dmo_2233

Name	Class	Family	Strand
Homo6	DNA	hAT-Pegasus	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TAGGATGGAAGCAATTCAAATTCTGTTTTAAGTTGGCAACCAGCCAAATTGTGAGTATTCGAAACACGCCTTTTACAAATATGTGGGTGAGGGTGTGGATCGGTTGGATGGGGGCTAACTTACAAAAAACCCGAAATTAGTTAATATACATATAGTCTACTTTAAAAGTTTGGAGACTGTAGCTCTAAAGGTGTAGGAGATATACATAATTAAATAACTAGTTTTCGATAAGATTTTAGTCGATAGTAAAA ************************************************.....((.((((..(((((((((((((....))))...)))))))))..)))).))..((((.................)))).................((((((((.((..........)))))))))).((((.........))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M060 embryo	V110 male body	M046 female body
..................AATTCTGTTTTAAGTTGGC......................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0
........................GTTTTAAGTTGGCAACCAGCC..............................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0
.........................................................................................................................................................................................TAAAGGTGTAGGAGATATACATAATT........................................	26	0	2	1.00	2	1	1	0
..........GCAATTCAAATTCTGTTTTAAGTTGGC......................................................................................................................................................................................................................	27	0	1	1.00	1	0	0	1
..........................................................................................................................................................................................AAAGGTGTAGGAGATATACATAATT........................................	25	0	2	0.50	1	0	1	0
.........................................................................................................................................................................................TAAAGGTGTAGGAGATATAC..............................................	20	0	4	0.25	1	0	1	0
.............................................................................................................................................................................AGACTGTAGCTCTAAGGGTGTA........................................................	22	1	9	0.11	1	0	1	0
............................................................................CAATATATGGGTGAGGGT.............................................................................................................................................................	18	2	20	0.10	2	0	2	0
.............................................................................................................................................................................AGACTGTAGCTCTAAGGGTGT.........................................................	21	1	11	0.09	1	0	0	1

ATCCTACCTTCGTTAAGTTTAAGACAAAATTCAACCGTTGGTCGGTTTAACACTCATAAGCTTTGTGCGGAAAATGTTTATACACCCACTCCCACACCTAGCCAACCTACCCCCGATTGAATGTTTTTTGGGCTTTAATCAATTATATGTATATCAGATGAAATTTTCAAACCTCTGACATCGAGATTTCCACATCCTCTATATGTATTAATTTATTGATCAAAAGCTATTCTAAAATCAGCTATCATTTT ************************************************.....((.((((..(((((((((((((....))))...)))))))))..)))).))..((((.................)))).................((((((((.((..........)))))))))).((((.........))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M060 embryo	M046 female body	V110 male body	V049 head
..................................CCGTTGGTCGGTTTAACACTCATAAGCT.............................................................................................................................................................................................	28	0	1	5.00	5	4	1	0	0
....................................GTTGGTCGGTTTAACACTCATAAGCT.............................................................................................................................................................................................	26	0	1	2.00	2	1	1	0	0
......................................TGGTCGGTTTAACACTCATAAGCT.............................................................................................................................................................................................	24	0	1	2.00	2	1	1	0	0
.....................................TTGGTCGGTTTAACACTCATAAGCT.............................................................................................................................................................................................	25	0	1	2.00	2	1	1	0	0
..................................................................................................................GATTGAATGTTTTTTGGGCTTTAAT................................................................................................................	25	0	1	1.00	1	0	1	0	0
.......................................................................................................................................................................CAAACCTCTGACATCGAGATTTCCACAT........................................................	28	0	5	0.20	1	1	0	0	0
.......................................................................................................................................................................CAAACCTCTGACATCGAGATTTCCACCT........................................................	28	1	6	0.17	1	1	0	0	0
.............................................................................................................................................................................TCTGACATCGAGATTTCCACAT........................................................	22	0	9	0.11	1	0	1	0	0
...............................................................................................................................................................................TGACATCGAGATTTCCACGT........................................................	20	1	11	0.09	1	0	0	1	0
........................................................................................................................................................................TTACCTCTGACATCGAGATTTCCACAT........................................................	27	2	17	0.06	1	0	1	0	0
..................................................................................................................................................................................................................TTTTATTGATCAGAAGCT.......................	18	2	20	0.05	1	0	0	0	1
...................................................................................................................................................................................ATCGAGATTTCCACATCCTCTATAT...............................................	25	0	20	0.05	1	0	1	0	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6541:2292133-2292383 -	dmo_2233	TAGGATGGAAGCAATT-----CAAATTCTGTTTTAAGT--------------------TGGCAAC--------CAGCCAA--ATTGTGAGTA----------------TTCGAAAC-------------------------------------------ACGCCTTTT-----------------------------------------ACAA---------------------ATATGTGGGTGAGGGTGTGGAT----CGGTTGGATGGGGGCTAACTTACAA----------AAAACCCGAAATTAG-----------TTAATATACATATAGTCTACTTTAAAAGTTTGGAGACTGTAGCTCTAAAGGTGTAGGAGATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA-TAAT---TAAATAACTAGTTTTCGAT-AAGATTTTAGTCGAT-------AGTAAAA
droVir3	scaffold_12734:393070-393314 +		TCTGAAAAAATCAATTGCATATAAATTGTGGTTTAAAT--------------------TGGTTGG--------CAATAAA--AGTTGGGTTA------------------------TTAAC--------------------------------------TT--GATTTATAGCTGTGGGGTGGTAG----------CGGGGAGG---------TGGCGATAGGTATGAAG--------------------------------------------------TGAAA----------GATACTTGAAATACCTATAATA----------TTCTAGAAGC-AACATATCATGTTTGGTGGCTCTAGCTCTTATTATTTACCCAATTTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAACAGGATGTCGATATCGATTTTTATCGAT-------TGCATGG
droGri2	scaffold_15252:14182401-14182539 +		TTGGTTGAGGAGTGAC---------T-------TTTGA--------------------CGAGAAT--------T---------------------------------------------------------------------------------------------------------------------AAAAAATATGAGA---------AGCTTCGAAACTTTTTTAATAATATTCAGAGTATATTATAAAT----CAGTCAGAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATATCT--------------------------TTGTAT---------------AAA--AAATCGATTTATATCGAT-------ATTCGGA
droWil2	scf2_1100000004943:1264564-1264766 +		TTCAA-------------------ATTTGGTATTTTGC--------------------TGGATAT--------TAGTATCAAA-TTTAAGTATGCCAAATTTGCATAA--------TCGAGTTTTTTCAAATTATTGTGGCGAAAAGGGTGTGGCAAAA-------------------------TTTT-TACA---------------------------------------------------------------------------------------AATAC----------AAAATGTG------------------CAAGTA-----------TACATACCAAATATGGTGTCTCTAGCTAGAATAGTTCTTGAGATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACG-TTT-------------------------TTTTTTTAATTGCT-------GGGGCGG
dp5	Unknown_singleton_3952:13033-13103 -		AAAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTGCTCTAGCTCTAATAGTCTCTGAGATCTGTGAATGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGATTTTCGTCATT-------TGTGGGA
droPer2	scaffold_30:564554-564693 -		TTCGA-------------------GCTCTGTGTTAAAC--------------------AAATCTGAGGTGCTCTGGGGAAGGG-GGTCGATGGCGTG----------G----------------------------------------------------------------------------TCGAATCTAAA------------------------------------------------------------------------------------ACAAAA----------AAAAACCGAAATTTTATAAAAA----------TACTCAAAATAACTGTGCAAAGTTTCAAGGCTCTAGCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAA
droAna3	scaffold_12671:133656-133773 -		CTGAAA-------------------TTTGCTTTCCAGA----------------------------------------------------------------------------------------------------------------------------------------------TATATATAATCTATA----------------------------------------------------------GA---AAAAG------------------------------TTTGACATCAAAACTTTTTTAAAAT----------AC---------------------------------TTATT--------------AAACTGGCGCT--------------------------------------------------------------------------------------------------------------------------------ACAGAAATATGTCA--------------------------------------------------------T-TTTCAAGATGGC-------GGTAGAG
droBip1	scf7180000394470:2814-2911 +		TGGGCGTGGTCCAATT-----TATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------CAAAA----------AAAATTCGAAATTCGAAA-----------AAATAAATTAGGCGTATGTGCAAAATTTGAGGCCAATATCTCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------ACTGGAG
droKik1	scf7180000302685:550336-550391 -		TGGGCTGGAAGGAGTT-----CAAGTTCTGCTTCAAGC--------------------TGGCCAC--------CAGTCAA--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------AGTAAGT
droFic1	scf7180000451693:2067-2206 -		GGGGCGTAC----------------------------------------------------------------TCGCAGAGAG-CGAGGGTAGCTTAATTTCAAATAA----------------------------------------------------------------------------TCTAATTTAAAAACAAGAAA---------GGTCATTAAATATGTCG--------------------------------------------------AACAA----------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA-TAAAGGCTAAACAACATAGAAGCTATGACGATTCTATTCATT-------TTCCATA
droEle1	scf7180000491006:972762-972823 +		TGGGCTGGAAGGAGTT-----CAAGTTCTGTTTCAAAC--------------------TGGCCAC--------CAGTCAG--ATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAG-------TGCCCAA
droRho1	scf7180000775624:354-490 +		GGACGGAAGCTAA-C----------TTCGGCAAGCC---------------------------GA---------------------------------------------------------------------------------------------------------------------------------AGTTTTAATA---------CCCTTGCAGACTTTGCCGAAATTG--------------------------------------------------------------------------------------------------------------------------------CT-----------------------------------------------------------------------------------------------------------------AAAACTGAAAAAGTAGCGAAAGG-----------------------AATAAGGTA-----------------------TACA-TAAA---TAAACAAGAG-------AG-AACGCTATAGTCGAG-------TGCGTGA
droBia1	scf7180000302097:14559-14785 -		TCGTCTGATTTTAATA------AAATTTAATTTTAAAT--------------------TCAGAAC--------TAATTGA--AA---------------------------------------------------------------------------ATGTTTTTT-----------------------------------------CCAA---------------------TTATTT--CCCATCAATTT-TTCGTTTGTTCGTATGGCAGCTACA------TGATATGAA----ATTCAGAAC---------------------------------------------------------------------------------------------------------------------TAATAAAAACATTTTATTTACAAGAGTGTGAGGCT---------------------------------------------------------------------------ATATGTTAAAAAACACCAGAGATATAAT--TTT---TAAAAATGTTTTTTCCG--ATAATTCCTATGCAGC-------TATAAGA
droTak1	scf7180000412570:2411-2533 -		TTCGATAGGTATAAAT--------------------------------------ATACACAACAA--------AA-----------------------------------------TCATA--------------------------------------TT-------------------------------------------ATACTTATAACTTATTATACTTCTCGGAAATCT--------------------------------------------------------------------------------------------------------------------------------TTAAAGGGGTAGGCGCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACA-CATT---------------TTA--AAATCGTTAGTGGGCGAT-------TGTGGGC
droEug1	scf7180000409760:496652-496882 -		TGGGAGCATCATAATC-----TATCTCTTATAGTTACC--------------------GAGCTAT--------CAGCTTT--TCTA-GAAAA----------------TCCGAAAA-------------------------------------------CCGTCTTTTGTGCCTTTTGGGCGTATG---------------------------------------------------------------CGTGGG---TGTGG------------------------------CCGGATAGTAGAACCACTTTAAGATGCGCTGGCATATAAAGATTATACTTTCTGAATTTCAACTTTCTAGCTCCAATAGTTCCTGAGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAG-CAAT---T------------------TTAGTTTTTTGCGATTTGTGGGCGTTAGAG
dm3	chrX:18703637-18703691 +		TGGGCTGGAAGGAGTT-----TAAATTCTGCTTTAAGC--------------------TGGCCAC--------AAGTCAG--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------TG-TAAG
droSim2	node_22030:5656-5895 -		AAATTT-------------------TTTGGTGAGTCGATAGAAAACTTATAAATATATGAAAAAC--------TA-----------------------------------------TCAAA--------------------------------------AC-------------------------------------------ATTTTACAA---------------------ACGTGTGGGCGAAGCAGTT-TTTGGCGGTTCGGTTGA----CAATTTACAATAATATGAAAATATATCAAAACATTTTGCAAAAGT----------------------------------------------------------------G-------------------------------------------------------------------TGGGCGTGAAAATTTTGGTAGGATTGTTTGCGTTAAAGAAGGCGTGGCAAAAAGTTTTTTGGCAAGTCTATA------------------------------------------------------------------GAAATTTACAAGACT-------AATAAAA
droSec2	scaffold_13508:385-608 -		AAATTT-------------------TTTGGTGAGTCGATAGAAAACTAATAAATATATGAAAAAC--------TA-----------------------------------------TCAAA--------------------------------------AC-------------------------------------------ATTTTACAA---------------------ACGTGTGGGCGAAGCAGTT-TTTGGCGGTTCGGTTGA----CACTTTACAATAATATGAAAATATAACAAAACATTTTGCAAGAGT----------------------------------------------------------------G-------------------------------------------------------------------TGGGCGTGGAAATTTTGGTAGGATTGTGTACGTTAAAGAAGGCGTGGCAAAAATTTTTCTGGCAAGTCTA----------------------------------------------------------------------------------T-------AGAAATT
droYak3	v2_chr2L_random_028:467249-467398 -		AATTTAC----------------------------------AAAACTAATA--------------------------------------------------------------------------------------------------------------------------------------------AAAA----------------------------------------------------------------------------------------------ATTAAAAAATATCAAAACCTTTTTTAAAAGT----------------------------------------------------------------G-------------------------------------------------------------------TGGGCGTGGCAGCTTTGGTCACTTTGTGGGCGTTAGGGTGGGCGTGGCAAAAAGTTTTTTGGCAAATCGATAA--------------------------------------------------------------AA-ATTTACAAGACCAAT-------AAAAAAA
droEre2	scaffold_4929:19400806-19400914 -		GAAATTAGCAAAAAT--------------------------------AATA--------------------------------------------------------------------------------------------------------------------------------------------AAAT---AATA--ATTTTTAAA---------------------AAGT--------------------------------------------------------------------------------------------------------------------------------------------------ATGGGCGTGGCAGCCTTGAGTGGTGTATGAAATTGGCAAGTAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------AA-ATGGGTAAAATCAAC-------AACAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

TAGGATGGAAGCAATT-----CAAATTCTGTTTTAAGT--------------------TGGCAAC--------CAGCCAA--ATTGTGAGTA----------------TTCGAAAC-------------------------------------------ACGCCTTTT-----------------------------------------ACAA---------------------ATATGTGGGTGAGGGTGTGGAT----CGGTTGGATGGGGGCTAACTTACAA----------AAAACCCGAAATTAG-----------TTAATATACATATAGTCTACTTTAAAAGTTTGGAGACTGTAGCTCTAAAGGTGTAGGAGATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA-TAAT---TAAATAACTAGTTTTCGAT-AAGATTTTAGTCGAT-------AGTAAAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................AATTCTGTTTTAAGT--------------------TGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.............................GTTTTAAGT--------------------TGGCAAC--------CAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................TAAAGGTGTAGGAGATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA-TAAT---T................................................	26	2	1.00	2	0	0	0	0	1	1
..........GCAATT-----CAAATTCTGTTTTAAGT--------------------TGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................AAAGGTGTAGGAGATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA-TAAT---T................................................	25	2	0.50	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................TAAAGGTGTAGGAGATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC..........................................................	20	4	0.25	1	0	0	0	0	0	1

droVir3

TCTGAAAAAATCAATTGCATATAAATTGTGGTTTAAAT--------------------TGGTTGG--------CAATAAA--AGTTGGGTTA------------------------TTAAC--------------------------------------TT--GATTTATAGCTGTGGGGTGGTAG----------CGGGGAGG---------TGGCGATAGGTATGAAG--------------------------------------------------TGAAA----------GATACTTGAAATACCTATAATA----------TTCTAGAAGC-AACATATCATGTTTGGTGGCTCTAGCTCTTATTATTTACCCAATTTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAACAGGATGTCGATATCGATTTTTATCGAT-------TGCATGG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................TGGGTTA------------------------TTAAC--------------------------------------TT--GATTTATAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	6.30	126	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	126	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TATCATGTTTGGTGGCTCTAGCTCT............................................................................................................................................................................................................................................................	25	20	1.70	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	6	4	2	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TTCTAGAAGC-AACATATCATGTTTGG.........................................................................................................................................................................................................................................................................	26	20	1.40	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	16	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TAAATTGTGGTTTAAAT--------------------TGGTTGG--------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	1.00	20	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	6	0	0	0	2	0	0	2	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TAAATTGTGGTTTAAAT--------------------TGGTTGG--------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.95	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TA----------TTCTAGAAGC-AACATATCATGTTTGG.........................................................................................................................................................................................................................................................................	28	20	0.70	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	6	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TA----------TTCTAGAAGC-AACATATCATGTTTG..........................................................................................................................................................................................................................................................................	27	20	0.70	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	9	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TATCATGTTTGGTGGCTCTAGCTC.............................................................................................................................................................................................................................................................	24	20	0.65	13	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	3	0	0	0	2	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TAGAAGC-AACATATCATGTTTGGTGGC.....................................................................................................................................................................................................................................................................	27	20	0.60	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TGGGTTA------------------------TTAAC--------------------------------------TT--GATTTATAGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.55	11	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TAGAAGC-AACATATCATGTTTGGTGG......................................................................................................................................................................................................................................................................	26	20	0.50	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TTCTAGAAGC-AACATATCATGTTTGGT........................................................................................................................................................................................................................................................................	27	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................C-AACATATCATGTTTGGTGGCTCTAGC...............................................................................................................................................................................................................................................................	27	20	0.40	8	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TGGGTTA------------------------TTAAC--------------------------------------TT--GATTTATAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.40	8	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TAAATTGTGGTTTAAAT--------------------TGGTTGG--------CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TAAA--AGTTGGGTTA------------------------TTAAC--------------------------------------TT--GA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TAAATTGTGGTTTAAAT--------------------TGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TATCATGTTTGGTGGCTCTAGCTCTTA..........................................................................................................................................................................................................................................................	27	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	2	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TTCTAGAAGC-AACATATCATGTTTG..........................................................................................................................................................................................................................................................................	25	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TAGAAGC-AACATATCATGTTTGGTG.......................................................................................................................................................................................................................................................................	25	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TATCATGTTTGGTGGCTCTAGCTCTTAT.........................................................................................................................................................................................................................................................	28	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TAAATTGTGGTTTAAAT--------------------TGGTTGG--------CAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TGGGTTA------------------------TTAAC--------------------------------------TT--GATTTATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TATCATGTTTGGTGGCTCTAG................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TTGTGGTTTAAAT--------------------TGGTTGG--------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TGGGGTGGTAG----------CGGGGAGG---------TG....................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TAAAT--------------------TGGTTGG--------CAATAAA--AGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TGGGTTA------------------------TTAAC--------------------------------------TT--GATTTATAGCTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACAGGATGTCGATATCGATTT......................	25	20	0.15	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TAAA--AGTTGGGTTA------------------------TTAAC--------------------------------------TT--GATTTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................C-AACATATCATGTTTGGTGGCTCTAGCT..............................................................................................................................................................................................................................................................	28	20	0.15	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TTGTGGTTTAAAT--------------------TGGTTGG--------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGATGTCGATATCGATT.......................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACAGGATGTCGATATCGATTTT.....................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GC-AACATATCATGTTTGGTGGCTCTAG................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TAAAT--------------------TGGTTGG--------CAATAAA--AGTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AATTGTGGTTTAAAT--------------------TGGTTGA--------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TATCATGTTTGGTGGCTCTAGCTCTT...........................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACAGGATGTCGATATCG..........................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TATCATGTTTGGTGGCTCTAGCT..............................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GCTCTTATTATTTACCCAATTTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA...............................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TTCTAGAAGC-AACATATCATGTTTGGTG.......................................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GTGGTTTAAAT--------------------TGGTTGG--------CAATAAA--A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AAATTGTGGTTTAAAT--------------------TGGTTGG--------CAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CTAGAAGC-AACATATCATGTTTGGTG.......................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TAGAAGC-AACATATCATGTTTGG.........................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................AGC-AACATATCATGTTTGGTGGCTC...................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................TTA------------------------TTAAC--------------------------------------TT--GATTTATAGCTGTGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TAGAAGC-AACATATCATGTTTGGT........................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TTCTAGAAGC-AACATATCATGTTT...........................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AC--------------------------------------TT--GATTTATAGCTGTGGGGTGGTAG----------.......................................................................................................................................................................................................................................................................................................................................................................................................................................	27	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................A------------------------TTAAC--------------------------------------TT--GATTTATAGCTGTGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TATAGCTGTGGGGTGGTAG----------CGG....................................................................................................................................................................................................................................................................................................................................................................................................................................	22	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TTATAGCTGTGGGGTGGTAG----------C......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TATAGCTGTGGGGTGGTAG----------CC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TT--GATTTATAGCTGTGGGGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................ACATATCATGTTTGGTGGCTCTAGC...............................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGTGGTTTAAAT--------------------TGGTTGG--------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TAGAAGC-AACATATCATGTTTG..........................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CTAGAAGC-AACATATCATGTTTGGTGG......................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TTAAAT--------------------TGGTTGG--------CAATAAA--AGTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACAGGATGTCGATATCGATT.......................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AAATTGTGGTTTAAAT--------------------TGGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TCATGTTTGGTGGCTCTAGC...............................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................A----------TTCTAGAAGC-AACATATCATGTTTGG.........................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TAATA----------TTCTAGAAGC-AACATATCATG..............................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TTTAAAT--------------------TGGTTGG--------CAATAAA--AGTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................GAAGC-AACATATCATGTTTGGTGGCTC...................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TGGCTCTAGCTCTTATTATTTACCCA...............................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................ATATCATGTTTGGTGGCTCTAGCTC.............................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GC-AACATATCATGTTTGGTGGCTC...................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CATATCATGTTTGGTGGCTCTAGCTC.............................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................GGTTGG--------CAATAAA--AGTTGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CTCTAGCTCTTATTATTTACCCAATTTGC.........................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................ATA----------TTCTAGAAGC-AACATATCATG..............................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TGGGTTA------------------------TTAAC--------------------------------------TT--GATTTATAGCTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TCTAGAAGC-AACATATCATGTTTGGT........................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................GGTTGG--------CAATAAA--AGTTGGGTTA------------------------TT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAGGATGTCGATATCGATTTTTA...................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATATCGATTTTTATCGAT-------T......	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TAAA--AGTTGGGTTA------------------------TTAAC--------------------------------------TT--GATT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAACAGGATGTCGATATCGAT........................	27	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................TATTTACCCAATTTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAACA........................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGTTTGGTGGCTCTAGCTCTTATTAT......................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TAAA--AGTTGGGTTA------------------------TTAAC--------------------------------------TT--GATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................C-AACATATCATGTTTGGTGGCTC...................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GTGGTTTAAAT--------------------TGGTTGG--------CAATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AAATTGTGGTTTAAAT--------------------TGGTTGG--------CAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TTTACCCAATTTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAA..........................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................AAT--------------------TGGTTGG--------CAATAAA--AGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TTGGGTTA------------------------TTAAC--------------------------------------TT--GATTTATAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TTTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAACAGGATGTCGATA.............................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................TGGTTGG--------CAATAAA--AGTTGGGTTA------------------------TTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AAATTGTGGTTTAAAT--------------------TGGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGTGGTTTAAAT--------------------TGGTTGG--------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TCATGTTTGGTGGCTCTAG................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................TTATTATTTACCCAATTTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................AT--------------------TGGTTGG--------CAATAAA--AGTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................C-AACATATCATGTTTGGTGGCTCTA.................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TAAAT--------------------TGGTTGG--------CAATAAA--AGTTGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TACCCAATTTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAACAGGATG...................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAACAGGATGTCGATA.............................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................C-AACATATCATGTTTGGTGGCTCTAG................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TATCATGTTTGGTGGCTCTAGC...............................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AATTGTGGTTTAAAT--------------------TGGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGCTCTTATTATTTACCCAATTTG..........................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................ATGTTTGGTGGCTCTAGCTCTTAT.........................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TAAA--AGTTGGGTTA------------------------TTAAC--------------------------------------TT--GAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................C-AACATATCATGTTTGGTGGCTCT..................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................TTTGGTGGCTCTAGCTCT............................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................T--------------------TGGTTGG--------CAATAAA--AGTTGGGTTA------------------------TT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TAAATTGTGGTTTAAAT--------------------TGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................ATATCATGTTTGGTGGCTCTA.................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GC-AACATATCATGTTTGGTGGCTCTAGC...............................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CTCTAGCTCTTATTATTTACCCAATTTG..........................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................AAAT--------------------TGGTTGG--------CAATAAA--AGTTGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................T--------------------TGGTTGG--------CAATAAA--AGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TATTATTTACCCAATTTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA.............................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATATCGATTTTTATCGAT-------T......	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................AAGC-AACATATCATGTTTGGTGGC.....................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GTGGTTTAAAT--------------------TGGTTGG--------CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATTGTGGTTTAAAT--------------------TGGTTGG--------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TTTAAAT--------------------TGGTTGG--------CAATAAA--AGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGTGGTTTAAAT--------------------TGGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TATTATTTACCCAATTTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA...........................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATATCGATTTTTATCG................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AACATATCATGTTTGGTGGCTCTAGC...............................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TA----------TTCTAGAAGC-AACATATCATGTTT...........................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGATATCGATTTTTATCGAT-------.......	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TGTTTGGTGGCTCTAGCTCTTATT........................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TCATGTTTGGTGGCTCTAGCTCTTATTA.......................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AATAAA--AGTTGGGTTA------------------------TTAAC--------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TTTAAAT--------------------TGGTTGG--------CAATAAA--AGTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................G--------CAATAAA--AGTTGGGTTA------------------------TTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ACATATCATGTTTGGTGGCTCTAGCT..............................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TA----------TTCTAGAAGC-AACATATCATGTG............................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AATA----------TTCTAGAAGC-AACATATCATG..............................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AATAAA--AGTTGGGTTA------------------------TTAAC--------------------------------------TT--GAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGTGGTTTAAAT--------------------TGGTTGG--------CAATAAA--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ACATATCATGTTTGGTGGCTCTAGCTC.............................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TCATGTTTGGTGGCTCTAGCTCTTA..........................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TTAAAT--------------------TGGTTGG--------CAATAAA--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ACATATCATGTTTGGTGGCTCT..................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TTTACCCAATTTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAACAGA......................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ACATATCATGTTTGGTGGCT....................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

TTGGTTGAGGAGTGAC---------T-------TTTGA--------------------CGAGAAT--------T---------------------------------------------------------------------------------------------------------------------AAAAAATATGAGA---------AGCTTCGAAACTTTTTTAATAATATTCAGAGTATATTATAAAT----CAGTCAGAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATATCT--------------------------TTGTAT---------------AAA--AAATCGATTTATATCGAT-------ATTCGGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

TTCAA-------------------ATTTGGTATTTTGC--------------------TGGATAT--------TAGTATCAAA-TTTAAGTATGCCAAATTTGCATAA--------TCGAGTTTTTTCAAATTATTGTGGCGAAAAGGGTGTGGCAAAA-------------------------TTTT-TACA---------------------------------------------------------------------------------------AATAC----------AAAATGTG------------------CAAGTA-----------TACATACCAAATATGGTGTCTCTAGCTAGAATAGTTCTTGAGATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACG-TTT-------------------------TTTTTTTAATTGCT-------GGGGCGG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................................................................................................................................................................................................................................TACCAAATATGGTGTCTCTAG................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0
..........................TTGGTATTTTGC--------------------TGGATAT--------TAGTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	2	0
............................................................................TATCAAA-TTTAAGTATGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	1	0	0	0
..............................TATTTTGC--------------------TGGATAT--------TAGTATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
...AA-------------------ATTTGGTATTTTGC--------------------TGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................GGTGTCTCTAGCTAGAAT.........................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0
...................................TGC--------------------TGGATAT--------TAGTATCAAA-TTTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................TATGGTGTCTCTAGCTAGAATAGTT.....................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0

dp5

AAAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTGCTCTAGCTCTAATAGTCTCTGAGATCTGTGAATGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGATTTTCGTCATT-------TGTGGGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................TCTCTGAGATCTGTGAATGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA...........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................TCTCTGAGATCTGTGAATGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC............................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TGGTTGCTCTAGCTCTAATAGTC.....................................................................................................................................................................................................................................................	23	4	0.50	2	0	0	0	0	0	0	0	0	2	0
..............................................................................................................................................................................................................................................................................................................................................................................TAATAGTCTCTGAGATCTGTGAAT.....................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.....T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTGCTCTAGCTCTAATAG.......................................................................................................................................................................................................................................................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................CTAGCTCTAATAGTCTCTGAG...............................................................................................................................................................................................................................................	21	9	0.11	1	0	1	0	0	0	0	0	0	0	0

droPer2

TTCGA-------------------GCTCTGTGTTAAAC--------------------AAATCTGAGGTGCTCTGGGGAAGGG-GGTCGATGGCGTG----------G----------------------------------------------------------------------------TCGAATCTAAA------------------------------------------------------------------------------------ACAAAA----------AAAAACCGAAATTTTATAAAAA----------TACTCAAAATAACTGTGCAAAGTTTCAAGGCTCTAGCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
................................................................GAGGTGCTCTGGGGAAGGG-GGTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.33	2	0	0	0	0	0	2

droAna3

CTGAAA-------------------TTTGCTTTCCAGA----------------------------------------------------------------------------------------------------------------------------------------------TATATATAATCTATA----------------------------------------------------------GA---AAAAG------------------------------TTTGACATCAAAACTTTTTTAAAAT----------AC---------------------------------TTATT--------------AAACTGGCGCT--------------------------------------------------------------------------------------------------------------------------------ACAGAAATATGTCA--------------------------------------------------------T-TTTCAAGATGGC-------GGTAGAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TGGGCGTGGTCCAATT-----TATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------CAAAA----------AAAATTCGAAATTCGAAA-----------AAATAAATTAGGCGTATGTGCAAAATTTGAGGCCAATATCTCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------ACTGGAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGGGCTGGAAGGAGTT-----CAAGTTCTGCTTCAAGC--------------------TGGCCAC--------CAGTCAA--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------AGTAAGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGGGCGTAC----------------------------------------------------------------TCGCAGAGAG-CGAGGGTAGCTTAATTTCAAATAA----------------------------------------------------------------------------TCTAATTTAAAAACAAGAAA---------GGTCATTAAATATGTCG--------------------------------------------------AACAA----------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA-TAAAGGCTAAACAACATAGAAGCTATGACGATTCTATTCATT-------TTCCATA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGGGCTGGAAGGAGTT-----CAAGTTCTGTTTCAAAC--------------------TGGCCAC--------CAGTCAG--ATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAG-------TGCCCAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGACGGAAGCTAA-C----------TTCGGCAAGCC---------------------------GA---------------------------------------------------------------------------------------------------------------------------------AGTTTTAATA---------CCCTTGCAGACTTTGCCGAAATTG--------------------------------------------------------------------------------------------------------------------------------CT-----------------------------------------------------------------------------------------------------------------AAAACTGAAAAAGTAGCGAAAGG-----------------------AATAAGGTA-----------------------TACA-TAAA---TAAACAAGAG-------AG-AACGCTATAGTCGAG-------TGCGTGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCGTCTGATTTTAATA------AAATTTAATTTTAAAT--------------------TCAGAAC--------TAATTGA--AA---------------------------------------------------------------------------ATGTTTTTT-----------------------------------------CCAA---------------------TTATTT--CCCATCAATTT-TTCGTTTGTTCGTATGGCAGCTACA------TGATATGAA----ATTCAGAAC---------------------------------------------------------------------------------------------------------------------TAATAAAAACATTTTATTTACAAGAGTGTGAGGCT---------------------------------------------------------------------------ATATGTTAAAAAACACCAGAGATATAAT--TTT---TAAAAATGTTTTTTCCG--ATAATTCCTATGCAGC-------TATAAGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTCGATAGGTATAAAT--------------------------------------ATACACAACAA--------AA-----------------------------------------TCATA--------------------------------------TT-------------------------------------------ATACTTATAACTTATTATACTTCTCGGAAATCT--------------------------------------------------------------------------------------------------------------------------------TTAAAGGGGTAGGCGCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACA-CATT---------------TTA--AAATCGTTAGTGGGCGAT-------TGTGGGC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGGGAGCATCATAATC-----TATCTCTTATAGTTACC--------------------GAGCTAT--------CAGCTTT--TCTA-GAAAA----------------TCCGAAAA-------------------------------------------CCGTCTTTTGTGCCTTTTGGGCGTATG---------------------------------------------------------------CGTGGG---TGTGG------------------------------CCGGATAGTAGAACCACTTTAAGATGCGCTGGCATATAAAGATTATACTTTCTGAATTTCAACTTTCTAGCTCCAATAGTTCCTGAGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAG-CAAT---T------------------TTAGTTTTTTGCGATTTGTGGGCGTTAGAG	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGGGCTGGAAGGAGTT-----TAAATTCTGCTTTAAGC--------------------TGGCCAC--------AAGTCAG--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------TG-TAAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
TGGGCTGGAAGGAGTT-----TAAATTCTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGGGCTGGAAGGAGTT-----TAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GCTGGAAGGAGTT-----TAAATTCTGCTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.GGGCTGGAAGGAGTT-----TAAATTCTGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGGGCTGGAAGGAGTT-----TAAATTCTGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GCTGGAAGGAGTT-----TAAATTCTGCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AAATTT-------------------TTTGGTGAGTCGATAGAAAACTTATAAATATATGAAAAAC--------TA-----------------------------------------TCAAA--------------------------------------AC-------------------------------------------ATTTTACAA---------------------ACGTGTGGGCGAAGCAGTT-TTTGGCGGTTCGGTTGA----CAATTTACAATAATATGAAAATATATCAAAACATTTTGCAAAAGT----------------------------------------------------------------G-------------------------------------------------------------------TGGGCGTGAAAATTTTGGTAGGATTGTTTGCGTTAAAGAAGGCGTGGCAAAAAGTTTTTTGGCAAGTCTATA------------------------------------------------------------------GAAATTTACAAGACT-------AATAAAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGTGGCAAAAAGTTTTTTGGCAA......................................................................................................	26	3	1.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCGTGGCAAAAAGTTTTTTGGCA.......................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAAGTCTATA------------------------------------------------------------------GAAATT.......................	19	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCAAGTCTATA------------------------------------------------------------------GAAATTTACAAGA................	27	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TCAAAACATTTTGCAAAAGT----------------------------------------------------------------G-------------------------------------------------------------------TGGGC..................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................AACATTTTGCAAAAGT----------------------------------------------------------------G-------------------------------------------------------------------TGGGCGTG...............................................................................................................................................................	25	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................AAAAGT----------------------------------------------------------------G-------------------------------------------------------------------TGGGCGTGAA.............................................................................................................................................................	17	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TTTGCAAAAGT----------------------------------------------------------------G-------------------------------------------------------------------TGGGC..................................................................................................................................................................	17	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TTGCAAAAGT----------------------------------------------------------------G-------------------------------------------------------------------TGGGC..................................................................................................................................................................	16	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................AAAACATTTTGCAAAAGT----------------------------------------------------------------G-------------------------------------------------------------------T......................................................................................................................................................................	20	19	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................ATTTTGCAAAAGT----------------------------------------------------------------G-------------------------------------------------------------------T......................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------GAAATTTACAAGACT-------AAT....	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AAATTT-------------------TTTGGTGAGTCGATAGAAAACTAATAAATATATGAAAAAC--------TA-----------------------------------------TCAAA--------------------------------------AC-------------------------------------------ATTTTACAA---------------------ACGTGTGGGCGAAGCAGTT-TTTGGCGGTTCGGTTGA----CACTTTACAATAATATGAAAATATAACAAAACATTTTGCAAGAGT----------------------------------------------------------------G-------------------------------------------------------------------TGGGCGTGGAAATTTTGGTAGGATTGTGTACGTTAAAGAAGGCGTGGCAAAAATTTTTCTGGCAAGTCTA----------------------------------------------------------------------------------T-------AGAAATT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCGTGGAAATTTTGGTAT..................................................................................................................................................	21	4	0.25	1	1	0	0	0

droYak3

AATTTAC----------------------------------AAAACTAATA--------------------------------------------------------------------------------------------------------------------------------------------AAAA----------------------------------------------------------------------------------------------ATTAAAAAATATCAAAACCTTTTTTAAAAGT----------------------------------------------------------------G-------------------------------------------------------------------TGGGCGTGGCAGCTTTGGTCACTTTGTGGGCGTTAGGGTGGGCGTGGCAAAAAGTTTTTTGGCAAATCGATAA--------------------------------------------------------------AA-ATTTACAAGACCAAT-------AAAAAAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................................................................................................................................................................TAAAAGT----------------------------------------------------------------G-------------------------------------------------------------------TGGGCGTGGCAGCTTTGGT....................................................................................................................................................	27	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGTGGCAGCTTTGGT....................................................................................................................................................	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGGCGTTAGGGTGGGCG...........................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GAAATTAGCAAAAAT--------------------------------AATA--------------------------------------------------------------------------------------------------------------------------------------------AAAT---AATA--ATTTTTAAA---------------------AAGT--------------------------------------------------------------------------------------------------------------------------------------------------ATGGGCGTGGCAGCCTTGAGTGGTGTATGAAATTGGCAAGTAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------AA-ATGGGTAAAATCAAC-------AACAAAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dmo_2233

scaffold_6541:2292183-2292333 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads