dmo_2243

CDS [Dmoj\GI14510-cds]; CDS [Dmoj\GI14510-cds]; exon [dmoj_GLEANR_15126:1]; exon [dmoj_GLEANR_15126:2]; intron [Dmoj\GI14510-in]

##################################################-------------------------------------------------------------------################################################## CTTGGCGGCCGCGCAGCAGGAGGCGAGAACAACAACAGCAGCAGCCAAAGGTGAGCCATCAGCATGAGCCATCCGTCCGTTTGAGCAGGAGCAAAAACTCTTCCTCCGTTCGACTAGCCAGCAGAAGGTCTACCCGACGCTGCGACTGCGACTGCAGGAGCCGCCGA ************************************************...((.........................((((((.((((.((......)).))))))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body
.....................................................................................................................CCAGCAGAAGGTCTACCCGACG............................	22	0	1	1.00	1	1	0
.................................................................GAGCTATCCGTCGTTTTGA...................................................................................	19	3	20	0.05	1	0	1

GAACCGCCGGCGCGTCGTCCTCCGCTCTTGTTGTTGTCGTCGTCGGTTTCCACTCGGTAGTCGTACTCGGTAGGCAGGCAAACTCGTCCTCGTTTTTGAGAAGGAGGCAAGCTGATCGGTCGTCTTCCAGATGGGCTGCGACGCTGACGCTGACGTCCTCGGCGGCT ************************************************...((.........................((((((.((((.((......)).))))))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head
....................................................................................................................CTGTCGTCTTCGAGATGGGTT..............................	21	3	5	0.20	1	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6603:1247-1413 +	dmo_2243	CTTGG-C-----GG---CCGCG--------------------------CAGCAGGAGGCGAG------AACAACAACAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCAAAGGTGA------------------------G--CCATCAGCATGAGCCATCCGTCCGTTTGAGCAGGAGC---------AAA---------AA----------------------------------------------------------------CTCTTCCTCCGTTCGACT-------------AGC-C-----------------AGCAGAAGGTCTA-CCC------------------------------------------------------------------GACGCTGC---GAC------TG---CGACTGCAGGA----------------------------------G--CCGCCGA
droVir3	scaffold_12875:12828016-12828197 -		GCTG-AA-----GC---AGCTG--------------------------CAGCTAAAG-CAGCCGACAATACACCAGCACCAGC----------------AGCAC-ATTAGCTACCATCA----------------TCATC--------------------------------------------------------------------------------------------------------------------------------------------------------ATCCCTA-------------------------------------------------------CTACCAGCAGCA---GACGCAGC---------AA----------------------------------CT------------------------------CAGCCACAG-CCTTCCAGCAGCGCATCATGCC-C-----------------AGCACAAGGTACA-GGT------------------------------------------------------------------GCAGGTAC---AGG------TG---CAACAACAGCA----------------------------------G--CAGCAGA
droGri2	scaffold_3013:4186-4343 -		GCAG-CA-----GC---AGCAG--------------------------CAGCAGCAG-CAGC------GGCAGCAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGC---AGCGGCAGC------------------------G-----GC-----------------------------AGCAGCAGCAGCAGCAGCGGC---AGCAG--CAGCAGC------AGCAGCAG--------CTC------------------------------T------GGTCA---------------------GCAGC------------AGCAGCAGCTGCA-GCA------------------------------------------------------------------GCAGCAGC---AGC------AG---CGGCAGCAGCA-------------------------------------GCAGCAG
droWil2	scf2_1100000004966:175531-175693 -		GCGG-CG-----GC---GGGTA--------------------------CAGCGGTGG-TGGG------TACAGCAGTGGCAGC----------------GGGTGCAGCA--------------------GTGGCAGC---GGCGGCAGCAGTGGCAGCGGCGGCAGGTACCGTAATGGATGCGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCG------------GCGGCGGGTACA-GCG------------------------------------------------------------------GTGGCAGC---GGCGGCGTGTA---CAGCGGTG-----------------------------------GTG--GGTACGG
dp5	2:27566242-27566406 -		TTGG-GA-----GG---AGGAG--------------------------GAGTAGGAG-GTGC------TG-TCCAACAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACGTCTCTGA------------------------A----------------------------------TCACAA---------------------C----------------------------------AACAACCATATGATTGTGCCGAA----TC-CTATGTCGTCGCCCGGCAAGCCGCTCAACTGTTCC-----------------------ATGAACGATGCC---------------------------------------------------------------------AAGGTGGCAGC------AGCTGCTGCTGCAGCA----------------------------------G--CCGC--C
