ID:

dmo_2256

 Coordinate:

scaffold_6654:599186-599248 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.2 -7.4

Flybase annnotation

exon [dmoj_GLEANR_17419:10]; CDS [Dmoj\GI16660-cds]; exon [dmoj_GLEANR_17419:11]; CDS [Dmoj\GI16660-cds]; intron [Dmoj\GI16660-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_6540:4677037-4677058 +
  2. scaffold_6540:20024854-20024875 -
  3. dmo_2256  scaffold_6654:599217-599238 -
star
  1. scaffold_6308:131580-131600 -
  2. scaffold_6308:2998166-2998186 -
  3. scaffold_6359:2563231-2563251 -
  4. scaffold_6473:1068569-1068589 -
  5. scaffold_6473:2958682-2958702 -
  6. scaffold_6473:10696958-10696978 -
  7. scaffold_6473:14044796-14044816 -
  8. scaffold_6496:7279052-7279072 -
  9. scaffold_6500:2471059-2471079 -
  10. scaffold_6500:2471086-2471106 -
  11. scaffold_6500:18621535-18621555 -
  12. scaffold_6540:2041019-2041039 -
  13. scaffold_6540:6646815-6646835 -
  14. scaffold_6540:18976404-18976424 -
  15. scaffold_6540:19829476-19829496 -
  16. scaffold_6540:19830546-19830566 -
  17. scaffold_6540:20287930-20287950 -
  18. scaffold_6540:29392065-29392085 -
  19. dmo_2256  scaffold_6654:599189-599209 -
  20. scaffold_6680:9715355-9715375 -

Sense Strand Reads

##################################################---------------------------------------------------------------##################################################
TGGCCATGGCTCAGAGCGAGTGCAACTATCAGCCGCAGCCGCCGCCGCAGGTGCAGATACAAGTGCAACAGCAACAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCCGCCGCCTGTGGCCAGCCTGCCGCATATTCCAACCAAGCAGGAGCCAGC
************************************************************...((..............((.((....)).))..............)).***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
 V049
head
 V110
male body		 V056
head
 V041
embryo
..........................................................................................................GCAGCAGCCGCCGCCTGTGGAC................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................GCAGCAGCAGCCGCCGCCTGTGGCC................................... 25 0 1 1.00 1 1 0 0 0 0 0
..........................TATCAGCCGCAGCCGCCGCC..................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
.................................................................................................ACAGCAGCAGCAGCAGCCGCCGCCTGTG...................................... 28 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................TGCAGCAGCCGCCGCCTGTGGCC................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........TCAGAGCGAGTGCAACTATCAGCCGC............................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0
..........................................................................................................GCAGCAGCCGCCGCCTGTGGCC................................... 22 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................GCAGCAGCAGCCGCCGCCTGTG...................................... 22 0 2 0.50 1 1 0 0 0 0 0
..........................TATCAGACGGAGCCGCCGGCGC................................................................................................................... 22 3 3 0.33 1 0 0 0 0 1 0
............................................................AAGTGCAACAGCAACAGCAGCA................................................................................. 22 0 3 0.33 1 0 1 0 0 0 0
TGATCCTGGCTCAGAGCGA................................................................................................................................................ 19 3 20 0.15 3 0 3 0 0 0 0
.........................................................................................CAGCAACAACAGCAGCAGCAG..................................................... 21 0 20 0.15 3 0 3 0 0 0 0
................................................................................................AACAGCAGCAGCAGCAGCCGCCGC........................................... 24 0 7 0.14 1 1 0 0 0 0 0
..........................................................................CAGCAGCAGCAGCAGCAGCA..................................................................... 20 0 20 0.10 2 0 0 0 0 0 2
...............................................................TGCAACAGCAACAGCAGCAGCA.............................................................................. 22 0 20 0.05 1 0 0 0 0 1 0
............................................................................................CAACAACAGCAGCAGCAGCAGCC................................................ 23 0 20 0.05 1 1 0 0 0 0 0
....................................................................................AGCAGCAGCAACAACAGCA............................................................ 19 0 20 0.05 1 0 1 0 0 0 0
..............................................................................AGCAGCAGCAGCAGCAACAACAGCAGCA......................................................... 28 0 20 0.05 1 0 0 0 0 0 1
..................................................................................GCAGCAGCAGCAACAACA............................................................... 18 0 20 0.05 1 1 0 0 0 0 0
................................................................................CAGCAGCAGCAGCAACAACAGCAGCA......................................................... 26 0 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

ACCGGTACCGAGTCTCGCTCACGTTGATAGTCGGCGTCGGCGGCGGCGTCCACGTCTATGTTCACGTTGTCGTTGTCGTCGTCGTCGTCGTCGTTGTTGTCGTCGTCGTCGTCGGCGGCGGACACCGGTCGGACGGCGTATAAGGTTGGTTCGTCCTCGGTCG
*****************************************************...((..............((.((....)).))..............)).************************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6654:599136-599298 - dmo_2256 TGGCCA----TG------------GCTCAGAGCGAGTGC----------------------------AA---------------------------------------CTATCAGCCGCAG---------CCGCCGCCGC---------A-GG---TGCAGATACAAGTGCAACAGCAACAG---------------CAGCAGCAGCA---GCAGCAACAACAGCAGCAGCAGCAG------CCGC----CGCCT---GTGG-----------------------------------CCAGCCTGCC-GCATATTCCAA-----CCAAGCAG---G---AGC---CAGC
droVir3 scaffold_13049:3413735-3413861 + TGGCCA----TG------------GCCCAAAGCGAGTGC----------------------------AA---------------------------------------CTATCAGCCGCAG---------CCG------C----------------------AGGTG---------------------------------------CAGATACAGGTGCAACAGCAGCAGGCACCG------CCGC----CGCCC---GTTA-----------------------------------CCAGTCTGCC-GCATATTCCAA-----CCAAACAG---G---AGC---CGCC
droGri2 scaffold_15110:7597926-7598058 + TGGCCA----TG------------GCCCAAAGCGAGTGC----------------------------AA---------------------------------------CTATCAGCCGCAG---------CCA---CAGC----------------------AGGTGCAGATACAAGTACA------------------------------------GCAACAGCAGCAGCCACCG------CCAC----CGCCC---GTCG-----------------------------------TCAGTTTGCC-GCATATACCCA-----CTAAGCAG---G---AAC---CACC
droWil2 scf2_1100000003625:818-971 + AACA-A----TG------------GCA----GCAACAAC----------------------------AA----CAGCAACAACAACTGCAGCAGCAACA------------ACAACAGCAG---------CAACAACAAC-------------------AGCAG---------------------------------CAGCAACAACAGCAACAGGAACAACAACAGCAGCAGCAA------CAAC----AACAA---CA-----GCAGCAGCAACTGCAACAAC------------------------------------------AGCAG---C---AGC---AACA
dp5 XL_group3a:1803534-1803702 - TGGCCA----CC-----------------AAGCAACAGC----------------------------A----------------------------------------GCAACAGCAGCAA---------------------CAACAGCA-GCAACAACAGCAGCAGCAACAGCAGCAACAA---------CAACAGCAGCAACAGCA---GCAGCAACAACAGCAGCAGCAGCAG------CAGGCGGCGGCCAATTGCCAGGCGCAGCAGCAGCAGCAACAAC------------------------------------------AGCAA---C---AGC---TAGC
droPer2 scaffold_5:813587-813738 - GCAACA------------------------------------------------------------------------------------------------------GCAGCAGCAGCAA---------------------CAACAGCA-GC---AACAGCAGCAGCAGCAACAACAACAG---------------CAGCAGCAACAGCAGCAG---CAACAGCAGCAGCAACAA------CAGC----AG-----------------------CAGCAGCAACAGCAGTCGATGGCAGG---GCC-ACAGAACCTCA-----CGGGAGAG---GA--GCC---AG--
droAna3 scaffold_13248:2270679-2270816 - dan_4064 GCA--------------------------GAGCAGGAGC----------------------------GA----CG---------------------------------GCAGCAGCAGCAG---------------------CCACAGCA-GC---AACAGCAGCAGCAGCAACAGCAACAG---------------CAACAGCAACAGCAGCAG---CAACAGCAGCAGCAACAG---CAGCAGC----AGCCA--------------------CAGCAGCA---------------------------------------------GCAA---CAGCAGCAACGA--
droBip1 scf7180000395553:7876-8041 - TGGTCG----CCATGCCCAGCCAGGTT----------GCAACCAGCACCGGAAATCCAGT--ATCACCGCT-------------------------CCA---------GCAACAACAGCAA---------------------------CA-CC---AACAGCAGCAGCAGCAACAGCAACAGCAGCAG---------CAACAGCAACAGCAGCAGGC---ACAGCAACAGCAGCAG------G---------------------------------CACAGCAACA------------------------------------------GCAG---C---AGG---CACA
droKik1 scf7180000302685:196474-196623 + CAGCAA----CA------------TCT----------AC----------------------------AG----CA---GCAACAGCAGCAGCATCATCTACAG---------CAGCAGC------------AGCATCTAC-------------------AGCAACAGCAGCATCTACAGCAG---------------CAGCAGCAGCA---GCAGCATCTACAGCAGCAGCAGCAG------CAGC----AGC-----------------------AGCATCATC---------------------------------------TCCAGCAGCAGC---AGC---AA--
droFic1 scf7180000453906:611025-611187 + CCACCT----CG------------CCGCAGGGCCA---------------------------------C----CT---------------------------------GCAACAGCAGCA----------------------------------------GCAGCAGCAACAACAGCAGCAGCAGCAGCAACACCAGCAACATCAGCAGCAGCAA---CACCAGCAGCTGCAGCAG---CAACAGC----AGCCAATTGCGA-----------------------------------ACAGCTCGTCGGCAGCTTCCAG-----TGGAGCGG---GC--AGC---AG--
droEle1 scf7180000491080:2493732-2493893 - TGGCCAAGGAGG------------CCGCCGAGCAGCAGC----------------------------AG----CA---GCAACAGCAGCAGCAACAACAACAG---------CAGCAGC------------AGCAGCAAC-------------------AGCAGCAG------------------------------CAGCAGCA---------------------GCAGCAGCAG------GAGC----AGCAA---CG-----TCGCTTCGAGCAGGAGCAACA---------------GGAGCA-GCAGCGACGCA-----AGGAGGAG---C---AAC----AGC
droRho1 scf7180000779636:42077-42228 + CGTGAA----TG------------CCTCCATACAGTTGC----------------------------AT-------------------------------------------------CAACAGCAGCAGCAG------CAGCCGC---A-GA---TCAGGGAACGCGAGCACCACCAACAG---------------CCGCAGCAGCA---GCAGCAACAACAGCAGCAGCAGCAG------TTGC----AGCC-----------GCAGATGCAGCAGCAACAAC------------------------------------------AGCAG---C---AGC---A-GC
droBia1 scf7180000301468:613355-613515 - TCGCCA----TC------------C--CAGTGCC---------------GTGAGTCCGG-------------------------------------------------TCAGCTCCCTCAA---------------------CCACTCCATGA---TGCAGCAGATGCAGCAGCAGCAGCAG---------------CAACAGCA------ACAGCAGCAACAGCAGCAGCAGCAA------CACC--ACCAGCT---GAGC-------CCCCCGCCGCA----------------------------TGGAATGCCCT-----C-GGGCAA---T---GGC---CTGC
droTak1 scf7180000415151:492929-493072 + GGCC-T----CG------------C------CCACCA-----------------------------------------------------------------------GCAACCTCCTCTA---------------------CGCCGCCCAGATGCAACAGCAGCAGCAGCAACATCAACAG---------------CA------------GCAGCAACAACAGCAGCAGCAGCTGGCC---TCCC-TGTATCCC---GCTT------TCTACTACAGCAACA-----------------------------------------TCAAGCAG---G---AGC---AGGC
droEug1 scf7180000409462:2907171-2907331 - TCAAAA----TG------------ATTTCGATCTC--------------------------------AAGCGTCT---------------------------------GCAGCAGCAGCA------------GGCCA------------T-GC---AGCAGCAGCAACAGCAACAACAACAG---------------CAGCAGCAGCAACAACAACACCATCAGCAGCAGCAGCAG------CAGC----AACCCAAAATGG-----------------------------------GAGGTGTGCC-C--------AACTTCAATAAGCAA---C---AGC---A-GC
dm3 chrX:11250712-11250863 + TGGGCA----TG------------GGTCTGACCAACAGG----------------------------AA---------------------------------------GCTACAGCAGCAACAGCA---------G------------CA-GC---ATCAGCAGCAGCAACAACAACAGCAG---------------CAGCAGCACCAGCAACAGCAACAACAACAGCAGCAGCAG------GTGC----AGCCT---GT-----CCAGCTGGCGCAGCAGCAACA------------------------------------------GCAG---C---------AG--
