ID:

dmo_2235

 Coordinate:

scaffold_6541:2311404-2311554 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.7 -14.6 -14.6

Flybase annnotation

exon [dmoj_GLEANR_14331:6]; CDS [Dmoj\GI14159-cds]; intron [Dmoj\GI14159-in]

No Repeatable elements found

mature
  1. scaffold_257:1029-1053 -
  2. scaffold_5102:179-203 -
  3. scaffold_6195:3110-3134 -
  4. scaffold_6262:10654-10678 -
  5. scaffold_6328:3414391-3414415 -
  6. scaffold_6485:3888-3912 -
  7. scaffold_6496:24884587-24884611 -
  8. scaffold_6496:26554598-26554622 -
  9. scaffold_6498:2510774-2510798 -
  10. scaffold_6498:2518866-2518890 -
  11. scaffold_6498:2588554-2588578 -
  12. scaffold_6500:31413745-31413769 -
  13. scaffold_6500:31681081-31681105 -
  14. scaffold_6501:535976-536000 -
  15. scaffold_6540:151336-151360 -
  16. scaffold_6540:24366687-24366711 -
  17. scaffold_6541:313900-313924 -
  18. scaffold_6541:2304143-2304167 -
  19. scaffold_6541:2307619-2307643 -
  20. dmo_2235  scaffold_6541:2311506-2311530 -
  21. scaffold_2877:827-851 -
  22. scaffold_2884:605-629 -
  23. scaffold_4209:3449-3473 -
  24. scaffold_4374:2181-2205 -
  25. scaffold_5458:866-890 -
  26. scaffold_5747:833-857 -
  27. scaffold_6117:1652-1676 -
  28. scaffold_6195:283-307 -
  29. scaffold_6356:45075-45099 -
  30. scaffold_6385:94160-94184 -
  31. scaffold_6385:97794-97818 -
  32. scaffold_6385:98043-98067 -
  33. scaffold_6496:26525999-26526023 -
  34. scaffold_6498:3147127-3147151 -
  35. scaffold_6500:27184815-27184839 -
  36. scaffold_6500:30844084-30844108 -
  37. scaffold_6500:30846579-30846603 -
  38. scaffold_6500:30884867-30884891 -
  39. scaffold_6500:30974355-30974379 -
  40. scaffold_6680:24193057-24193081 -
  41. scaffold_279:2984-3008 +
  42. scaffold_1780:9761-9785 +
  43. scaffold_2968:3628-3652 +
  44. scaffold_4102:417-441 +
  45. scaffold_4206:1012-1036 +
  46. scaffold_4217:505-529 +
  47. scaffold_4251:867-891 +
  48. scaffold_4482:908-932 +
  49. scaffold_4712:623-647 +
  50. scaffold_6328:2298397-2298421 +
  51. scaffold_6332:41825-41849 +
  52. scaffold_6356:5885-5909 +
  53. scaffold_6478:33831-33855 +
  54. scaffold_6495:81232-81256 +
  55. scaffold_6498:3284613-3284637 +
  56. scaffold_6498:3287054-3287078 +
  57. scaffold_6500:9703445-9703469 +
  58. scaffold_6541:196038-196062 +
  59. scaffold_6541:2097589-2097613 +
  60. scaffold_6541:2233465-2233489 +
star
  1. scaffold_2968:6458-6482 +
  2. scaffold_6500:9703497-9703521 +
  3. dmo_2235  scaffold_6541:2311454-2311478 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATAATATATTTTATATAATTTGGAACAATAGGTCTAAGCTCTCTCTAGTCCGAATATGAACTGAACTAAATCTGTTCAACTGGTTAGGTTCTCCCCTTGAATGTCTGACTGGACTCTCCAGCCTCCTTAGATTGTCGAAAGTCTTAACTTTTATATATAATTAACAATTTTTTTTGTTTCTTTTTCAAACTTTTTTTTAAGGCTGCGTTAAGATGTTGCAATTTTGCAAAATCTTTATAAATGATGCCACC
**************************************************************************.......(((((((..((....((((..(((((((((((...))))).....))))))..)))).)).)))))))..**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body
..........................................................................TTCAACTGGTTAGGTTCTCCCCTTG........................................................................................................................................................ 25 0 20 11.05 221 221 0 0
............................TAGGTCTAAGCTCTCTCTAGTCCGAAT.................................................................................................................................................................................................... 27 0 2 3.50 7 5 2 0
............................TAGGTCTAAGCTCTCTCTAGTCC........................................................................................................................................................................................................ 23 0 2 2.50 5 1 4 0
............................TAGGTCTAAGCTCTCTCTAGTCCG....................................................................................................................................................................................................... 24 0 2 2.00 4 4 0 0
..........................................................................TTCAACTGGTTAGGTTCTCCCCT.......................................................................................................................................................... 23 0 20 1.55 31 14 17 0
............................TAGGTCTCAGCTCTCTCTAGTCC........................................................................................................................................................................................................ 23 1 2 0.50 1 0 1 0
......................GAACAATAGGTCTAAGCTCTCTCTAGT.......................................................................................................................................................................................................... 27 0 2 0.50 1 1 0 0
............................TAGGTCTAAGCTCTCTCTAGTCCGAATA................................................................................................................................................................................................... 28 0 2 0.50 1 0 1 0
............................TAGGTCTAAGCTCTCTCTAGTCCGAATT................................................................................................................................................................................................... 28 1 2 0.50 1 1 0 0
............................TAGGTCTAAGCTCTCTCTAGTCCGA...................................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0
............................................................................CAACTGGTTAGGTTCTCCCCTTGAATGTC.................................................................................................................................................. 29 0 20 0.45 9 9 0 0
............................................................................CAACTGGTTAGGTTCTCCCCTTGAA...................................................................................................................................................... 25 0 20 0.40 8 0 8 0
..............................................................................................................................TTAGATTGTCGAAAGTCTTAACTTT.................................................................................................... 25 0 3 0.33 1 1 0 0
..............................................................................................................................TTAGATTGTCGAAAGTCTTAACTCTTAT................................................................................................. 28 1 3 0.33 1 1 0 0
.........................................................GAACTGAACTAAATGTGG................................................................................................................................................................................ 18 2 20 0.30 6 6 0 0
..............ATAATTTGGAACAATAGGTCTAAGC.................................................................................................................................................................................................................... 25 0 4 0.25 1 0 1 0
........................................................TGAACTGAACTAAATCTGTTCAACTGG........................................................................................................................................................................ 27 0 9 0.22 2 2 0 0
...................................................................................................................................................................................................................................AAAACCTTTATAAATGGTGC.... 20 2 6 0.17 1 0 1 0
............................................................................CAACTGGTTAGGTTCTCCCCTTG........................................................................................................................................................ 23 0 20 0.15 3 0 3 0
........................................................TGAACTGAACTAAATCTGTTCAACTGGT....................................................................................................................................................................... 28 0 8 0.13 1 1 0 0
...................................................................................................................................TTGTCGAAAGTCTTAACTCTTTTAG............................................................................................... 25 3 9 0.11 1 1 0 0
..............ATAATTTGGAACAATAGGTCT........................................................................................................................................................................................................................ 21 0 20 0.10 2 0 0 2
.........................................................................GTTCAACTGGTTAGGTTCTCCCCTT......................................................................................................................................................... 25 0 20 0.10 2 2 0 0
..................................................................................................................TCTCCAGCCTCCTTAGATTGTCGAAAGTC............................................................................................................ 29 0 20 0.10 2 2 0 0
......................................................TATGAACTGAACTAAATCTG................................................................................................................................................................................. 20 0 12 0.08 1 1 0 0
.......................................................ATGAACTGAACTAAATCTG................................................................................................................................................................................. 19 0 13 0.08 1 1 0 0