droPer2	scaffold_25:1050995-1051160 +		GTCG-AA-----GC---AGCAG--------------------------CAACAGCAG-CAAC------AAGAACAACAACAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC---AACAACA-----------------------------------GCA--------------------------------GCAGCAGC---------AA----------------------------------GTCGAGC---C-----------------------------------------A---------GAA-G-------------------------------------CAGAAGCAGAACCAGAACCAGAAATCGATACCCATCAAGATACCATTGAGCGAGCGTTTCTCGTCGCA-----GAC------CT------CGACAGGA----------------------------------T--CGGCGGA
droAna3	scaffold_13117:3529977-3530126 -		CAATG-C-----AG--CCG-----------------------------TGGCAGCGG-CGGC------GGCATCAGCGGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---AGCGGCGGG----------------------------CATCAACAACAGTTATC-------------TG--------------------------------------CCGCCGTCG------CCGCAGCA------C---C-----------------------------------------A---------CC-------AG------------C-------------A------------------------------------------------------------------GCATCGTT---TAT------TC---CAGCAGGCGCC---C---------TACAGTATGCCCCAAGCGACCC--CCTACCG
droBip1	scf7180000396696:238336-238496 -		GCAG-CA-----GC---AACAG--------------------------CAACAGCAG-CGAG------TGCAGCAGCAGCAGCGCGAGAGTCTGGC---------------CACCGCCATGGCGGCTGGGATGCGGCATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCG--------------CTC-------C-----------------------------------------T---------GCC-GCCACCGGAGGCCATGCACCCGA------A-TCC------------------------------------CTTCCA------------------------GTTGCTGA---GAA------TG---CCGCTGCCGCC----------------------------------G--GCCCTGG
droKik1	scf7180000302476:743879-744032 +		CCAGA-T-----CA---TTCCG--------------------------CCGCAGCAG-CAAC------AGCAACAACAACAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGGCAG------------------------G----------------------------------------------------------------------------------------------------------ACATGGAGATGGA----AG-CTATCAGCAGTATCGAGGAGCCAGTCAAATGC-T-G-----------------GCCGCAAGAAGCAATCT------------------------------------------------------------------GGTGATGC---AGC------AG---CAGCAGCAGCA----------------------------------GCAACACCAA
droFic1	scf7180000453912:1687354-1687505 -		GCAG-CA-----GC---AGCAG--------------------------CAACAGCAG-CAGC------AACAGCAGCAGGAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---AACGCCG---------------CTT-------------------------------------CGAGCAGGAGCAACAGGAGCAGCAGCGGCGCAAGGAGGA--GCAACAGCAGCAG--------------ATC-------C-----------------------------------------A---------GCG-CCAGCA----------------------------------------------------------------------------------------------GCAGCACC---TGC------AG---CAGCTGCAGCA----------------------------------G--CAGCAGA
droEle1	scf7180000491249:4499670-4499831 +		CCAC-CA-----GC---AGCAG--------------------------TCGCACCAC-CAGC------A------------GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCCTCGCACC------------------------A--CCAACAGCA--------------------------------GTCGCCCC---------ATGGCCAGT-------------------------------------CCATGAACATGTATAAATCGCCGGCTTACTTGCAACG--------------ATCC-GAGATCGAAGATCAAGT------------A-TCC------------------------------------------------------------------GCAGCGGC---GGC------CG---TGGCAGCAGCG----------------------------------G--CGGCCAA
droRho1	scf7180000779932:88585-88749 +		TTCGG-ATACCTACAATAG---------------------------------------CAGT------AGCAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCCAGTTTGGAGCCCTGGTCCACTTGGTCCACGATC--GAC-----------------AGCTTTAGCAGCAGC---------AGC---------AGCAGCACA---ACAGCA----------------------------------ACA-----------------------------------------------------------------------------TCTGACGACAGT-----------------------------------------------A----------TTAGCAGC---AGCAGCAACTA---CGATGCC-----------------------------------TGGG--CCACCTA
