ID:

dmo_224

 Coordinate:

scaffold_2641:1787-1874 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.4 -31.3 -31.1

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dmo_224  scaffold_2641:1788-1813 -
  2. scaffold_6462:6924-6949 -
  3. scaffold_6498:3317187-3317212 +
star
  1. scaffold_301:120-146 -
  2. scaffold_343:575-601 -
  3. scaffold_1866:1290-1316 -
  4. dmo_224  scaffold_2641:1848-1874 -
  5. scaffold_2703:2706-2732 -
  6. scaffold_2981:1187-1213 -
  7. scaffold_4310:1215-1241 -
  8. scaffold_6308:2652561-2652587 -
  9. scaffold_6339:7688-7714 -
  10. scaffold_6431:46735-46761 -
  11. scaffold_6431:76568-76594 -
  12. scaffold_6462:6984-7010 -
  13. dmo_222  scaffold_6482:608143-608169 -
  14. scaffold_6482:2141017-2141043 -
  15. scaffold_6498:2595997-2596023 -
  16. scaffold_6500:29785880-29785906 -
  17. scaffold_6536:84-110 -
  18. scaffold_6541:2123727-2123753 -
  19. scaffold_6541:2157731-2157757 -
  20. scaffold_6693:14106-14132 -
  21. scaffold_1667:3019-3045 +
  22. scaffold_1984:98-124 +
  23. scaffold_2582:4531-4557 +
  24. scaffold_3241:602-628 +
  25. scaffold_3470:255-281 +
  26. scaffold_4302:247-273 +
  27. scaffold_4386:8052-8078 +
  28. scaffold_6344:59409-59435 +
  29. scaffold_6345:113863-113889 +
  30. scaffold_6364:46453-46479 +
  31. scaffold_6437:38523-38549 +
  32. scaffold_6482:299757-299783 +
  33. scaffold_6500:25000417-25000443 +
  34. scaffold_6540:520538-520564 +
  35. scaffold_6541:1575249-1575275 +
  36. scaffold_6680:8889578-8889604 +
  37. scaffold_6680:23727474-23727500 +
  38. scaffold_6785:1360-1386 +

Sense Strand Reads

AACTTCTGTGGCTTGTAGGTGTCATCGTTTGTTGCATTAATATAGCTGATTGCATCTGTTGAGGAAGTTGTCGATCGCTTCATTGTTGCCGAGGCCAAAGCCTCCAAGTGATAGACGTCCTTCTGTTGATGCTGATGCCTTATTGTGCCTATTGTTTCGCTTGTAGTGGTTATTGTTGTTTCCTTTAA
***********************************..(((((..((.....(((((......(((((.((((.(((((((..........(((((....))))).))))))).))))..)))))...)))))....))..))))).......************************************ 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body
...............................................................................................................TAGACGTCCTTCTGTTGATGCTGATG................................................... 26 0 3 23.67 71 57 2 7 5
...............................................................................................................TAGACGTCCTTCTGTTGATGCTGAT.................................................... 25 0 3 20.67 62 54 6 0 2
...............................................................................................................TAGACGTCCTTCTGTTGATGCTGATGCC................................................. 28 0 2 17.50 35 17 17 0 1
...............................................................................................................TAGACGTCCTTCTGTTGATGCTGATGC.................................................. 27 0 3 11.67 35 19 4 8 4
...............................................................................................................TAGACGTCCTTCTGTTGATGCTG...................................................... 23 0 3 10.67 32 23 0 5 4
...............................................................................................................TAGACGTCCTTCTGTTGATGCTGA..................................................... 24 0 3 10.00 30 27 2 0 1
..................................................TGCATCTGTTGAGGAAGTTGTCGATCG............................................................................................................... 27 0 20 3.65 73 73 0 0 0
...........................................................................................................................................TTATTGTGCCTATTGTTTCGCTTG......................... 24 0 20 3.55 71 63 8 0 0
..................................................TGCATCTGTTGAGGAAGTTGTCG................................................................................................................... 23 0 20 2.95 59 54 0 0 5
..................................................TGCATCTGTTGAGGAAGTTGTCGATC................................................................................................................ 26 0 20 2.20 44 0 44 0 0
...............................................................................................................TAGACGTCCTTCTGTTGATGC........................................................ 21 0 3 2.00 6 1 3 2 0
...............................................................................................................TAGACGTCCTTCTGTTGATGCT....................................................... 22 0 3 1.33 4 3 1 0 0
...........................................................................................................................................TTATTGTGCCTATTGTTTCGCTTGTAG...................... 27 0 20 1.20 24 24 0 0 0
........................................................................................................................TTCTGTTGATGCTGATGCCTTATTG........................................... 25 0 13 1.15 15 15 0 0 0
...........................................................................................................................................TTATTGTGCCTATTGTTTCGCTTGT........................ 25 0 20 1.10 22 17 3 2 0
................................................................................................................AGACGTCCTTCTGTTGATGCTG...................................................... 22 0 3 1.00 3 3 0 0 0
..................................................TTCATCTGTTGAGGAAGTTGTCGATCGC.............................................................................................................. 28 1 20 1.00 20 0 20 0 0
...............................................................................................................TAGACGTCCTTCTGTTGATGCTGATGCCT................................................ 29 0 2 1.00 2 1 1 0 0
................................................................................................................AGACGTCCTTCTGTTGATGCTGATG................................................... 25 0 3 1.00 3 3 0 0 0
...............................................................................................................TAGTCGTCCTTCTGTTGATGCTGATGCC................................................. 28 1 2 1.00 2 0 2 0 0
.....................................................................................................................TCCTTCTGTTGATGCTGATGCCTTA.............................................. 25 0 13 0.85 11 11 0 0 0
..................................................TTCATCTGTTGAGGAAGTTGTCGATC................................................................................................................ 26 1 20 0.70 14 0 14 0 0
................................................................................................................AGACGTCCTTCTGTTGATGCTGA..................................................... 23 0 3 0.67 2 2 0 0 0
...............................................................................................................TAGACGTCCTTCTGTTGATGCTGATA................................................... 26 1 3 0.67 2 1 1 0 0
................................................................................................................AGACGTCCTTCTGTTGATGCTGATGC.................................................. 26 0 3 0.67 2 2 0 0 0
...............................................................................................................TGGACGTCCTTCTGTTGATGCTGATGCC................................................. 28 1 3 0.67 2 0 2 0 0
...............................................................................................................TAGACGTCCTTCTGTTGATGCTGATC................................................... 26 1 3 0.67 2 2 0 0 0
...............................................................................................................TAGACGTCCTTCTGTTGATGCTGAC.................................................... 25 1 3 0.67 2 0 2 0 0
.....................................................................................................................TCCTTCTGTTGATGCTGATGCCTTATTG........................................... 28 0 12 0.67 8 8 0 0 0
..................................................TTCATCTGTTGAGGAAGTTGTCGAT................................................................................................................. 25 1 20 0.60 12 0 12 0 0
................................................................................................................AGACGTCCTTCTGTTGATGCTGATGCC................................................. 27 0 2 0.50 1 1 0 0 0
...............................................................................................................TAGACGTCCTTCTGTTGATGCTGATT................................................... 26 1 4 0.50 2 1 1 0 0
...............................................................................................................TAGACGTCCTTCTGTTGATGCCGATGCC................................................. 28 1 2 0.50 1 1 0 0 0
...............................................................................................................TAGACGTCCTTCTGTTGATGCTTATGCC................................................. 28 1 2 0.50 1 0 1 0 0
...............................................................................................................TACACGTCCTTCTGTTGATGCTGATGCC................................................. 28 1 2 0.50 1 0 1 0 0
...............................................................................................................TAGACGTCCTTCTGTTGATGCTGATGCCA................................................ 29 1 2 0.50 1 0 1 0 0
...............................................................................................................TAGACGTCCTTCTGTTGATGCTGATGCCC................................................ 29 1 2 0.50 1 0 1 0 0
...............................................................................TCATTGTTGCCGAGGCCAAAGCCTCCAA................................................................................. 28 0 12 0.50 6 3 3 0 0
...............................................................................................................TAGACGTCCTTCTGTTGATGCTGAGGCCT................................................ 29 1 2 0.50 1 0 1 0 0
..............................................................................TTCATTGTTGCCGAGGCCAAAGCCTCCAA................................................................................. 29 0 12 0.50 6 3 3 0 0
...................................................................................................................CTTCCTTCTGTTGATGCTGATGCC................................................. 24 1 2 0.50 1 0 1 0 0
.................................................................................................................................................TGCCTATTGTTTCGCTTGTAGTGGT.................. 25 0 20 0.45 9 4 1 4 0
.....................TCATCGTTTGTTGCATTAATATAGCTG............................................................................................................................................ 27 0 12 0.42 5 5 0 0 0
..................................................TGCATCTGTTGAGGAAGTTGTCGAC................................................................................................................. 25 1 20 0.40 8 0 8 0 0
...................................................GCATCTGTTGAGGAAGTTGTCGATC................................................................................................................ 25 0 20 0.40 8 8 0 0 0
..............................................................................TTCATTGTTGCCGAGGCCAAAGCC...................................................................................... 24 0 13 0.38 5 2 3 0 0
............................................................................................................................................TATTGTGCCTATTGTTTCGCTTG......................... 23 0 20 0.35 7 7 0 0 0
...............................................................................................................TAGACGTCATTATGTTTATGCTGATG................................................... 26 3 3 0.33 1 0 0 1 0
...............................................................................................................TAGACGTCCTTCTGTTGATGCTGC..................................................... 24 1 3 0.33 1 0 1 0 0
...............................................................................................................TAGACGTCCTACTGTTGATGCC....................................................... 22 2 3 0.33 1 0 1 0 0
...............................................................................................................TAGACGTCCTTCTGTTGATGCTGATGCT................................................. 28 1 3 0.33 1 1 0 0 0
................................................................................................................AGACGTCCTTCTGTTGATGCTGAT.................................................... 24 0 3 0.33 1 1 0 0 0
............................................................................................................TTATAGACGTCCTTCTGTTGATGCT....................................................... 25 1 3 0.33 1 0 1 0 0
...............................................................................................................TAGACGTCCTTCTGTTGATG......................................................... 20 0 3 0.33 1 1 0 0 0
...............................................................................................................TAGACGTCCTTGTGTTGATGCTGAT.................................................... 25 1 3 0.33 1 1 0 0 0
.....................TCATCGTTTGTTGCATTAATATAGCTGA........................................................................................................................................... 28 0 12 0.33 4 4 0 0 0
...............................................................................................................TAGACGTCCTTCTGTCGATGCTGATG................................................... 26 1 3 0.33 1 1 0 0 0
...............................................................................................................TACACGTCCTTCTGTTGATGCTGATGC.................................................. 27 1 3 0.33 1 0 1 0 0
...............................................................................................................TAGACGCCCTTCTGTTGATGCTGA..................................................... 24 1 3 0.33 1 0 1 0 0
...............................................................................................................TGGACGCCCTTCTGTTGATGCTGATGCC................................................. 28 2 3 0.33 1 0 1 0 0
...............................................................................................................TAGACGTCCTTCTGTTGATGCTGT..................................................... 24 1 3 0.33 1 1 0 0 0
...............................................................................................................TAGACGTCCTTCTGTTGATGCTGATGA.................................................. 27 1 3 0.33 1 0 0 1 0
.....................................................................................................................TCCTTCTGTTGATGCTGATGCCTTATT............................................ 27 0 13 0.31 4 2 2 0 0
...............................................................................TCATTGTTGCCGAGGCCAAAGCCT..................................................................................... 24 0 13 0.31 4 0 4 0 0
.....................................................................................................................TCCTTCTGTTGATGCTGATGCCTT............................................... 24 0 13 0.31 4 4 0 0 0
.....................................................................................................................TCCTTCTGTTGATGCTGATGCCTTAT............................................. 26 0 13 0.31 4 3 1 0 0
............................................................................................................................................TATTGTGCCTATTGTTTCGCTTGTAG...................... 26 0 20 0.30 6 6 0 0 0
..................................................................................................................................................GCCTATTGTTTCGCTTGTAGTGGTTA................ 26 0 20 0.30 6 2 1 0 3
.................................................................................................................................................TGCCTATTGTTTCGCTTGTAGTGGTTA................ 27 0 20 0.30 6 5 0 1 0
..............................................................................................................................................TTGTGCCTATTGTTTCGCTTGTAG...................... 24 0 20 0.30 6 6 0 0 0
.............................................................................................................................TTGATGCTGATGCCTTATTGTGCC....................................... 24 0 11 0.27 3 3 0 0 0
........................TCGTTTGTTGCATTAATATAGCTGAT.......................................................................................................................................... 26 0 12 0.25 3 3 0 0 0
..............................................................................................................................................TTGTGCCTATTGTTTCGCTTGTAGTGG................... 27 0 20 0.25 5 5 0 0 0
..............................................................................................................................................TTGTGCCTATTGTTTCGCTTGTAGTGGT.................. 28 0 20 0.25 5 4 1 0 0
...............................................................................................................TGGTCGTCCTTCTGTTGATGCTGA..................................................... 24 2 4 0.25 1 0 1 0 0
...............................................................................................................TGGACGTCCTTCTGTTGATGCTGAC.................................................... 25 2 4 0.25 1 0 1 0 0
.................................................................................................................................................TGCCTATTGTTTCGCTTGTAGTGG................... 24 0 20 0.20 4 4 0 0 0
