dmo_2258

intron [Dmoj\GI16660-in]; exon [dmoj_GLEANR_17419:3]; CDS [Dmoj\GI16660-cds]; CDS [Dmoj\GI16660-cds]; exon [dmoj_GLEANR_17419:4]; intron [Dmoj\GI16660-in]

Name	Class	Family	Strand
R1_DYa	LINE	R1	+
(CTG)n	Simple_repeat	Simple_repeat	+

----##############################################------------------------------------------------------------------------------------------################################################## TCAGATTGCGATTGCGGCTGCGTGGACTCGTACAACAGCAGCAGCGTTGAGTTGCGGCACGGCCAGGCGCAGGCAGCGGCAGTAGCGGCAGCAGCAGCAGCGGCAGCGGCAGCAACAGCAGCAGCAGCAGCGGCTCACAACGTTGTGAGCCACAACAGCAGCAGCAGCAGCAGCGGCGGCAGCGGCGGCG *************************************************************..................(((((.((.((.((.((.((....((....))....)).)).)).)).)).))).))**************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	M060 embryo	V056 head	V041 embryo
..........................CTCGTACAACAGCAGCAGCGTTGAGTT.........................................................................................................................................	27	0	1	1.00	1	0	0	1	0	0
.....................GTGGACTCGTACAACAGCAGCAGC.................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
.......................................................................................................................................CACAACGTTGTGAGCCACAACA.................................	22	0	1	1.00	1	1	0	0	0	0
.............................GTACAACAGCAGCATCGTTGA............................................................................................................................................	21	1	1	1.00	1	0	1	0	0	0
.................................................................................................................AACAGCAGCAGCAGCAGCGGCTCAC....................................................	25	0	1	1.00	1	1	0	0	0	0
...............................................................CAGGCGCAGGCAGCGGCAGTAGCGGCA....................................................................................................	27	0	1	1.00	1	0	1	0	0	0
....................................................................GCAGGCAGCGGCAGTAGCG.......................................................................................................	19	0	1	1.00	1	0	1	0	0	0
...................................................................................................................................GGCTCAGAACGTCGTGAGAC.......................................	20	3	2	0.50	1	1	0	0	0	0
....................................................................................................................................GCTCAGAACGTCGTGAGACA......................................	20	3	2	0.50	1	0	1	0	0	0
...GATTCAGATAGCGGCTGCGT.......................................................................................................................................................................	20	3	4	0.25	1	0	0	0	1	0
.........................................................................................AGCAGCAGCAGCGGCAGCGGCAGCAACA.........................................................................	28	0	6	0.17	1	1	0	0	0	0
.....................................................................................................GGCAGCGGCAGCAACAGCAGC....................................................................	21	0	6	0.17	1	1	0	0	0	0
..................................................................................................AGCGGCAGCGGCAGCAACAGC.......................................................................	21	0	10	0.10	1	1	0	0	0	0
.......................................................................................................................................................................CAGCAGCGGCGGCAGCGGC....	19	0	20	0.10	2	0	0	2	0	0
....................................................................................GCGGCAGCAGCAGCAGCGGCAGCG..................................................................................	24	0	12	0.08	1	1	0	0	0	0
.............................................................................................................................................................GCAGCAGCAGCAGCAGCGGCGGCA.........	24	0	20	0.05	1	0	0	0	0	1
................................................................................................................CAACAGCAGCAGCAGCAGCGGC........................................................	22	0	20	0.05	1	0	0	1	0	0
................................................................................................................................................................GCAGCAGCAGCAGCGGCGG...........	19	0	20	0.05	1	1	0	0	0	0
...............................................................................TAGTAGCGGCAGCAGCAGCAGC.........................................................................................	22	1	20	0.05	1	0	0	1	0	0
...............................................................................CAGTAGCGGCAGCAGCCGCA...........................................................................................	20	1	20	0.05	1	0	0	0	0	1
.............................................................................................................................................................GCAGCAGCAGCAGCAGCGGCG............	21	0	20	0.05	1	1	0	0	0	0

AGTCTAACGCTAACGCCGACGCACCTGAGCATGTTGTCGTCGTCGCAACTCAACGCCGTGCCGGTCCGCGTCCGTCGCCGTCATCGCCGTCGTCGTCGTCGCCGTCGCCGTCGTTGTCGTCGTCGTCGTCGCCGAGTGTTGCAACACTCGGTGTTGTCGTCGTCGTCGTCGTCGCCGCCGTCGCCGCCGC **************************************************..................(((((.((.((.((.((.((....((....))....)).)).)).)).)).))).))*************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V049 head	M060 embryo
...................................................................................................................................CAGAGTGCTGCAAGACTCGG.......................................	20	3	2	0.50	1	1	0	0
..................................................................................................................................GCAGAGTGCTGCAAGACT..........................................	18	3	13	0.08	1	1	0	0
................................GTTTTCGACGTCGCAACACA..........................................................................................................................................	20	3	15	0.07	1	0	1	0
......................................................................................................................................................................CGTCGTCGCCGCCGTCGCCG....	20	0	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6654:603961-604150 -	dmo_2258	TCA---------GATTGC---------GA---T----------------TGCGGCTGC---GTGGACTCGTAC---------------------------------------------------AACAGCAGCAGCG--TTGAGTT------------GCG---GCACGGCCAGGCGCAGGC-A---------GCGGCA--GTAGCG---GCAGCA-GCA----GCAGC---------GGC----------------------------------------------------------AGCGG------C---AG---------------------CAACAGCAGCAGCAGC---------------AGCG----------------------------------------------G---CTCACAACGTTGTGAGCCACAACAGCAGCAG------CAGCAGCAGCGGCGGC-------------AGCG---GCGGCG--
droVir3	scaffold_13049:3408917-3409078 +		GTTGCCTTTGCAGATTGC---------GA---T----------------TGCGGCTGC---GTGGACTCGTAC---------------------------------------------------AACGGCGGCAGCG--TTGAGTT------------GCG---GCACGGCCAGGTACA------------------------GGCA----------GC-G---GC-------------------------------------------------------------------------AGCAG------T---GG------------------------------------CAGCAG------------------------------CAGCAGC---------GGCAGCCTCC----G---CTCAGAGCTTTGTGATC------AGCAGCA------------------GCAGC-------------AGCA---GCAGCCAC
droGri2	scaffold_271:1899-2079 -		GAT------------AGC---GTTTGCAGCAGC-------------------AGCAGC-------A--GCAGC---------------------------------G---------GCAGCAGCAGCAGCAGCAGCG------------GCAGCAGCAGCA-----------------------GCGGCAGCAGCAGCA--GCGGCAGCAGCAG--C---AGCAGCG----------------------------------------------------------GC------AGCAGCAGCAG------C---AG------------------------------------CAGCGGCAGCAGCAGCAGCA------------GCA------G------------------CG----C---CA-------------------GCAGCAGCGG------CAGCAGCAGCAGCAGC-------------AGCG---GCAGCA--
droWil2	scf2_1100000004941:322496-322685 +		TCG---------TATGGC---------GG---G-------------------------------------TACAGC-AGTGGCAGCGGG--------------------------------TGCAACGGCGGCAGCG---------------------------GTG-----------------------GTGGCAGCG--GGTACA---GCAG----T-G---GCATCGGGTGCAGCGGCGG-------------------------------------------TGGGTACAGCAGTGGCAG------C---GG------GT------------GCAGCAGTGGCAGCGGC---------------GGCAGGTACCGTAATGG---------------------------AT----GCGACA-------------------GCAGCGGCGG------CGGGTACAGCGGTGGC-------------AGCG---GCGGTG--
dp5	XR_group3a:802654-802859 -		TCG---------GACAGC---------GA---GGACG--AGGGCGGG-GA------CA---AT-----GGGGC---------------------------------------------------AACAACAGCGGCG---CC---AGTGA----AGCAGCGGGCGCATGCCCAGTCCCAGACGA---------GCAGCA--GT-------------------------CTGATGCAGCAGCAGCAGCAGCAGCAATCCTCTGT-------------------------------------GCCCCTGCATT---GC-------------------------------------CAGAG------------GA---------------GCAGCAAC---------CAGAG---CAACGTG---CA-------------------ACAGCAGCAG------CAACAGCAGCAGCAGC-------------AGCA---GCAGCA--
droPer2	scaffold_6:4062800-4062977 -		CCA---------AAAAGG-GC------GA---A--CTGGATGGCTTGAT-------------------GAAACAAC-ATC-----------------------------------------CCCATCTGG------------------------C---GCA---TCCCAGCCAAGTG-----------CAGCCGCAGCA--TTCACA---ACAGCA-GC-A---GCAGC---------AAC----------------------------------------------------------ATCCACAGCATC---AG---------------------------CAGCAGCAGC---------------AACA---CCCACAACAT---------------------------TC----G---CA-------------------GCACCAGCAG------CAGCAGCATCAGCATC-------------AGCA---GCAGCA--
droAna3	scaffold_13117:2340986-2341156 -		GCC--------A--GTGC---------GG---G--CG--TGGGCCGG-CG------------------CAACC----A-----------------------GCAGG---------------ATCAGCAACACCAGCC---CCTTCAGA------TGCAGCA---A---CACC-----------------A---GCAGCA--GC---A----------GC-A---GCAGCAGA------TGC----------------------------------------------------AGCAGCAGCAA------C---AAATGCAGCA---------------------------GC------------------A---------------GCAGCAAC---------AACAG---CA-ACAG---CTG----CA------------ACAACA---A------CAGCAGCAACTGCAGC---AGC-------AG-------------
droBip1	scf7180000396580:1192225-1192399 -		CAA-----------CTGC---------AA---C----------------------AGC---AGATGATCATGC---------------------------------------------------AACAGCAGCAACG------------GCAACAGCAGCT-----------------------GCCGCAAATGCAACA--GAGGCAGCAACAG--C---AGCAGGT----------------------------------------------------------TC------AGCGGCAAATG------C---AG------------------------------------CTACAGCAGCAACAACAACA------------GCT------G------------------CA----A---AT----------GGTGCAGCGACAGCA---G------CAGCAGCAGATGCAGG-------------TGCAGGTGCAGC---
droKik1	scf7180000301706:114061-114243 +		ATG--------G--CGGC---------T----------------------------GCAG----------TGCAGC-AGCAGCAGCAGCTACCTGGACACG-----G---------A----CACCAC-------------AGTGCGGC------GGCAGTG---GCG---GC-----------------TGCA---GTGCACCAGCA----------GC-A---GCAGCAGG------CGGCG-------------------------------------------C------------AACAG------CAGCAGCAGCAGGC---------------------------CC------------------A---------------GCAGCAACA--------GGCGG---CA----G---C-----------GGCG------CAACAGCAA------CATCAGCAGCAG------------GTGGCAGCC---GTTGCC--
droFic1	scf7180000452669:1045-1220 -		AAA--------A--CTAC---------GA---T--CGAGATGGCCGGACG------------------CAAACAGC---------------------------------------------------AGCACCAGCA---GCAACAGC------AGCAGCA---GCA---CC-----------------AGCAGCCGCA--GAAGCA----------GC-A---GCAGCAGAAGCAGCAGCAG-------------------------------------------C------------AGA------------AACAGCAGCA---------------------------CC------------------A---------------GCAGCCGC---------AGAAG---CA-GCAG---CA-------------------GCAGAAGCAG------CAGCAGCAGAAGCAGC-------------AGCA---GCAAAA--
droEle1	scf7180000490655:10638-10809 +		TCA--------G--CTTC---------AG---T----------------AGCGGCAGC------GA--TTAGT---------------------------------G---------GCATC---AGCCGCAGCAGCA-----------------------------------------------------TTAGCAGCA--GT--------------------------------------------------GATCCGCGGCAGCAGCACCAGCCGCAGCAGCACC------AGCCGCAGCAG------C---AC------------------------------------CAGCGG------------------------------CA---GCAGCATCAGCG-------CA----GCAGCA-------------------TCAGC-GCAGCAGCATCAGC-GCAGCAGCATC-------------AGC----GCAGCA--
droRho1	scf7180000777041:7390-7558 -		ATT--------G--CTGTT--------GT---C----------------TG---GTGC---ATGGA--CA-AC------------------------------------------------AGCAACAACAGCAGCA------ACAAC------AGCAGCA---GCA---AC-----------------AGCAGCAGCA--ACAACAGCAGCAG--C---AACAGCAGC---------AAC----------------------------------------------------------AACAG------C---AG------------------------------------CAACAG------------CA---------------GCAGCAAC---------AACAG---CA----GCAACA-------------------ACAGCAGCAG------CAGCAGCAACACCAAC-------------AACC---ACAGCA--
droBia1	scf7180000302402:3169067-3169254 -		TTG-----------CAGC---------TG---C----------------------TGCTGCGCAG---C---C----A-----------------------GCAACAGCAATACGAGCAGCAGCAACAGCAGCAGCA------GCA---ACACTAGCAGCA-----------------------GCAACAGCAGCAGCA--GCAACAACACCAG--C---AACAGCG----------------------------------------------------------------------------A------C---AG---------------------CAACAGCGACAGCAAC------------------A---------------GCAGCTAC---------GCCAG---CA----GCAACA-------------------GCAGCAGCAA------CAGCAGCAGCAGCGCC-------------AGCA---GCAGCA--
droTak1	scf7180000415394:417751-417929 +		GGC---------T---GC---------T-----------------------------------GGA--CAAACAACTAGTAGCAGTAATCACC----------------------------ATCACCACCACCATCA---------------CCAGCAGGA-----------------------TCAGTTGCA---G--------------CAGCA-GCA----GCAAC---------ATC----------------------------------------------------------AGCAG------T---T---------------------GCAGCAGCAGCAGCACC---------------AGCA------------G---TT---GCCCTACCAGCGACT----------G---CA-------------GCC---ACA--CGCAGCAGCAGCAGCGGCAGCTGTCG---------G-----CCAGCAAC-GCG--
droEug1	scf7180000408162:5844-6003 +		TAC---------AACAGC---------AG---C----------------------AGC---------------------------------------------------------------GTCAACAGCGGCAGCG------------ACGACAGCGGCA-----------------------GCGACGACAGCGGCA--GCGACGACAGCGG--C---AGCGACG----------------------------------------------------------AC------AGCGGCAGCGA------C---GA------------------------------------CAGCGG------------------------------CAGCGAC---------GACAGCGGCG----GCGACG-------------------ACAGCGGCAG------CGACAGCAGCGGCGGC-------------AACG---ACGACG--
dm3	chr2R:12249909-12250084 +		GATCCC------GACTGC---------GA---G----------------TG---CTCC---ATGGA--CGAAC---------------------------------------------------GACAGAAGCAGCAGATGGAACAGC------AGCAAAA---GCA---AC-----------------AGGA---CTGCA--TGCG---GCAGCA-GCA----GCAGC---------AGC----------------------------------------------------------AACAG------G---A---------------------GCACCAGAAGCAGCAGC---------------AACA----------------------------------------------G---CTC----CAATCTGAAC------AGCAACAG------GA-------TTG---CACCACCAAGCCACAGAC---GCAGGA--
droSim2	2r:12919345-12919520 +		CCT---------GATTGC---------GA---G----------------TG---CTCC---ATGGA--CGAAC---------------------------------------------------GACAGAAGCAGCAGATGGAACAGC------AGCAGAA---GCA---AC-----------------AGGA---CTGCA--TGCG---GCAGCA-GCA----GCTGC---------AGC----------------------------------------------------------AACAG------G---A---------------------GCACCAGAAGCAGCAGC---------------AACA----------------------------------------------G---CTC----CAATCTGAAC------AGCAACAG------GA-------CTGTGGCACCACCAAGCCACAGAC---GCAGGA--
droSec2	scaffold_138:52120-52274 -		CGA-----------CAGC---------GG---C----------------------AGC---------------------------------------------------------------AACGACAGCGGCAGCG------------ACGACAGCGGCA-----------------------GCGACGACAGCGGCA--GCGACGACAGCGG--C---AGCGACG----------------------------------------------------------AC------AGCGGCAGCGA------C---GA------------------------------------CAGC---------------G---------------GCAGCGAC---------GACAGCGGCA----G---CG-------------------ACGGCAGTGG------CAGCGGCAGCGACGGC-------------AGCG---GCAGCG--
droYak3	3L:6409487-6409649 -	dya_723	CAG---------T-ATTC---------GA---C----------------GCCGGCAGCAG--TTCACCCGCTC---------------------------------------------------AGCAGGAGCAACA--TGTGGCT------------GCG---G---TGCCAG-----------------------------AGCAG----------C-A---GCAGCAACTGCAGCAGCAG-------------------------------------------C------------AACAG------CAGCAGCAACAGCA---------------ACTGCAGCAGCAG------------------------------------------------------------CA----G---CA-------------------ACTGCAGCAG------CAGCAACAGCAGCAGC-------------AACA---GCAGCC--
droEre2	scaffold_4929:14033952-14034113 -		TTA--------A--TCGC---------AA---T--TT-----------------ATGT---GTCG---T---C----G-----------------------ACGTCGTCAACACGAGCCGACACGACAGCAGCAGCA---------------------------------GC-----------------A--------------GCAGCAGCAG----C-A---GCAGC------AGCAGCAG-------------------------------------------C------------AACAG------CAGCAGCAGCAGCAGCAGCAACAGCAG---------------------------------------------------------------------------CA----G---CA-------------------ACAGCAGCAG------CAGCAGCAGCAGCAGA-------------AGCA---GCAGCA--