.......................................................ATGAACTGAACTAAATCTGTT............................................................................................................................................................................... 21 0 13 0.08 1 1 0 0
............................................................................CAACTGGTTAGGTTCTCCCC........................................................................................................................................................... 20 0 20 0.05 1 1 0 0
.......................................................................................................TCTTACTGGACTCTCCAGCCTCCTTAG......................................................................................................................... 27 1 20 0.05 1 0 1 0
............................................................................CGACTGGTTAGGTTCTCCCCTTGAATGT................................................................................................................................................... 28 1 20 0.05 1 0 1 0
..........................................................................TTAAACTGGTTAGGTTCTCCCCTTGAAT..................................................................................................................................................... 28 1 20 0.05 1 0 1 0
......................................................................................................GTCTGACTGGACTCTCCAGCCTCCTTT.......................................................................................................................... 27 1 20 0.05 1 1 0 0
.......................................................AGGAACTGAACTAAATGTG................................................................................................................................................................................. 19 2 20 0.05 1 1 0 0
...........................................................................................TCCCCTTGAATGTCTGACTGGACTCTCC.................................................................................................................................... 28 0 20 0.05 1 1 0 0
..................................................................................................GAATGTCTGACTGGACTCTCCAGTCT............................................................................................................................... 26 1 20 0.05 1 0 1 0
....................................................................................................................TCCAGCCTCCTTAGATTGTCGAAAGTCT........................................................................................................... 28 0 20 0.05 1 1 0 0
.......................................................................................................TCTGACTGGACTCTCCAGCCTCCTT........................................................................................................................... 25 0 20 0.05 1 0 1 0
........................................................GGAACTGAACTAAATGTG................................................................................................................................................................................. 18 2 20 0.05 1 1 0 0
..............................................................................................................................TTAGATTGTCGAAAGTCTTAACTT..................................................................................................... 24 0 20 0.05 1 1 0 0
.......................................................................................................TCTGACTGGACTCTCCAGCCTCCTTAGAC....................................................................................................................... 29 1 20 0.05 1 0 1 0
..................................................................................................................................................................................................GTCTAAGGCTGCGTTCAG....................................... 18 3 20 0.05 1 0 0 1
........................................................................TGTTCAACTGGTTAGGTTCTCCCCT.......................................................................................................................................................... 25 0 20 0.05 1 1 0 0
........................................................................TGTTCAACTGGTTAGGTTCTCCCCTTGA....................................................................................................................................................... 28 0 20 0.05 1 1 0 0
............................................................................CAACTGGTTAGATTCTCCCCTTGA....................................................................................................................................................... 24 1 20 0.05 1 1 0 0

Anti-sense strand reads

TATTATATAAAATATATTAAACCTTGTTATCCAGATTCGAGAGAGATCAGGCTTATACTTGACTTGATTTAGACAAGTTGACCAATCCAAGAGGGGAACTTACAGACTGACCTGAGAGGTCGGAGGAATCTAACAGCTTTCAGAATTGAAAATATATATTAATTGTTAAAAAAAACAAAGAAAAAGTTTGAAAAAAAATTCCGACGCAATTCTACAACGTTAAAACGTTTTAGAAATATTTACTACGGTGG
****************************************************************************************************.......(((((((..((....((((..(((((((((((...))))).....))))))..)))).)).)))))))..************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V049
head
 V041
embryo
 V056
head
...........................................................TGACTTGATTTAGACAAGTTGACCAAT..................................................................................................................................................................... 27 0 20 6.15 123 75 47 0 0 1 0
...................................................................................................................................................................................................AGATTACGACGCCATTCTAC.................................... 20 3 5 5.40 27 0 21 5 1 0 0
............................................................GACTTGATTTAGACAAGTTGACCAAT..................................................................................................................................................................... 26 0 20 3.05 61 51 10 0 0 0 0
.............ATATTAAACCTTGTTATCCAGATTC..................................................................................................................................................................................................................... 25 0 4 0.50 2 2 0 0 0 0 0
..........................................................TTGACTTGATTTAGACAAGTTGACCA....................................................................................................................................................................... 26 0 20 0.35 7 7 0 0 0 0 0
...................................................................................................................GAGGTCGGAGGAATCTAACAG................................................................................................................... 21 0 20 0.30 6 6 0 0 0 0 0
...........................................................................................AGGGGAACTTACAGACTGACCT.......................................................................................................................................... 22 0 20 0.30 6 6 0 0 0 0 0
............................................................................................GGGGAACTTACAGACTGACCT.......................................................................................................................................... 21 0 20 0.30 6 0 6 0 0 0 0
...................................................................................................................GAGGTCGGAGGAATCTAACAGCTT................................................................................................................ 24 0 20 0.25 5 5 0 0 0 0 0
............AAAATTAAACCTTGTTATCCAGATTC..................................................................................................................................................................................................................... 26 2 4 0.25 1 1 0 0 0 0 0
...............ATTAAACCTTGTTATCCAGATTC..................................................................................................................................................................................................................... 23 0 4 0.25 1 1 0 0 0 0 0
.........................................................CTTGACTTGATTTAGACAAGTTGACCA....................................................................................................................................................................... 27 0 8 0.25 2 2 0 0 0 0 0
..................................................................................................................AGAGGTCGGAGGAATCTAACAGCT................................................................................................................. 24 0 20 0.20 4 4 0 0 0 0 0
......................................................................................CCAAGAGGGGAACTTACAGACTGACC........................................................................................................................................... 26 0 20 0.15 3 3 0 0 0 0 0
...................................................................................................................................................................................................................................TTGTCGAAATTTTTACTACGGT.. 22 3 7 0.14 1 0 0 0 1 0 0