..................................................TGCTTCTGTTGAGGAAGTTGTCGATCGC.............................................................................................................. 28 1 20 0.20 4 0 4 0 0
...........................................................TGAGGAAGTTGTCGATCGCTTCATTGT...................................................................................................... 27 0 15 0.20 3 2 1 0 0
.............................................................................................................................TTGATGCTGATGCCTTATTGTGCCTA..................................... 26 0 11 0.18 2 2 0 0 0
.........................................................................................................................TCTGTTGATGCTGATGCCTTATTGTG......................................... 26 0 11 0.18 2 2 0 0 0
........................................................................................................................................................TGTTTCGCTTGTAGTGGTTATTGT............ 24 0 17 0.18 3 1 2 0 0
.....................TCATCGTTTGTTGCATTAATATAGCTGAT.......................................................................................................................................... 29 0 12 0.17 2 2 0 0 0
........................................................................................................................TTCTGTTGATGCTGATGCCTTATTGT.......................................... 26 0 12 0.17 2 2 0 0 0
..............................................................................TTCATTGTTGCCGAGGCCAAAGCCTCCA.................................................................................. 28 0 13 0.15 2 2 0 0 0
.........................................................................................................................TCTGTTGATGCTGATGCCTTATTG........................................... 24 0 13 0.15 2 2 0 0 0
.....................TCATCGTTTGTTGCATTAATATAGC.............................................................................................................................................. 25 0 13 0.15 2 1 1 0 0
..............................................................................TTCATTGTTGCCGAGGCCAAAGCCTCC................................................................................... 27 0 13 0.15 2 0 2 0 0
..............................................................................TGCATTGTTGCCGAGGCCAAAGCCTCC................................................................................... 27 1 13 0.15 2 0 2 0 0
...............................................................................TCATTGTTGCCGAGGCCAAAGCC...................................................................................... 23 0 13 0.15 2 0 2 0 0
................................TGCATTAATATAGCTGATTGCATCTG.................................................................................................................................. 26 0 13 0.15 2 2 0 0 0
...........................................................................................................................................TTATTGTGCCTATTGTTTCGCT........................... 22 0 20 0.15 3 2 1 0 0
..................................................................................................................................................GCCTATTGTTTCGCTTGTAGTGGTT................. 25 0 20 0.15 3 1 1 0 1
..................................................TGAATCTGTTGAGGAAGTTGTCGATC................................................................................................................ 26 1 20 0.15 3 0 3 0 0
..................................................TTCATCTGTTGAGGAAGTTGTCGATCGCT............................................................................................................. 29 1 20 0.15 3 0 3 0 0
...........................................................................................................................................TTATTGTGCCTATTGTTTCGCTTGTA....................... 26 0 20 0.15 3 2 1 0 0
........................................................TGTTGAGGAAGTTGTCGATCGCTTC........................................................................................................... 25 0 20 0.15 3 1 0 1 1
..................................................TTAATCTGTTGAGGAAGTTGTCGA.................................................................................................................. 24 2 20 0.15 3 0 3 0 0
........................................................................................................................TTCTGTTGATGCTGATGCC................................................. 19 0 14 0.14 2 1 1 0 0
..............................................................................TTCATTGTTGCCGAGGCCAAAGC....................................................................................... 23 0 14 0.14 2 0 2 0 0
...........................................................................................................................................................TTCGCTTGTAGTGGTTATTGTTGTTTC...... 27 0 16 0.13 2 2 0 0 0
...........................................................................................................................................................TTCGCTTGTAGTGGTTATTGTTGT......... 24 0 17 0.12 2 1 1 0 0
...........................................................................................................................................................TTCGCTTGTAGTGGTTATTGTTGTT........ 25 0 17 0.12 2 2 0 0 0
.....................................................................................................................................................TATTGTTTCGCTTGTAGTGGTTATTG............. 26 0 17 0.12 2 2 0 0 0
.................................................................................................................................................TGCCTATTGTTTCGCTTGTAGTGGC.................. 25 1 20 0.10 2 0 2 0 0
......................................................................................TGCCGAGGCCAAAGCCTCCAAGT............................................................................... 23 0 10 0.10 1 1 0 0 0
.................................................TTGCATCTGTTGAGGAAGTTGTC.................................................................................................................... 23 0 20 0.10 2 0 2 0 0
..............................................................................................................................................TTGTGCCTATTGTTTCGCTTGTAGTG.................... 26 0 20 0.10 2 2 0 0 0
..................................................TGCATCTGTTGAGGAAGTTGGCGATC................................................................................................................ 26 1 20 0.10 2 0 2 0 0
...............................................................................................................................................TGTGCCTATTGTTTCGCTTGTAGTGG................... 26 0 20 0.10 2 2 0 0 0
......................................................TCTGTTGAGGAAGTTGTCGATCGCTT............................................................................................................ 26 0 20 0.10 2 0 2 0 0
.................................................................................................................................................TGCCTATTGTTTCGCTTGTAGTGGTT................. 26 0 20 0.10 2 1 1 0 0
..................................................TGCATCTGTTGAGGAAGTTGTCGATCGA.............................................................................................................. 28 1 20 0.10 2 2 0 0 0
...........................................................................................................................................TGATTGTGCCTATTGTTTCGCTTGT........................ 25 1 20 0.10 2 0 2 0 0
........................................................................................................................................GCCTTATTGTGCCTATTGTTTCGCTTG......................... 27 0 20 0.10 2 2 0 0 0
...................................................................................TGTTGCCGAGGCCAAAGCCTCCAAG................................................................................ 25 0 11 0.09 1 1 0 0 0
..................................................................................................................................GCTGATGCCTTATTGTGCCTATTG.................................. 24 0 11 0.09 1 1 0 0 0
........................................................................................................................TTCTGTTGATGCTGATGCCTTATTGTGA........................................ 28 1 11 0.09 1 1 0 0 0
...........................................................................................................................TGTTGATGCTGATGCCTTATTGTGCC....................................... 26 0 11 0.09 1 0 1 0 0
...TTCTGTGGCTTGTAGGTGTCATCG................................................................................................................................................................. 24 0 11 0.09 1 1 0 0 0
AACTTCTGTGGCTTGTAGGTGT...................................................................................................................................................................... 22 0 11 0.09 1 1 0 0 0
...........................................................................................................................TGTTGATGCTGATGCCTTATTGTGCCTA..................................... 28 0 11 0.09 1 1 0 0 0
...............................................................................................................................GATGCTGATGCCTTATTGTGCCTAT.................................... 25 0 11 0.09 1 1 0 0 0
..................................................................................................................................GCTGATGCCTTATTGTGCCTATT................................... 23 0 11 0.09 1 1 0 0 0
.................................................................................................................................TGCTGATGCCTTATTGTGCCTATTG.................................. 25 0 11 0.09 1 1 0 0 0
.........................CGTTTGTTGCATTAATATAGCTGATC......................................................................................................................................... 26 1 12 0.08 1 1 0 0 0
.........................CGTTTGTTGCATTAATATAGCTGA........................................................................................................................................... 24 0 12 0.08 1 1 0 0 0
........................TCGTTTGTTGCATTAATATAGCTGATTGC....................................................................................................................................... 29 0 12 0.08 1 0 1 0 0
.......................................ATATAGCTGATTGCATCTGTTGAGGAAG......................................................................................................................... 28 0 12 0.08 1 1 0 0 0
........................................TATAGCTGATTGCATCTGTTGAGGAAGT........................................................................................................................ 28 0 12 0.08 1 0 1 0 0
.......................ATCGTTTGTTGCATTAATATAGCTG............................................................................................................................................ 25 0 12 0.08 1 1 0 0 0
........................................TATAGCTGATTGCATCTGTTGAGGAAG......................................................................................................................... 27 0 12 0.08 1 1 0 0 0
..........................GTTTGTTGCATTAATATAGCTGATTG........................................................................................................................................ 26 0 12 0.08 1 1 0 0 0
.................................................................................................................................TGATGATGCCTTATTGCGCCTATTGT................................. 26 2 12 0.08 1 0 1 0 0
.......................ATCGTTTGTTGCATTAATATAGCTGAT.......................................................................................................................................... 27 0 12 0.08 1 1 0 0 0
........................TCGTTTGTTGCATTAATATAGCTGA........................................................................................................................................... 25 0 12 0.08 1 1 0 0 0
.........................................................................................................................TCTGTTGATGCTGATGCCTTATTGT.......................................... 25 0 12 0.08 1 1 0 0 0
........................TCGTTTGTTGCATTAATATAGCTGATCC........................................................................................................................................ 28 2 12 0.08 1 1 0 0 0
.......................................ATATAGCTGATTGCATCTGTTGAG............................................................................................................................. 24 0 13 0.08 1 1 0 0 0
.....................................................................................................................TCCTTCTGTTGATGCTGATCCCTT............................................... 24 1 13 0.08 1 1 0 0 0
....................GTCATCGTTTGTTGCATTAATATAGC.............................................................................................................................................. 26 0 13 0.08 1 0 1 0 0
...............................................................................TCATTGTTGCCGAGGCCAAAGCCTCC................................................................................... 26 0 13 0.08 1 1 0 0 0
.................................................................................ATTGTTGCCGAGGCCAAAGCC...................................................................................... 21 0 13 0.08 1 0 1 0 0
...............................................................................................................TAGAGGTCCTTCTGTTGATGCTGATGC.................................................. 27 1 13 0.08 1 0 1 0 0
.........................CGTTTGTTGCATTAATATAGC.............................................................................................................................................. 21 0 13 0.08 1 1 0 0 0
......................................................................................................................CCTTCTGTTGATGCTGATGCCTTA.............................................. 24 0 13 0.08 1 1 0 0 0
......................................................................................................................CCTTCTGTTGATGCTGATGCC................................................. 21 0 13 0.08 1 1 0 0 0
..............................................................................TGCATTGTTGCCGAGGCCAAAGCC...................................................................................... 24 1 13 0.08 1 0 1 0 0
......................................................................................................................CCTTCTGTTGATGCTGATGCCTT............................................... 23 0 13 0.08 1 1 0 0 0
..............................................................................TTAATTGTTGCCGAGGCCAAAGCC...................................................................................... 24 1 13 0.08 1 0 1 0 0
..............................................................................TTCATTGTTGCGGAGGCCAAAGCC...................................................................................... 24 1 13 0.08 1 1 0 0 0
...........................................................................CGCTTCATTGTTGCCGAGGCCAAAGCC...................................................................................... 27 0 13 0.08 1 0 1 0 0
.....................TCATCGTTTGTTGCATTAATATAGCT............................................................................................................................................. 26 0 13 0.08 1 1 0 0 0
..........................................TAGCTGATTGCATCTGTTGAGG............................................................................................................................ 22 0 13 0.08 1 1 0 0 0
..................................................................................TTGTTGCCGAGGCCAAAGCCTCCAA................................................................................. 25 0 13 0.08 1 1 0 0 0
..................................................................................TTGGTGCCGAGGCCAAAGCCTCCAA................................................................................. 25 1 13 0.08 1 0 1 0 0
......................CATCGTTTGTTGCATTAATATAGCT............................................................................................................................................. 25 0 13 0.08 1 1 0 0 0
................................TGCATTAATATAGCTGATTGCATCTGT................................................................................................................................. 27 0 13 0.08 1 1 0 0 0
.ACTTCTGTGGCTTGTAGG......................................................................................................................................................................... 18 0 13 0.08 1 0 0 1 0
.............................................................................CTTCATTGTTGCCGAGGCCAAAGCCT..................................................................................... 26 0 13 0.08 1 0 1 0 0
......................................................................................................................CCTTCTGTTGATGCTGATGCCTTATC............................................ 26 1 13 0.08 1 1 0 0 0
...............................................................................TCATTGTTGCCGCGGCCAAAGCC...................................................................................... 23 1 13 0.08 1 0 1 0 0
................................TGCATTAATATAGCTGATTGCATCT................................................................................................................................... 25 0 13 0.08 1 1 0 0 0