droSim2 x:10675775-10675926 + TGGGCA----TG------------GGTCTGACCAACAGG----------------------------AA---------------------------------------GCTGCAGCAGCAACAGCA---------G------------CA-GC---ATCAGCAGCAACAGCAGCAACAACAG---------------CAACAGCACCAGCAGCAAGTCCAACAGCAGCAGCAGCAG------GTGC----AGCCT---GT-----CCAGCTGGCGCAGCAGCAACA------------------------------------------GCAG---C---------AG--
droSec2 scaffold_15:1928150-1928301 + TGGGCA----TG------------GGTCTGACCAACAGG----------------------------AA---------------------------------------GCTACAGCAGCAACAGCA---------G------------CA-GC---ATCAGCAGCAACAGCAGCAACAACAG---------------CAACAGCACCAGCAGCAGGTCCAACAGCAGCAGCAGCAG------GTGC----AGCCT---GT-----CCAGCTGGCGCAGCAGCAACA------------------------------------------GCAG---C---------AG--
droYak3 X:19160881-19161045 + TGCGGG----TG------------GGTCGAAG----------------------TCCAGTTAATCGCAGCTTTCC---------------------ACAGCAGCAGCAGCAG------------------------------------CA-GC---AACAGCAACAGCAGCAACAGCAGCAG---------------CAGCAGCAGCA---GCAGCAGCAACAGCAGCAGCAACAG------CAGC----AGC-----------------------AACAGCAACA------------------TCA-GCAGATTCCAA-----CT-GCCAG---G---AGC---AATC
droEre2 scaffold_4690:4535910-4536059 - TGCGGG----TG------------GGTCGGAG----------------------TCCAGTTAACCGCAGCTTTCC---------------------------------ACAACAGCAGCAG---------------------------C-------AACAGCAGCAGCAG---------CAG---CCACAG------CAGCAGCC------ACAGCAACAGCAACAGCAGCAGCAG------CTGC------------------------------AGCAGCAACT------------------GCA-GCAGATTCCAA-----CT-GCCAG---G---AGC---AATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TGGCCA----TG------------GCTCAGAGCGAGTGC----------------------------AA---------------------------------------CTATCAGCCGCAG---------CCGCCGCCGC---------A-GG---TGCAGATACAAGTGCAACAGCAACAG---------------CAGCAGCAGCA---GCAGCAACAACAGCAGCAGCAGCAG------CCGC----CGCCT---GTGG-----------------------------------CCAGCCTGCC-GCATATTCCAA-----CCAAGCAG---G---AGC---CAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................GCAGCAGCAG------CCGC----CGCCT---GTGG-----------------------------------CC..................................................2511.001000010
.............................................................................................................TATCAGCCGCAG---------CCGCCGCC...................................................................................................................................................................................................................2011.001001000
............................................................................................................................................................................................................................ACAGCAGCAGCAGCAG------CCGC----CGCCT---GTG........................................................................................2811.001100000
..........................TCAGAGCGAGTGC----------------------------AA---------------------------------------CTATCAGCCGC......................................................................................................................................................................................................................................2611.001000001
.....................................................................................................................................................................................................................................GCAGCAG------CCGC----CGCCT---GTGG-----------------------------------CC..................................................2211.001000010
..................................................................................................................................................................................................................................GCAGCAGCAG------CCGC----CGCCT---GTG........................................................................................2220.501000010
.....................................................................................................................................................................AAGTGCAACAGCAACAG---------------CAGCA...................................................................................................................................................2230.331100000
....................................................................................................................................................................................................................CAGCAACAACAGCAGCAGCAG....................................................................................................................21200.153300000
...........................................................................................................................................................................................................................AACAGCAGCAGCAGCAG------CCGC----CGC................................................................................................2470.141000010
...................................................................................................................................................................................CAG---------------CAGCAGCAGCA---GCAGCA....................................................................................................................................20200.102020000
........................................................................................................................................................................TGCAACAGCAACAG---------------CAGCAGCA................................................................................................................................................22200.051000100
.......................................................................................................................................................................................................................CAACAACAGCAGCAGCAGCAG------CC.........................................................................................................23200.051000010
............................................................................................................................................................................................................AGCA---GCAGCAACAACAGCA...........................................................................................................................19200.051100000
......................................................................................................................................................................................................AGCAGCAGCA---GCAGCAACAACAGCAGCA........................................................................................................................28200.051010000
..........................................................................................................................................................................................................GCAGCA---GCAGCAACAACA..............................................................................................................................18200.051000010
........................................................................................................................................................................................................CAGCAGCA---GCAGCAACAACAGCAGCA........................................................................................................................26200.051000100
droVir3
TGGCCA----TG------------GCCCAAAGCGAGTGC----------------------------AA---------------------------------------CTATCAGCCGCAG---------CCG------C----------------------AGGTG---------------------------------------CAGATACAGGTGCAACAGCAGCAGGCACCG------CCGC----CGCCC---GTTA-----------------------------------CCAGTCTGCC-GCATATTCCAA-----CCAAACAG---G---AGC---CGCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................G---------CCG------C----------------------AGGTG---------------------------------------CAGATACAGGTG...................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
...............................GCGAGTGC----------------------------AA---------------------------------------CTATCAGCCGC......................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ATATTCCAA-----CCAAACAG---G---A.........1911.001001000000000000000000000000000000000000000000000000000000000000
.....A----TG------------GCCCAAAGCGAGTGC----------------------------AA---------------------------------------CT...............................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
.....A----TG------------GCCCAAAGCGAGTGC----------------------------A.........................................................................................................................................................................................................................................................................................1911.001000000000000000010000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................AGCAGGCACCG------CCGC----CGCCC---GT.........................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
droGri2
TGGCCA----TG------------GCCCAAAGCGAGTGC----------------------------AA---------------------------------------CTATCAGCCGCAG---------CCA---CAGC----------------------AGGTGCAGATACAAGTACA------------------------------------GCAACAGCAGCAGCCACCG------CCAC----CGCCC---GTCG-----------------------------------TCAGTTTGCC-GCATATACCCA-----CTAAGCAG---G---AAC---CACCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................GCCGCAG---------CCA---CAGC----------------------AGGTGCA....................................................................................................................................................................................2111.00110
droWil2
AACA-A----TG------------GCA----GCAACAAC----------------------------AA----CAGCAACAACAACTGCAGCAGCAACA------------ACAACAGCAG---------CAACAACAAC-------------------AGCAG---------------------------------CAGCAACAACAGCAACAGGAACAACAACAGCAGCAGCAA------CAAC----AACAA---CA-----GCAGCAGCAACTGCAACAAC------------------------------------------AGCAG---C---AGC---AACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
AACA-A----TG------------GCA----GCAACAAC----------------------------AA----CAG.................................................................................................................................................................................................................................................................................23200.7014014000
........................................................................................................................................................................................................................AACAACAACAGCAGCAGC...................................................................................................................18200.45900090
..........................................................................................................................................................................................................................................AA------CAAC----AACAA---CA-----GCAGCA..............................................................................19200.25500050
.........................................................................................AGCAGCAACA------------ACAACAGCA.....................................................................................................................................................................................................................................19200.20400040
.................................AACAAC----------------------------AA----CAGCAACAACAACTG.....................................................................................................................................................................................................................................................................23200.20404000
..............................................................................................CAACA------------ACAACAGCAG---------CAACA......................................................................................................................................................................................................................20200.15300030
..............................................................................................CAACA------------ACAACAGCAG---------CAAC.......................................................................................................................................................................................................................19200.15300030
AACA-A----TG------------GCA----GCAACAAC----------------------------AA----CAGC................................................................................................................................................................................................................................................................................24200.15302010
...............................................................................................................ACAACAGCAG---------CAACAACA...................................................................................................................................................................................................................18200.15300030
...................................................................................................................................................................................................................................................AAC----AACAA---CA-----GCAGCAGCAAC.........................................................................21200.15300030
..................................................................................................................................CAACAACAAC-------------------AGCAG---------------------------------CAGCAAC.................................................................................................................................................22200.10200020
..........................A----GCAACAAC----------------------------AA----CAGCAACAACAACTG.....................................................................................................................................................................................................................................................................26200.10202000
..................................................................................................................................CAACAACAAC-------------------AGCAG---------------------------------CAGCAACA................................................................................................................................................23200.10200011
...........................................................................................................................................................................................................................................A------CAAC----AACAA---CA-----GCAGCAGCAAC.........................................................................23200.10200020
.........................................................................................................................................................................................................................................CAA------CAAC----AACAA---CA-----GCAGCAGC............................................................................22200.10200200
.....................................................................................................................................................................................................................................GCAGCAA------CAAC----AACAA---CA-----GC..................................................................................20200.10202000
......................................................................................TGCAGCAGCAACA------------ACAACAGCAG---------CAACA......................................................................................................................................................................................................................28140.07100010
................................................................................AACAACTGCAGCAGCAACA------------ACAACA........................................................................................................................................................................................................................................25150.07101000
..................................................................................................................................................................................................................................GCAGCAGCAA------CAAC----AACAA---CA-----GC..................................................................................23200.05101000
....................................................................A----CAGCAACAACAACTGCAGCA................................................................................................................................................................................................................................................................21200.05101000
...........G------------GCA----GCAACAAC----------------------------AA----CAGCAACAA...........................................................................................................................................................................................................................................................................23200.05101000
.......................................................................................................................................................................................................................................AGCAA------CAAC----AACAA---CA-----GCAGCAGCAAC.........................................................................27200.05100010
...................................................................AA----CAGCAACAACAACTGCAGCAGC..............................................................................................................................................................................................................................................................24200.05101000
.........................................................................................................................................AAC-------------------AGCAG---------------------------------CAGCAACAACAGCA..........................................................................................................................................22200.05101000
...................................................................AA----CAGCAACAACAACTGCAGCAGCAAC...........................................................................................................................................................................................................................................................27200.05101000
............................................................................................AGCAACA------------ACAACAGCAG---------CAACAA.....................................................................................................................................................................................................................23200.05100010
...............................................................................................................................................................AGCAG---------------------------------CAGCAACAACAGCAACA.......................................................................................................................................22200.05100010
.....................................................................................................................................CAACAAC-------------------AGCAG---------------------------------CAGCAACAACAG............................................................................................................................................24200.05101000
...................................................................................................................................AACAACAAC-------------------AGCAG---------------------------------CAGCAA..................................................................................................................................................20200.05100100
AACA-A----TG------------GCA----GCAACAAC----------------------------AA----CAGCA...............................................................................................................................................................................................................................................................................25200.05100010
.....................................................................................................................GCAG---------CAACAACAAC-------------------AGCAG---------------------------------CAGCA...................................................................................................................................................24200.05100010
......................................................................................................................................................................................................................................CAGCAA------CAAC----AACAA---CA-----GCAGCAGC............................................................................25200.05100001
....................................AAC----------------------------AA----CAGCAACAACAACTGCAG..................................................................................................................................................................................................................................................................23200.05101000
........................................................................................................................................................................................................................................GCAA------CAAC----AACAA---CA-----GCAGCAGC............................................................................23200.05100010
.................................................................................................CA------------ACAACAGCAG---------CAACAACAAC-------------------A.............................................................................................................................................................................................23200.05100001
.ACA-A----TG------------GCA----GCAACAAC----------------------------AA----CAGCA...............................................................................................................................................................................................................................................................................24200.05101000