.........................................................CTTGACTTGATTTAGACAAGTTGACCAAT..................................................................................................................................................................... 29 0 8 0.13 1 0 1 0 0 0 0
..............................CCAGATTCGAGAGGGTTC........................................................................................................................................................................................................... 18 2 8 0.13 1 0 1 0 0 0 0
...................................................................................................................................................................................................................................TATTCGAAATTTTTACTACGGT.. 22 3 8 0.13 1 0 0 0 0 0 1
.........................................AGAGATCAGGCTTATACTTGACT........................................................................................................................................................................................... 23 0 9 0.11 1 1 0 0 0 0 0
...........................................................................................AGGGGAACTTACAGACTGAC............................................................................................................................................ 20 0 20 0.10 2 0 0 2 0 0 0
...........................................................TGACTTGATTTAGACAAGTTGACCAGT..................................................................................................................................................................... 27 1 20 0.10 2 0 2 0 0 0 0
........................................................................................AAGAGGGGAACTTACAGACTGACCT.......................................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0 0
..................................................................................................................AGAGGTCGGAGGAATCTAACAG................................................................................................................... 22 0 20 0.10 2 0 0 2 0 0 0
.................................................................................................................GAGAGGTCGGAGGAATCTAACAGCTTT............................................................................................................... 27 0 20 0.10 2 2 0 0 0 0 0
....................................................................TTAGACAAGTTGACCAATCCAAGAG.............................................................................................................................................................. 25 0 20 0.10 2 2 0 0 0 0 0
.................................................................................................................GAGAGGTCGGAGGAATCTAACAG................................................................................................................... 23 0 20 0.10 2 0 0 2 0 0 0
.............................................................................................GGGAACTTACAGACTGACCT.......................................................................................................................................... 20 0 20 0.10 2 2 0 0 0 0 0
................................................................................................................TGAGAGGTCGGAGGAATCTATCAG................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0
.....................................................................TAGACAAGTTGACCAATCCAAGAGGG............................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0
......................................GAGAGAGATCAGGCTTATA.................................................................................................................................................................................................. 19 0 20 0.05 1 0 0 0 1 0 0
.....................................................................CAGACAAGTTGACCAATCCAAGAGG............................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0 0
...............................................................................................................CTGAGAGGTCGGAGGAATC......................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0
.............................................................................................................ACCTGAGAGGTCGGAGGAATCTAAC..................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
...........................................................TGACTTGATTTAGACAAGTTGATCAAT..................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................CCTGAGAGGTCGGAGGAATCTAACAG................................................................................................................... 26 0 20 0.05 1 0 0 0 0 1 0
................................................................................................................TGAGAGGTCGGAGGAATCTAACGG................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0
........................................................................................................CACTGACCTGAGAGGTCGGAGGAATCTA....................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0
...........................................................TGACTTGATTTAGACAAATTGACCA....................................................................................................................................................................... 25 1 20 0.05 1 0 0 1 0 0 0
..............................................................................................................CCTGAGAGGTCGGAGGAATCTAACAGCT................................................................................................................. 28 0 20 0.05 1 0 1 0 0 0 0
...........ATATATTAAACCTTGTTA.............................................................................................................................................................................................................................. 18 0 20 0.05 1 1 0 0 0 0 0
....................................................................................................................AGGTCGGAGGAATCTAACAGC.................................................................................................................. 21 0 20 0.05 1 0 0 1 0 0 0
.........................................................................................AGAGGGGAACTTACAGACTGACC........................................................................................................................................... 23 0 20 0.05 1 0 0 1 0 0 0
............TATATTAAACCTTGTTATCCAGATT...................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0
...........................................................TGACTTGATTTAGACAAGTTGACCA....................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 1 0
.........................................................................................................................GGAGGAATCTAACAGCTTTCAGAATTG....................................................................................................... 27 0 20 0.05 1 0 0 1 0 0 0
....................................................................................................................AGGTCGGAGGAATCTAACAGCTT................................................................................................................ 23 0 20 0.05 1 0 0 0 0 1 0
.......................................................................................................................TCGGAGGAATCTAACAGCT................................................................................................................. 19 0 20 0.05 1 0 1 0 0 0 0
......................................................................................CCAAGAGGGGAACTTACAGACTGA............................................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6541:2311354-2311604 - dmo_2235 ATAATATATTTTATATAATTTGGAACAA-TAGGTCTAAGCTCTCTCTAGTCCGAATATGAACTGAACTAAATCTGTTCAACTGGTTA-----GGT--TCTCCCCTTGAATGTCTGACTGGACTCTCCAGCCTCCTTAGATTGTCGAAAGTCTTAACTTTTATATATAATTAACAATTTTTTTTGTTTCTTT--------------------------------------------TTC--------------------------A-----AACTT-------------------------------------------------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------------------A-----AGGCTGCGTTAAGATGTTGCAATTTTGC-A--A-----A--AT-CTTTATAAATGATGCCACC
droVir3 scaffold_12936:269031-269170 + CCGAAATAGTTTTCCCCCAC-------------------------------------------------------------CGGGTC-----GGTGATTTCCCACTGCTTTTCTGT-----------------------------------------------------------------TTGTCCTATC----T--------------ACTTAACACTCTTTATCTAACTTAAATT--------------------------T-----GGTTA-------------------------------------------------------------------------------------------------------------------------------------GT-------------------------------------------------------------------------------------------------TTATTAACAATCTTCTAAGTTTCTTTTTTTCTATT--------------------------------------TTT----------TTTAA-------
droGri2 scaffold_14853:205625-205811 - TTTAATA--------CAATTTGCAATAC-TAATATTGATCCTTTGATCCTT---------------------------------TGAACGT-----------GCTGAACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTCAGAGAT------TTGCATATCTCTTCCCTTATTTTTCTGCCTCACGCTTTA----------------------------------------------------------------------------------------------------------------------------TCTTTCTCTCTTTCTTTCCGCTTCTTAGCTTATTTTTTATTAACAATTTTCTATCTGTTTTG---TCTCTT------------------------------TTT-----CAG----------GTTTT-------
droWil2 scf2_1100000004921:2066991-2067174 + ATCATGCAGTTGATTCAATTTATATCTT-TTCGTTAAAGCC-----------------------------------------CTTTAAATT-----------CTTTGACTGGATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAATCT----------------------------------------------------------------------------------------------------AAGCAGCATAAGGTCCATTAATTGGCAATATTTATCA------TTCAC-CAACTCTTTAGAGCAGACCATCTCGTTTTCTA---CTTAAC------ATTATTAACAATTGTC------------TTCTTTTT--------------------------------------TTT----------TTCAA-------
