---GACC----------------------------------------------------------------------AAAC---------------------AACAACAACAACAAAAACAG------------------------------------------------------------CAACA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

TGA---------CAACA-TTTGCAGG------ATTCCAACAACATCATGGCCGC----ACCCAGCCAAAGC--------------------------------------------------------------------------CACAGCCACAGCCA--------------------------------------------------------------------------------------------------------------CCA--------CATCTATGA-------------------------------------------------------------CTTG-----------CCACAG-----------------------------------------------------------------------CAATTGCAGCAGC------------------A----ACAACATCTACAATTGCAACAAC---------------------AACAACAGCAACAGCATCAA------------------------------------------------------------CATCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TGC---------TC---------------------------------A-G--------------------CAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGC---AA---------------C--------------------------------------A---------ACAGCAAC---------AACAGCAGCAAAACGCAGTGCAAGCGGCGGCCCAAGC---------------------AGCCGCTGCAGCAGCAGCTG------------------------------------------------------------GTC--	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGG---------CCA--------------------------------T-G--------------------CAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAG---------------CA-----------------------------------------------GAAGCAGAAGCAGCAACA-------------------------------CCAGC---------------------AGCAGCAGCAGCAGCATCAGACTGCAAATGGAGTCGGGGGCAGCAACATTATCCTGCTGCGCGGCACTCGCAACGAAAATGGC--	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGC---------ATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCGTG---------G-----C-----------------TGTCGCACTTTCGGTAATGTGACACTTTG---------TGCCAT--------------------------GG-----------CATG-----------TGGCAG---CTGCAACAA---------------CAC-----------------------------CA------------------ACAAC---------ATCACCAGCA----G---------------CAGCTAC---------------------AACAACAACAACAACATT--------------------------------------------------------------GGCAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCA---------ACA--------------------------------A-G--------------------CAGCAGCAGCAGCAGCAACATCAGCAGCATC--------------------------------------------------------------------------AGCAGAAGAACGAGGAGTCCAAAGTGTTCATCGACATACGGAATTCAGCACCAG---------------------------------------------ACGTGATTATCATGACGTCCCA-------TTGACATTTAAGGATGGCCCGCCA---------------------------------------------------------------------ATCAGCAACAACAACGGTA-GTGAACAG------GA------------------GCAAC------------------A----ACAATAGCAACAACAGCAGCATC---------------------AACAACAACAGCAGCAGCAG------------------------------------------------------------GAGCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACA---------AC---------------------------------A-A--------------------CAACAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------C--------------------------------------A---------ACAACAAC---------A-------------ACAACAACAACAGCTGCGCAACCAACAAC---------------AACATCAACAACAACAGCGG------------------------------------------------------------GAGCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGC---------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGTTTCTACAGCCGCGCGGAC---------------------ATCTGCAACATCAGCGTGTG------------------------------------------------------------GCCAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAC---------AAACGCTTTGCTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTCCA--------------TCAG---CATCAGAAACAG---------------CAG-----------------------------CA------------------TCAAC---------A----------------------TCACCATCCCAAAC---------------------AGCTCCATCAGCAGCACAAG------------------------------------------------------------CCCCC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CAA---------TTTCT-TTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAC---GT-----------------------------------------------CA---ACC---------GTAACAACAACAACAACC-------------GCAACTGTAACGACAGCGCGATT---------------------AACGACGTCATCAGC----------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACG---------ACGGCGC----------------------------A-G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAT---------------CAG-----------------------------CA------------------GCAAC---------ATCAGCAG----------------------CAACAGC---------------------AACTGCAACATCAGCAACTG------------------------------------------------------------CAGCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................AACAT---------------CAG-----------------------------CA------------------GCAAC---------ATC............................................................................................................................................	18	7	0.57	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AG-----------------------------CA------------------GCAAC---------ATCAGCAG----------------------CAACAG...........................................................................................................	23	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC---------ATCAGCAG----------------------CAACAG...........................................................................................................	19	14	0.21	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................T---------------CAG-----------------------------CA------------------GCAAC---------ATCAGCAG----------------------C................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................GCAACAT---------------CAG-----------------------------CA------------------GCAAC---------ATCAG..........................................................................................................................................	22	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------------------CA------------------GCAAC---------ATCAGCAG----------------------CAACAG...........................................................................................................	22	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------ATCAGCAG----------------------CAACAGC---------------------AAC..................................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---------ATCAGCAG----------------------CAACAGC---------------------AAC..................................................................................	22	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG----------------------CAACAGC---------------------AACTGCA..............................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................A-G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAT---------------CAG-----------------------------CA------------------GC...........................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAT---------------CAG-----------------------------CA------------------GCA..........................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------------------CA------------------GCAAC---------ATCAGCAG----------------------CA...............................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AG-----------------------------CA------------------GCAAC---------ATCAGCAG----------------------C................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CGC---------A-----------------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAG--------------------------------------------------------------CAACAGCAGCAGCAGCAGCAACA----------------------TCAGCAGCAACAGC---------------------AATTGCAACATCAGCAACTG------------------------------------------------------------CAGCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAGCAACA----------------------TC......................................................................................................................	24	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA----------------------TCAGCAGCAACAGC---------------------.....................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CGC---------AGC--------------------------------A-G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAG---------------CAG-----------------------------CA------------------GCAAC---------ATCAGCAG----------------------CAACAGC---------------------AATTGCAACATCAGCAACTG------------------------------------------------------------CAGCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------------------CA------------------GCAAC---------ATCAGCAG----------------------CAAC.............................................................................................................	20	13	0.08	1	0	0	1	0

droYak3

CAA---------CAGCA-GCAG------------------------------------------------------CAGCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCTGTTGTCCAG---CAGCAACAGCAGCAGGTTGCTGCCGCCGCCCAG-----------------------------CA------------------GCAAC---------ATCAGCAG----------------------CAGCAACAACAACAACAGCAGGCCGTGCAGCAGCAGCAGCAACAGGCG------------------------------------------------------------GTCCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGGCCGTGCAGCAGCAGCA...........................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------------------CA------------------GCAAC---------ATCAGCAG----------------------CAGC.............................................................................................................	20	20	0.60	12	0	12	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGCCGTGCAGCAGCA..............................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................CAG---CAGCAACAGCAGCAGGT..............................................................................................................................................................................................................................	20	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------GCAAC---------ATCAGCAG----------------------CAGCAAC..........................................................................................................	21	20	0.15	3	0	0	0	0	0	0	3	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACAGGC..................................................................	21	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
..............GCA-GCAG------------------------------------------------------CAGCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGC............................................................................................................................................................................................................................................................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------------------CA------------------GCAAC---------ATCAGCAG----------------------CAGCAAC..........................................................................................................	23	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------ATCAGCAG----------------------CAGCAAC..........................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGCAGCAGCAACAG....................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------ATCAGCAG----------------------CAGCAACA.........................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................CAG-----------------------------CA------------------GCAAC---------ATCAGCAG----------------------C................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0
..................GCAG------------------------------------------------------CAGCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGC............................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC---------ATCAGCAG----------------------CAGCAAC..........................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC---------ATCAGCAG----------------------CAGCAA...........................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------GCAAC---------ATCAGCAG----------------------CAGCAA...........................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

CAA---------GC---------------------------------A-A--------------------CAG---CAGCAGCAGCAACAACAACAGCAGCAGCAAAAGAATTTCGGGGGCATACGCTTTAATTTGAATTTAAACCAAAAGCGTTTGGC------------------------------------------------------------------------------------------------------------------------------C---------GGTGGTCCCA--------------------------ATCCCCTGCAGCAGCAGCA--------------GCAA---C---------AA-----------------------------------------------CA---ACA---------ACAACAGC---------AGCAACAGCA----ACAACTTCAACAACTTCAACAAC---------------------AACAACATCATCAGC----------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................AGCAGCAAAAGAATTTCGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
...................................................................................AGCAACAACAACAGCAGCAGCAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................TTAAACCAAAAGCGTTTGGC------------------------------------------------------------------------------------------------------------------------------C---------GGTGG...................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................AAAAGAATTTCGGGGGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAACTTCAACAAC---------------------AACAACATC............................................................................	26	1	1.00	1	1	0	0	0	0	0	0
......................................................................................AACAACAACAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.20	4	0	0	0	0	0	4	0
........................................................................................................................................................................................................................................................................................................................................................GCAGCA--------------GCAA---C---------AA-----------------------------------------------CA---ACA---------ACAACAGC---------...............................................................................................................................................	26	7	0.14	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AGCA--------------GCAA---C---------AA-----------------------------------------------CA---ACA---------ACAACAGC---------...............................................................................................................................................	24	9	0.11	1	0	0	0	1	0	0	0
...................................................................................AGCAACAACAACAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC---------AGCAACAGCA----ACA..............................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0
..................................................................................CAGCAACAACAACAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------ACAACAGC---------AGCAACAGCA----.................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0
.................................................................................GCAGCAACAACAACAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0
...............................................................................CAGCAGCAACAACAACAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------------CA---ACA---------ACAACAGC---------AGCAACA........................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA--------------GCAA---C---------AA-----------------------------------------------C................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0	0
.....................................................................................CAACAACAACAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA--------------GCAA---C---------AA-----------------------------------------------CA---............................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................CTGCAGCAGCAGCA--------------GCAA---C---------..................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AGCA--------------GCAA---C---------AA-----------------------------------------------CA---ACA---------ACAAC...........................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................A---C---------AA-----------------------------------------------CA---ACA---------ACAACAGC---------AGC............................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................AA---C---------AA-----------------------------------------------CA---ACA---------ACAACAGC---------AGCA...........................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0

dmo_2262

scaffold_6654:752092-752242 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-41.8	-41.8	-41.5