.......................................................................................GCAGCAGCAACA------------ACAACAGC......................................................................................................................................................................................................................................20200.05100010
........................................................................................................................G---------CAACAACAAC-------------------AGCAG---------------------------------CAGCAACA................................................................................................................................................24200.05100010
..............................................................................................CAACA------------ACAACAGCAG---------CAACAACAAC-------------------A.............................................................................................................................................................................................26200.05100010
....................................................................................................................AGCAG---------CAACAACAAC-------------------AGCAG---------------------------------CAGCAA..................................................................................................................................................26200.05101000
............................................................................................................................................................................................................................ACAACAGCAGCAGCAA------CAA........................................................................................................19200.05100010
..................................................................................................A------------ACAACAGCAG---------CAACAACAAC-------------------..............................................................................................................................................................................................21200.05100010
.......................................................................................................................................ACAAC-------------------AGCAG---------------------------------CAGCAACAACA.............................................................................................................................................21200.05101000
...............................................................................................AACA------------ACAACAGCAG---------CAACAA.....................................................................................................................................................................................................................20200.05100010
..........................................................................AGCAACAACAACTGCAGCAGCAACA------------..............................................................................................................................................................................................................................................25200.05100010
...A-A----TG------------GCA----GCAACAAC----------------------------AA----CAGCAACA............................................................................................................................................................................................................................................................................25200.05101000
...................................CAAC----------------------------AA----CAGCAACAACAACTGCAGC.................................................................................................................................................................................................................................................................25200.05101000
..........................A----GCAACAAC----------------------------AA----CAGCAACAACAACTGCAG..................................................................................................................................................................................................................................................................29200.05101000
..................................................................................................................ACAGCAG---------CAACAACAAC-------------------AGCAG---------------------------------........................................................................................................................................................22200.05101000
...A-A----TG------------GCA----GCAACAAC----------------------------AA----CAGCA...............................................................................................................................................................................................................................................................................22200.05101000
..........TG------------GCA----GCAACAAC----------------------------AA----CAGCAACAACAAC.......................................................................................................................................................................................................................................................................28200.05101000
.............................................................................AACAACAACTGCAGCAGCAACA------------..............................................................................................................................................................................................................................................22200.05101000
.....................................................................................................................................................................................................................................GCAGCAA------CAAC----AACAA---CA-----GCAGCAGCA...........................................................................27200.05100010
....................................AAC----------------------------AA----CAGCAACAACAACTGCAGCA................................................................................................................................................................................................................................................................25200.05100010
...........G------------GCA----GCAACAAC----------------------------AA----CAGCAAC.............................................................................................................................................................................................................................................................................21200.05101000
...................................................................................................................................................................................................................................................AAC----AACAA---CA-----GCAGCAGCA...........................................................................19200.05100001
.................................AACAAC----------------------------AA----CAGCAACAACAACTGCAGC.................................................................................................................................................................................................................................................................27200.05101000
..........................................................................AGCAACAACAACTGCAGCAGCAA............................................................................................................................................................................................................................................................23200.05101000
.....................................................................................................................................................................................................................................GCAGCAA------CAAC----AACAA---CA-----GCAGC...............................................................................23200.05101000
......................................................................................................................................................................................................................................CAGCAA------CAAC----AACAA---CA-----GCAGCA..............................................................................23200.05101000
.................................................................................................................AACAGCAG---------CAACAACAAC-------------------AGCA..........................................................................................................................................................................................22200.05100001
.......................................................................................................................AG---------CAACAACAAC-------------------AGCAG---------------------------------CAGCAACA................................................................................................................................................25200.05100010
..........TG------------GCA----GCAACAAC----------------------------AA----CAGCAACAA...........................................................................................................................................................................................................................................................................24200.05100010
......................................C----------------------------AA----CAGCAACAACAACTGCAG..................................................................................................................................................................................................................................................................21200.05101000
...............................................................................................AACA------------ACAACAGCAG---------CAACAACAAC-------------------AG............................................................................................................................................................................................26200.05100010
.............................................................................................................................................................................................................................CAACAGCAGCAGCAA------CAAC----AACAA---C..........................................................................................25200.05100010
........................................................................................................................G---------CAACAACAAC-------------------AGCAG---------------------------------CAGCA...................................................................................................................................................21200.05101000
.ACA-A----TG------------GCA----GCAACAAC----------------------------AA----CAG.................................................................................................................................................................................................................................................................................22200.05101000
dp5