droBia1	scf7180000301468:913112-913294 +		GCAGA-C-----GG---TGGCG--------------------------CAGCAGCAG-CAAC------AGCAACA------AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCCGTGGCGC------------------------A--GCAACAGCATGCGGC-----------TCAGCAGCAGCA---------------------G----------------------------------GTCAAGCAACTGGAGGAACTGAA----TC-GGGCTGTGATGC------TCC-A---------GCG-CTTTCA---------------------------------------------------------------------GGCTGCCCGGCAGCCGGCAAACCCTGGCGCTGC---GGC------AG---CGGCTGCGGCG----------------------------------G--CCGCAGC
droTak1	scf7180000415313:160831-160971 -		TTCAGCA-----GC---AG-----------------------------CAACTTCAG-CAGC------AACAACAACAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---AACAGCTTA------------------------TTC--AAC--------------------------AGCAACAGCTGGAGCAGC---------AGAACTACT---AT----------------------------------ACGTACA-----------------------------------------------------------------------------TGCAACAGCAGC-----------------------------------------------A----------GGA---------GA------AC---CAACAACAGCAGCCGCT-------------------------GGAA--CCTCCAA
droEug1	scf7180000409538:185387-185522 +		CTAG-CG-----TC---GGCAG--------------------------CGACGCCAG-CAGC------ATGTCCAAAACAAGC---------------------------------------------------------------------AGCGGG-------------------------------------------AATCCGAG---------------------------------------------------------------TGCAGCAGCAACAC--------------A------------------------AGC--AGC--------------------------AG--------------------------------------CAGCAGCCG--------------CTG-------C-----------------------------------------A---------GCA-GCAGCAG------------CAGCA----------------------------------------------------------------------------------------AG------TG---CAACAAATGC---CGCC-------------------------AATG--CCGCCGA
dm3	chr3R:11239564-11239690 +		GCAG-CA-----GC---AGCAA--------------------------CAACAACAG-CCGC------CGCAGCAACAGCAGC---------------------------------------------------------ATCAGAACATACAGCCACAAGGGCAAAACACGCAACCAGCGCGTCAGGTGCGCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCGATA---A-CCA------------------------------------------------------------------AATGCAGG---AAC------TG----------------------------------------------------CGACAG
droSim2	x:11963775-11963906 -		TTTGG-CGGCCAGC---AGCCGTACAAGAAGCAACGGCTTAGCGAGGCCAAT----G-CCAA--------CAATATGAATCACCTGCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACACCCGCAGCAGCAACAC--------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------A---------G--------------------------------------------------------------------------------------------------------CAGCAGC---AGCAGC---AG---CAGCAACATCA--------------------------------GGC--GCACCAG
droSec2	scaffold_4:205662-205820 +		ATCAA-C-----AA--CAG-----------------------------CAGCAGCAG-CATC------AGCAACAACAGCAAC----------------AGTTCCAGCA--------------------GCAACAGCAACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------TTC--A-----------------------CC---AGCAGCA--------------------------------ACAGGATCAA--------------CTG---------------------------CAGTTCCAGCAACAGCAT-------------CTC-C-----------------AGCTTTATGCACA-CGC------------------------------------------------------------------ACCACTGAAGCAAC------AG------CAATTGCA----------------------------------G--CAGCAGC
droYak3	X:12971684-12971833 +		ACAG-CA-----GC---AGCAA--------------------------CTCAAGGAG-CGAG--------CATCAGCAGTAGCCAGCAACTTTAGCCTCAGTTGCAGC-------GAACTGGCCATTGAGCAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAG------------------------C-----------------------------------------A---------GCA-GCAGCAA------------CAGGG----------------------------------------------------------------------------------------CG------TC---CTGCAGCTGC---CGGCCACGCCCTCC---------------AGCA--GCTCCAC
droEre2	scaffold_4770:10765730-10765936 +		CA-G-CA-----GC---AG-----------------------------CAGCAGCAG-CAGC------A---TCAGAACATGC---------------------------------------------------------------------AGCCACAAGGGCAAAACACACAGCCGACGCGTCAGGTGCGCACGCGCGATAACCAAATGCAGGATTTGCGACAGTTTGGCCAGGACTTCCAACTGGCCCCGAGCAACACTTCGCCACCCCAGCAGCAGCAGCAA--------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------A---------GC-------------------------------A-GCA------------------------------------------------------------------GCAGCAGC---AAG------TG---CAGCAGCAGCA-------------------------------------ACAGCGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