dp5 Unknown_group_12:6298-6382 - TTTTGTGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTGCGATTTTATTTGTTTTGTT--------------------------------------------TTC--------------------------T-----TGTTTC------------TCA---------------------------------------------------ATTTA----------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------GTTATAGTCTTA-----TTGTTAAT------T--T-TTTT----AAACG-------
droPer2 scaffold_9:2198891-2198972 - CTAGTTCCCTCAAAAT-------------TG-----------------------------------------------------AAAAT--C---------------------------------------GG---------------ATTAAAGCT----TATATATTTAACAATTTTTATTGCATTTTA--------------------------------------------TTC--------------------------T-----TATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT----------CATAA-------
droAna3 scaffold_13248:3729292-3729454 + ATAAAAAATTTTATATAATATGGAACAT-T---------------------------------------------------------------------------------------------------------------------------------------------GGAGTTTTT-------------------------------------------------------------------------------------------------TTTTCGTCTGATTAAA--------------TTT----------------------------------------------------------------------------------------------------AATTATCACTAATCCTAATTATCTTGAATACGAGTCG--ATTGTTGACTGAACTATCCCGATCCGACATTCTG------------------------------------------------------------GTCTGAACTAAGATAAAACAATTTTC-----C-----CCG----------TTTTT-------
droBip1 scf7180000394845:15578-15702 - CCTCGTAAGG------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTGAACTTTTTCTTTC-TTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTATTATTTTTTTTTTCTTTAATTGTAAAATTTTTCTTTAATTTTA-------------------------CAATTGT----TAAA---------T----------------------------------------------TGTT-TA-ATTCTTCATTATAATA--------------------------------------ATA----------AATAA-------
droKik1 scf7180000302570:27925-28052 - CTTTTAAGTTTAAAAAA--------------------------------------------------------------------------A--------------------------------------------------------GTTTTAACTTTTTTATTGGATTAAGTAT-------------------------------------------------------------------TTTTTTATATATTAAGCACGATTGTTTTT------------------ACGTATCAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAATAAATTTGTATAAATTTTG---GAACGT------------------------------ATA-----AAA----------TTACC-------
droFic1 scf7180000453829:8278-8384 - AATTTCTAATTT---------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTAACAAGTTACACTGAATTATT--------------------------------------------ACT--------------------------G-----AATTA-------------------------------------------------------------------------------------------------------------------------------------TTTTGG-------------------------------------------------------------------------------------------------G------------------------A-----AGGCTGCGCCAAGGTGCTCCAGTTCTGT-A--A-----C--AT-TTTTATTACGGACGCCACA
droEle1 scf7180000487466:77361-77470 + CGATGGTCAC-----------------------------------------------------------------------------------------------------------------------------------------------AACTTTTTTACCTCATTAAGATATGTTTTTGTTTTATA--------------------------------------------TCA--------------------------G-----AAGTT-------------------------------------------------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------------------T-----AAATATAGTCAAAGTACCGCAATACTGTGAACA-----CGGT-TTTT----ACAAA-------
droRho1 scf7180000779726:14653-14740 + TAAGATTAATAA----------------C--------------------------------------------------------------C--------------------------------------------------------------------------AATTAAAAGTTTTTTTTGTTTGTCTTTAAA--------------AATAAATTTTC----------------------------------------------------------------------TGGCTCTAGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATTTGTTTGT---------------------------------------------------------ATA----------AATGA-------
droBia1 scf7180000302468:37859-37971 - AACTTGTTCTCCCGGTCC----------------------------------------------------------------AGATGGACT-----------TCCTGGATGTGTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAGTTTTGTGTGTCA------------------------ACAGATTCTTAAACTTTTTAATTTATCTATTTAATCAACATTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC----------CATCT-------
droTak1 scf7180000415256:34840-34938 + TGTCTTTAATCG----------------T--------------------------------------------------------------A--------------------------------------------------------------------------GGTTTTCTAGATTTTTTCATGTTTTTTCTAAATATTTTTTTTAAAATAACTTTTT-------------------------------------------------TT------------------ATATTGCAATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-------------------------------------------------------------A-----T--AA-CTT----TATAA-------
droEug1 scf7180000408659:1183-1305 - TTTTTATATTTTTAATATTT----------------------------------------------------------------TTAATAT-----------TTTTAAAT------------------------------------------------------------------------------ATT--------------------------------------------TTTAAATATTTTTTAAATATTTTTTTAAATATTTTTT------------------AAATATT--------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTA----------------------------------------------------A-ATATTTTTTAA-ATATTTTTTAAATATT--------------------------------------TTT----------TAAAT-------
dm3 chr2R:1420238-1420376 - TTAGCTTCCTCG----------------C---------------------------------------------------------------------------TTGCGTTTTCTGCTAGCAGTGCAAACCTGTTTTTATTGTTGGTAGTA--------------------GTAATTTTT-------------------------------------------------------------------------------------------------ATTTCGCTACCACAAT--------------T----------------------------------------------------------------------------------------------------TCTTTTGGCTCTAT-------------------------TACCTGT----TGTA---------T-------------------------------------GTTGCG----------------------------GACTCCGTTGACG------------------------TTT----------TGCAA-------
droSim2 node_52566:12555-12668 - CCAGCCTCCATGATAAGTTTAACATTAT-CGATAGTAG--------------------------------------------A-----------------------------------------------------------------GTTCTACTTCTTGTATGTACTGATTAGCTGTTTTTGTTTTTTT--------------------------------------------TTT--------------------------T-----TTTTTT------------TTAGA--------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------T-------AATAA---T-TTTG----CCGAA-------
droSec2 scaffold_6681:1311-1381 - TTAACTTTCACTTAGTGA----------T--------------------------------------------------------------A-------------------------------------------------------------------------------GTTTTTTTTTTTTTTTTTTT--------------------------------------------TTT--------------------------------TTTTT-------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------TTCATTA-----AGGCCCTAAT-----------------------------------------AAGGT-------
droYak3 2L:17266450-17266528 + TTTATATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------AGAATACAGTTTTTTCTGTTATTTC--------------------------------------------TAC--------------------------C-----TGTTTTTTTTTTAAAACGTCAAA--------------T----------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------T-------TAAAA---C-CCCT----AATAA-------
droEre2 scaffold_4770:8377864-8377959 + TAATTTTGAAAT----------------A--------------------------------------------------------------T--------------------------------------------------------------------------GATTTTTAATTTTATTTATTGCTTTTTCTCCATAACATTTTTATCGGAGACTGAG-------------------------------------------------TT------------------AGATTTTGGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------GTA-----TGG----------TTTTT-------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ATAATATATTTTATATAATTTGGAACAA-TAGGTCTAAGCTCTCTCTAGTCCGAATATGAACTGAACTAAATCTGTTCAACTGGTTA-----GGT--TCTCCCCTTGAATGTCTGACTGGACTCTCCAGCCTCCTTAGATTGTCGAAAGTCTTAACTTTTATATATAATTAACAATTTTTTTTGTTTCTTT--------------------------------------------TTC--------------------------A-----AACTT-------------------------------------------------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------------------A-----AGGCTGCGTTAAGATGTTGCAATTTTGC-A--A-----A--AT-CTTTATAAATGATGCCACCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................TTCAACTGGTTA-----GGT--TCTCCCCTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................252011.0522122100000
.............................TAGGTCTAAGCTCTCTCTAGTCCGAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2723.507500020
.............................TAGGTCTAAGCTCTCTCTAGTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2322.505100040
.............................TAGGTCTAAGCTCTCTCTAGTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2422.004400000
...........................................................................TTCAACTGGTTA-----GGT--TCTCCCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23201.553114000170
......................GAACAA-TAGGTCTAAGCTCTCTCTAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.501100000
.............................TAGGTCTAAGCTCTCTCTAGTCCGAATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.501000010
.............................TAGGTCTAAGCTCTCTCTAGTCCGAATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.501100000
.............................TAGGTCTAAGCTCTCTCTAGTCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.501100000
.............................................................................CAACTGGTTA-----GGT--TCTCCCCTTGAATGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.459900000
.............................................................................CAACTGGTTA-----GGT--TCTCCCCTTGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.408000080
......................................................................................................................................TTAGATTGTCGAAAGTCTTAACTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.331100000
..............ATAATTTGGAACAA-TAGGTCTAAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.251000010
.........................................................TGAACTGAACTAAATCTGTTCAACTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2790.222200000
.............................................................................CAACTGGTTA-----GGT--TCTCCCCTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.153000030
.........................................................TGAACTGAACTAAATCTGTTCAACTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2880.131100000
..............ATAATTTGGAACAA-TAGGTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000002
..........................................................................GTTCAACTGGTTA-----GGT--TCTCCCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
..........................................................................................................................TCTCCAGCCTCCTTAGATTGTCGAAAGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.102200000
.......................................................TATGAACTGAACTAAATCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20120.081100000
........................................................ATGAACTGAACTAAATCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.081100000
........................................................ATGAACTGAACTAAATCTGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.081100000
.............................................................................CAACTGGTTA-----GGT--TCTCCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
..............................................................................................................GTCTGACTGGACTCTCCAGCCTCCTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
...................................................................................................TCCCCTTGAATGTCTGACTGGACTCTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
............................................................................................................................TCCAGCCTCCTTAGATTGTCGAAAGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
...............................................................................................................TCTGACTGGACTCTCCAGCCTCCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000010
......................................................................................................................................TTAGATTGTCGAAAGTCTTAACTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
...............................................................................................................TCTGACTGGACTCTCCAGCCTCCTTAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051000010
.........................................................................TGTTCAACTGGTTA-----GGT--TCTCCCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
.........................................................................TGTTCAACTGGTTA-----GGT--TCTCCCCTTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
droVir3
CCGAAATAGTTTTCCCCCAC-------------------------------------------------------------CGGGTC-----GGTGATTTCCCACTGCTTTTCTGT-----------------------------------------------------------------TTGTCCTATC----T--------------ACTTAACACTCTTTATCTAACTTAAATT--------------------------T-----GGTTA-------------------------------------------------------------------------------------------------------------------------------------GT-------------------------------------------------------------------------------------------------TTATTAACAATCTTCTAAGTTTCTTTTTTTCTATT--------------------------------------TTT----------TTTAA-------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................GT-----------------------------------------------------------------TTGTCCTATC----T--------------ACTTAACACTCTT..............................................................................................................................................................................................................................................................................................................................................................................................2660.332000000000000000000000000002000000000000000000000000000000000000
..................................................................................................................GT-----------------------------------------------------------------TTGTCCTATC----T--------------ACTTAACACT.................................................................................................................................................................................................................................................................................................................................................................................................2370.292002000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................CTAACTTAAATT--------------------------T-----GGTTA-------------------------------------------------------------------------------------------------------------------------------------GT-------------------------------------------------------------------------------------------------TTATTAAC..........................................................................................2870.292000000000000000000000000000000000000000000000000000000000000002
...................................................................................................................T-----------------------------------------------------------------TTGTCCTATC----T--------------ACTTAACACTCT...............................................................................................................................................................................................................................................................................................................................................................................................24200.255005000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTAAGTTTCTTTTTTTCTA.................................................................2160.171000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCTTCTAAGTTTCTTTTTTTCTAT................................................................2760.171000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................CTAACTTAAATT--------------------------T-----GGTTA-------------------------------------------------------------------------------------------------------------------------------------GT-------------------------------------------------------------------------------------------------TTATTAACATC.......................................................................................3170.141000000000000000000000000000000000000000000000000000000000000001
........................................................................................................................................................................................................................................TAAATT--------------------------T-----GGTTA-------------------------------------------------------------------------------------------------------------------------------------GT-------------------------------------------------------------------------------------------------TTATTAA...........................................................................................2170.141000000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................................................................................................................TCTTTATCTAACTTAAATT--------------------------T-----GGTTA-------------------------------------------------------------------------------------------------------------------------------------GT-------------------------------------------------------------------------------------------------T.................................................................................................2870.141000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAATCTTCTAAGTTTCTTTTTTTC...................................................................2780.131001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAATCTTCTAAGTTTCTTTTTTT....................................................................2680.131001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCTTCTAAGTTTCTTTT.......................................................................2090.111000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................TCTTTATCTAACTTAAATT--------------------------T-----GGT............................................................................................................................................................................................................................................................................................................................................23110.091001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................ACTCTTTATCTAACTTAAATT--------------------------T-----GGT............................................................................................................................................................................................................................................................................................................................................25110.091000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................CACTCTTTATCTAACTTAAATT--------------------------T-----GGT............................................................................................................................................................................................................................................................................................................................................26110.091000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................ACACTCTTTATCTAACTTAAATT--------------------------T-----GGT............................................................................................................................................................................................................................................................................................................................................27110.091000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................C----T--------------ACTTAACACTCTTTATCTAACTTAAAA................................................................................................................................................................................................................................................................................................................................................................................29120.081000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................TTAACACTCTTTATCTAACTTAAATT--------------------------.....................................................................................................................................................................................................................................................................................................................................................26130.081000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................TTGTCCTATC----T--------------ACTTAACAC..................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000100000000000000000000000000000000000000
.........TTTTCCCCCAC-------------------------------------------------------------CGGGTC-----GGTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................C----T--------------ACTTAACACTCTTTATCTAACT.....................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................TATC----T--------------ACTTAACACTCTTTA............................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTGTCCTATC----T--------------ACTTAACACTCT...............................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000001000000000000000000000000000000000000
droGri2
TTTAATA--------CAATTTGCAATAC-TAATATTGATCCTTTGATCCTT---------------------------------TGAACGT-----------GCTGAACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTCAGAGAT------TTGCATATCTCTTCCCTTATTTTTCTGCCTCACGCTTTA----------------------------------------------------------------------------------------------------------------------------TCTTTCTCTCTTTCTTTCCGCTTCTTAGCTTATTTTTTATTAACAATTTTCTATCTGTTTTG---TCTCTT------------------------------TTT-----CAG----------GTTTT-------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATCATGCAGTTGATTCAATTTATATCTT-TTCGTTAAAGCC-----------------------------------------CTTTAAATT-----------CTTTGACTGGATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAATCT----------------------------------------------------------------------------------------------------AAGCAGCATAAGGTCCATTAATTGGCAATATTTATCA------TTCAC-CAACTCTTTAGAGCAGACCATCTCGTTTTCTA---CTTAAC------ATTATTAACAATTGTC------------TTCTTTTT--------------------------------------TTT----------TTCAA-------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
TTTTGTGTAT------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTGCGATTTTATTTGTTTTGTT--------------------------------------------TTC--------------------------T-----TGTTTC------------TCA---------------------------------------------------ATTTA----------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------GTTATAGTCTTA-----TTGTTAAT------T--T-TTTT----AAACG-------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................TATTTGTTTTGTT--------------------------------------------TTC--------------------------T-----TGTTTA------------.............................................................................................................................................................................................................................................................................................................................2340.2510000000010
droPer2
CTAGTTCCCTCAAAAT-------------TG-----------------------------------------------------AAAAT--C---------------------------------------GG---------------ATTAAAGCT----TATATATTTAACAATTTTTATTGCATTTTA--------------------------------------------TTC--------------------------T-----TATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT----------CATAA-------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ATAAAAAATTTTATATAATATGGAACAT-T---------------------------------------------------------------------------------------------------------------------------------------------GGAGTTTTT-------------------------------------------------------------------------------------------------TTTTCGTCTGATTAAA--------------TTT----------------------------------------------------------------------------------------------------AATTATCACTAATCCTAATTATCTTGAATACGAGTCG--ATTGTTGACTGAACTATCCCGATCCGACATTCTG------------------------------------------------------------GTCTGAACTAAGATAAAACAATTTTC-----C-----CCG----------TTTTT-------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCCGATCCGACATTCTG------------------------------------------------------------..............................................................2060.171100000
droBip1
CCTCGTAAGG------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTGAACTTTTTCTTTC-TTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTATTATTTTTTTTTTCTTTAATTGTAAAATTTTTCTTTAATTTTA-------------------------CAATTGT----TAAA---------T----------------------------------------------TGTT-TA-ATTCTTCATTATAATA--------------------------------------ATA----------AATAA-------SizeHit CountTotal NormTotal
No Reads
droKik1
CTTTTAAGTTTAAAAAA--------------------------------------------------------------------------A--------------------------------------------------------GTTTTAACTTTTTTATTGGATTAAGTAT-------------------------------------------------------------------TTTTTTATATATTAAGCACGATTGTTTTT------------------ACGTATCAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAATAAATTTGTATAAATTTTG---GAACGT------------------------------ATA-----AAA----------TTACC-------SizeHit CountTotal NormTotal
No Reads
droFic1
AATTTCTAATTT---------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTAACAAGTTACACTGAATTATT--------------------------------------------ACT--------------------------G-----AATTA-------------------------------------------------------------------------------------------------------------------------------------TTTTGG-------------------------------------------------------------------------------------------------G------------------------A-----AGGCTGCGCCAAGGTGCTCCAGTTCTGT-A--A-----C--AT-TTTTATTACGGACGCCACASizeHit CountTotal NormTotal
No Reads
droEle1
CGATGGTCAC-----------------------------------------------------------------------------------------------------------------------------------------------AACTTTTTTACCTCATTAAGATATGTTTTTGTTTTATA--------------------------------------------TCA--------------------------G-----AAGTT-------------------------------------------------------------------------------------------------------------------------------------TTTTTT--------------------------------------------------------------------------------------------------------------------------T-----AAATATAGTCAAAGTACCGCAATACTGTGAACA-----CGGT-TTTT----ACAAA-------SizeHit CountTotal NormTotal
No Reads
droRho1
TAAGATTAATAA----------------C--------------------------------------------------------------C--------------------------------------------------------------------------AATTAAAAGTTTTTTTTGTTTGTCTTTAAA--------------AATAAATTTTC----------------------------------------------------------------------TGGCTCTAGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATTTGTTTGT---------------------------------------------------------ATA----------AATGA-------SizeHit CountTotal NormTotal
No Reads
droBia1
AACTTGTTCTCCCGGTCC----------------------------------------------------------------AGATGGACT-----------TCCTGGATGTGTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAGTTTTGTGTGTCA------------------------ACAGATTCTTAAACTTTTTAATTTATCTATTTAATCAACATTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC----------CATCT-------SizeHit CountTotal NormTotal
No Reads
droTak1
TGTCTTTAATCG----------------T--------------------------------------------------------------A--------------------------------------------------------------------------GGTTTTCTAGATTTTTTCATGTTTTTTCTAAATATTTTTTTTAAAATAACTTTTT-------------------------------------------------TT------------------ATATTGCAATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-------------------------------------------------------------A-----T--AA-CTT----TATAA-------SizeHit CountTotal NormTotal
No Reads
droEug1
TTTTTATATTTTTAATATTT----------------------------------------------------------------TTAATAT-----------TTTTAAAT------------------------------------------------------------------------------ATT--------------------------------------------TTTAAATATTTTTTAAATATTTTTTTAAATATTTTTT------------------AAATATT--------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTA----------------------------------------------------A-ATATTTTTTAA-ATATTTTTTAAATATT--------------------------------------TTT----------TAAAT-------SizeHit CountTotal NormTotal
No Reads
dm3
TTAGCTTCCTCG----------------C---------------------------------------------------------------------------TTGCGTTTTCTGCTAGCAGTGCAAACCTGTTTTTATTGTTGGTAGTA--------------------GTAATTTTT-------------------------------------------------------------------------------------------------ATTTCGCTACCACAAT--------------T----------------------------------------------------------------------------------------------------TCTTTTGGCTCTAT-------------------------TACCTGT----TGTA---------T-------------------------------------GTTGCG----------------------------GACTCCGTTGACG------------------------TTT----------TGCAA-------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTGT----TGTA---------T-------------------------------------GTTGCG----------------------------GACTCCGTT.....................................................2723.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000300000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTGT----TGTA---------T-------------------------------------GTTGCG----------------------------GACTCCGT......................................................2622.0040000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.........................................................................................................................................TATTGTTGGTAGTA--------------------GTAATTTTT-------------------------------------------------------------------------------------------------ATT.....................................................................................................................................................................................................................................................................................................................................2622.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT----TGTA---------T-------------------------------------GTTGCG----------------------------GACTCCGTTGACG------------------------T........................2821.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.......................................................................................................................................TTTATTGTTGGTAGTA--------------------GTAATTTTT-------------------------------------------------------------------------------------------------A.......................................................................................................................................................................................................................................................................................................................................2621.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
............................................................................................................................................TGTTGGTAGTA--------------------GTAATTTTT-------------------------------------------------------------------------------------------------ATTTCGC.................................................................................................................................................................................................................................................................................................................................2721.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.........................................................................................................................................TATTGTTGGTAGTA--------------------GTAATTTTT-------------------------------------------------------------------------------------------------A.......................................................................................................................................................................................................................................................................................................................................2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
......................................................................................................................................TTTTATTGTTGGTAGTA--------------------GTAATTTTT-------------------------------------------------------------------------------------------------A.......................................................................................................................................................................................................................................................................................................................................2721.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT----TGTA---------T-------------------------------------GTTGCG----------------------------GACTCCGTT.....................................................2321.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTCTAT-------------------------TACCTGT----TGTA---------T-------------------------------------GTTG............................................................................................2721.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT----TGTA---------T-------------------------------------GTTGCG----------------------------GACTCCGTTGA...................................................2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTCTAT-------------------------TACCTGT----TGTA---------T-------------------------------------GT..............................................................................................2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAT-------------------------TACCTGT----TGTA---------T-------------------------------------GTTGCG----------------------------GAC...........................................................2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.....................................................................................................................................TTTTTATTGTTGGTAGTA--------------------GTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2151.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000110000000000001000010000000000000000000000000000000000
..........................................................................................................................................ATTGTTGGTAGTA--------------------GTAATTTTT-------------------------------------------------------------------------------------------------ATT.....................................................................................................................................................................................................................................................................................................................................2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGT----TGTA---------T-------------------------------------GTTGCG----------------------------GACTCCGTT.....................................................2621.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.........................................................................................................TGCGTTTTCTGCTAGCAGTGCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................GTTTTTATTGTTGGTAGTA--------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.6740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTCTAT-------------------------TACCTGT----TGTA---------T-------------------------------------GT..............................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................TTTTATTGTTGGTAGTA--------------------GTAATTTTT-------------------------------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................TTGGTAGTA--------------------GTAATTTTT-------------------------------------------------------------------------------------------------ATTTCGC.................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................T-------------------------------------------------------------------------------------------------ATTTCGCTACCACAAT--------------T----------------------------------------------------------------------------------------------------TCTTTTGGC............................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TTT-------------------------------------------------------------------------------------------------ATTTCGCTACCACAAT--------------T----------------------------------------------------------------------------------------------------TCTTTT...............................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA---------T-------------------------------------GTTGCG----------------------------GACTCCGTTGACG------------------------.........................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-------------------------TACCTGT----TGTA---------T-------------------------------------GTTGCG----------------------------GACTCCG.......................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGT----TGTA---------T-------------------------------------GTTGCG----------------------------GACTCCG.......................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TTCTGCTAGCAGTGCAAACCTGTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGT----TGTA---------T-------------------------------------GTTGCG----------------------------GACTCCGTTGAC..................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA---------T-------------------------------------GTTGCG----------------------------GACTCCGTTGACG------------------------T........................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................CCTGTTTTTATTGTTGGTAGTA--------------------GTAATT............................................................................................................................................................................................................................................................................................................................................................................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTAT-------------------------TACCTGT----TGTA---------T-------------------------------------GTTGCG----------------------------GA............................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGCGTTTTCTGCTAGCAGTGCAAACCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
TTAGCTTCCTCG----------------C---------------------------------------------------------------------------TTGCGTTTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2360.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000100000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTGGCTCTAT-------------------------TACCTGT----TGT................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-------------------------TACCTGT----TGTA---------T-------------------------------------GTTGCG----------------------------GACTCC........................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TTTCGCTACCACAAT--------------T----------------------------------------------------------------------------------------------------TCTTTTGGCT...........................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................TTGTTGGTAGTA--------------------GTAATTTTT-------------------------------------------------------------------------------------------------ATT.....................................................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................TATTGTTGGTAGTA--------------------GTAATTTTT-------------------------------------------------------------------------------------------------ATTT....................................................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.TAGCTTCCTCG----------------C---------------------------------------------------------------------------TTGCGTTTTCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------TACCTGT----TGTA---------T-------------------------------------GTTGCG----------------------------GACTCCGT......................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................TACCACAAT--------------T----------------------------------------------------------------------------------------------------TCTTTTGGCTCTAT-------------------------TAC...........................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCG----------------------------GACTCCGTTGACG------------------------T........................1840.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................GCAAACCTGTTTTTATTGTTGGTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CACAAT--------------T----------------------------------------------------------------------------------------------------TCTTTTGGCTCTAT-------------------------TACCTGT----...................................................................................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CACAAT--------------T----------------------------------------------------------------------------------------------------TCTTTTGGCTCTAT-------------------------TACC..........................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA---------T-------------------------------------GTTGCG----------------------------GACTCCGTTGA...................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------T-------------------------------------GTTGCG----------------------------GACTCCGTT.....................................................1720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................AGTGCAAACCTGTTTTTATTGTTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................TGTTGGTAGTA--------------------GTAATTTTT-------------------------------------------------------------------------------------------------ATT.....................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................CTGTTTTTATTGTTGGTAGTA--------------------GT................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................TTATTGTTGGTAGTA--------------------GTAATTTTT-------------------------------------------------------------------------------------------------ATT.....................................................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
TTAGCTTCCTCG----------------C---------------------------------------------------------------------------TTGCGTTTTCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGTTTTTATTGTTGGTAGTA--------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
TTAGCTTCCTCG----------------C---------------------------------------------------------------------------TTGCGTTTTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................TTGCGTTTTCTGCTAGCAGTGCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................C---------------------------------------------------------------------------TTGCGTTTTCTGCTAGCAGTGCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCG----------------C---------------------------------------------------------------------------TTGCGTTTTCTGCTAGCAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TCCTCG----------------C---------------------------------------------------------------------------TTGCGTTTTCTGCTAGCAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................GTTTTTATTGTTGGTAGTA--------------------GT................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................TTTTTATTGTTGGTAGTA--------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TTTTTATTGTTGGTAGTA--------------------GTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTAGCTTCCTCG----------------C---------------------------------------------------------------------------TTGCGTTTTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.1710000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TAGCTTCCTCG----------------C---------------------------------------------------------------------------TTGCGTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTCTAT-------------------------TACCTGT----T..................................................................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTAGCTTCCTCG----------------C---------------------------------------------------------------------------TTGCGTTTTCTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TCCTCG----------------C---------------------------------------------------------------------------TTGCGTTTTCTGCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
........................................................................................................................................TTATTGTTGGTAGTA--------------------GTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTCTAT-------------------------TACCTGT----TG.................................................................................................................................................2060.1710000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CCAGCCTCCATGATAAGTTTAACATTAT-CGATAGTAG--------------------------------------------A-----------------------------------------------------------------GTTCTACTTCTTGTATGTACTGATTAGCTGTTTTTGTTTTTTT--------------------------------------------TTT--------------------------T-----TTTTTT------------TTAGA--------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------T-------AATAA---T-TTTG----CCGAA-------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................CTACTTCTTGTATGTACTGATTAGCTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
...............................................................................................................................................................TGTATGTACTGATTAGCTGTTTTTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
.............TAAGTTTAACATTAT-CGATAGTAG--------------------------------------------A-----------------------------------------------------------------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
...............................................................................................................................................................TGTATGTACTGATTAGCTGTTTTTGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
..............................................................................................................................................................TTGTATGTACTGATTAGCTGTTTTTGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
............ATAAGTTTAACATTAT-CGATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
...........................................................................................................................................................TTCTTGTATGTACTGATTAGCTGTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
droSec2
TTAACTTTCACTTAGTGA----------T--------------------------------------------------------------A-------------------------------------------------------------------------------GTTTTTTTTTTTTTTTTTTT--------------------------------------------TTT--------------------------------TTTTT-------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------TTCATTA-----AGGCCCTAAT-----------------------------------------AAGGT-------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTTATATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------AGAATACAGTTTTTTCTGTTATTTC--------------------------------------------TAC--------------------------C-----TGTTTTTTTTTTAAAACGTCAAA--------------T----------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------T-------TAAAA---C-CCCT----AATAA-------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TAATTTTGAAAT----------------A--------------------------------------------------------------T--------------------------------------------------------------------------GATTTTTAATTTTATTTATTGCTTTTTCTCCATAACATTTTTATCGGAGACTGAG-------------------------------------------------TT------------------AGATTTTGGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------GTA-----TGG----------TTTTT-------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 02:16 AM