TGGCCA----CC-----------------AAGCAACAGC----------------------------A----------------------------------------GCAACAGCAGCAA---------------------CAACAGCA-GCAACAACAGCAGCAGCAACAGCAGCAACAA---------CAACAGCAGCAACAGCA---GCAGCAACAACAGCAGCAGCAGCAG------CAGGCGGCGGCCAATTGCCAGGCGCAGCAGCAGCAGCAACAAC------------------------------------------AGCAA---C---AGC---TAGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................CAGGCGGCGGCCAATTGCCAGGCGCA.................................................................................2620.5010100000000
........................................................................................................................................................................................................................................GCAG------CAGGCGGCGGCCAAT............................................................................................1920.5010100000000
.....................................................................................................................................................................................................................AGCAACAACAGCAGCAGCAGC...................................................................................................................21200.2040400000000
..........................................................................................................................................................ACAACAGCAGCAGCAACAGCAGCAACA........................................................................................................................................................................2760.1710010000000
...................................................................................................................................................................................CAA---------CAACAGCAGCAACAGCA---GCAGCAACA.................................................................................................................................2970.1410000001000
.........................................................................................................................................................................................................................ACAACAGCAGCAGCAGCAG------C..........................................................................................................20200.1020200000000
.............................................................................................................CAACAGCAGCAA---------------------CAACAGCA-GCAACAAC..............................................................................................................................................................................................28110.0910100000000
.............................................................................................................................................................................CAGCAACAA---------CAACAGCAGCAACAG...............................................................................................................................................24130.0810100000000
...............................................................................................................................................................................GCAACAA---------CAACAGCAGCAACAGCA---..........................................................................................................................................24140.0710010000000
.........................................................................................................................................................................ACAGCAGCAACAA---------CAACAGCAG.....................................................................................................................................................22170.0610100000000
....................................................................................................................................................................................................GCAGCAACAGCA---GCAGCAACAACAGCA...........................................................................................................................27170.0610100000000
.................................................................................................................................................................................................................................................................................AGCAGCAACAAC------------------------------------------AGCAA---C---A.........19200.0510100000000
...........................................................................................................................................................CAACAGCAGCAGCAACAGCA..............................................................................................................................................................................20200.0510000100000
....................................................................................................................................................................................AA---------CAACAGCAGCAACAGCA---GCA.......................................................................................................................................22200.0510100000000
.................................................................................................................................................................................AACAA---------CAACAGCAGCAACAGC..............................................................................................................................................21200.0510010000000
...................................................................................................................CAGCAA---------------------CAACAGCA-GCAACA................................................................................................................................................................................................20200.0510100000000
........................................................................................................................................................................................................................AACAACAGCAGCAGCAGCAG------CA.........................................................................................................22200.0510100000000
.......................................................................................................................AA---------------------CAACAGCA-GCAACAACAGC...........................................................................................................................................................................................21200.0510000100000
........................................................................................................................................................CAACAACAGCAGCAGCAACAGCAG.............................................................................................................................................................................24200.0510100000000
.............................................................................................................CAACAGCAGCAA---------------------CAACAGCA-GCA...................................................................................................................................................................................................23200.0510000100000
.................................................................................................................................................................................................ACAGCAGCAACAGCA---GCA.......................................................................................................................................18200.0510100000000
....................................................................................................................AGCAA---------------------CAACAGCA-GCAACAAC..............................................................................................................................................................................................21200.0510100000000
.........................................................................................................................................................................................................................ACAACAGCAGCAGCAGCAG------...........................................................................................................19200.0510100000000
.............................................................................................................................................................................CAGCAACAA---------CAACAGCAGCA...................................................................................................................................................20200.0510000010000
...............................................................................................................ACAGCAGCAA---------------------CAACAGCA-GCAAC.................................................................................................................................................................................................23200.0510001000000
...................................................................................................................CAGCAA---------------------CAACAGCA-GCAACAA...............................................................................................................................................................................................21200.0510100000000
..................................................................................................................................................................................ACAA---------CAACAGCAGCAACAGCA---..........................................................................................................................................21200.0510000100000
...........................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAAC------------------------------------------AGCA..................22200.0510000001000
....................................................................................................................................................CA-GCAACAACAGCAGCAGCAACA.................................................................................................................................................................................23200.0510010000000
.....................................................................................................................................................................................................CAGCAACAGCA---GCAGCAACAAC...............................................................................................................................22200.0510100000000
......................................................................................................................CAA---------------------CAACAGCA-GCAACAACAGCA..........................................................................................................................................................................................23200.0510100000000
.............................................................................................................................................................................................................................................................................CAGCAGCAGCAACAAC------------------------------------------AGCAA---C---A.........23200.0510100000000
........................................................................................................................................................................................................................AACAACAGCAGCAGCAGCAG------C..........................................................................................................21200.0510000100000