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

TCA---------GATTGC---------GA---T----------------TGCGGCTGC---GTGGACTCGTAC---------------------------------------------------AACAGCAGCAGCG--TTGAGTT------------GCG---GCACGGCCAGGCGCAGGC-A---------GCGGCA--GTAGCG---GCAGCA-GCA----GCAGC---------GGC----------------------------------------------------------AGCGG------C---AG---------------------CAACAGCAGCAGCAGC---------------AGCG----------------------------------------------G---CTCACAACGTTGTGAGCCACAACAGCAGCAG------CAGCAGCAGCGGCGGC-------------AGCG---GCGGCG--	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................CTCGTAC---------------------------------------------------AACAGCAGCAGCG--TTGAGTT------------.........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
.............................................................GTGGACTCGTAC---------------------------------------------------AACAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACGTTGTGAGCCACAACA.........................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGC---------------AGCG----------------------------------------------G---CTCAC............................................................................	25	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................CAGGCGCAGGC-A---------GCGGCA--GTAGCG---GCA..................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................GCAGGC-A---------GCGGCA--GTAGCG---.....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................AGCA-GCA----GCAGC---------GGC----------------------------------------------------------AGCGG------C---AG---------------------CAACA.................................................................................................................................................................	28	6	0.17	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................GGC----------------------------------------------------------AGCGG------C---AG---------------------CAACAGCAGC............................................................................................................................................................	21	6	0.17	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................AGC---------GGC----------------------------------------------------------AGCGG------C---AG---------------------CAACAGC...............................................................................................................................................................	21	10	0.10	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCGGCGGC-------------AGCG---GC......	19	20	0.10	2	0	0	0	0	2	0
............................................................................................................................................................................................................GCG---GCAGCA-GCA----GCAGC---------GGC----------------------------------------------------------AGCG........................................................................................................................................................................................................	24	12	0.08	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAG------CAGCAGCAGCGGCGGC-------------A..............	24	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGC---------------AGCG----------------------------------------------G---C................................................................................	22	20	0.05	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG------CAGCAGCAGCGGCGG.............................	19	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAG------CAGCAGCAGCGGCG..............................	21	20	0.05	1	1	0	0	0	0	0

droVir3

GTTGCCTTTGCAGATTGC---------GA---T----------------TGCGGCTGC---GTGGACTCGTAC---------------------------------------------------AACGGCGGCAGCG--TTGAGTT------------GCG---GCACGGCCAGGTACA------------------------GGCA----------GC-G---GC-------------------------------------------------------------------------AGCAG------T---GG------------------------------------CAGCAG------------------------------CAGCAGC---------GGCAGCCTCC----G---CTCAGAGCTTTGTGATC------AGCAGCA------------------GCAGC-------------AGCA---GCAGCCAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................................................................ACA------------------------GGCA----------GC-G---GC-------------------------------------------------------------------------AGCAG------T---GG------------------------------------CA.....................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TGC---------GA---T----------------TGCGGCTGC---GTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGCTTTGTGATC------AGCAGCA------------------.................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGCTTTGTGATC------AGC.......................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATC------AGCAGCA------------------GCAGC-------------...............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................AGCG--TTGAGTT------------GCG---GCACGGC............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GA---T----------------TGCGGCTGC---GTGGACTCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................AC---------------------------------------------------AACGGCGGCAGCG--TTGAGTT------------GC.......................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCCTCC----G---CTCAGAGCTTTG.....................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCC----G---CTCAGAGCTTTGTGAT.................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCC----G---CTCAGAGCTTTGT....................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................GAGTT------------GCG---GCACGGCCAGGTAC.....................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................AG------T---GG------------------------------------CAGCAG------------------------------CAGCAGC---------G..................................................................................................	19	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------------GCAGC-------------AGCA---GCAGCCAC	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TC------AGCAGCA------------------GCAGC-------------AGCA---GCA.....	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------------GCAGC-------------AGCA---GCAGCC..	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA------------------GCAGC-------------AGCA---GCAGCCA.	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AGCAG------T---GG------------------------------------CAGCAG------------------------------CAGC...............................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GAT------------AGC---GTTTGCAGCAGC-------------------AGCAGC-------A--GCAGC---------------------------------G---------GCAGCAGCAGCAGCAGCAGCG------------GCAGCAGCAGCA-----------------------GCGGCAGCAGCAGCA--GCGGCAGCAGCAG--C---AGCAGCG----------------------------------------------------------GC------AGCAGCAGCAG------C---AG------------------------------------CAGCGGCAGCAGCAGCAGCA------------GCA------G------------------CG----C---CA-------------------GCAGCAGCGG------CAGCAGCAGCAGCAGC-------------AGCG---GCAGCA--	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................GTTTGCAGCAGC-------------------AGCAGC-------......................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	6	0.17	1	1	0
.............................................................................................................................................................................................................CAGCAGCAG--C---AGCAGCG----------------------------------------------------------GC------A.................................................................................................................................................................................................................	20	20	0.05	1	0	1
.......................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA------------GCA------G------------------CG----C---CA-------------------............................................................	22	20	0.05	1	1	0

droWil2

TCG---------TATGGC---------GG---G-------------------------------------TACAGC-AGTGGCAGCGGG--------------------------------TGCAACGGCGGCAGCG---------------------------GTG-----------------------GTGGCAGCG--GGTACA---GCAG----T-G---GCATCGGGTGCAGCGGCGG-------------------------------------------TGGGTACAGCAGTGGCAG------C---GG------GT------------GCAGCAGTGGCAGCGGC---------------GGCAGGTACCGTAATGG---------------------------AT----GCGACA-------------------GCAGCGGCGG------CGGGTACAGCGGTGGC-------------AGCG---GCGGTG--	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................TGCAACGGCGGCAGCG---------------------------GTG-----------------------G........................................................................................................................................................................................................................................................................................................................	20	20	0.20	4	0	4	0	0	0
..............TGGC---------GG---G-------------------------------------TACAGC-AGTGGCAGCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AT----GCGACA-------------------GCAGCGGCGG------CGG.........................................	21	20	0.10	2	0	2	0	0	0
..................................................................................................................................................................................................................................................G-------------------------------------------TGGGTACAGCAGTGGCAG------C---GG------.....................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0
................................................................................................................................GCGGCAGCG---------------------------GTG-----------------------GTGGCAGCG--G.............................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................ATGG---------------------------AT----GCGACA-------------------GCAGCGGCG...................................................	21	20	0.10	2	0	0	0	2	0
..............................................................................................................................................................................................................................................................................................................................................................................................TGG---------------------------AT----GCGACA-------------------GCAGCGGCGG------C...........................................	22	20	0.05	1	0	1	0	0	0
......................................................................................GGG--------------------------------TGCAACGGCGGCAGCG---------------------------G..................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................TG-----------------------GTGGCAGCG--GGTACA---GCAG----T-T---.......................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GCAGTGGCAGCGGC---------------GGCAGGA................................................................................................................................	21	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................GT------------GCAGCAGTGGCAGCGGC---------------GG.....................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..................................................................................CAGCGGG--------------------------------TGCAACGGCGGC..................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
.........................................................................................................................TGCAACGGCGGCAGCG---------------------------GTG-----------------------GTGG.....................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
................................G-------------------------------------TACAGC-AGTGGCAGCGGG--------------------------------T.............................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0
...................................................................................AGCGGG--------------------------------TGCAACGGCGGCAGCG---------------------------G..................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AGCAGTGGCAGCGGC---------------GGCAGGT................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................TG-----------------------GTGGCAGCG--GGTACA---GCAG----T-G---G......................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................ACAGCAGTGGCAG------C---GG------GT------------GCA....................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
....................................................................................................................................CAGCG---------------------------GTG-----------------------GTGGCAGCG--GGTACA---.....................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...................................................................................AGCGGG--------------------------------TGCAACGGCGGCAGT...............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
......................................................................TACAGC-AGTGGCAGCGGG--------------------------------TGCAACGT......................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
.................................................................................GCAGCGGG--------------------------------TGCAACGGCGGCC.................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..........................................................................................................................GCAACGGCGGCAGCG---------------------------GTG-----------------------GTG......................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCGG------CGGGTACAGCGGTGGC-------------AG.............	25	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------------------GCAGCGGCGG------CGGGTACAG...................................	21	20	0.05	1	0	1	0	0	0
.................C---------GG---G-------------------------------------TACAGC-AGTGGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................G---------------------------AT----GCGACA-------------------GCAGCGGCGG------CG..........................................	21	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................T----GCGACA-------------------GCAGCGGCGG------CGGGT.......................................	22	20	0.05	1	0	1	0	0	0
...................................................................................AGCGGG--------------------------------TGCAACGGCGGCAGC...............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0

dp5

TCG---------GACAGC---------GA---GGACG--AGGGCGGG-GA------CA---AT-----GGGGC---------------------------------------------------AACAACAGCGGCG---CC---AGTGA----AGCAGCGGGCGCATGCCCAGTCCCAGACGA---------GCAGCA--GT-------------------------CTGATGCAGCAGCAGCAGCAGCAGCAATCCTCTGT-------------------------------------GCCCCTGCATT---GC-------------------------------------CAGAG------------GA---------------GCAGCAAC---------CAGAG---CAACGTG---CA-------------------ACAGCAGCAG------CAACAGCAGCAGCAGC-------------AGCA---GCAGCA--	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................GA---GGACG--AGGGCGGG-GA------CA---AT-----GGGGC---------------------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	2
....................................................................................................................................CGGCG---CC---AGTGA----AGCAGCGGGCG..................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................CTGCATT---GC-------------------------------------CAGAG------------GA---------------GCAGCAAC---------C..................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................GA---------GCAGCA--GT-------------------------CTGATGCAGCA........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................AACAGCGGCG---CC---AGTGA----A............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.CG---------GACAGC---------GA---GGACG--AGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...............AGC---------GA---GGACG--AGGGCGGG-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CCCAGTCCCAGACGA---------GCAGC.................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................GA---------------GCAGCAAC---------CAGAG---CAACGTG---C................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................AATCCTCTGT-------------------------------------GCCCCTGCATT---GC-------------------------------------......................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................ATCCTCTGT-------------------------------------GCCCCTGCATT---GC-------------------------------------CAGA..................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................GC---------GA---GGACG--AGGGCGGG-GA------CA---AT-----GGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................................................GCAGCA--GT-------------------------CTGATGCAGCAGC......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAG------CAACAGCAGCAGCAGC-------------...............	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------CAACAGCAGCAGCAGC-------------AGC............	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------ACAGCAGCAG------CAACAGCAGCA.................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0

droPer2

CCA---------AAAAGG-GC------GA---A--CTGGATGGCTTGAT-------------------GAAACAAC-ATC-----------------------------------------CCCATCTGG------------------------C---GCA---TCCCAGCCAAGTG-----------CAGCCGCAGCA--TTCACA---ACAGCA-GC-A---GCAGC---------AAC----------------------------------------------------------ATCCACAGCATC---AG---------------------------CAGCAGCAGC---------------AACA---CCCACAACAT---------------------------TC----G---CA-------------------GCACCAGCAG------CAGCAGCATCAGCATC-------------AGCA---GCAGCA--	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

GCC--------A--GTGC---------GG---G--CG--TGGGCCGG-CG------------------CAACC----A-----------------------GCAGG---------------ATCAGCAACACCAGCC---CCTTCAGA------TGCAGCA---A---CACC-----------------A---GCAGCA--GC---A----------GC-A---GCAGCAGA------TGC----------------------------------------------------AGCAGCAGCAA------C---AAATGCAGCA---------------------------GC------------------A---------------GCAGCAAC---------AACAG---CA-ACAG---CTG----CA------------ACAACA---A------CAGCAGCAACTGCAGC---AGC-------AG-------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................................................................................................................AGCAA------C---AAATGCAGCA---------------------------GC------------------A---------------GC..................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AGCAA------C---AAATGCAGCA---------------------------GC------------------A---------------GCA.................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................GCA--GC---A----------GC-A---GCAGCAGA------TGC----------------------------------------------------AGCA..............................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	1	0
............................................................................................................................................................CAGCA---A---CACC-----------------A---GCAGCA--GC---A----------GC-A---GC.....................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	1	0	0	0	0
...........................................................................................................................................................GCAGCA---A---CACC-----------------A---GCAGCA--GC---A----------GC-...........................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0
...............................................................................................................................................................CA---A---CACC-----------------A---GCAGCA--GC---A----------GC-A---GC.....................................................................................................................................................................................................................................................................................	22	13	0.08	1	0	1	0	0	0	0
.........................................................................................................................................................................................................GC---A----------GC-A---GCAGCAGA------TGC----------------------------------------------------A.................................................................................................................................................................................................................	18	17	0.06	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................CAGCA---------------------------GC------------------A---------------GCAGCAAC---------AACAG---CA-ACAG---.................................................................................	27	17	0.06	1	1	0	0	0	0	0
...............................................................................................................................................................CA---A---CACC-----------------A---GCAGCA--GC---A----------GC-A---G......................................................................................................................................................................................................................................................................................	21	17	0.06	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AGCA---------------------------GC------------------A---------------GCAGCAAC---------AACAG---CA-ACA.....................................................................................	25	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................CACC-----------------A---GCAGCA--GC---A----------GC-A---GCAGC..................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................A---------------------------GC------------------A---------------GCAGCAAC---------AACAG---CA-ACAG---C................................................................................	24	20	0.05	1	0	1	0	0	0	0
....................................................................................................................................................................A---CACC-----------------A---GCAGCA--GC---A----------GC-A---GC.....................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
..............................................................................................................................................................GCA---A---CACC-----------------A---GCAGCA--GC---A----------GC-...........................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................CACC-----------------A---GCAGCA--GC---A----------GC-A---GCAGCA.................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AGCA---------------------------GC------------------A---------------GCAGCAAC---------AACAG---CA-AC......................................................................................	24	20	0.05	1	0	1	0	0	0	0

droBip1

CAA-----------CTGC---------AA---C----------------------AGC---AGATGATCATGC---------------------------------------------------AACAGCAGCAACG------------GCAACAGCAGCT-----------------------GCCGCAAATGCAACA--GAGGCAGCAACAG--C---AGCAGGT----------------------------------------------------------TC------AGCGGCAAATG------C---AG------------------------------------CTACAGCAGCAACAACAACA------------GCT------G------------------CA----A---AT----------GGTGCAGCGACAGCA---G------CAGCAGCAGATGCAGG-------------TGCAGGTGCAGC---	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATG--------G--CGGC---------T----------------------------GCAG----------TGCAGC-AGCAGCAGCAGCTACCTGGACACG-----G---------A----CACCAC-------------AGTGCGGC------GGCAGTG---GCG---GC-----------------TGCA---GTGCACCAGCA----------GC-A---GCAGCAGG------CGGCG-------------------------------------------C------------AACAG------CAGCAGCAGCAGGC---------------------------CC------------------A---------------GCAGCAACA--------GGCGG---CA----G---C-----------GGCG------CAACAGCAA------CATCAGCAGCAG------------GTGGCAGCC---GTTGCC--	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAA--------A--CTAC---------GA---T--CGAGATGGCCGGACG------------------CAAACAGC---------------------------------------------------AGCACCAGCA---GCAACAGC------AGCAGCA---GCA---CC-----------------AGCAGCCGCA--GAAGCA----------GC-A---GCAGCAGAAGCAGCAGCAG-------------------------------------------C------------AGA------------AACAGCAGCA---------------------------CC------------------A---------------GCAGCCGC---------AGAAG---CA-GCAG---CA-------------------GCAGAAGCAG------CAGCAGCAGAAGCAGC-------------AGCA---GCAAAA--	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCA--------G--CTTC---------AG---T----------------AGCGGCAGC------GA--TTAGT---------------------------------G---------GCATC---AGCCGCAGCAGCA-----------------------------------------------------TTAGCAGCA--GT--------------------------------------------------GATCCGCGGCAGCAGCACCAGCCGCAGCAGCACC------AGCCGCAGCAG------C---AC------------------------------------CAGCGG------------------------------CA---GCAGCATCAGCG-------CA----GCAGCA-------------------TCAGC-GCAGCAGCATCAGC-GCAGCAGCATC-------------AGC----GCAGCA--	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATT--------G--CTGTT--------GT---C----------------TG---GTGC---ATGGA--CA-AC------------------------------------------------AGCAACAACAGCAGCA------ACAAC------AGCAGCA---GCA---AC-----------------AGCAGCAGCA--ACAACAGCAGCAG--C---AACAGCAGC---------AAC----------------------------------------------------------AACAG------C---AG------------------------------------CAACAG------------CA---------------GCAGCAAC---------AACAG---CA----GCAACA-------------------ACAGCAGCAG------CAGCAGCAACACCAAC-------------AACC---ACAGCA--	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTG-----------CAGC---------TG---C----------------------TGCTGCGCAG---C---C----A-----------------------GCAACAGCAATACGAGCAGCAGCAACAGCAGCAGCA------GCA---ACACTAGCAGCA-----------------------GCAACAGCAGCAGCA--GCAACAACACCAG--C---AACAGCG----------------------------------------------------------------------------A------C---AG---------------------CAACAGCGACAGCAAC------------------A---------------GCAGCTAC---------GCCAG---CA----GCAACA-------------------GCAGCAGCAA------CAGCAGCAGCAGCGCC-------------AGCA---GCAGCA--	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGC---------T---GC---------T-----------------------------------GGA--CAAACAACTAGTAGCAGTAATCACC----------------------------ATCACCACCACCATCA---------------CCAGCAGGA-----------------------TCAGTTGCA---G--------------CAGCA-GCA----GCAAC---------ATC----------------------------------------------------------AGCAG------T---T---------------------GCAGCAGCAGCAGCACC---------------AGCA------------G---TT---GCCCTACCAGCGACT----------G---CA-------------GCC---ACA--CGCAGCAGCAGCAGCGGCAGCTGTCG---------G-----CCAGCAAC-GCG--	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TAC---------AACAGC---------AG---C----------------------AGC---------------------------------------------------------------GTCAACAGCGGCAGCG------------ACGACAGCGGCA-----------------------GCGACGACAGCGGCA--GCGACGACAGCGG--C---AGCGACG----------------------------------------------------------AC------AGCGGCAGCGA------C---GA------------------------------------CAGCGG------------------------------CAGCGAC---------GACAGCGGCG----GCGACG-------------------ACAGCGGCAG------CGACAGCAGCGGCGGC-------------AACG---ACGACG--	Size	Hit Count	Total Norm	Total
No Reads

dm3

GATCCC------GACTGC---------GA---G----------------TG---CTCC---ATGGA--CGAAC---------------------------------------------------GACAGAAGCAGCAGATGGAACAGC------AGCAAAA---GCA---AC-----------------AGGA---CTGCA--TGCG---GCAGCA-GCA----GCAGC---------AGC----------------------------------------------------------AACAG------G---A---------------------GCACCAGAAGCAGCAGC---------------AACA----------------------------------------------G---CTC----CAATCTGAAC------AGCAACAG------GA-------TTG---CACCACCAAGCCACAGAC---GCAGGA--	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................GAAC---------------------------------------------------GACAGAAGCAGCAGATGGAACA.....................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------AGCAACAG------GA-------TTG---CACCA........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................G---A---------------------GCACCAGAAGCAGCAGC---------------.......................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GATCCC------GACTGC---------GA---G----------------TG---CTCC---A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CCC------GACTGC---------GA---G----------------TG---CTCC---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAGCCACAGAC---GCAGGA--	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................................................................................................................................GCAGC---------AGC----------------------------------------------------------AACAG------G---A---------------------GCA....................................................................................................................................................................	18	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................A----GCAGC---------AGC----------------------------------------------------------AACAG------G---A---------------------GC.....................................................................................................................................................................	18	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CA----GCAGC---------AGC----------------------------------------------------------AACAG------G---A---------------------G......................................................................................................................................................................	18	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CA-GCA----GCAGC---------AGC----------------------------------------------------------AACAG------G---.............................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................AGCA-GCA----GCAGC---------AGC----------------------------------------------------------AACAG------.................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................CAGCA-GCA----GCAGC---------AGC----------------------------------------------------------AA..........................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................GCG---GCAGCA-GCA----GCAGC---------AGC----------------------------------------------------------A...........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................CAGCA-GCA----GCAGC---------AGC----------------------------------------------------------AACA........................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CCT---------GATTGC---------GA---G----------------TG---CTCC---ATGGA--CGAAC---------------------------------------------------GACAGAAGCAGCAGATGGAACAGC------AGCAGAA---GCA---AC-----------------AGGA---CTGCA--TGCG---GCAGCA-GCA----GCTGC---------AGC----------------------------------------------------------AACAG------G---A---------------------GCACCAGAAGCAGCAGC---------------AACA----------------------------------------------G---CTC----CAATCTGAAC------AGCAACAG------GA-------CTGTGGCACCACCAAGCCACAGAC---GCAGGA--	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................GC---------GA---G----------------TG---CTCC---ATGGA--CG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................A-GCA----GCTGC---------AGC----------------------------------------------------------AAC.........................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CGA-----------CAGC---------GG---C----------------------AGC---------------------------------------------------------------AACGACAGCGGCAGCG------------ACGACAGCGGCA-----------------------GCGACGACAGCGGCA--GCGACGACAGCGG--C---AGCGACG----------------------------------------------------------AC------AGCGGCAGCGA------C---GA------------------------------------CAGC---------------G---------------GCAGCGAC---------GACAGCGGCA----G---CG-------------------ACGGCAGTGG------CAGCGGCAGCGACGGC-------------AGCG---GCAGCG--	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

CAG---------T-ATTC---------GA---C----------------GCCGGCAGCAG--TTCACCCGCTC---------------------------------------------------AGCAGGAGCAACA--TGTGGCT------------GCG---G---TGCCAG-----------------------------AGCAG----------C-A---GCAGCAACTGCAGCAGCAG-------------------------------------------C------------AACAG------CAGCAGCAACAGCA---------------ACTGCAGCAGCAG------------------------------------------------------------CA----G---CA-------------------ACTGCAGCAG------CAGCAACAGCAGCAGC-------------AACA---GCAGCC--	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................................................................................................................................CAG-----------------------------AGCAG----------C-A---GCAGCAACTGCA...........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................C---------------------------------------------------AGCAGGAGCAACA--TGTGGCT------------GCG---G---TGCC...........................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CAGCAACAGCAGCAGC-------------AACA---GCAGC...	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGC-------------AACA---........	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AGCAGCAG------------------------------------------------------------CA----G---CA-------------------ACTGCAGCAG------CA..........................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................CAG----------C-A---GCAGCAACTGCAGCAGC......................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AG-------------------------------------------C------------AACAG------CAGCAGCAACA......................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AGCAG----------C-A---GCAGCAACTGCAGCAGCA.....................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................CAGCAG------------------------------------------------------------CA----G---CA-------------------ACTGCAGCAG------C...........................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TTA--------A--TCGC---------AA---T--TT-----------------ATGT---GTCG---T---C----G-----------------------ACGTCGTCAACACGAGCCGACACGACAGCAGCAGCA---------------------------------GC-----------------A--------------GCAGCAGCAG----C-A---GCAGC------AGCAGCAG-------------------------------------------C------------AACAG------CAGCAGCAGCAGCAGCAGCAACAGCAG---------------------------------------------------------------------------CA----G---CA-------------------ACAGCAGCAG------CAGCAGCAGCAGCAGA-------------AGCA---GCAGCA--	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................................GCAG-------------------------------------------C------------AACAG------CAGCAGCAGC.......................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0
..............................................................................................................................................................................................................................................AGCAG-------------------------------------------C------------AACAG------CAGCAGCAGC.......................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAG---------------------------------------------------------------------------CA----G---CA-------------------ACAGCAGCAG------C...........................................	29	20	0.05	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................G---CA-------------------ACAGCAGCAG------CAGCAG......................................	19	20	0.05	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................C------AGCAGCAG-------------------------------------------C------------AACAG------CAGC.............................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGA-------------AGCA---GCA.....	19	20	0.05	1	0	0	0	1	0	0	0

dmo_2258

scaffold_6654:604011-604100 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-26.4	-25.6