.....................................................................................................................TCCTTCTGTTGATGCTAATGCCTTA.............................................. 25 1 13 0.08 1 1 0 0 0
...............................................................................TCATTGTTGCCGAGGCCAAAGCCTC.................................................................................... 25 0 13 0.08 1 1 0 0 0
..............................................................................TTCATTGTTGCCGAGGCCAAAGCCC..................................................................................... 25 1 13 0.08 1 0 1 0 0
.....................................................................................................................TCCTTCTGTTGATGCTGATGCCT................................................ 23 0 13 0.08 1 1 0 0 0
..............................................................................TTCATTGTTGCCGAGGCCAAAGCCT..................................................................................... 25 0 13 0.08 1 0 1 0 0
................................TTCATTAATATAGCTGATTGCATC.................................................................................................................................... 24 1 14 0.07 1 0 1 0 0
..............................................................................TTCTTTGTTGCCGAGGCCAAAGCCT..................................................................................... 25 1 14 0.07 1 0 1 0 0
.....................................................................................................................TCCTTCTGTTGATGCTGATG................................................... 20 0 14 0.07 1 1 0 0 0
..........................................................................................................................CTGTTGATGCTGATGCCTTAT............................................. 21 0 14 0.07 1 1 0 0 0
..................................................................................TTGTTGCCGAGGCCAAAGCCT..................................................................................... 21 0 14 0.07 1 0 1 0 0
........................................................................................................................TTCTGTTGATGCTGATGCCT................................................ 20 0 14 0.07 1 1 0 0 0
......................................................................................................................CCTTCTGTTGATGCTGATGC.................................................. 20 0 14 0.07 1 1 0 0 0
..........................................................TTCTGGAAGTTGTCGATCGCTTCATTGT...................................................................................................... 28 2 15 0.07 1 0 1 0 0
.............................................................AGGAAGTTGTCGATCGCTTCATTG....................................................................................................... 24 0 15 0.07 1 1 0 0 0
...........................................................TGAGGAAGTTGTCGATCGCTTCATTG....................................................................................................... 26 0 15 0.07 1 0 1 0 0
..............................................................................TTCATTGTTGCCGAAGCCAAAGCCT..................................................................................... 25 1 15 0.07 1 0 1 0 0
................................................................AAGTTGTCGATCGCTTCATTGTTGC................................................................................................... 25 0 15 0.07 1 1 0 0 0
...................................................................TTGTCGATCGCTTCATTGTTGCCGAGGCC............................................................................................ 29 0 15 0.07 1 1 0 0 0
............................................................................................................................................................TCGCTTGTAGTGGTTATTGTTGTTTCC..... 27 0 16 0.06 1 0 1 0 0
...........................................................................................................................................................TTCGCTTGTAGTGGTTATTGTTGTTTCC..... 28 0 16 0.06 1 1 0 0 0
.......................................................................................................................................................TTGTTTCGCTTGTAGTGGTTATTG............. 24 0 17 0.06 1 1 0 0 0
.......................................................................................................................................................TTGTTTCGCTTGTAGTGGTTATTGTTG.......... 27 0 17 0.06 1 1 0 0 0
...........................................................................................................................................................TTCGCTTGTAGTGGTTATTGTTGTTT....... 26 0 17 0.06 1 1 0 0 0
...........................................................................................................................................................TTCGCTTGTAGTGGTTATTGTTGC......... 24 1 17 0.06 1 0 1 0 0
..................................................................................................................................................GCCTATTGTTTCGCTTGTAGTGGTTATT.............. 28 0 17 0.06 1 1 0 0 0
............................................................................................................................................................TCGCTTGTAGTGGTTATTGTTGTT........ 24 0 17 0.06 1 0 1 0 0
........................................................................................................................................................TGCTTCGCTTGTAGTGGTTATTGTT........... 25 1 18 0.06 1 0 1 0 0
...................................................................................................................................................CCTATTGTTTCGCTTGTAGTGGTTA................ 25 0 20 0.05 1 0 0 0 1
............................................GCTGATTGCATCTGTTGAGGAAGTTG...................................................................................................................... 26 0 20 0.05 1 1 0 0 0
....................................................................................................................................................CTATTGTTTCGCTTGTAGTGGC.................. 22 1 20 0.05 1 0 1 0 0
.....................................................ATCTGTTGAGGAAGTTGTCGAC................................................................................................................. 22 1 20 0.05 1 0 1 0 0
..................................................TTCATCTGTTGAGGAAGTTGTCGATT................................................................................................................ 26 2 20 0.05 1 0 1 0 0
..................................................TTCATCTGTTGAGGAAGTTGTCGACCGC.............................................................................................................. 28 2 20 0.05 1 0 1 0 0
.................................................ATGCATCTGTTGAGGAAGTTGTCGATCG............................................................................................................... 28 1 20 0.05 1 1 0 0 0
...........................................................................................................................................TTATTGTGCCTATTGTTTCGCTTGC........................ 25 1 20 0.05 1 0 1 0 0
.................................................TTGCATCTGTTGAGGAAGTTGTCGAT................................................................................................................. 26 0 20 0.05 1 1 0 0 0
..................................................TGCATCTGTTGAGGAAGGTGTCGATC................................................................................................................ 26 1 20 0.05 1 0 1 0 0
.............................................CTGATTGCATCTGTTGAGGAAGTT....................................................................................................................... 24 0 20 0.05 1 0 0 0 1
..................................................................................................................................................GCCTATTGTTTCGCTTGTGGTGG................... 23 1 20 0.05 1 0 0 1 0
...............................................................................................................................................TGTGCCTATTGTTTCGCTTGTA....................... 22 0 20 0.05 1 1 0 0 0
...........................................................................................................................................TTATTGTGCCAATTGTTTCGCTTGTAC...................... 27 2 20 0.05 1 1 0 0 0
.......................................................CTGTTGAGGAAGTTGTCGATCGCT............................................................................................................. 24 0 20 0.05 1 0 1 0 0
....................................................................................................................................................CTATTGTTTCGCTTGTAGTGGTTAT............... 25 0 20 0.05 1 1 0 0 0
...........................................................................................................................................TTATTGTGCCTATTGTTTCGCTTGTC....................... 26 1 20 0.05 1 0 1 0 0
..................................................TGCATCTGTTGAGGAAGTTGTCGATCGCC............................................................................................................. 29 1 20 0.05 1 0 1 0 0
........................................................................................................................................ATTTTATTGTGCCTATTGTTTCGCT........................... 25 3 20 0.05 1 1 0 0 0
...................................................GCATCTGTTGAGGAAGTTGTCGAT................................................................................................................. 24 0 20 0.05 1 0 1 0 0
.......................................................................................................................................TGCCTTATTGTGCCTATTGTTTCGC............................ 25 0 20 0.05 1 1 0 0 0
..........................................................................................................................................CTTATTGTGCCTATTGTTTCGCTTGT........................ 26 0 20 0.05 1 1 0 0 0
..................................................TGCTTCTGTTGAGGAAGGTGTCGATCGC.............................................................................................................. 28 2 20 0.05 1 0 1 0 0
.................................................TTGCATCTGTTGAGGAAGTTGTCGATC................................................................................................................ 27 0 20 0.05 1 1 0 0 0
..............................................................................................................................................TTGTGCCTATTGTTTCGCTTGT........................ 22 0 20 0.05 1 1 0 0 0
......................................................................................................TCCAAGTGATAGACGTCCTTCTGT.............................................................. 24 0 20 0.05 1 1 0 0 0
.................................................................................................................................................TGCCTATTGTTTCGCTTGTAGTGGTTAC............... 28 1 20 0.05 1 0 1 0 0
....................................................CATCTGTTGAGGAAGTTGTCGATCGCC............................................................................................................. 27 1 20 0.05 1 0 1 0 0
.................................................TTGCATCTGTTGAGGAAGTTGTCG................................................................................................................... 24 0 20 0.05 1 1 0 0 0
..............................................................GGAAGTTGTCGATCGCTTCATT........................................................................................................ 22 0 20 0.05 1 1 0 0 0
...........................................................................................................................................TGATTGTGCCTATTGTTTCGCTTG......................... 24 1 20 0.05 1 0 1 0 0
.........................................................TTTGAGGAAGTTGTCGATCGCTT............................................................................................................ 23 1 20 0.05 1 0 0 0 1
..................................................TGAATCTGTTGAGGAAGTTGTCGA.................................................................................................................. 24 1 20 0.05 1 0 1 0 0
..................................................TCCATCTGTTGAGGAAGTTGTCGATCGC.............................................................................................................. 28 1 20 0.05 1 0 1 0 0
..................................................................................................................................................GCCTATTGTTTCGCTTGTAGTGG................... 23 0 20 0.05 1 0 1 0 0
........................................................................................................CAAGTGATAGACGTCCTTCTGTTGAT.......................................................... 26 0 20 0.05 1 0 1 0 0
..................................................TACATCTGTTGAGGAAGTTGTCGAT................................................................................................................. 25 1 20 0.05 1 0 1 0 0
..................................................TGCATCTGTTGAGGAAGTTGTCGC.................................................................................................................. 24 1 20 0.05 1 1 0 0 0
.....................................................................................................................................................TATTGTTTCGCTTGTAGTGGTTA................ 23 0 20 0.05 1 1 0 0 0
..................................................TACATCTGTTGAGGAAGTTGTCGATCGC.............................................................................................................. 28 1 20 0.05 1 0 1 0 0
..............................................................................................CCAAAGCCTCCAAGTGATAGACGTCC.................................................................... 26 0 20 0.05 1 0 0 0 1
..................................................TGAATCTGTTGAGGAAGTTGTAGA.................................................................................................................. 24 2 20 0.05 1 0 1 0 0
.................................................................................................................................................TGCCTATTGTTTCGCTTGTAG...................... 21 0 20 0.05 1 0 1 0 0
.......................................................................................................................................TGCCTTATTGTGCCTATTGTTTCGCTT.......................... 27 0 20 0.05 1 0 1 0 0
..................................................TGCATCTGCTGAGGAAGTTGTCGATC................................................................................................................ 26 1 20 0.05 1 0 1 0 0
...........................................................................................................................................TTATTGTGCCTATTGTTTCGCTTGTAGC..................... 28 1 20 0.05 1 1 0 0 0
..................................................TGCATCTGTTGAGGAAGTTGTCGATCGC.............................................................................................................. 28 0 20 0.05 1 0 0 0 1
..............................................TGATTGCATCTGTTGAGGAAGTT....................................................................................................................... 23 0 20 0.05 1 0 1 0 0
...........................................................................................................................................TTATTGTGCCTATTGTTTCCCTTG......................... 24 1 20 0.05 1 0 1 0 0
..........................................................................................................................................GTTATTGTGCCTATTGTTTCGCTTG......................... 25 1 20 0.05 1 1 0 0 0
..................................................TGCATCTGTTGAGGAAGTCGTCGATCGC.............................................................................................................. 28 1 20 0.05 1 0 1 0 0
.........................................................................................................................................TCTTATTGTGCCTATTGTTTCGCTT.......................... 25 1 20 0.05 1 0 1 0 0
......................................................TCTGTTGAGGAAGTTGTCGATCGCTTCA.......................................................................................................... 28 0 20 0.05 1 0 1 0 0
..................................................TGCATCTGTTGGGGAAGTTGT..................................................................................................................... 21 1 20 0.05 1 1 0 0 0
..............................................................................................................................................TTGTGCCTATTGTTTCGCTTGTAGTGGC.................. 28 1 20 0.05 1 0 1 0 0
..................................................TTCATCTGTTGAGGAAGTTGTC.................................................................................................................... 22 1 20 0.05 1 0 1 0 0
......................................................................................................TCCAAGTGATAGACGTCCTTCTGTTGA........................................................... 27 0 20 0.05 1 1 0 0 0
...................................................................................................................................................................TAGTGGTTATTGTTGTTTCCT.... 21 0 20 0.05 1 0 1 0 0
...............................................................................................................................................TGTGCCTATTGTTTCGCTTGTAGTGGT.................. 27 0 20 0.05 1 1 0 0 0