............................................................................................................................................................................GCAGCAACAA---------CAACAGCA......................................................................................................................................................18200.0510000100000
..........................................................................................................................................................................................................................CAACAGCAGCAGCAGCAG------CAGGC......................................................................................................23200.0510100000000
droPer2
GCAACA------------------------------------------------------------------------------------------------------GCAGCAGCAGCAA---------------------CAACAGCA-GC---AACAGCAGCAGCAGCAACAACAACAG---------------CAGCAGCAACAGCAGCAG---CAACAGCAGCAGCAACAA------CAGC----AG-----------------------CAGCAGCAACAGCAGTCGATGGCAGG---GCC-ACAGAACCTCA-----CGGGAGAG---GA--GCC---AG--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................AGCAGTCGATGGCAGG---GC...........................................1813.003210000
.....................................................................................................................................................................................................................................................................................GCAGCAACAGCAGTCGATGGCAGG---GG...........................................2612.002200000
.......................................................................................................................................................................................................................................................................................AGCAACAGCAGTCGATGGC...................................................1912.002200000
........................................................................................................................................................................................................................................................................................................GCAGG---GCC-ACAGAACCTCA-----CGGGAGAG---..............2711.001000001
...........................................................................................................................................................................................................................................................................................ACAGCAGTCGATGGCAGG---GCC-ACAGAAC..................................2811.001010000
................................................................................................................................................................................................................................................................................................AGTCGATGGCAGG---GCC-ACAGAACCT................................2511.001100000
.....................................................................................................................................................................................................................................................................................GCAGCAACAGCAGTCGATGGCAGG---GC...........................................2611.001100000
.....................................................................................................................................................A-GC---AACAGCAGCAGCAGCAACA..............................................................................................................................................................................22200.102002000
.................................................................................................................................................................................AACAG---------------CAGCAGCAACAGCAGC........................................................................................................................................21200.051001000
.................................................................................................................................................................CAGCAGCAGCAACAACAACAG---------------CAGCA...................................................................................................................................................26200.051001000
.....................................................................................................................................................................................................................................GCAACAA------CAGC----AG-----------------------CAGCAGCAACA...............................................................24200.051001000
....................................................................................................................................................................CAGCAGCAACAACAACAG---------------CAGC....................................................................................................................................................22200.051100000
...................................................................................................................................................................................................................................CAGCAACAA------CAGC----AG-----------------------CAGCAGCA..................................................................23200.051001000
....................................................................................................................................................................................................................................AGCAACAA------CAGC----AG-----------------------CAGCAGC...................................................................21200.051010000
.....................................................................................................................................................................AGCAGCAACAACAACAG---------------CAG.....................................................................................................................................................20200.051010000
droAna3
GCA--------------------------GAGCAGGAGC----------------------------GA----CG---------------------------------GCAGCAGCAGCAG---------------------CCACAGCA-GC---AACAGCAGCAGCAGCAACAGCAACAG---------------CAACAGCAACAGCAGCAG---CAACAGCAGCAGCAACAG---CAGCAGC----AGCCA--------------------CAGCAGCA---------------------------------------------GCAA---CAGCAGCAACGA--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................ACAG---CAGCAGC----AGCCA--------------------CAGC......................................................................2011.001010000
...................................................................................................................................................................................................................................CAGCAACAG---CAGCAGC----AGCCA--------------------C.........................................................................2220.501010000
...................................................................................................................................................................................................................GCAG---CAACAGCAGCAGCAACAG---CAGCAGC----...................................................................................................2960.171010000
.................................................................................................................................................................................................................................................GCAGC----AGCCA--------------------CAGCAGCA---------------------------------------------GC...................2070.141010000
..................................................................................................................................................................................................................................GCAGCAACAG---CAGCAGC----AGCC...............................................................................................21160.132011000
...............................................................................................................GCAGCAGCAG---------------------CCACAGCA-GC---.................................................................................................................................................................................................2080.131000001
...........................................................................................................................................................................................................................................G---CAGCAGC----AGCCA--------------------CAGCAGC...................................................................2080.131000001
.....................................................................................................................................................A-GC---AACAGCAGCAGCAGCAACAGCA...........................................................................................................................................................................25200.102011000
....................................................................................................................................................................................................................CAG---CAACAGCAGCAGCAACAG---CAGCA.........................................................................................................26130.081010000
........................................................................................................................................................................................................CAGCAACAGCAGCAG---CAACAGCAGCA........................................................................................................................26130.081010000
.....................................................................................................................................................................................G---------------CAACAGCAACAGCAGCAG---CAACAGC............................................................................................................................26140.071010000
.................................................................................................................................................................................AACAG---------------CAACAGCAACAGCAGCAG---CAAC...............................................................................................................................27150.071000001
...........................................................................................................................................................................................................CAACAGCAGCAG---CAACAGCAGCAGC......................................................................................................................25200.051010000
..........................................................................................................................................................................CAACAGCAACAG---------------CAACAGCAACAGCAGC........................................................................................................................................28200.051010000
...............................................................................................................................................................AGCAGCAGCAGCAACAGCAACAG---------------C.......................................................................................................................................................24200.051000001
...................................................................................................................................................................................................................GCAG---CAACAGCAGCAGCAACAG---CAGA..........................................................................................................26200.051100000
...................................................................................................................................................................................CAG---------------CAACAGCAACAGCAGCA.......................................................................................................................................20200.051010000
.....................................................................................................................................................................................................CAACAGCAACAGCAGCAG---CA.................................................................................................................................20200.051100000
......................................................................................................................................................................................................AACAGCAACAGCAGCAG---CAACAGC............................................................................................................................24200.051010000
....................................................................................................................................................................................................................................AGCAACAG---CAGCAGC----AGCC...............................................................................................19200.051000001
..............................................................................................................................................................................AGCAACAG---------------CAACAGCAACAGC...........................................................................................................................................21200.051001000
.....................................................................................................................................................................................................................AG---CAACAGCAGCAGCAACA..................................................................................................................19200.051010000
............................................................................................................................................................................ACAGCAACAG---------------CAACAGCAAC..............................................................................................................................................20200.051010000
..........................................................................................................................................................................................................................CAACAGCAGCAGCAACAG---CAGCAGC----...................................................................................................25200.051010000
...........................................................................................................................................................................................................................AACAGCAGCAGCAACAG---CA............................................................................................................19200.051000001
...................................................................................................................................................................................................................GCAG---CAACAGCAGCAGCAACAG---C.............................................................................................................23200.051010000
droBip1
TGGTCG----CCATGCCCAGCCAGGTT----------GCAACCAGCACCGGAAATCCAGT--ATCACCGCT-------------------------CCA---------GCAACAACAGCAA---------------------------CA-CC---AACAGCAGCAGCAGCAACAGCAACAGCAGCAG---------CAACAGCAACAGCAGCAGGC---ACAGCAACAGCAGCAG------G---------------------------------CACAGCAACA------------------------------------------GCAG---C---AGG---CACASizeHit CountTotal NormTotal
No Reads
droKik1
CAGCAA----CA------------TCT----------AC----------------------------AG----CA---GCAACAGCAGCAGCATCATCTACAG---------CAGCAGC------------AGCATCTAC-------------------AGCAACAGCAGCATCTACAGCAG---------------CAGCAGCAGCA---GCAGCATCTACAGCAGCAGCAGCAG------CAGC----AGC-----------------------AGCATCATC---------------------------------------TCCAGCAGCAGC---AGC---AA--SizeHit CountTotal NormTotal
No Reads
droFic1
CCACCT----CG------------CCGCAGGGCCA---------------------------------C----CT---------------------------------GCAACAGCAGCA----------------------------------------GCAGCAGCAACAACAGCAGCAGCAGCAGCAACACCAGCAACATCAGCAGCAGCAA---CACCAGCAGCTGCAGCAG---CAACAGC----AGCCAATTGCGA-----------------------------------ACAGCTCGTCGGCAGCTTCCAG-----TGGAGCGG---GC--AGC---AG--SizeHit CountTotal NormTotal
No Reads
droEle1
TGGCCAAGGAGG------------CCGCCGAGCAGCAGC----------------------------AG----CA---GCAACAGCAGCAGCAACAACAACAG---------CAGCAGC------------AGCAGCAAC-------------------AGCAGCAG------------------------------CAGCAGCA---------------------GCAGCAGCAG------GAGC----AGCAA---CG-----TCGCTTCGAGCAGGAGCAACA---------------GGAGCA-GCAGCGACGCA-----AGGAGGAG---C---AAC----AGCSizeHit CountTotal NormTotal
No Reads
droRho1
CGTGAA----TG------------CCTCCATACAGTTGC----------------------------AT-------------------------------------------------CAACAGCAGCAGCAG------CAGCCGC---A-GA---TCAGGGAACGCGAGCACCACCAACAG---------------CCGCAGCAGCA---GCAGCAACAACAGCAGCAGCAGCAG------TTGC----AGCC-----------GCAGATGCAGCAGCAACAAC------------------------------------------AGCAG---C---AGC---A-GCSizeHit CountTotal NormTotal
No Reads
droBia1
TCGCCA----TC------------C--CAGTGCC---------------GTGAGTCCGG-------------------------------------------------TCAGCTCCCTCAA---------------------CCACTCCATGA---TGCAGCAGATGCAGCAGCAGCAGCAG---------------CAACAGCA------ACAGCAGCAACAGCAGCAGCAGCAA------CACC--ACCAGCT---GAGC-------CCCCCGCCGCA----------------------------TGGAATGCCCT-----C-GGGCAA---T---GGC---CTGCSizeHit CountTotal NormTotal
No Reads
droTak1
GGCC-T----CG------------C------CCACCA-----------------------------------------------------------------------GCAACCTCCTCTA---------------------CGCCGCCCAGATGCAACAGCAGCAGCAGCAACATCAACAG---------------CA------------GCAGCAACAACAGCAGCAGCAGCTGGCC---TCCC-TGTATCCC---GCTT------TCTACTACAGCAACA-----------------------------------------TCAAGCAG---G---AGC---AGGCSizeHit CountTotal NormTotal
No Reads
droEug1
TCAAAA----TG------------ATTTCGATCTC--------------------------------AAGCGTCT---------------------------------GCAGCAGCAGCA------------GGCCA------------T-GC---AGCAGCAGCAACAGCAACAACAACAG---------------CAGCAGCAGCAACAACAACACCATCAGCAGCAGCAGCAG------CAGC----AACCCAAAATGG-----------------------------------GAGGTGTGCC-C--------AACTTCAATAAGCAA---C---AGC---A-GCSizeHit CountTotal NormTotal
No Reads
dm3
TGGGCA----TG------------GGTCTGACCAACAGG----------------------------AA---------------------------------------GCTACAGCAGCAACAGCA---------G------------CA-GC---ATCAGCAGCAGCAACAACAACAGCAG---------------CAGCAGCACCAGCAACAGCAACAACAACAGCAGCAGCAG------GTGC----AGCCT---GT-----CCAGCTGGCGCAGCAGCAACA------------------------------------------GCAG---C---------AG--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................GCAACAACAACAGCAGCAGCAG------GTGC----A..................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....A----TG------------GGTCTGACCAACAGG----------------------------AA---------------------------------------GC...............................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TG------------GGTCTGACCAACAGG----------------------------AA---------------------------------------GC...............................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCA----TG------------GGTCTGACCAACAGG----------------------------AA---------------------------------------GCTACA...........................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGACCAACAGG----------------------------AA---------------------------------------GCTACAGCAGC......................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AACAGG----------------------------AA---------------------------------------GCTACAGCAGCAACAGCA---------G------------C........................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100000
.................................AACAGG----------------------------AA---------------------------------------GCTACAGCAGCAACAGCA---------......................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..............................ACCAACAGG----------------------------AA---------------------------------------GCTACAGCAGCAACAGC................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
......................................................................................................................................................................................................................GCAACAACAACAGCAGCAGCAG------GTGC----C..................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GACCAACAGG----------------------------AA---------------------------------------GCTACAGCA........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GGTCTGACCAACAGG----------------------------AA---------------------------------------GCTACAGCAGC......................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................G------GTGC----AGCCT---GT-----CCAGCTGGCGC.........................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................CCAACAGG----------------------------AA---------------------------------------GCTACAGCAGCAACAGC................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..GGCA----TG------------GGTCTGACCAACAGG----------------------------AA---------------------------------------GCT..............................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................CAGCAACAACAACAGCAGCAGCAG------GT.........................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................AACAACAGCAGCAGCAG------GT.........................................................................................................1921.0020000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................................................................................................................AACAACAACAGCAG---------------CAGCAGCAC...............................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................TGACCAACAGG----------------------------AA---------------------------------------GCTACAGCA........................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................ACAGG----------------------------AA---------------------------------------GCTACAGCAGCAACAGCA---------......................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................AACAGCAACAACAACAGCAGCAGCAG------G..........................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
TGGGCA----TG------------GGTCTGACCAACAGG----------------------------AA---------------------------------------GCTGCAGCAGCAACAGCA---------G------------CA-GC---ATCAGCAGCAACAGCAGCAACAACAG---------------CAACAGCACCAGCAGCAAGTCCAACAGCAGCAGCAGCAG------GTGC----AGCCT---GT-----CCAGCTGGCGCAGCAGCAACA------------------------------------------GCAG---C---------AG--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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droSec2
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Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................AGCAGCAGGTCCAACAGCA...........................................................................................................................1911.0010010
.................................................................................................................................................................................................................CAGCAGGTCCAACAGCAGC.........................................................................................................................1930.3310010
................................................................................................................CAGCAGCAACAGCA---------G------------CA-GC---ATCAGCAG.........................................................................................................................................................................................2770.1410010
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droYak3
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Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
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.........................................................................CC---------------------ACAGCAGCAGCAGCAG------------------------------------CA-......................................................................................................................................................................................................20200.10201010000000
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.......................................................................................................................................................................CAGCAACAGCAGCAG---------------CAGC....................................................................................................................................................19200.05100010000000
..........................................................................................................................................................................CAACAGCAGCAG---------------CAGCAGCAGCA---GCA.......................................................................................................................................26200.05101000000000
..........................................................................C---------------------ACAGCAGCAGCAGCAG------------------------------------CA-G.....................................................................................................................................................................................................20200.05101000000000
........................................................................................................................................................................AGCAACAGCAGCAG---------------CAGCA...................................................................................................................................................19200.05101000000000
.....................................................................................................................................................A-GC---AACAGCAACAGCAGCAA................................................................................................................................................................................20200.05100000100000
...............................................................................................................................................................................................................A---GCAGCAGCAACAGCAGCAGCAACAG------C..........................................................................................................27200.05100100000000
......................................................................................................................................................................GCAGCAACAGCAGCAG---------------CAGCAGCAGC..............................................................................................................................................26200.05101000000000
...............................................................................................................G------------------------------------CA-GC---AACAGCAACAGCAGCAACA..............................................................................................................................................................................24200.05101000000000
......................................................................................................................................................................................................................................CAACAG------CAGC----AGC-----------------------AACAGC...................................................................19200.05101000000000
..........................................................................................................................................................................................................................CAACAGCAGCAGCAACAG------CAGC----AGC-----------------------A........................................................................26200.05100010000000
..................................................................................................................................................................AACAGCAGCAACAGCAGCAG---------------CAGC....................................................................................................................................................24200.05101000000000
.................................................................................................................................................................................................................................AGCAGCAACAG------CAGC----AGC-----------------------A........................................................................19200.05101000000000
.........................................................................................................GCAGCAG------------------------------------CA-GC---AACAGCAACAGCA....................................................................................................................................................................................24200.05101000000000
............................................................................................................................................................................................................AGCA---GCAGCAGCAACAGCA...........................................................................................................................19200.05100010000000
.............................................................................................................................................................................................................GCA---GCAGCAGCAACAGCAGCAGCA.....................................................................................................................24200.05100100000000
.....................................................................................................................................................................................................CAGCAGCAGCA---GCAGCAGCAAC...............................................................................................................................22200.05100000100000
.....................................................................................................................................................A-GC---AACAGCAACAGCAGCAACAG.............................................................................................................................................................................23200.05101000000000
..................................................................................................................................................................AACAGCAGCAACAGCAGCA........................................................................................................................................................................19200.05101000000000
droEre2
TGCGGG----TG------------GGTCGGAG----------------------TCCAGTTAACCGCAGCTTTCC---------------------------------ACAACAGCAGCAG---------------------------C-------AACAGCAGCAGCAG---------CAG---CCACAG------CAGCAGCC------ACAGCAACAGCAACAGCAGCAGCAG------CTGC------------------------------AGCAGCAACT------------------GCA-GCAGATTCCAA-----CT-GCCAG---G---AGC---AATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................ACAGCAACAGCAGCAGCAG------C..........................................................................................................20200.1020000110
........................................................................................................................................................................................................................AACAGCAACAGCAGCAGCA..................................................................................................................19200.1020000110
.......................................................................................................................AG---------------------------C-------AACAGCAGCAGCAG---------CAG---CC..................................................................................................................................................................22150.0710100000
.......................................................................................................................................................................................................................CAACAGCAACAGCAGCAGCAG------...........................................................................................................21200.0511000000
...................................................................................................................................................................................................................ACAGCAACAGCAACAGCAGCAGC...................................................................................................................23200.0510100000
............................................................................................................ACAACAGCAGCAG---------------------------C-------AACAGCAG.........................................................................................................................................................................................22200.0511000000
......................................................................................................................................................................................................................GCAACAGCAACAGCAGCAGC...................................................................................................................20200.0510001000
........................................................................................................................................................................................................................AACAGCAACAGCAGCAGCAG------C..........................................................................................................21200.0510001000

Generated: 05/18/2015 at 02:19 AM