CTTGG-C-----GG---CCGCG--------------------------CAGCAGGAGGCGAG------AACAACAACAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCAAAGGTGA------------------------G--CCATCAGCATGAGCCATCCGTCCGTTTGAGCAGGAGC---------AAA---------AA----------------------------------------------------------------CTCTTCCTCCGTTCGACT-------------AGC-C-----------------AGCAGAAGGTCTA-CCC------------------------------------------------------------------GACGCTGC---GAC------TG---CGACTGCAGGA----------------------------------G--CCGCCGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-C-----------------AGCAGAAGGTCTA-CCC------------------------------------------------------------------GACG............................................................................	22	1	1.00	1	1	0	0	0	0	0

droVir3

GCTG-AA-----GC---AGCTG--------------------------CAGCTAAAG-CAGCCGACAATACACCAGCACCAGC----------------AGCAC-ATTAGCTACCATCA----------------TCATC--------------------------------------------------------------------------------------------------------------------------------------------------------ATCCCTA-------------------------------------------------------CTACCAGCAGCA---GACGCAGC---------AA----------------------------------CT------------------------------CAGCCACAG-CCTTCCAGCAGCGCATCATGCC-C-----------------AGCACAAGGTACA-GGT------------------------------------------------------------------GCAGGTAC---AGG------TG---CAACAACAGCA----------------------------------G--CAGCAGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................TA-------------------------------------------------------CTACCAGCAGCA---GACGCA.....................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TG-AA-----GC---AGCTG--------------------------CAGCTAAAG-CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................GCTACCATCA----------------TCATC--------------------------------------------------------------------------------------------------------------------------------------------------------ATCCCTA-------------------------------------------------------CT........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTACA-GGT------------------------------------------------------------------GCAGGTAC---AGG------T...........................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA---GACGCAGC---------AA----------------------------------CT------------------------------......................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................AC-ATTAGCTACCATCA----------------TCATC--------------------------------------------------------------------------------------------------------------------------------------------------------ATCCC...................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC-C-----------------AGCACAAGGTACA-GGT------------------------------------------------------------------................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TACCATCA----------------TCATC--------------------------------------------------------------------------------------------------------------------------------------------------------ATCCCTA-------------------------------------------------------CT........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....AA-----GC---AGCTG--------------------------CAGCTAAAG-C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TTAGCTACCATCA----------------TCATC--------------------------------------------------------------------------------------------------------------------------------------------------------ATCCC...................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................C-ATTAGCTACCATCA----------------TCATC--------------------------------------------------------------------------------------------------------------------------------------------------------ATCC....................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTACA-GGT------------------------------------------------------------------GCAGGTAC---AGG------TG---C......................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACAAGGTACA-GGT------------------------------------------------------------------GCAGGTAC---A....................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TACCAGCAGCA---GACGCAGC---------A.........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCGCATCATGCC-C-----------------AGC................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTACA-GGT------------------------------------------------------------------GCAGGT..........................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG-CCTTCCAGCAGCGCATCATGCC-.....................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACA-GGT------------------------------------------------------------------GCAGGTAC---AGG------T...........................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAG-CCTTCCAGCAGCGC..............................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGT------------------------------------------------------------------GCAGGTAC---AGG------TG---CAACAACAGCA----------------------------------..........	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATCATGCC-C-----------------AGCACAAGGTACA-GG...................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTACA-GGT------------------------------------------------------------------GCAGGTAC---AGG------T...........................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................GCTACCATCA----------------TCATC--------------------------------------------------------------------------------------------------------------------------------------------------------ATCC....................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---GACGCAGC---------AA----------------------------------CT------------------------------CAGCCACA..............................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------CT------------------------------CAGCCACAG-CCTTCCAGCAGCG...............................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGCAGCGCATCATGCC-C-----------------A..................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CTG-AA-----GC---AGCTG--------------------------CAGCTAAAG-C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG-CCTTCCAGCAGCGCATCAT.........................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-CCTTCCAGCAGCGCATCA..........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGCATCATGCC-C-----------------AGC................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GCAG-CA-----GC---AGCAG--------------------------CAGCAGCAG-CAGC------GGCAGCAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGC---AGCGGCAGC------------------------G-----GC-----------------------------AGCAGCAGCAGCAGCAGCGGC---AGCAG--CAGCAGC------AGCAGCAG--------CTC------------------------------T------GGTCA---------------------GCAGC------------AGCAGCAGCTGCA-GCA------------------------------------------------------------------GCAGCAGC---AGC------AG---CGGCAGCAGCA-------------------------------------GCAGCAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........................................................CAGC------GGCAGCAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGC---........................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1

droWil2

GCGG-CG-----GC---GGGTA--------------------------CAGCGGTGG-TGGG------TACAGCAGTGGCAGC----------------GGGTGCAGCA--------------------GTGGCAGC---GGCGGCAGCAGTGGCAGCGGCGGCAGGTACCGTAATGGATGCGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCG------------GCGGCGGGTACA-GCG------------------------------------------------------------------GTGGCAGC---GGCGGCGTGTA---CAGCGGTG-----------------------------------GTG--GGTACGG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................G------TACAGCAGTGGCAGC----------------GGGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.30	6	0	6	0	0	0
.................................................................................................................................................................................GATGCGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCG------------GCGGCG............................................................................................................................................................	21	20	0.10	2	0	0	0	2	0
.......................................................................................................................................................................................ACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCG------------GCGGCGGGTAC.......................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................ATGGATGCGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCG------------GCG...............................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................ATGCGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCG------------GCGG..............................................................................................................................................................	18	20	0.05	1	0	1	0	0	0
....................................................................................................GGTGCAGCA--------------------GTGGCAGC---GGCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.............................................................................GGCAGC----------------GGGTGCAGCA--------------------GTGGCAGC---GGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0

dp5

TTGG-GA-----GG---AGGAG--------------------------GAGTAGGAG-GTGC------TG-TCCAACAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACGTCTCTGA------------------------A----------------------------------TCACAA---------------------C----------------------------------AACAACCATATGATTGTGCCGAA----TC-CTATGTCGTCGCCCGGCAAGCCGCTCAACTGTTCC-----------------------ATGAACGATGCC---------------------------------------------------------------------AAGGTGGCAGC------AGCTGCTGCTGCAGCA----------------------------------G--CCGC--C	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTCAACTGTTCC-----------------------ATGAACG.......................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCGCTCAACTGTTCC-----------------------ATGAAC........................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GTCG-AA-----GC---AGCAG--------------------------CAACAGCAG-CAAC------AAGAACAACAACAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC---AACAACA-----------------------------------GCA--------------------------------GCAGCAGC---------AA----------------------------------GTCGAGC---C-----------------------------------------A---------GAA-G-------------------------------------CAGAAGCAGAACCAGAACCAGAAATCGATACCCATCAAGATACCATTGAGCGAGCGTTTCTCGTCGCA-----GAC------CT------CGACAGGA----------------------------------T--CGGCGGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................GC---------AA----------------------------------GTCGAGC---C-----------------------------------------A---------GAA-G-------------------------------------CAGAAGCA......................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCAGAACCAGAACCAGAAAT.....................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCGTCGCA-----GAC------CT------....................................................	18	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGAACCAGAACCAGAAAT.....................................................................................................................	22	2	1.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC---------AA----------------------------------GTCGAGC---C-----------------------------------------A---------GA......................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAACCAGAACCAGAA.......................................................................................................................	18	20	0.15	3	3	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAACCAGAACCAGAA.......................................................................................................................	19	14	0.07	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAACCAGAACCAGA........................................................................................................................	18	17	0.06	1	1	0	0	0	0	0
.............................................................................AACAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC---AACAACA-----------------------------------GCA--------------------------------GCA........................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0
...............................................................................CAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC---AACAACA-----------------------------------GCA--------------------------------GCA........................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
................................................................................AAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC---AACAACA-----------------------------------GCA--------------------------------GCAGCAGC---------..........................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................C---AACAACA-----------------------------------GCA--------------------------------GCAGCAGC---------A.........................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0

droAna3

CAATG-C-----AG--CCG-----------------------------TGGCAGCGG-CGGC------GGCATCAGCGGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---AGCGGCGGG----------------------------CATCAACAACAGTTATC-------------TG--------------------------------------CCGCCGTCG------CCGCAGCA------C---C-----------------------------------------A---------CC-------AG------------C-------------A------------------------------------------------------------------GCATCGTT---TAT------TC---CAGCAGGCGCC---C---------TACAGTATGCCCCAAGCGACCC--CCTACCG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................GCGGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---AGCGGCGGG----------------------------CA.................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.......................................................................ATCAGCGGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---AGCGGC..................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................................................................................AGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---AGCGGCGGG----------------------------CAT................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ACAGTTATC-------------TG--------------------------------------CCGCCGTCG------CC............................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
............AG--CCG-----------------------------TGGCAGCGG-CGGC------GGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.......................................................................ATCAGCGGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---AGCGGCGGG----------------------------C..................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
..........................................................................AGCGGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---AGCGGCGGG----------------------------G..................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0
............................................................................CGGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---AGCGGCGG................................................................................................................................................................................................................................................................................................................................................................................	18	9	0.22	2	2	0	0	0	0	0

droBip1

GCAG-CA-----GC---AACAG--------------------------CAACAGCAG-CGAG------TGCAGCAGCAGCAGCGCGAGAGTCTGGC---------------CACCGCCATGGCGGCTGGGATGCGGCATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCG--------------CTC-------C-----------------------------------------T---------GCC-GCCACCGGAGGCCATGCACCCGA------A-TCC------------------------------------CTTCCA------------------------GTTGCTGA---GAA------TG---CCGCTGCCGCC----------------------------------G--GCCCTGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCAGA-T-----CA---TTCCG--------------------------CCGCAGCAG-CAAC------AGCAACAACAACAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGGCAG------------------------G----------------------------------------------------------------------------------------------------------ACATGGAGATGGA----AG-CTATCAGCAGTATCGAGGAGCCAGTCAAATGC-T-G-----------------GCCGCAAGAAGCAATCT------------------------------------------------------------------GGTGATGC---AGC------AG---CAGCAGCAGCA----------------------------------GCAACACCAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCAG-CA-----GC---AGCAG--------------------------CAACAGCAG-CAGC------AACAGCAGCAGGAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---AACGCCG---------------CTT-------------------------------------CGAGCAGGAGCAACAGGAGCAGCAGCGGCGCAAGGAGGA--GCAACAGCAGCAG--------------ATC-------C-----------------------------------------A---------GCG-CCAGCA----------------------------------------------------------------------------------------------GCAGCACC---TGC------AG---CAGCTGCAGCA----------------------------------G--CAGCAGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCAC-CA-----GC---AGCAG--------------------------TCGCACCAC-CAGC------A------------GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCCTCGCACC------------------------A--CCAACAGCA--------------------------------GTCGCCCC---------ATGGCCAGT-------------------------------------CCATGAACATGTATAAATCGCCGGCTTACTTGCAACG--------------ATCC-GAGATCGAAGATCAAGT------------A-TCC------------------------------------------------------------------GCAGCGGC---GGC------CG---TGGCAGCAGCG----------------------------------G--CGGCCAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTCGG-ATACCTACAATAG---------------------------------------CAGT------AGCAGCAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCCAGTTTGGAGCCCTGGTCCACTTGGTCCACGATC--GAC-----------------AGCTTTAGCAGCAGC---------AGC---------AGCAGCACA---ACAGCA----------------------------------ACA-----------------------------------------------------------------------------TCTGACGACAGT-----------------------------------------------A----------TTAGCAGC---AGCAGCAACTA---CGATGCC-----------------------------------TGGG--CCACCTA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCAGA-C-----GG---TGGCG--------------------------CAGCAGCAG-CAAC------AGCAACA------AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCCGTGGCGC------------------------A--GCAACAGCATGCGGC-----------TCAGCAGCAGCA---------------------G----------------------------------GTCAAGCAACTGGAGGAACTGAA----TC-GGGCTGTGATGC------TCC-A---------GCG-CTTTCA---------------------------------------------------------------------GGCTGCCCGGCAGCCGGCAAACCCTGGCGCTGC---GGC------AG---CGGCTGCGGCG----------------------------------G--CCGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTCAGCA-----GC---AG-----------------------------CAACTTCAG-CAGC------AACAACAACAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---AACAGCTTA------------------------TTC--AAC--------------------------AGCAACAGCTGGAGCAGC---------AGAACTACT---AT----------------------------------ACGTACA-----------------------------------------------------------------------------TGCAACAGCAGC-----------------------------------------------A----------GGA---------GA------AC---CAACAACAGCAGCCGCT-------------------------GGAA--CCTCCAA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CTAG-CG-----TC---GGCAG--------------------------CGACGCCAG-CAGC------ATGTCCAAAACAAGC---------------------------------------------------------------------AGCGGG-------------------------------------------AATCCGAG---------------------------------------------------------------TGCAGCAGCAACAC--------------A------------------------AGC--AGC--------------------------AG--------------------------------------CAGCAGCCG--------------CTG-------C-----------------------------------------A---------GCA-GCAGCAG------------CAGCA----------------------------------------------------------------------------------------AG------TG---CAACAAATGC---CGCC-------------------------AATG--CCGCCGA	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCAG-CA-----GC---AGCAA--------------------------CAACAACAG-CCGC------CGCAGCAACAGCAGC---------------------------------------------------------ATCAGAACATACAGCCACAAGGGCAAAACACGCAACCAGCGCGTCAGGTGCGCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCGATA---A-CCA------------------------------------------------------------------AATGCAGG---AAC------TG----------------------------------------------------CGACAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................AAGGGCAAAACACGCAACCAGCGCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................TACAGCCACAAGGGCAAAACACGCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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droSim2

TTTGG-CGGCCAGC---AGCCGTACAAGAAGCAACGGCTTAGCGAGGCCAAT----G-CCAA--------CAATATGAATCACCTGCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACACCCGCAGCAGCAACAC--------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------A---------G--------------------------------------------------------------------------------------------------------CAGCAGC---AGCAGC---AG---CAGCAACATCA--------------------------------GGC--GCACCAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................GTACAAGAAGCAACGGCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---AG---CAGCAACATCA--------------------------------GGC--G......	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................AC--------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------A---------G--------------------------------------------------------------------------------------------------------CAGCAGC---AGCAGC---AG---CAGCAACAT..............................................	29	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ATCAA-C-----AA--CAG-----------------------------CAGCAGCAG-CATC------AGCAACAACAGCAAC----------------AGTTCCAGCA--------------------GCAACAGCAACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------TTC--A-----------------------CC---AGCAGCA--------------------------------ACAGGATCAA--------------CTG---------------------------CAGTTCCAGCAACAGCAT-------------CTC-C-----------------AGCTTTATGCACA-CGC------------------------------------------------------------------ACCACTGAAGCAAC------AG------CAATTGCA----------------------------------G--CAGCAGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC------AG------CAATTGCA----------------------------------G--CAGCAG.	19	1	1.00	1	0	0	1	0
...................................................................................................................................AACAGCAACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------TTC--A-----------------------CC---AGCAG................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
....................................................................................................................................ACAGCAACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------TTC--A-----------------------CC---AGCAGCA--------------------------------..............................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
...................................................................................................AGTTCCAGCA--------------------GCAACAGCAACAT--------------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------.......................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
..CAA-C-----AA--CAG-----------------------------CAGCAGCAG-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	2	0
..................G-----------------------------CAGCAGCAG-CATC------AGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	19	0.05	1	0	0	1	0
................CAG-----------------------------CAGCAGCAG-CATC------AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0

droYak3

ACAG-CA-----GC---AGCAA--------------------------CTCAAGGAG-CGAG--------CATCAGCAGTAGCCAGCAACTTTAGCCTCAGTTGCAGC-------GAACTGGCCATTGAGCAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAG------------------------C-----------------------------------------A---------GCA-GCAGCAA------------CAGGG----------------------------------------------------------------------------------------CG------TC---CTGCAGCTGC---CGGCCACGCCCTCC---------------AGCA--GCTCCAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................AACTTTAGCCTCAGTTGCAGC-------GAACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...G-CA-----GC---AGCAA--------------------------CTCAAGGAG-CGAG--------CATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................CAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAG------------------------C-----------------------------------------A---------GCA-GCAGC...............................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG------------------------C-----------------------------------------A---------GCA-GCAGCAA------------CAGG.............................................................................................................................................................	21	18	0.06	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................CAGCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAG------------------------C-----------------------------------------A---------GCA-GCAGCA..............................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CA-G-CA-----GC---AG-----------------------------CAGCAGCAG-CAGC------A---TCAGAACATGC---------------------------------------------------------------------AGCCACAAGGGCAAAACACACAGCCGACGCGTCAGGTGCGCACGCGCGATAACCAAATGCAGGATTTGCGACAGTTTGGCCAGGACTTCCAACTGGCCCCGAGCAACACTTCGCCACCCCAGCAGCAGCAGCAA--------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------A---------GC-------------------------------A-GCA------------------------------------------------------------------GCAGCAGC---AAG------TG---CAGCAGCAGCA-------------------------------------ACAGCGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................................................................................GTCAGGTGCGCACGCGCGATAACCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
........................................................................TCAGAACATGC---------------------------------------------------------------------AGCCACAAGGGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
....................................................................A---TCAGAACATGC---------------------------------------------------------------------AGCCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
.....................................................................................................................................................................................CGTCAGGTGCGCACGCGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
....................................................AGCAG-CAGC------A---TCAGAACATGC---------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................GACGCGTCAGGTGCGCACGCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................AACACACAGCCGACGCGTCAGGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................CCCGAGCAACACTTCGCCACCCC............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------GCAGCAGC---AAG------TG---CAGCAGCA...............................................	22	2	0.50	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------------------------------------A---------GC-------------------------------A-GCA------------------------------------------------------------------GCAGCAGC---AAG------TG---CAGC...................................................	25	2	0.50	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---AAG------TG---CAGCAGCAG..............................................	19	4	0.25	1	1	0	0	0	0	0	0
......A-----GC---AG-----------------------------CAGCAGCAG-CAGC------A---TC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	2	0	0
..............................................................................................................................................................................................................................................................................CCAGCAGCAGCAGCAA--------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------A---------GC-------------------------------.......................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0
............GC---AG-----------------------------CAGCAGCAG-CAGC------A---TCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAA--------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------------------A---------GC-------------------------------A-GCA------------------------------------------------------------------GCA.............................................................................	25	20	0.05	1	0	0	0	1	0	0	0
............GC---AG-----------------------------CAGCAGCAG-CAGC------A---TC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
...G-CA-----GC---AG-----------------------------CAGCAGCAG-CAGC------A---TC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0
...G-CA-----GC---AG-----------------------------CAGCAGCAG-CAGC------A---TCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0	0
.A-G-CA-----GC---AG-----------------------------CAGCAGCAG-CAGC------A---....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0

dmo_2243

scaffold_6603:1297-1363 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads