dmo_2230

CDS [Dmoj\GI14233-cds]; exon [dmoj_GLEANR_14555:1]; CDS [Dmoj\GI14233-cds]; exon [dmoj_GLEANR_14555:2]; intron [Dmoj\GI14233-in]

##################################################--------------------------------------------------------------################################################## GTCAACCAGCGAGGAGGAGAGCGTGGCCACGGATGGCTCGTGGTCGCCAGGTAGCTGGACCAGTGAAAAAGAGGACAGGGTATGGTCACCGGTGACCTCGCCAGTGGCGCAGCCTGGGAGGAGCGGCAGGAGGAGGAGCGGTGGGACGAGTCGCTGGTCAGC ************************************************....(((..(((.((.....((((.((.(((......)))..)).))))..)).)))..)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body	V041 embryo	V056 head	V049 head
.....CCAGCGAGGAGGAGAGCGTGGC.......................................................................................................................................	22	0	3	14.00	42	28	11	0	3	0	0
.....CCAGCGAGGAGGAGAGCGTGG........................................................................................................................................	21	0	3	11.67	35	32	0	0	3	0	0
......................................................................GAGGACAGGGTATGGTCACCGG......................................................................	22	0	1	11.00	11	9	1	1	0	0	0
.....CCAGCGAGGAGGAGAGCGTGGCC......................................................................................................................................	23	0	3	4.00	12	7	5	0	0	0	0
.....CCAGCGAGGAGGAGAGCGTG.........................................................................................................................................	20	0	3	3.33	10	9	1	0	0	0	0
......................................................................GAGGACAGGGTATGGTCACCGGTGACC.................................................................	27	0	1	3.00	3	3	0	0	0	0	0
......................................................................GAGGACAGGGTATGGTCACCGGTG....................................................................	24	0	1	2.00	2	2	0	0	0	0	0
......CAGCGAGGAGGAGAGCGTGG........................................................................................................................................	20	0	3	1.67	5	5	0	0	0	0	0
.....CCAGCGAGGAGGAGAGCGTGGCCAC....................................................................................................................................	25	0	3	1.33	4	4	0	0	0	0	0
......................................................................GAGGACAGGGTATGGTCACCGGTGAT..................................................................	26	1	1	1.00	1	1	0	0	0	0	0
......................................................................GAGGACAGGGTATGGTCACCGGTGAC..................................................................	26	0	1	1.00	1	1	0	0	0	0	0
......................................................................GAGGACGGGGTATGGTCACCGG......................................................................	22	1	1	1.00	1	1	0	0	0	0	0
......................................................................GAGGACAGGGTATGGTCACCGGT.....................................................................	23	0	1	1.00	1	0	1	0	0	0	0
......................................................................GAGGACAGGGTATAGTCACCGG......................................................................	22	1	1	1.00	1	1	0	0	0	0	0
.....CCAGCGAGGAGGAGAGCGT..........................................................................................................................................	19	0	3	1.00	3	2	1	0	0	0	0
.......................................................................AGGACAGGGTATGGTCACCGGTG....................................................................	23	0	1	1.00	1	1	0	0	0	0	0
......................................................................GAGGACAGGGTATGGTCACCGGTT....................................................................	24	1	1	1.00	1	1	0	0	0	0	0
......................................................................GAGGACAGGGTATGGTCACCGGTGA...................................................................	25	0	1	1.00	1	1	0	0	0	0	0
......................................................................GAGGACAGGGTATGGTCACC........................................................................	20	0	1	1.00	1	1	0	0	0	0	0
......................................................................GAGGACAGGGTATGGTCACCG.......................................................................	21	0	1	1.00	1	1	0	0	0	0	0
.....CCAGCGAGGAGGAGAGCG...........................................................................................................................................	18	0	3	0.67	2	2	0	0	0	0	0
.....CCAGCGAGGAGGAGAGCGTGGCCA.....................................................................................................................................	24	0	3	0.67	2	2	0	0	0	0	0
......CAGCGAGGAGGAGAGCGTGGC.......................................................................................................................................	21	0	3	0.67	2	2	0	0	0	0	0
.....CCAGCGAGGAGGAGAGCGTGGCCACGG..................................................................................................................................	27	0	3	0.67	2	1	0	1	0	0	0
.............................................................................................................................................TGGGACGAGTCGCTGGTCAGC	21	0	11	0.55	6	0	4	1	1	0	0
.................................................................................AGGGTCATCGGTGACGTCGCC............................................................	21	3	2	0.50	1	0	0	0	0	1	0
.............................................................................................GAACTCGCAAGGGGCGCAGCC................................................	21	3	2	0.50	1	0	0	1	0	0	0
......CAGCGAGGAGGAGAGCGTG.........................................................................................................................................	19	0	3	0.33	1	1	0	0	0	0	0