.................................................................................................................................................TCCCTATTGTTTCGCTTGTAGTGGTT................. 26 1 20 0.05 1 0 0 0 1
...........................................................................................................................................CTATTGTGCCTATTGTTTCGCTTGT........................ 25 1 20 0.05 1 0 0 1 0
..................................................TGCATCTGTTGAGGAAGTAGTCGAT................................................................................................................. 25 1 20 0.05 1 1 0 0 0
...........................................................................................................................................TGATTGTCCCTATTGTTTCGCTT.......................... 23 2 20 0.05 1 0 1 0 0
..................................................TGCATCTGCTGAGGAAGTTGTCGATCGC.............................................................................................................. 28 1 20 0.05 1 0 1 0 0
...............................................................................................................................................TGTGCCTATTGTTTCGCTTGTAGC..................... 24 1 20 0.05 1 1 0 0 0
........................................................TGTTGAGGAAGTTGTCGATCGCTTCA.......................................................................................................... 26 0 20 0.05 1 0 1 0 0
..................................................TGCATCTGTTGAGGAAGTTGTAGATC................................................................................................................ 26 1 20 0.05 1 0 1 0 0
..................................................TGCATCTGTTGAGGAAGGTGTCGATCGC.............................................................................................................. 28 1 20 0.05 1 0 1 0 0
.................................................................................................................................................TGCCTATTGTTTCGCTTTTAGTGGTT................. 26 1 20 0.05 1 0 0 1 0
..................................................TTAATCTGTTGAGGAAGTTGTCGATC................................................................................................................ 26 2 20 0.05 1 0 1 0 0
..................................................TGAATCTGTTGAGGAAGTTGTCGAT................................................................................................................. 25 1 20 0.05 1 0 1 0 0

Anti-sense strand reads

TTGAAGACACCGAACATCCACAGTAGCAAACAACGTAATTATATCGACTAACGTAGACAACTCCTTCAACAGCTAGCGAAGTAACAACGGCTCCGGTTTCGGAGGTTCACTATCTGCAGGAAGACAACTACGACTACGGAATAACACGGATAACAAAGCGAACATCACCAATAACAACAAAGGAAATT
************************************..(((((..((.....(((((......(((((.((((.(((((((..........(((((....))))).))))))).))))..)))))...)))))....))..))))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
...................................................................................................CGGAGGTTCACTATCTGCAGGA................................................................... 22 0 20 1.20 24 10 11 0 3
.................................CGTAATTATATCGACTAACGTAGACAA................................................................................................................................ 27 0 13 1.15 15 4 11 0 0
..........................................................................................................TCACTATCTGCAGGAAGACAACTACGA....................................................... 27 0 2 0.50 1 1 0 0 0
.................................................................................................TTCGGAGGTTCACTATCTGCAGGA................................................................... 24 0 20 0.50 10 8 2 0 0
................................................................................................TTTCGGAGGTTCACTATCTGCAGGA................................................................... 25 0 20 0.45 9 7 1 1 0
...............................................................................................GTTTCGGAGGTTCACTATCTGCAGGA................................................................... 26 0 20 0.35 7 7 0 0 0
..................................................................................................TCGGAGGTTCACTATCTGCAGGA................................................................... 23 0 20 0.30 6 0 5 0 1
..............................................................................................GGTTTCGGAGGTTCACTATCTGCAGGA................................................................... 27 0 20 0.25 5 5 0 0 0
.....................................ATTATATCGACTAACGTAGACAA................................................................................................................................ 23 0 13 0.23 3 2 1 0 0
....................................AATTATATCGACTAACGTAGACAA................................................................................................................................ 24 0 13 0.23 3 3 0 0 0
....................................................................................................GGAGGTTCACTATCTGCAGGA................................................................... 21 0 20 0.20 4 2 0 2 0
.......................................................................................CGGCTCCGGTTTCGGAGGTTCACTATCT......................................................................... 28 0 10 0.20 2 0 2 0 0
.........................................................................................................................AGACAACTACGACTACGGAATAACACGG....................................... 28 0 11 0.18 2 2 0 0 0
..................................................................................................................................CGACTACGGAATAACACGGATAACA................................. 25 0 11 0.18 2 0 2 0 0
.................................CGTAATTATATCGACTAACGTAGACGA................................................................................................................................ 27 1 13 0.15 2 0 2 0 0
............................................CGACTAACGTAGACAACTCCTTCAA....................................................................................................................... 25 0 20 0.15 3 2 1 0 0
............................................................................................................................................ATAACACGGATAACAAAGCGAACAT....................... 25 0 20 0.15 3 1 1 1 0
..................................................................................................CCGGAGGTTCACTATCTGCAGGA................................................................... 23 1 20 0.15 3 0 3 0 0
............................................................................................CCGGTTTCGGAGGTTCACTAT........................................................................... 21 0 20 0.15 3 0 3 0 0
.......................................................................................................GGTTCACTATCTGCAGGAAGACAA............................................................. 24 0 20 0.15 3 1 2 0 0
........................................................................................................GTTCACTATCTGCAGGAAGACAA............................................................. 23 0 20 0.10 2 2 0 0 0
..........................................................................................................TCACTATCTGCAGGAAGACAA............................................................. 21 0 20 0.10 2 1 1 0 0
........................................................................................AGCTCCGGTTTCGGAGGTTCACT............................................................................. 23 1 10 0.10 1 1 0 0 0
........ACCGAACATCCACAGTAGCAAACAA........................................................................................................................................................... 25 0 10 0.10 1 1 0 0 0
..................................................................................................TCGGAGGTTCACTATCTGCAGG.................................................................... 22 0 20 0.10 2 2 0 0 0
........................................................................................GGCTCCGGTTTCGGAGGTTCACT............................................................................. 23 0 10 0.10 1 1 0 0 0
.................................................................................................................................ACGACTACGGAATAACACGGA...................................... 21 0 11 0.09 1 1 0 0 0
..............................................................................................................................ACTACGACTACGGAATAACACGG....................................... 23 0 11 0.09 1 1 0 0 0
.....GACACCGAACATCCACAGTAGCAAA.............................................................................................................................................................. 25 0 11 0.09 1 1 0 0 0
............................................................................................................................CAACTACGACTACGGAATAACACGG....................................... 25 0 11 0.09 1 0 1 0 0
...............................................................................................................................CTACGACTACGGAATAACACGG....................................... 22 0 11 0.09 1 0 1 0 0
......ACACCGAACATCCACAGTAGC................................................................................................................................................................. 21 0 11 0.09 1 1 0 0 0
...............................................................................................................................CTACGACTACGGAATAACACGGA...................................... 23 0 11 0.09 1 1 0 0 0
..................................................................................................................................CGACTACGGAATAACACGGATA.................................... 22 0 11 0.09 1 1 0 0 0
............................................................................................................................CAACTACGACTACGGAATAACA.......................................... 22 0 12 0.08 1 0 1 0 0
........................................ATATCGACTAACGTAGACAACTCCTT.......................................................................................................................... 26 0 12 0.08 1 1 0 0 0
.................................CGTAATTATATCGACTCACGTAGACAA................................................................................................................................ 27 1 13 0.08 1 0 1 0 0
......................................ATATATCGACTAACGTAGACAA................................................................................................................................ 22 1 13 0.08 1 1 0 0 0
.................................CGGAATTATATCGACTAACGTAGACAA................................................................................................................................ 27 1 13 0.08 1 0 1 0 0
....................................AATTATATGGACTAACGTAGACAA................................................................................................................................ 24 1 13 0.08 1 1 0 0 0
.......................................................................................................................GAAGACAACTACGACTACGGAATAAC........................................... 26 0 13 0.08 1 0 1 0 0
...................................TAATTATATCGACTAACGTAGACAA................................................................................................................................ 25 0 13 0.08 1 1 0 0 0
.......................................TATATCGACTAACGTAGACAA................................................................................................................................ 21 0 13 0.08 1 1 0 0 0
.................................CGTAATTATATCGACTAACGTAGACAAC............................................................................................................................... 28 0 13 0.08 1 0 1 0 0
..................................GTAATTATATCGACTAACGTAGACAA................................................................................................................................ 26 0 13 0.08 1 1 0 0 0
.................................CGTAATTATATCGACTAACGTAGA................................................................................................................................... 24 0 13 0.08 1 0 1 0 0
.................................CGTAATTATATCGACTAACGTATA................................................................................................................................... 24 1 13 0.08 1 0 1 0 0
......................................TTATATCGACTAACGTAGACAA................................................................................................................................ 22 0 13 0.08 1 1 0 0 0
.............ACATCCACAGTAGCAAACAACGTAATTA................................................................................................................................................... 28 0 14 0.07 1 1 0 0 0
..........................................................................................................................GACAACTACGACTACGGAATA............................................. 21 0 14 0.07 1 1 0 0 0
.........CCGAACATCCACAGTAGCAAACAACCTAG...................................................................................................................................................... 29 2 14 0.07 1 0 1 0 0
..........CGAACATCCACAGTAGCAAACAACGT........................................................................................................................................................ 26 0 14 0.07 1 1 0 0 0
.......................................................................GCTAGCGAAGTAACAACGGCTCCGGTTT......................................................................................... 28 0 14 0.07 1 0 0 1 0
.........................................................................................................................AGACAACTACGACTACGGA................................................ 19 0 14 0.07 1 1 0 0 0
.................................................................AAAACAGCTAGCGAAGTAACAACGG.................................................................................................. 25 2 16 0.06 1 1 0 0 0
.................................................................TCAACAGCTAGCGAAGTAACAAC.................................................................................................... 23 0 16 0.06 1 0 1 0 0
................................................................TTCAACAGCTAGCGAAGTAAC....................................................................................................... 21 0 16 0.06 1 1 0 0 0
...............................................................................................................................................................GAACATCACCAATAACAACAAAGGAA... 26 0 16 0.06 1 1 0 0 0
..................................................................................................TCGGAGGTTCACTATCTGCAG..................................................................... 21 0 20 0.05 1 1 0 0 0
.............................................................................................CGGTTTCGGAGGTTCACTATCTGCA...................................................................... 25 0 20 0.05 1 0 1 0 0
............................................CGACTAACGTAGACAACTCCTTCA........................................................................................................................ 24 0 20 0.05 1 1 0 0 0
....................................................................................................................................ACTACGGAATAACACGGATAACAA................................ 24 0 20 0.05 1 0 1 0 0
...........................................................................................................CACTATCTGCAGGAAGACAACTA.......................................................... 23 0 20 0.05 1 1 0 0 0
.......................................................................................................................................ACGGAATAACACGGATAACAAAGCGA........................... 26 0 20 0.05 1 1 0 0 0
..................................................................................................CCGGAGGTTCACTATCTGCACGA................................................................... 23 2 20 0.05 1 0 1 0 0
.................................................................................................................................................................ACATCACCAATAACAACAAAGGAA... 24 0 20 0.05 1 1 0 0 0
......................................................................................................AGGTTCACTATCTGCAGGAAGACAA............................................................. 25 0 20 0.05 1 0 0 1 0
........................................................................................................GTTCACTATCTGCAGGAAGACAACTA.......................................................... 26 0 20 0.05 1 0 0 1 0
........................................................................................................................................CGGAATAACACGGATAACAAAGCGAA.......................... 26 0 20 0.05 1 1 0 0 0
...............................................................................................GTTTCGGAGGTTCACTAT........................................................................... 18 0 20 0.05 1 1 0 0 0
.....................................................................................................................................CTACGGAATAACACGGATAACAAAGCG............................ 27 0 20 0.05 1 0 1 0 0
.............................................................................................................CTATCTGCAGGAAGACAACTA.......................................................... 21 0 20 0.05 1 0 1 0 0
...............................................................................................GTTTCGGAGGTTCAATATCTGCAGGA................................................................... 26 1 20 0.05 1 1 0 0 0
.................................................................................................................................................ACGGATAACAAAGCGAACAT....................... 20 0 20 0.05 1 1 0 0 0
..............................................................................................GGTTTCGGAGGTTCACTATCTGCAGG.................................................................... 26 0 20 0.05 1 1 0 0 0
..................CACAATAGCAAACAACGTAAT..................................................................................................................................................... 21 1 20 0.05 1 0 1 0 0
................................................................................................................................................CACGGATAACAAAGCGAACATCACCAAT................ 28 0 20 0.05 1 0 1 0 0
....................................................GTAGACAACTCCTTCAACAGCTAGC............................................................................................................... 25 0 20 0.05 1 1 0 0 0
....................................................................................................GGAGGTTCACTATCTGCAGTA................................................................... 21 1 20 0.05 1 0 1 0 0
......................................................................................................AGGTTCACTATCTGCAGGAAGACAACTA.......................................................... 28 0 20 0.05 1 1 0 0 0
..............................................................................................GGTTTCGGAGGTTCACTATCTGCA...................................................................... 24 0 20 0.05 1 1 0 0 0
.........................................................................................................TTCACTATCTGCAGGAAGACAA............................................................. 22 0 20 0.05 1 1 0 0 0
........................................................................................................................................CGGAATAACACGGATAACAAAGCGAACAT....................... 29 0 20 0.05 1 1 0 0 0
...................................................................................................CGGAGGTTCACTATCTGCAGG.................................................................... 21 0 20 0.05 1 1 0 0 0
............................................................................................................................................ATAACACGGATAACAAAGCGAACGT....................... 25 1 20 0.05 1 0 1 0 0
............................................CGACTAACGTAGACAACTCCTTCAAC...................................................................................................................... 26 0 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_2641:1737-1924 - dmo_224 AACTTCTGTGGCTTG-TAGGTGTCATCGTTTGTTGCATTAATATAGCTGATTGC--ATCTGTTGAGGAAGTTGTCGATCGCTTCATTGTTGCCGAGGCCAAAGCCTCCAAGTGATA--------------------------------------GACGTCCTTCTGTTGATGCTGATGCCTTATTGTGCCTATTGTTTCGCT---------------------------------------------------TGTAGTGGTTATTG---------TTGTTTCCTTTAA
droVir3 scaffold_12875:4863355-4863451 - TTGC---------CCCCTAGCCCATCCCCTTTGA--------GTA--------------------------------------------------------------------GTTGGCGTCGCT--------AGTTGA--------A-------------------------------ATTATCATGAGCATTGGCTCGCT---------------------------------------------------TGTTGTAGTTGTTT---------TTGTTGTTGTCAA
droGri2 scaffold_14853:1388869-1388974 + TGTT---------GTTGTAGTTGTAGTTGTTGTT--------GTAGC---------------------------------------------------------------------------------------GAATAGCGGTAGCAGTTT-----------TTGTTGTTGTTGGTTGGTTGTTGTTGTTGTTGGTTGGTT---------------------------------------------------G------GTTGTTG---------TTGTTGTTGTT--
droWil2 scf2_1100000004515:4072418-4072583 + TTGT---------TGTTG------------------------------------------------------------------------------------------------TTGTTGTTGTTGTTGTTGTTGTTGT--------TGTTGTAATTGTTGTTGTAATTGTTGTTGTT-GTTGTTGCAAATGTTGTTGTTGTTGTAATTGTTGTTGTTGTTGTTGTAATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG---------TTGTTGTTGTTGT
dp5 3:16806658-16806808 - GGTT---------TG-TTAGTGGGATCTGCTGCA--------GCAGCTGATTGATCGTTTGATGCGGTTGTGATTGATGGATTGATGGCAGTAGCAATTACAGCATTTACGTGAA------------------TGGCGT--------T-------------------------------ATTGTTA---TTACTGCTGTTGT---------------------------------------------------TGTTGTTGTTGTTG---------TTGTTATTATTAA
droAna3 scaffold_13335:1799091-1799092 - AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395005:11189-11234 - TTGA---------ACTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTCTTT---------------------------------------------------TATAATTATTATTA---------TTTTTTTCTTTAA
droEle1 scf7180000491023:1065854-1065921 + TCAG--------------------------------------------------------------------------------------------------------------TGGGTGTTGGT--------TGTTGT--------G-------------------------------CTTGTTGTG------------CT---------------------------------------------------TGTTGTGGTTGTTGTTGTTGTTGTTGT-GTGATTTG
droRho1 scf7180000774982:16026-16104 + GTAA--------------------------------------------------------------------------------------------------------------TA--------------------------------------ACTGTTATTTTGGTTATTATTATT-TCTGTTATAACCATTGTTTTAAT---------------------------------------------------TATATCCGTTATTG---------TTATTTCTGTT-A
droTak1 scf7180000415383:457977-458049 + CTGC---------TGCTG------------------------------------------------------------------------------------------------CTGGTGATGCT--------GGTTGTGGG-------------------------------------GCTG------CTGCTGCTGCAGT---------------------------------------------------TGTTGATGCTGCAG---------CTGCTGCGATTGG
dm3 chrX:4248328-4248396 + TCTC---------TCTGTTCTGCA-------------------------------------------------------------------------------------------------------------TGCTGT--------TCCTT----------------------------TTC------TTCTACTTGTTCT---------------------------------------------------TGTTCTCGTTATTG---------TTGTTGCTGTTGT
droYak3 X:6882102-6882254 - TGTA---------GCTAATGTTGC-------------------------------------------------------------------------------------------------------------TGATGT--------AGCTTATGTTGCTGATGTAGCTAATGTTGCT-GATGTTGCTAATGTTGCTGATGTTGCTAATGTTGCTGATGTAGCTAATGTTGCTGATGTAGCTAATGTTGCTGATGTAGCTAATGTTG---------CTGATGTTGCTAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AACTTCTGTGGCTTG-TAGGTGTCATCGTTTGTTGCATTAATATAGCTGATTGC--ATCTGTTGAGGAAGTTGTCGATCGCTTCATTGTTGCCGAGGCCAAAGCCTCCAAGTGATA--------------------------------------GACGTCCTTCTGTTGATGCTGATGCCTTATTGTGCCTATTGTTTCGCT---------------------------------------------------TGTAGTGGTTATTG---------TTGTTTCCTTTAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCTGATG...............................................................................................................26323.67715770025
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCTGAT................................................................................................................25320.67625400062
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCTGATGCC.............................................................................................................28217.503517000171
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCTGATGC..............................................................................................................27311.67351980044
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCTG..................................................................................................................23310.67322350004
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCTGA.................................................................................................................24310.00302700021
...................................................TGC--ATCTGTTGAGGAAGTTGTCGATCG.................................................................................................................................................................................................................27203.65737300000
....................................................................................................................................................................................TTATTGTGCCTATTGTTTCGCT---------------------------------------------------TG..................................24203.55716300080
...................................................TGC--ATCTGTTGAGGAAGTTGTCG.....................................................................................................................................................................................................................23202.95595400005
...................................................TGC--ATCTGTTGAGGAAGTTGTCGATC..................................................................................................................................................................................................................26202.20440000440
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGC....................................................................................................................2132.006120030
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCT...................................................................................................................2231.334300010
....................................................................................................................................................................................TTATTGTGCCTATTGTTTCGCT---------------------------------------------------TGTAG...............................27201.20242400000
.................................................................................................................................................................TTCTGTTGATGCTGATGCCTTATTG.......................................................................................................25131.15151500000
....................................................................................................................................................................................TTATTGTGCCTATTGTTTCGCT---------------------------------------------------TGT.................................25201.10221720030
...................................................................................................................A--------------------------------------GACGTCCTTCTGTTGATGCTG..................................................................................................................2231.003300000
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCTGATGCCT............................................................................................................2921.002100010
...................................................................................................................A--------------------------------------GACGTCCTTCTGTTGATGCTGATG...............................................................................................................2531.003300000
..............................................................................................................................................................TCCTTCTGTTGATGCTGATGCCTTA..........................................................................................................25130.85111100000
...................................................................................................................A--------------------------------------GACGTCCTTCTGTTGATGCTGA.................................................................................................................2330.672200000
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCTGATA...............................................................................................................2630.672100010
...................................................................................................................A--------------------------------------GACGTCCTTCTGTTGATGCTGATGC..............................................................................................................2630.672200000
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCTGATC...............................................................................................................2630.672200000
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCTGAC................................................................................................................2530.672000020
..............................................................................................................................................................TCCTTCTGTTGATGCTGATGCCTTATTG.......................................................................................................28120.678800000
...................................................................................................................A--------------------------------------GACGTCCTTCTGTTGATGCTGATGCC.............................................................................................................2720.501100000
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCTGATT...............................................................................................................2640.502100010
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCTGATGCCA............................................................................................................2920.501000010
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCTGATGCCC............................................................................................................2920.501000010
..................................................................................TCATTGTTGCCGAGGCCAAAGCCTCCAA...................................................................................................................................................................................28120.506300030
.................................................................................TTCATTGTTGCCGAGGCCAAAGCCTCCAA...................................................................................................................................................................................29120.506300030
..........................................................................................................................................................................................TGCCTATTGTTTCGCT---------------------------------------------------TGTAGTGGT...........................25200.459440010
......................TCATCGTTTGTTGCATTAATATAGCTG................................................................................................................................................................................................................................................27120.425500000
...................................................TGC--ATCTGTTGAGGAAGTTGTCGAC...................................................................................................................................................................................................................25200.408000080
....................................................GC--ATCTGTTGAGGAAGTTGTCGATC..................................................................................................................................................................................................................25200.408800000
.................................................................................TTCATTGTTGCCGAGGCCAAAGCC........................................................................................................................................................................................24130.385200030
.....................................................................................................................................................................................TATTGTGCCTATTGTTTCGCT---------------------------------------------------TG..................................23200.357700000
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCTGC.................................................................................................................2430.331000010
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCTGATGCT.............................................................................................................2830.331100000
...................................................................................................................A--------------------------------------GACGTCCTTCTGTTGATGCTGAT................................................................................................................2430.331100000
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATG.....................................................................................................................2030.331100000
......................TCATCGTTTGTTGCATTAATATAGCTGA...............................................................................................................................................................................................................................................28120.334400000
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCTGT.................................................................................................................2430.331100000
..................................................................................................................TA--------------------------------------GACGTCCTTCTGTTGATGCTGATGA..............................................................................................................2730.331010000
..............................................................................................................................................................TCCTTCTGTTGATGCTGATGCCTTATT........................................................................................................27130.314200020
..................................................................................TCATTGTTGCCGAGGCCAAAGCCT.......................................................................................................................................................................................24130.314000040
..............................................................................................................................................................TCCTTCTGTTGATGCTGATGCCTT...........................................................................................................24130.314400000
..............................................................................................................................................................TCCTTCTGTTGATGCTGATGCCTTAT.........................................................................................................26130.314300010
.....................................................................................................................................................................................TATTGTGCCTATTGTTTCGCT---------------------------------------------------TGTAG...............................26200.306600000
...........................................................................................................................................................................................GCCTATTGTTTCGCT---------------------------------------------------TGTAGTGGTTA.........................26200.306200013
..........................................................................................................................................................................................TGCCTATTGTTTCGCT---------------------------------------------------TGTAGTGGTTA.........................27200.306510000
.......................................................................................................................................................................................TTGTGCCTATTGTTTCGCT---------------------------------------------------TGTAG...............................24200.306600000
......................................................................................................................................................................TTGATGCTGATGCCTTATTGTGCC...................................................................................................24110.273300000
.........................TCGTTTGTTGCATTAATATAGCTGAT..............................................................................................................................................................................................................................................26120.253300000
.......................................................................................................................................................................................TTGTGCCTATTGTTTCGCT---------------------------------------------------TGTAGTGG............................27200.255500000
.......................................................................................................................................................................................TTGTGCCTATTGTTTCGCT---------------------------------------------------TGTAGTGGT...........................28200.255400010
..........................................................................................................................................................................................TGCCTATTGTTTCGCT---------------------------------------------------TGTAGTGG............................24200.204400000
..............................................................TGAGGAAGTTGTCGATCGCTTCATTGT........................................................................................................................................................................................................27150.203200010
......................................................................................................................................................................TTGATGCTGATGCCTTATTGTGCCTA.................................................................................................26110.182200000
..................................................................................................................................................................TCTGTTGATGCTGATGCCTTATTGTG.....................................................................................................26110.182200000
.................................................................................................................................................................................................TGTTTCGCT---------------------------------------------------TGTAGTGGTTATTG---------T............24170.183100020
......................TCATCGTTTGTTGCATTAATATAGCTGAT..............................................................................................................................................................................................................................................29120.172200000
.................................................................................................................................................................TTCTGTTGATGCTGATGCCTTATTGT......................................................................................................26120.172200000
.................................................................................TTCATTGTTGCCGAGGCCAAAGCCTCCA....................................................................................................................................................................................28130.152200000
..................................................................................................................................................................TCTGTTGATGCTGATGCCTTATTG.......................................................................................................24130.152200000
......................TCATCGTTTGTTGCATTAATATAGC..................................................................................................................................................................................................................................................25130.152100010
.................................................................................TTCATTGTTGCCGAGGCCAAAGCCTCC.....................................................................................................................................................................................27130.152000020
..................................................................................TCATTGTTGCCGAGGCCAAAGCC........................................................................................................................................................................................23130.152000020
.................................TGCATTAATATAGCTGATTGC--ATCTG....................................................................................................................................................................................................................................26130.152200000
....................................................................................................................................................................................TTATTGTGCCTATTGTTTCGCT---------------------------------------------------....................................22200.153200010
...........................................................................................................................................................................................GCCTATTGTTTCGCT---------------------------------------------------TGTAGTGGTT..........................25200.153100011
....................................................................................................................................................................................TTATTGTGCCTATTGTTTCGCT---------------------------------------------------TGTA................................26200.153200010
...........................................................TGTTGAGGAAGTTGTCGATCGCTTC.............................................................................................................................................................................................................25200.153110001
.................................................................................................................................................................TTCTGTTGATGCTGATGCC.............................................................................................................19140.142100010
.................................................................................TTCATTGTTGCCGAGGCCAAAGC.........................................................................................................................................................................................23140.142000020
....................................................................................................................................................................................................TTCGCT---------------------------------------------------TGTAGTGGTTATTG---------TTGTTTC......27160.132200000
....................................................................................................................................................................................................TTCGCT---------------------------------------------------TGTAGTGGTTATTG---------TTGT.........24170.122100010
....................................................................................................................................................................................................TTCGCT---------------------------------------------------TGTAGTGGTTATTG---------TTGTT........25170.122200000
..............................................................................................................................................................................................TATTGTTTCGCT---------------------------------------------------TGTAGTGGTTATTG---------.............26170.122200000
..........................................................................................................................................................................................TGCCTATTGTTTCGCT---------------------------------------------------TGTAGTGGC...........................25200.102000020
.........................................................................................TGCCGAGGCCAAAGCCTCCAAGT.................................................................................................................................................................................23100.101100000
..................................................TTGC--ATCTGTTGAGGAAGTTGTC......................................................................................................................................................................................................................23200.102000020
.......................................................................................................................................................................................TTGTGCCTATTGTTTCGCT---------------------------------------------------TGTAGTG.............................26200.102200000
........................................................................................................................................................................................TGTGCCTATTGTTTCGCT---------------------------------------------------TGTAGTGG............................26200.102200000
.........................................................TCTGTTGAGGAAGTTGTCGATCGCTT..............................................................................................................................................................................................................26200.102000020
..........................................................................................................................................................................................TGCCTATTGTTTCGCT---------------------------------------------------TGTAGTGGTT..........................26200.102100010
...................................................TGC--ATCTGTTGAGGAAGTTGTCGATCGA................................................................................................................................................................................................................28200.102200000
.................................................................................................................................................................................GCCTTATTGTGCCTATTGTTTCGCT---------------------------------------------------TG..................................27200.102200000
......................................................................................TGTTGCCGAGGCCAAAGCCTCCAAG..................................................................................................................................................................................25110.091100000
...........................................................................................................................................................................GCTGATGCCTTATTGTGCCTATTG..............................................................................................24110.091100000
.................................................................................................................................................................TTCTGTTGATGCTGATGCCTTATTGTGA....................................................................................................28110.091100000
....................................................................................................................................................................TGTTGATGCTGATGCCTTATTGTGCC...................................................................................................26110.091000010
...TTCTGTGGCTTG-TAGGTGTCATCG.....................................................................................................................................................................................................................................................................24110.091100000
AACTTCTGTGGCTTG-TAGGTGT..........................................................................................................................................................................................................................................................................22110.091100000
....................................................................................................................................................................TGTTGATGCTGATGCCTTATTGTGCCTA.................................................................................................28110.091100000
........................................................................................................................................................................GATGCTGATGCCTTATTGTGCCTAT................................................................................................25110.091100000
...........................................................................................................................................................................GCTGATGCCTTATTGTGCCTATT...............................................................................................23110.091100000
..........................................................................................................................................................................TGCTGATGCCTTATTGTGCCTATTG..............................................................................................25110.091100000
..........................CGTTTGTTGCATTAATATAGCTGATC.............................................................................................................................................................................................................................................26120.081100000
..........................CGTTTGTTGCATTAATATAGCTGA...............................................................................................................................................................................................................................................24120.081100000
.........................TCGTTTGTTGCATTAATATAGCTGATTGC--.........................................................................................................................................................................................................................................29120.081000010
........................................ATATAGCTGATTGC--ATCTGTTGAGGAAG...........................................................................................................................................................................................................................28120.081100000
.........................................TATAGCTGATTGC--ATCTGTTGAGGAAGT..........................................................................................................................................................................................................................28120.081000010
........................ATCGTTTGTTGCATTAATATAGCTG................................................................................................................................................................................................................................................25120.081100000
.........................................TATAGCTGATTGC--ATCTGTTGAGGAAG...........................................................................................................................................................................................................................27120.081100000
...........................GTTTGTTGCATTAATATAGCTGATTG............................................................................................................................................................................................................................................26120.081100000
........................ATCGTTTGTTGCATTAATATAGCTGAT..............................................................................................................................................................................................................................................27120.081100000
.........................TCGTTTGTTGCATTAATATAGCTGA...............................................................................................................................................................................................................................................25120.081100000
..................................................................................................................................................................TCTGTTGATGCTGATGCCTTATTGT......................................................................................................25120.081100000
.........................TCGTTTGTTGCATTAATATAGCTGATCC............................................................................................................................................................................................................................................28120.081100000
........................................ATATAGCTGATTGC--ATCTGTTGAG...............................................................................................................................................................................................................................24130.081100000
.....................GTCATCGTTTGTTGCATTAATATAGC..................................................................................................................................................................................................................................................26130.081000010
..................................................................................TCATTGTTGCCGAGGCCAAAGCCTCC.....................................................................................................................................................................................26130.081100000
....................................................................................ATTGTTGCCGAGGCCAAAGCC........................................................................................................................................................................................21130.081000010
..........................CGTTTGTTGCATTAATATAGC..................................................................................................................................................................................................................................................21130.081100000
...............................................................................................................................................................CCTTCTGTTGATGCTGATGCCTTA..........................................................................................................24130.081100000
...............................................................................................................................................................CCTTCTGTTGATGCTGATGCC.............................................................................................................21130.081100000
...............................................................................................................................................................CCTTCTGTTGATGCTGATGCCTT...........................................................................................................23130.081100000
..............................................................................CGCTTCATTGTTGCCGAGGCCAAAGCC........................................................................................................................................................................................27130.081000010
......................TCATCGTTTGTTGCATTAATATAGCT.................................................................................................................................................................................................................................................26130.081100000
...........................................TAGCTGATTGC--ATCTGTTGAGG..............................................................................................................................................................................................................................22130.081100000
.....................................................................................TTGTTGCCGAGGCCAAAGCCTCCAA...................................................................................................................................................................................25130.081100000
.......................CATCGTTTGTTGCATTAATATAGCT.................................................................................................................................................................................................................................................25130.081100000
.................................TGCATTAATATAGCTGATTGC--ATCTGT...................................................................................................................................................................................................................................27130.081100000
.ACTTCTGTGGCTTG-TAGG.............................................................................................................................................................................................................................................................................18130.081010000
................................................................................CTTCATTGTTGCCGAGGCCAAAGCCT.......................................................................................................................................................................................26130.081000010
...............................................................................................................................................................CCTTCTGTTGATGCTGATGCCTTATC........................................................................................................26130.081100000
.................................TGCATTAATATAGCTGATTGC--ATCT.....................................................................................................................................................................................................................................25130.081100000
..................................................................................TCATTGTTGCCGAGGCCAAAGCCTC......................................................................................................................................................................................25130.081100000
.................................................................................TTCATTGTTGCCGAGGCCAAAGCCC.......................................................................................................................................................................................25130.081000010
..............................................................................................................................................................TCCTTCTGTTGATGCTGATGCCT............................................................................................................23130.081100000
.................................................................................TTCATTGTTGCCGAGGCCAAAGCCT.......................................................................................................................................................................................25130.081000010
..............................................................................................................................................................TCCTTCTGTTGATGCTGATG...............................................................................................................20140.071100000
...................................................................................................................................................................CTGTTGATGCTGATGCCTTAT.........................................................................................................21140.071100000
.....................................................................................TTGTTGCCGAGGCCAAAGCCT.......................................................................................................................................................................................21140.071000010
.................................................................................................................................................................TTCTGTTGATGCTGATGCCT............................................................................................................20140.071100000
...............................................................................................................................................................CCTTCTGTTGATGCTGATGC..............................................................................................................20140.071100000
................................................................AGGAAGTTGTCGATCGCTTCATTG.........................................................................................................................................................................................................24150.071100000
..............................................................TGAGGAAGTTGTCGATCGCTTCATTG.........................................................................................................................................................................................................26150.071000010
...................................................................AAGTTGTCGATCGCTTCATTGTTGC.....................................................................................................................................................................................................25150.071100000
......................................................................TTGTCGATCGCTTCATTGTTGCCGAGGCC..............................................................................................................................................................................................29150.071100000
.....................................................................................................................................................................................................TCGCT---------------------------------------------------TGTAGTGGTTATTG---------TTGTTTCC.....27160.061000010
....................................................................................................................................................................................................TTCGCT---------------------------------------------------TGTAGTGGTTATTG---------TTGTTTCC.....28160.061100000
................................................................................................................................................................................................TTGTTTCGCT---------------------------------------------------TGTAGTGGTTATTG---------.............24170.061100000
................................................................................................................................................................................................TTGTTTCGCT---------------------------------------------------TGTAGTGGTTATTG---------TTG..........27170.061100000
....................................................................................................................................................................................................TTCGCT---------------------------------------------------TGTAGTGGTTATTG---------TTGTTT.......26170.061100000
....................................................................................................................................................................................................TTCGCT---------------------------------------------------TGTAGTGGTTATTG---------TTGC.........24170.061000010
...........................................................................................................................................................................................GCCTATTGTTTCGCT---------------------------------------------------TGTAGTGGTTATT.......................28170.061100000
.....................................................................................................................................................................................................TCGCT---------------------------------------------------TGTAGTGGTTATTG---------TTGTT........24170.061000010
............................................................................................................................................................................................CCTATTGTTTCGCT---------------------------------------------------TGTAGTGGTTA.........................25200.051000001
.............................................GCTGATTGC--ATCTGTTGAGGAAGTTG........................................................................................................................................................................................................................26200.051100000
.............................................................................................................................................................................................CTATTGTTTCGCT---------------------------------------------------TGTAGTGGC...........................22200.051000010
........................................................ATCTGTTGAGGAAGTTGTCGAC...................................................................................................................................................................................................................22200.051000010
....................................................................................................................................................................................TTATTGTGCCTATTGTTTCGCT---------------------------------------------------TGC.................................25200.051000010
..................................................TTGC--ATCTGTTGAGGAAGTTGTCGAT...................................................................................................................................................................................................................26200.051100000
..............................................CTGATTGC--ATCTGTTGAGGAAGTT.........................................................................................................................................................................................................................24200.051000001
........................................................................................................................................................................................TGTGCCTATTGTTTCGCT---------------------------------------------------TGTA................................22200.051100000
..........................................................CTGTTGAGGAAGTTGTCGATCGCT...............................................................................................................................................................................................................24200.051000010
.............................................................................................................................................................................................CTATTGTTTCGCT---------------------------------------------------TGTAGTGGTTAT........................25200.051100000
....................................................................................................................................................................................TTATTGTGCCTATTGTTTCGCT---------------------------------------------------TGTC................................26200.051000010
...................................................TGC--ATCTGTTGAGGAAGTTGTCGATCGCC...............................................................................................................................................................................................................29200.051000010
....................................................GC--ATCTGTTGAGGAAGTTGTCGAT...................................................................................................................................................................................................................24200.051000010
................................................................................................................................................................................TGCCTTATTGTGCCTATTGTTTCGC........................................................................................25200.051100000
...................................................................................................................................................................................CTTATTGTGCCTATTGTTTCGCT---------------------------------------------------TGT.................................26200.051100000
..................................................TTGC--ATCTGTTGAGGAAGTTGTCGATC..................................................................................................................................................................................................................27200.051100000
.......................................................................................................................................................................................TTGTGCCTATTGTTTCGCT---------------------------------------------------TGT.................................22200.051100000
.........................................................................................................TCCAAGTGATA--------------------------------------GACGTCCTTCTGT..........................................................................................................................24200.051100000
..........................................................................................................................................................................................TGCCTATTGTTTCGCT---------------------------------------------------TGTAGTGGTTAC........................28200.051000010
.....................................................C--ATCTGTTGAGGAAGTTGTCGATCGCC...............................................................................................................................................................................................................27200.051000010
..................................................TTGC--ATCTGTTGAGGAAGTTGTCG.....................................................................................................................................................................................................................24200.051100000
.................................................................GGAAGTTGTCGATCGCTTCATT..........................................................................................................................................................................................................22200.051100000
...........................................................................................................................................................................................GCCTATTGTTTCGCT---------------------------------------------------TGTAGTGG............................23200.051000010
...........................................................................................................CAAGTGATA--------------------------------------GACGTCCTTCTGTTGAT......................................................................................................................26200.051000010
...................................................TGC--ATCTGTTGAGGAAGTTGTCGC....................................................................................................................................................................................................................24200.051100000
..............................................................................................................................................................................................TATTGTTTCGCT---------------------------------------------------TGTAGTGGTTA.........................23200.051100000
.................................................................................................CCAAAGCCTCCAAGTGATA--------------------------------------GACGTCC................................................................................................................................26200.051000001
..........................................................................................................................................................................................TGCCTATTGTTTCGCT---------------------------------------------------TGTAG...............................21200.051000010
................................................................................................................................................................................TGCCTTATTGTGCCTATTGTTTCGCT---------------------------------------------------T...................................27200.051000010
....................................................................................................................................................................................TTATTGTGCCTATTGTTTCGCT---------------------------------------------------TGTAGC..............................28200.051100000
...................................................TGC--ATCTGTTGAGGAAGTTGTCGATCGC................................................................................................................................................................................................................28200.051000001
...............................................TGATTGC--ATCTGTTGAGGAAGTT.........................................................................................................................................................................................................................23200.051000010
.........................................................TCTGTTGAGGAAGTTGTCGATCGCTTCA............................................................................................................................................................................................................28200.051000010
.......................................................................................................................................................................................TTGTGCCTATTGTTTCGCT---------------------------------------------------TGTAGTGGC...........................28200.051000010
.........................................................................................................TCCAAGTGATA--------------------------------------GACGTCCTTCTGTTGA.......................................................................................................................27200.051100000
...............................................................................................................................................................................................................................................................TAGTGGTTATTG---------TTGTTTCCT....21200.051000010
........................................................................................................................................................................................TGTGCCTATTGTTTCGCT---------------------------------------------------TGTAGTGGT...........................27200.051100000
........................................................................................................................................................................................TGTGCCTATTGTTTCGCT---------------------------------------------------TGTAGC..............................24200.051100000
...........................................................TGTTGAGGAAGTTGTCGATCGCTTCA............................................................................................................................................................................................................26200.051000010
droVir3
TTGC---------CCCCTAGCCCATCCCCTTTGA--------GTA--------------------------------------------------------------------GTTGGCGTCGCT--------AGTTGA--------A-------------------------------ATTATCATGAGCATTGGCTCGCT---------------------------------------------------TGTTGTAGTTGTTT---------TTGTTGTTGTCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
TGTT---------GTTGTAGTTGTAGTTGTTGTT--------GTAGC---------------------------------------------------------------------------------------GAATAGCGGTAGCAGTTT-----------TTGTTGTTGTTGGTTGGTTGTTGTTGTTGTTGGTTGGTT---------------------------------------------------G------GTTGTTG---------TTGTTGTTGTT--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TTGT---------TGTTG------------------------------------------------------------------------------------------------TTGTTGTTGTTGTTGTTGTTGTTGT--------TGTTGTAATTGTTGTTGTAATTGTTGTTGTT-GTTGTTGCAAATGTTGTTGTTGTTGTAATTGTTGTTGTTGTTGTTGTAATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG---------TTGTTGTTGTTGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................TTGTTGTTGTTGTTGTTGTTG...............................21200.20400040
....................................................................................................................................................................TAATTGTTGTTGTT-GTTGTTGC......................................................................................................22130.08100010
..........................................................................................................................................T--------TGTTGTAATTGTTGTTGTAA..........................................................................................................................21140.07101000
....................................................................................................................................................................................................................................................TGTTGTTGTTGTTGTTGTTGTTG---------T............24200.05101000
..............................................................................................................................................................TTGTTGTAATTGTTGTTGTT-G.............................................................................................................21200.05101000
.............................................................................................................................GTTGTTGTTGTTGT--------TGTTGTAA......................................................................................................................................22200.05100010
.....................................................................................................................................................................AATTGTTGTTGTT-GTTGTTGC......................................................................................................21200.05100001
...........................................................................................................................................................................................................................TTGTTGTAATTGTTGTTGTTG.................................................21200.05101000
...................................................................................................................................................................................................................TGTTGTTGTTGTTGTAATTGT.........................................................21200.05110000
.........................................................................................................................................................................................................TTGTAATTGTTGTTGTTGA.....................................................................19200.05101000
.................................................................................................................................................................................................................GTTGTTGTTGTTGTTGTAATTGTT........................................................24200.05100100
..............................................................................................................................................................................................................................TTGTAATTGTTGTTGTTGA................................................19200.05101000
.TGT---------TGTTG------------------------------------------------------------------------------------------------TTGTTGTTGTT....................................................................................................................................................................19200.05101000
................................................................................................................................GTTGTTGTTGT--------TGTTGTAATTGTT.................................................................................................................................24200.05100100
......................................................................................................................................................................................................TTGTTGTAATTGTTGTTGTTG......................................................................21200.05101000
dp5
GGTT---------TG-TTAGTGGGATCTGCTGCA--------GCAGCTGATTGATCGTTTGATGCGGTTGTGATTGATGGATTGATGGCAGTAGCAATTACAGCATTTACGTGAA------------------TGGCGT--------T-------------------------------ATTGTTA---TTACTGCTGTTGT---------------------------------------------------TGTTGTTGTTGTTG---------TTGTTATTATTAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................T---------------------------------------------------TGTTGTTGTTGTTG---------TTGTT........20200.0510100000000
droAna3
AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTGA---------ACTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTCTTT---------------------------------------------------TATAATTATTATTA---------TTTTTTTCTTTAASizeHit CountTotal NormTotal
No Reads
droEle1
TCAG--------------------------------------------------------------------------------------------------------------TGGGTGTTGGT--------TGTTGT--------G-------------------------------CTTGTTGTG------------CT---------------------------------------------------TGTTGTGGTTGTTGTTGTTGTTGTTGT-GTGATTTGSizeHit CountTotal NormTotal
No Reads
droRho1
GTAA--------------------------------------------------------------------------------------------------------------TA--------------------------------------ACTGTTATTTTGGTTATTATTATT-TCTGTTATAACCATTGTTTTAAT---------------------------------------------------TATATCCGTTATTG---------TTATTTCTGTT-ASizeHit CountTotal NormTotal
No Reads
droTak1
CTGC---------TGCTG------------------------------------------------------------------------------------------------CTGGTGATGCT--------GGTTGTGGG-------------------------------------GCTG------CTGCTGCTGCAGT---------------------------------------------------TGTTGATGCTGCAG---------CTGCTGCGATTGGSizeHit CountTotal NormTotal
No Reads
dm3
TCTC---------TCTGTTCTGCA-------------------------------------------------------------------------------------------------------------TGCTGT--------TCCTT----------------------------TTC------TTCTACTTGTTCT---------------------------------------------------TGTTCTCGTTATTG---------TTGTTGCTGTTGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................TCTCGTTATTG---------TTGTTGCTGTTGT2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TCT---------------------------------------------------TGTTCTCGTTATTG---------TTGTT........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TTATTG---------TTGTTGCTGTTG.1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droYak3
TGTA---------GCTAATGTTGC-------------------------------------------------------------------------------------------------------------TGATGT--------AGCTTATGTTGCTGATGTAGCTAATGTTGCT-GATGTTGCTAATGTTGCTGATGTTGCTAATGTTGCTGATGTAGCTAATGTTGCTGATGTAGCTAATGTTGCTGATGTAGCTAATGTTG---------CTGATGTTGCTAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................GATGTTGCTAATGTTGCTGATGT.......................................................................................2330.33100010000000
.....................................................................................................................................................................................................GATGTTGCTAATGTTGCTGATGT.....................................................................2330.33100010000000
......................................................................................................................................................................................................................................GCTGATGTAGCTAATGTTGCTGATG..................................2560.17100000010000
.............................................................................................................................................................GCTGATGTAGCTAATGTTGCT-GATG..........................................................................................................2560.17100000010000
........................................................................................................................................................................................................................................................GCTGATGTAGCTAATGTTG---------CTGATG.......2560.17100000010000
....................................................................................................................................................................................................................GCTGATGTAGCTAATGTTGCTGATG....................................................2560.17100000010000
.................................................................................................................................................................................................................GTTGCTGATGTAGCTAATGTTGCTGAT.....................................................2760.17100000010000
..........................................................................................................................................................GTTGCTGATGTAGCTAATGTTGCT-GAT...........................................................................................................2760.17100000010000
.....................................................................................................................................................................................................................................................GTTGCTGATGTAGCTAATGTTG---------CTGAT........2760.17100000010000
...................................................................................................................................................................................................................................GTTGCTGATGTAGCTAATGTTGCTGAT...................................2760.17100000010000

Generated: 05/15/2015 at 02:55 PM