.....CCAGCGAGGAGGAGAGCGTGGCCTT....................................................................................................................................	25	2	3	0.33	1	1	0	0	0	0	0
.TCAACCAGCGAGGAGGAGAGC............................................................................................................................................	21	0	3	0.33	1	0	1	0	0	0	0
.........................................................GACTAGTGCAGAAGAGGACA.....................................................................................	20	3	3	0.33	1	0	0	1	0	0	0
...................................................................................................GCCAGTGGCACAGCCGGGTAG..........................................	21	3	3	0.33	1	1	0	0	0	0	0
.....CCAGCGAGGAGGAGAGCGTGGTG......................................................................................................................................	23	2	3	0.33	1	1	0	0	0	0	0
........................................................................................................TGGCGCAGCCTGGGAGGAGCGGCAG.................................	25	0	7	0.29	2	2	0	0	0	0	0
.................................................................................................ACGCCAGTGGCACAGCCGGGG............................................	21	3	4	0.25	1	0	0	0	0	0	1
............................................................GAGTGCAAAAGAGGACAG....................................................................................	18	2	5	0.20	1	1	0	0	0	0	0
.............................................................................................................................................TGGGACGAGTCGCTGGTCAG.	20	0	11	0.18	2	2	0	0	0	0	0
.............................................................................................................................................TTGGACGAGTCGCTGGTCAGC	21	1	11	0.18	2	1	1	0	0	0	0
...CTCCAGCGAGGAGGAGAGCGTG.........................................................................................................................................	22	2	6	0.17	1	1	0	0	0	0	0
..................................................................................................................TGGGAGGAGCGGCAGGAGA.............................	19	1	8	0.13	1	1	0	0	0	0	0
............................................................................................................................GGCAGGAGGAGGAGCGGTGG..................	20	0	8	0.13	1	0	0	1	0	0	0
..............AGGAGAGCGTGGCCACGGATGGCTC...........................................................................................................................	25	0	9	0.11	1	1	0	0	0	0	0
........................................................................................................TGGCGCAGCCTGGGAGGAGCGC....................................	22	1	9	0.11	1	1	0	0	0	0	0
........................................................................................................TTGCGCAGCCTGGGAGGAG.......................................	19	1	9	0.11	1	0	1	0	0	0	0
........................................................................................................TGGCGCAGCCTGGGAGGAGCGG....................................	22	0	9	0.11	1	1	0	0	0	0	0
........................................................................................................TGGCGCAGCCTGGGAGGAGC......................................	20	0	9	0.11	1	0	0	0	1	0	0
........................................................................................................TGGCGCAGCCTGGGGGGAGCGT....................................	22	2	9	0.11	1	1	0	0	0	0	0
...........................................................................................................CGCAGCCCGGGCGGAGCGGCC..................................	21	3	10	0.10	1	0	0	1	0	0	0
.......................................................................................................................................GAGCGGTGGGACGAGTCGCTGGT....	23	0	11	0.09	1	1	0	0	0	0	0
........................................................................................................................................AGCGGTGGGACGAGTCGCTGGT....	22	0	11	0.09	1	1	0	0	0	0	0
.............................................................................................................................................TGGGAGGAGTCGCTGGTCAGC	21	1	11	0.09	1	0	1	0	0	0	0
................................................................................................CACGCCAGTGGCACAGCCGG..............................................	20	3	11	0.09	1	0	0	0	0	1	0
.............................................................................................................................................TCGGACGAGTCGCTGGTCAGC	21	1	11	0.09	1	0	1	0	0	0	0
................................................................................................................................CGAGGAGGAGCGGTGGCACCA.............	21	3	14	0.07	1	1	0	0	0	0	0
..................................................................................................CGCCAGTGGCACAGCCGG..............................................	18	2	19	0.05	1	1	0	0	0	0	0
....................................................................TGGAGGACAGTGTATGGT............................................................................	18	3	20	0.05	1	0	1	0	0	0	0
............................................................GAGTGCAGAAGAGGACAGG...................................................................................	19	3	20	0.05	1	0	0	1	0	0	0
............................................................GAGTGAAGAAGAGGACAGTG..................................................................................	20	3	20	0.05	1	0	0	1	0	0	0
....................................................................................................................................GATGAGGGGTGTGACGAGT...........	19	3	20	0.05	1	0	0	0	0	1	0

##################################################--------------------------------------------------------------##################################################
GTCAACCAGCGAGGAGGAGAGCGTGGCCACGGATGGCTCGTGGTCGCCAGGTAGCTGGACCAGTGAAAAAGAGGACAGGGTATGGTCACCGGTGACCTCGCCAGTGGCGCAGCCTGGGAGGAGCGGCAGGAGGAGGAGCGGTGGGACGAGTCGCTGGTCAGC
**************************************************....(((..(((.((.....((((.((.(((......)))..)).))))..)).)))..)))**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V110
male body

V041
embryo

V056
head

V049
head

.....CCAGCGAGGAGGAGAGCGTGGC.......................................................................................................................................

14.00

.....CCAGCGAGGAGGAGAGCGTGG........................................................................................................................................

11.67

......................................................................GAGGACAGGGTATGGTCACCGG......................................................................

11.00

.....CCAGCGAGGAGGAGAGCGTGGCC......................................................................................................................................

4.00

.....CCAGCGAGGAGGAGAGCGTG.........................................................................................................................................

3.33

......................................................................GAGGACAGGGTATGGTCACCGGTGACC.................................................................

3.00

......................................................................GAGGACAGGGTATGGTCACCGGTG....................................................................

2.00

......CAGCGAGGAGGAGAGCGTGG........................................................................................................................................

1.67

.....CCAGCGAGGAGGAGAGCGTGGCCAC....................................................................................................................................

1.33

......................................................................GAGGACAGGGTATGGTCACCGGTGAT..................................................................

1.00

......................................................................GAGGACAGGGTATGGTCACCGGTGAC..................................................................

1.00

......................................................................GAGGACGGGGTATGGTCACCGG......................................................................

1.00

......................................................................GAGGACAGGGTATGGTCACCGGT.....................................................................

1.00

......................................................................GAGGACAGGGTATAGTCACCGG......................................................................

1.00

.....CCAGCGAGGAGGAGAGCGT..........................................................................................................................................

1.00

.......................................................................AGGACAGGGTATGGTCACCGGTG....................................................................

1.00

......................................................................GAGGACAGGGTATGGTCACCGGTT....................................................................

1.00

......................................................................GAGGACAGGGTATGGTCACCGGTGA...................................................................

1.00

......................................................................GAGGACAGGGTATGGTCACC........................................................................

1.00

......................................................................GAGGACAGGGTATGGTCACCG.......................................................................

1.00

.....CCAGCGAGGAGGAGAGCG...........................................................................................................................................

0.67

.....CCAGCGAGGAGGAGAGCGTGGCCA.....................................................................................................................................

0.67

......CAGCGAGGAGGAGAGCGTGGC.......................................................................................................................................

0.67

.....CCAGCGAGGAGGAGAGCGTGGCCACGG..................................................................................................................................

0.67

.............................................................................................................................................TGGGACGAGTCGCTGGTCAGC

0.55

.................................................................................AGGGTCATCGGTGACGTCGCC............................................................

0.50

.............................................................................................GAACTCGCAAGGGGCGCAGCC................................................

0.50

......CAGCGAGGAGGAGAGCGTG.........................................................................................................................................

0.33

.....CCAGCGAGGAGGAGAGCGTGGCCTT....................................................................................................................................

0.33

.TCAACCAGCGAGGAGGAGAGC............................................................................................................................................

0.33

.........................................................GACTAGTGCAGAAGAGGACA.....................................................................................

0.33

...................................................................................................GCCAGTGGCACAGCCGGGTAG..........................................

0.33

.....CCAGCGAGGAGGAGAGCGTGGTG......................................................................................................................................

0.33

........................................................................................................TGGCGCAGCCTGGGAGGAGCGGCAG.................................

0.29

.................................................................................................ACGCCAGTGGCACAGCCGGGG............................................

0.25

............................................................GAGTGCAAAAGAGGACAG....................................................................................

0.20

.............................................................................................................................................TGGGACGAGTCGCTGGTCAG.

0.18

.............................................................................................................................................TTGGACGAGTCGCTGGTCAGC

0.18

...CTCCAGCGAGGAGGAGAGCGTG.........................................................................................................................................

0.17

..................................................................................................................TGGGAGGAGCGGCAGGAGA.............................

0.13

............................................................................................................................GGCAGGAGGAGGAGCGGTGG..................

0.13

..............AGGAGAGCGTGGCCACGGATGGCTC...........................................................................................................................

0.11

........................................................................................................TGGCGCAGCCTGGGAGGAGCGC....................................

0.11

........................................................................................................TTGCGCAGCCTGGGAGGAG.......................................

0.11

........................................................................................................TGGCGCAGCCTGGGAGGAGCGG....................................

0.11

........................................................................................................TGGCGCAGCCTGGGAGGAGC......................................

0.11

........................................................................................................TGGCGCAGCCTGGGGGGAGCGT....................................

0.11

...........................................................................................................CGCAGCCCGGGCGGAGCGGCC..................................

0.10

.......................................................................................................................................GAGCGGTGGGACGAGTCGCTGGT....

0.09

........................................................................................................................................AGCGGTGGGACGAGTCGCTGGT....

0.09

.............................................................................................................................................TGGGAGGAGTCGCTGGTCAGC

0.09

................................................................................................CACGCCAGTGGCACAGCCGG..............................................

0.09

.............................................................................................................................................TCGGACGAGTCGCTGGTCAGC

0.09

................................................................................................................................CGAGGAGGAGCGGTGGCACCA.............

0.07

..................................................................................................CGCCAGTGGCACAGCCGG..............................................

0.05

....................................................................TGGAGGACAGTGTATGGT............................................................................

0.05

............................................................GAGTGCAGAAGAGGACAGG...................................................................................

0.05

............................................................GAGTGAAGAAGAGGACAGTG..................................................................................

0.05

....................................................................................................................................GATGAGGGGTGTGACGAGT...........

0.05

CAGTTGGTCGCTCCTCCTCTCGCACCGGTGCCTACCGAGCACCAGCGGTCCATCGACCTGGTCACTTTTTCTCCTGTCCCATACCAGTGGCCACTGGAGCGGTCACCGCGTCGGACCCTCCTCGCCGTCCTCCTCCTCGCCACCCTGCTCAGCGACCAGTCG ************************************************....(((..(((.((.....((((.((.(((......)))..)).))))..)).)))..)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V041 embryo	V049 head
.....................................................CGACCTGGTCACTTTTTCTCCTGTCCC..................................................................................	27	0	1	26.00	26	18	8	0	0
......................................................GACCTGGTCACTTTTTCTCCTGTCCC..................................................................................	26	0	1	14.00	14	13	1	0	0
........................................................CCTGGTCACTTTTTCTCCTGTCCC..................................................................................	24	0	1	7.00	7	5	2	0	0
.......................................................ACCTGGTCACTTTTTCTCCTGTCCC..................................................................................	25	0	1	3.00	3	3	0	0	0
................................................................................................................................CCTCCTCCTCGCCACCCTGCTCA...........	23	0	8	1.63	13	4	9	0	0
..............................................................................................................................GTCCTCCTCCTCGCCACCCTGCTCA...........	25	0	8	1.50	12	9	3	0	0
.............................................................................................................................CGTCCTCCTCCTCGCCACCCTGCTCA...........	26	0	8	1.25	10	7	3	0	0
...............................................................................................GGAGCGGTCACCGCGTCGGACCCT...........................................	24	0	1	1.00	1	1	0	0	0
..................................................................................ACCAGTGGCCACTGGAGCGG............................................................	20	0	1	1.00	1	1	0	0	0
.........................................................CTGGTCACTTTTTCTCCTGTCCC..................................................................................	23	0	1	1.00	1	1	0	0	0
.....................................................CGACCTGGTCACTTTTTCTCCTGTCGC..................................................................................	27	1	1	1.00	1	0	1	0	0
.....................................................CGACCTGGTCACTTTTTCTCCTGTCC...................................................................................	26	0	1	1.00	1	1	0	0	0
......................................................GACCTGGTCACTTTGTCTCCTGTCCC..................................................................................	26	1	1	1.00	1	1	0	0	0
.......................................................ACCTGGTCACTTTTTCTCCTGTCC...................................................................................	24	0	1	1.00	1	1	0	0	0
......................................................................CTCCTGTCCCACACCAGTGGCCACT...................................................................	25	1	1	1.00	1	1	0	0	0
........................................................CCTGGTCACTTTTTCTCCTGTCGC..................................................................................	24	1	1	1.00	1	0	1	0	0
...............................................................................................................................TCCTCCTCCTCGCCACCCTGCTCA...........	24	0	8	0.88	7	2	4	1	0
........CGCTCCTCCTCTCGCACCGGTGCCT.................................................................................................................................	25	0	3	0.67	2	2	0	0	0
.........................................................................................................CCGCGTCGGACCCTCCTCGCCGTCCT...............................	26	0	7	0.43	3	2	1	0	0
.................................................................................................................................CTCCTCCTCGCCACCCTGCTCA...........	22	0	8	0.38	3	1	2	0	0
...............................................................................................................................CCCTCCTCCTCGCCACCCTGCTCA...........	24	1	8	0.38	3	0	3	0	0
..............................................................................................................................TTCCTCCTCCTCGCCACCCTGCTCA...........	25	1	8	0.38	3	2	1	0	0
.............................................................................................................................CGTCCTCCTCCTCGCCACCCTGCTC............	25	0	8	0.38	3	3	0	0	0
..........................................................................................................................CGCCGTCCTCCTCCTCGCCACCCTGCTCA...........	29	0	8	0.38	3	3	0	0	0
....TGGTCGCTCCTCCTCTCGCACCGGT.....................................................................................................................................	25	0	3	0.33	1	0	1	0	0
.....GGTCGCTCCTCCTCTCGCACCGGTGCCT.................................................................................................................................	28	0	3	0.33	1	1	0	0	0
.........GCTCCTCCTCTCGCACCGGTGCCT.................................................................................................................................	24	0	3	0.33	1	1	0	0	0
........CGCTCCTCCTCTCGCACCGGT.....................................................................................................................................	21	0	3	0.33	1	0	1	0	0
CAGTTGGTCGCTCCTCCTCTCGCACC........................................................................................................................................	26	0	3	0.33	1	1	0	0	0
..........................................................................................................................CGCCGTCCTCCTCCTCGCCACCC.................	23	0	8	0.25	2	2	0	0	0
.......................................................................................................................CCTCGCCGTCCTCCTCCTCGCCACCCT................	27	0	8	0.25	2	1	1	0	0
......................................................................................................................................CCTCGCCACCCTGCTCAGCGACCAGT..	26	0	10	0.20	2	2	0	0	0
...................................................................................................................................CCTCCTCGCCACCCTGCTCAGCGACCAGT..	29	0	10	0.20	2	1	1	0	0
.....................................................CGACCTGGTCGCTTTTTCTCCTGTCCC..................................................................................	27	1	5	0.20	1	0	1	0	0
........................................................CCTGGTCGCTTTTTCTCCTGTCCC..................................................................................	24	1	6	0.17	1	1	0	0	0
...............................................................................................................CGGACCCTCCTCGCCGTCC................................	19	0	7	0.14	1	0	1	0	0
........................CCGGTGCCTACCGAGCACCAGCGGTT................................................................................................................	26	1	7	0.14	1	1	0	0	0
...............................................................................................................CGGACCCTCCTCGCCGTCCTC..............................	21	0	7	0.14	1	0	1	0	0
...............................................................................................................CAGACCCTCCTCGCCGTCCTCCTCCT.........................	26	1	7	0.14	1	0	1	0	0
..........................GGTGCCTACCGAGCACCAGCGGTCCAT.............................................................................................................	27	0	7	0.14	1	1	0	0	0
........................ACGGTGCCTACCGAGCACCAGCGGT.................................................................................................................	25	1	7	0.14	1	1	0	0	0
...............................................................................................................CGGACCCTCCTCGCCGTCCTCCTCCT.........................	26	0	7	0.14	1	0	1	0	0
................................................................................................................GGACCCTCCTCGCCGTCCTCCTCCT.........................	25	0	7	0.14	1	1	0	0	0
...............................................................................................................................TCCTCCTCCTCGCCACCCTGCCCA...........	24	1	8	0.13	1	0	1	0	0
............................................................................................................................CCGTCCTCCTCCTCGCCACCCTGCTCA...........	27	0	8	0.13	1	1	0	0	0
...................................................................................................................CCCTCCTCGCCGTCCTCC.............................	18	0	8	0.13	1	0	1	0	0
............................................................................................................................CCGTCCTCCTCCTCGCCACCCTGCTGA...........	27	1	8	0.13	1	0	1	0	0
..................................................................................................................................TCCTCCTCGCCACCCTGCTCA...........	21	0	8	0.13	1	1	0	0	0
.............................................................................................................................CGTCCTCCTCCTCGCCACC..................	19	0	8	0.13	1	0	1	0	0
................................................................................................................................CCTCCTCCTCGCCACCCTGC..............	20	0	8	0.13	1	0	1	0	0
.............................................................................................................................CGTCCTCCTCCTCGCCACCCT................	21	0	8	0.13	1	0	1	0	0
..........................................................................................................................CGCCGTCCTCCTCCTCGTCAC...................	21	1	8	0.13	1	0	1	0	0
.........................................................................................................................TCGCCGTCCTCCTCCTCGCCACCCTGCT.............	28	0	8	0.13	1	1	0	0	0
.............................................................................................................................CGTCCTCCTCCTCGCCACCCTGCTTA...........	26	1	8	0.13	1	0	1	0	0
...........................................................................................................................GCCGTCCTCCTCCTCGCCACCCTGCTCA...........	28	0	8	0.13	1	1	0	0	0
............................................................................................................................CCGTCCTCCTCCTCGCCACCCT................	22	0	8	0.13	1	0	1	0	0
..............................................................................................................................CTCCTCCTCCTCGCCACCCTGCTCA...........	25	1	8	0.13	1	1	0	0	0
..............................................................................................................................GTCCTCCTCCTCGCCACCCTGCTC............	24	0	8	0.13	1	1	0	0	0
................................................................................................................................CCTCCTCCTCGCCACCCTCA..............	20	2	9	0.11	1	0	1	0	0
........................................................................................................ACCGCGGGGGACCCTCCGCGC.....................................	21	3	9	0.11	1	0	0	0	1
......................................................................................................................................CCTCGCCAACCTGCTCAGCTA.......	21	2	10	0.10	1	0	1	0	0
....................................................................................................................................CTCCTCGCCACCCTGCTCAGCGACCAGT..	28	0	10	0.10	1	1	0	0	0
...................................................................................................................................CCTCCTCGCCACCCTGCTCA...........	20	0	10	0.10	1	0	1	0	0
......................................................................................................................................CCTCGCCACCCTGCTCAGCGACC.....	23	0	10	0.10	1	1	0	0	0
............................................................................................................................................CACCCTGCTCAGCGACCAGTC.	21	0	11	0.09	1	0	1	0	0
...........................................................................................................................................CCACCCTGCTCAGCGACCAGT..	21	0	11	0.09	1	0	1	0	0

CAGTTGGTCGCTCCTCCTCTCGCACCGGTGCCTACCGAGCACCAGCGGTCCATCGACCTGGTCACTTTTTCTCCTGTCCCATACCAGTGGCCACTGGAGCGGTCACCGCGTCGGACCCTCCTCGCCGTCCTCCTCCTCGCCACCCTGCTCAGCGACCAGTCG
**************************************************....(((..(((.((.....((((.((.(((......)))..)).))))..)).)))..)))**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V041
embryo

V049
head

.....................................................CGACCTGGTCACTTTTTCTCCTGTCCC..................................................................................

26.00

......................................................GACCTGGTCACTTTTTCTCCTGTCCC..................................................................................

14.00

........................................................CCTGGTCACTTTTTCTCCTGTCCC..................................................................................

7.00

.......................................................ACCTGGTCACTTTTTCTCCTGTCCC..................................................................................

3.00

................................................................................................................................CCTCCTCCTCGCCACCCTGCTCA...........

1.63

..............................................................................................................................GTCCTCCTCCTCGCCACCCTGCTCA...........

1.50

.............................................................................................................................CGTCCTCCTCCTCGCCACCCTGCTCA...........

1.25

...............................................................................................GGAGCGGTCACCGCGTCGGACCCT...........................................

1.00

..................................................................................ACCAGTGGCCACTGGAGCGG............................................................

1.00

.........................................................CTGGTCACTTTTTCTCCTGTCCC..................................................................................

1.00

.....................................................CGACCTGGTCACTTTTTCTCCTGTCGC..................................................................................

1.00

.....................................................CGACCTGGTCACTTTTTCTCCTGTCC...................................................................................

1.00

......................................................GACCTGGTCACTTTGTCTCCTGTCCC..................................................................................

1.00

.......................................................ACCTGGTCACTTTTTCTCCTGTCC...................................................................................

1.00

......................................................................CTCCTGTCCCACACCAGTGGCCACT...................................................................

1.00

........................................................CCTGGTCACTTTTTCTCCTGTCGC..................................................................................

1.00

...............................................................................................................................TCCTCCTCCTCGCCACCCTGCTCA...........

0.88

........CGCTCCTCCTCTCGCACCGGTGCCT.................................................................................................................................

0.67

.........................................................................................................CCGCGTCGGACCCTCCTCGCCGTCCT...............................

0.43

.................................................................................................................................CTCCTCCTCGCCACCCTGCTCA...........

0.38

...............................................................................................................................CCCTCCTCCTCGCCACCCTGCTCA...........

0.38

..............................................................................................................................TTCCTCCTCCTCGCCACCCTGCTCA...........

0.38

.............................................................................................................................CGTCCTCCTCCTCGCCACCCTGCTC............

0.38

..........................................................................................................................CGCCGTCCTCCTCCTCGCCACCCTGCTCA...........

0.38

....TGGTCGCTCCTCCTCTCGCACCGGT.....................................................................................................................................

0.33

.....GGTCGCTCCTCCTCTCGCACCGGTGCCT.................................................................................................................................

0.33

.........GCTCCTCCTCTCGCACCGGTGCCT.................................................................................................................................

0.33

........CGCTCCTCCTCTCGCACCGGT.....................................................................................................................................

0.33

CAGTTGGTCGCTCCTCCTCTCGCACC........................................................................................................................................

0.33

..........................................................................................................................CGCCGTCCTCCTCCTCGCCACCC.................

0.25

.......................................................................................................................CCTCGCCGTCCTCCTCCTCGCCACCCT................

0.25

......................................................................................................................................CCTCGCCACCCTGCTCAGCGACCAGT..

0.20

...................................................................................................................................CCTCCTCGCCACCCTGCTCAGCGACCAGT..

0.20

.....................................................CGACCTGGTCGCTTTTTCTCCTGTCCC..................................................................................

0.20

........................................................CCTGGTCGCTTTTTCTCCTGTCCC..................................................................................

0.17

...............................................................................................................CGGACCCTCCTCGCCGTCC................................

0.14

........................CCGGTGCCTACCGAGCACCAGCGGTT................................................................................................................

0.14

...............................................................................................................CGGACCCTCCTCGCCGTCCTC..............................

0.14

...............................................................................................................CAGACCCTCCTCGCCGTCCTCCTCCT.........................

0.14

..........................GGTGCCTACCGAGCACCAGCGGTCCAT.............................................................................................................

0.14

........................ACGGTGCCTACCGAGCACCAGCGGT.................................................................................................................

0.14

...............................................................................................................CGGACCCTCCTCGCCGTCCTCCTCCT.........................

0.14

................................................................................................................GGACCCTCCTCGCCGTCCTCCTCCT.........................

0.14

...............................................................................................................................TCCTCCTCCTCGCCACCCTGCCCA...........

0.13

............................................................................................................................CCGTCCTCCTCCTCGCCACCCTGCTCA...........

0.13

...................................................................................................................CCCTCCTCGCCGTCCTCC.............................

0.13

............................................................................................................................CCGTCCTCCTCCTCGCCACCCTGCTGA...........

0.13

..................................................................................................................................TCCTCCTCGCCACCCTGCTCA...........

0.13

.............................................................................................................................CGTCCTCCTCCTCGCCACC..................

0.13

................................................................................................................................CCTCCTCCTCGCCACCCTGC..............

0.13

.............................................................................................................................CGTCCTCCTCCTCGCCACCCT................

0.13

..........................................................................................................................CGCCGTCCTCCTCCTCGTCAC...................

0.13

.........................................................................................................................TCGCCGTCCTCCTCCTCGCCACCCTGCT.............

0.13

.............................................................................................................................CGTCCTCCTCCTCGCCACCCTGCTTA...........

0.13

...........................................................................................................................GCCGTCCTCCTCCTCGCCACCCTGCTCA...........

0.13

............................................................................................................................CCGTCCTCCTCCTCGCCACCCT................

0.13

..............................................................................................................................CTCCTCCTCCTCGCCACCCTGCTCA...........

0.13

..............................................................................................................................GTCCTCCTCCTCGCCACCCTGCTC............

0.13

................................................................................................................................CCTCCTCCTCGCCACCCTCA..............

0.11

........................................................................................................ACCGCGGGGGACCCTCCGCGC.....................................

0.11

......................................................................................................................................CCTCGCCAACCTGCTCAGCTA.......

0.10

....................................................................................................................................CTCCTCGCCACCCTGCTCAGCGACCAGT..

0.10

...................................................................................................................................CCTCCTCGCCACCCTGCTCA...........

0.10

......................................................................................................................................CCTCGCCACCCTGCTCAGCGACC.....

0.10

............................................................................................................................................CACCCTGCTCAGCGACCAGTC.

0.09

...........................................................................................................................................CCACCCTGCTCAGCGACCAGT..

0.09

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6541:2218560-2218721 +	dmo_2230	GTCAACCAGCGAGGAGGAGAGCGTGGCCACGGATGGCTCG--TGGTCGCCAGGTAGCTGGACCAGTGAAAAAGAGGACAGGGTATGGTCACCGGTGACCTCGCCAGTGG-------CGCAGCCTGGGAGGAGCGGCAGGA------GGAGGAGCGGTGGGACGAGTCGCTGGTCAGC
droGri2	scaffold_7719:137-289 +		GTCAGAGGACGAAGAGGAGTG-GCGGTCATCGACGACTCCGGCG----------ATCTCGGAC---GATGAGGAGGCGATGCCGTGGCCACAAGAGACGCCGGAGCCGGAGGTGATCACGATCTCGGACGAGGAGGAGGACACTGGCGAGGAGCGGTG----------GTCATCACC

Species

Coordinate

Alignment

droMoj3

scaffold_6541:2218560-2218721 +

dmo_2230

GTCAACCAGCGAGGAGGAGAGCGTGGCCACGGATGGCTCG--TGGTCGCCAGGTAGCTGGACCAGTGAAAAAGAGGACAGGGTATGGTCACCGGTGACCTCGCCAGTGG-------CGCAGCCTGGGAGGAGCGGCAGGA------GGAGGAGCGGTGGGACGAGTCGCTGGTCAGC

droGri2

scaffold_7719:137-289 +

GTCAGAGGACGAAGAGGAGTG-GCGGTCATCGACGACTCCGGCG----------ATCTCGGAC---GATGAGGAGGCGATGCCGTGGCCACAAGAGACGCCGGAGCCGGAGGTGATCACGATCTCGGACGAGGAGGAGGACACTGGCGAGGAGCGGTG----------GTCATCACC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GTCAACCAGCGAGGAGGAGAGCGTGGCCACGGATGGCTCG--TGGTCGCCAGGTAGCTGGACCAGTGAAAAAGAGGACAGGGTATGGTCACCGGTGACCTCGCCAGTGG-------CGCAGCCTGGGAGGAGCGGCAGGA------GGAGGAGCGGTGGGACGAGTCGCTGGTCAGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....CCAGCGAGGAGGAGAGCGTGGC......................................................................................................................................................	22	3	14.00	42	28	3	0	0	11	0
.....CCAGCGAGGAGGAGAGCGTGG.......................................................................................................................................................	21	3	11.67	35	32	3	0	0	0	0
........................................................................GAGGACAGGGTATGGTCACCGG...................................................................................	22	1	11.00	11	9	0	0	0	1	1
.....CCAGCGAGGAGGAGAGCGTGGCC.....................................................................................................................................................	23	3	4.00	12	7	0	0	0	5	0
.....CCAGCGAGGAGGAGAGCGTG........................................................................................................................................................	20	3	3.33	10	9	0	0	0	1	0
........................................................................GAGGACAGGGTATGGTCACCGGTGACC..............................................................................	27	1	3.00	3	3	0	0	0	0	0
........................................................................GAGGACAGGGTATGGTCACCGGTG.................................................................................	24	1	2.00	2	2	0	0	0	0	0
......CAGCGAGGAGGAGAGCGTGG.......................................................................................................................................................	20	3	1.67	5	5	0	0	0	0	0
.....CCAGCGAGGAGGAGAGCGTGGCCAC...................................................................................................................................................	25	3	1.33	4	4	0	0	0	0	0
........................................................................GAGGACAGGGTATGGTCACCGGTGAT...............................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................GAGGACAGGGTATGGTCACCGGTGAC...............................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................GAGGACAGGGTATGGTCACCGGT..................................................................................	23	1	1.00	1	0	0	0	0	1	0
.....CCAGCGAGGAGGAGAGCGT.........................................................................................................................................................	19	3	1.00	3	2	0	0	0	1	0
.........................................................................AGGACAGGGTATGGTCACCGGTG.................................................................................	23	1	1.00	1	1	0	0	0	0	0
........................................................................GAGGACAGGGTATGGTCACCGGTT.................................................................................	24	1	1.00	1	1	0	0	0	0	0
........................................................................GAGGACAGGGTATGGTCACCGGTGA................................................................................	25	1	1.00	1	1	0	0	0	0	0
........................................................................GAGGACAGGGTATGGTCACC.....................................................................................	20	1	1.00	1	1	0	0	0	0	0
........................................................................GAGGACAGGGTATGGTCACCG....................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....CCAGCGAGGAGGAGAGCG..........................................................................................................................................................	18	3	0.67	2	2	0	0	0	0	0
.....CCAGCGAGGAGGAGAGCGTGGCCA....................................................................................................................................................	24	3	0.67	2	2	0	0	0	0	0
......CAGCGAGGAGGAGAGCGTGGC......................................................................................................................................................	21	3	0.67	2	2	0	0	0	0	0
.....CCAGCGAGGAGGAGAGCGTGGCCACGG.................................................................................................................................................	27	3	0.67	2	1	0	0	0	0	1
............................................................................................................................................................TGGGACGAGTCGCTGGTCAGC	21	11	0.55	6	0	1	0	0	4	1
......CAGCGAGGAGGAGAGCGTG........................................................................................................................................................	19	3	0.33	1	1	0	0	0	0	0
.....CCAGCGAGGAGGAGAGCGTGGCCTT...................................................................................................................................................	25	3	0.33	1	1	0	0	0	0	0
.TCAACCAGCGAGGAGGAGAGC...........................................................................................................................................................	21	3	0.33	1	0	0	0	0	1	0
.....CCAGCGAGGAGGAGAGCGTGGTG.....................................................................................................................................................	23	3	0.33	1	1	0	0	0	0	0
..........................................................................................................TGG-------CGCAGCCTGGGAGGAGCGGCAG.......................................	25	7	0.29	2	2	0	0	0	0	0
............................................................................................................................................................TGGGACGAGTCGCTGGTCAG.	20	11	0.18	2	2	0	0	0	0	0
...........................................................................................................................TGGGAGGAGCGGCAGGA------GA.............................	19	8	0.13	1	1	0	0	0	0	0
.....................................................................................................................................GGCAGGA------GGAGGAGCGGTGG..................	20	8	0.13	1	0	0	0	0	0	1
..............AGGAGAGCGTGGCCACGGATGGCTC..........................................................................................................................................	25	9	0.11	1	1	0	0	0	0	0
..........................................................................................................TGG-------CGCAGCCTGGGAGGAGCGC..........................................	22	9	0.11	1	1	0	0	0	0	0
..........................................................................................................TGG-------CGCAGCCTGGGAGGAGCGG..........................................	22	9	0.11	1	1	0	0	0	0	0
..........................................................................................................TGG-------CGCAGCCTGGGAGGAGC............................................	20	9	0.11	1	0	1	0	0	0	0
......................................................................................................................................................GAGCGGTGGGACGAGTCGCTGGT....	23	11	0.09	1	1	0	0	0	0	0
.......................................................................................................................................................AGCGGTGGGACGAGTCGCTGGT....	22	11	0.09	1	1	0	0	0	0	0

droGri2

GTCAGAGGACGAAGAGGAGTG-GCGGTCATCGACGACTCCGGCG----------ATCTCGGAC---GATGAGGAGGCGATGCCGTGGCCACAAGAGACGCCGGAGCCGGAGGTGATCACGATCTCGGACGAGGAGGAGGACACTGGCGAGGAGCGGTG----------GTCATCACC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.......................................................................................CCACAAGAGACGCCGGAGCCGGAG..................................................................	24	20	0.05	1	1	0
..................................................................................CGTGGCCACAAGAGACGCCGGAGC.......................................................................	24	20	0.05	1	1	0

dmo_2230

scaffold_6541:2218610-2218671 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads