ID:

dmo_2220

 Coordinate:

scaffold_6541:1492969-1493119 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.0 -6.1 -6.0

Flybase annnotation

CDS [Dmoj\GI14170-cds]; exon [dmoj_GLEANR_14382:13]; intron [Dmoj\GI14170-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
(TCCG)nSimple_repeatSimple_repeat+
Helitron1_DmojRCHelitron+
mature
  1. scaffold_349:243-263 -
  2. scaffold_2629:904-924 -
  3. scaffold_5519:244-264 -
  4. scaffold_5542:879-899 -
  5. scaffold_6333:42741-42761 -
  6. scaffold_6451:2931-2951 -
  7. scaffold_6473:15464873-15464893 -
  8. scaffold_6496:25700860-25700880 -
  9. scaffold_6496:26578595-26578615 -
  10. scaffold_6498:3067671-3067691 -
  11. scaffold_6498:3175719-3175739 -
  12. scaffold_6500:6931760-6931780 -
  13. scaffold_6500:29686737-29686757 -
  14. scaffold_6541:342608-342628 -
  15. scaffold_6541:424362-424382 -
  16. dmo_2220  scaffold_6541:1493091-1493111 -
  17. scaffold_6541:1729976-1729996 -
  18. scaffold_6541:1989561-1989581 -
  19. scaffold_6541:2263564-2263584 -
  20. scaffold_6656:3931-3951 -
  21. scaffold_37:473-493 +
  22. scaffold_3747:1841-1861 +
  23. scaffold_5019:917-937 +
  24. scaffold_5983:907-927 +
  25. scaffold_6083:2730-2750 +
  26. scaffold_6341:60969-60989 +
  27. scaffold_6341:67601-67621 +
  28. scaffold_6387:18905-18925 +
  29. scaffold_6473:12951-12971 +
  30. scaffold_6498:2105482-2105502 +
  31. scaffold_6498:2586287-2586307 +
  32. scaffold_6498:2929773-2929793 +
  33. scaffold_6540:253512-253532 +
  34. scaffold_6540:525648-525668 +
  35. scaffold_6540:653404-653424 +
  36. scaffold_6540:1028908-1028928 +
  37. scaffold_6540:1426308-1426328 +
  38. scaffold_6680:23011414-23011434 +
  39. scaffold_6680:23045775-23045795 +
  40. scaffold_6680:24066206-24066226 +
  41. scaffold_74:1701-1721 +
  42. scaffold_1753:2268-2288 +
  43. scaffold_3773:1645-1665 +
  44. scaffold_5359:1711-1731 +
  45. scaffold_5692:1467-1487 +
  46. scaffold_6318:47783-47803 +
  47. scaffold_6360:38800-38820 +
  48. scaffold_6373:4635-4655 +
  49. scaffold_6373:20918-20938 +
  50. scaffold_6373:30189-30209 +
  51. scaffold_6393:34916-34936 +
  52. scaffold_6405:53698-53718 +
  53. scaffold_6496:26755671-26755691 +
  54. scaffold_6500:2610189-2610209 +
  55. scaffold_6500:12598557-12598577 +
  56. scaffold_6500:32287624-32287644 +
  57. scaffold_6540:326214-326234 +
  58. scaffold_6540:1004482-1004502 +
  59. scaffold_6540:25332856-25332876 +
  60. scaffold_6541:2407398-2407418 +
star
  1. scaffold_470:230-249 -
  2. scaffold_535:2678-2697 -
  3. scaffold_2379:119-138 -
  4. scaffold_3090:58-77 -
  5. scaffold_3475:332-351 -
  6. scaffold_5810:1684-1703 -
  7. scaffold_6403:4809-4828 -
  8. scaffold_6411:42437-42456 -
  9. scaffold_6456:7209-7228 -
  10. scaffold_6473:13949700-13949719 -
  11. scaffold_6485:40826-40845 -
  12. scaffold_6496:26807437-26807456 -
  13. scaffold_6496:26810710-26810729 -
  14. scaffold_6498:1932343-1932362 -
  15. scaffold_6500:1771547-1771566 -
  16. scaffold_6500:25434588-25434607 -
  17. scaffold_6500:31404392-31404411 -
  18. scaffold_6500:32178433-32178452 -
  19. scaffold_6680:8476192-8476211 -
  20. scaffold_6680:24481454-24481473 -
  21. scaffold_475:227-246 -
  22. scaffold_710:1061-1080 -
  23. scaffold_1693:2320-2339 -
  24. scaffold_3605:3223-3242 -
  25. scaffold_5112:334-353 -
  26. scaffold_5542:848-867 -
  27. scaffold_5732:6195-6214 -
  28. scaffold_6175:126-145 -
  29. scaffold_6287:5895-5914 -
  30. scaffold_6333:42710-42729 -
  31. scaffold_6473:8814720-8814739 -
  32. scaffold_6496:17598609-17598628 -
  33. scaffold_6498:2133795-2133814 -
  34. scaffold_6498:3125481-3125500 -
  35. scaffold_6500:31474509-31474528 -
  36. scaffold_6501:530174-530193 -
  37. scaffold_6540:18544784-18544803 -
  38. scaffold_6541:424331-424350 -
  39. dmo_2220  scaffold_6541:1493060-1493079 -
  40. scaffold_6689:2640-2659 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACACGAGTATGTGTTCCAAATTTCAAGTCTCTAGCTTCAAAAGCGCCGAAATAGATTGCGTTCATACGGACAGACGGACAGACGGACGGACGGACAGACGGACAGACGGACATTGCACAAAACCAATGTACTGATAATATATTATTAAATAAATATTTAATTAAAATTCATACATTTGAATATTTTACTTAATATTATTAGGTAGTTGAACTAAATTCTGAGTTGCTACAGAACATGATGTCTTCACTGTT
**********************************************************((((....((......((......))......))....))))..........********************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body
..............................................................................................................................................................................................................................TTGCTACAGAACATGATGTCTTCACTGT. 28 0 1 2.00 2 2 0 0
.............................................................................................................................................................................................................................TTTGCTACAGAACATGATGTCTTCACTGT. 29 1 1 1.00 1 1 0 0
......................................................................................................................................................................................TTTCACTTAAAATTATTTGGTAG.............................................. 23 3 2 0.50 1 0 1 0
.................................................................................................................................................................................................................................CTACCGATCCTGATGTCTTC...... 20 3 2 0.50 1 0 1 0
..........................................................CGTTCATACGGACAGACGGAC............................................................................................................................................................................ 21 0 20 0.35 7 7 0 0
.......................CAAGTCTCTAGCTTCAAAAGCGCC............................................................................................................................................................................................................ 24 0 7 0.14 1 1 0 0
.....................TTCAAGTCTCTAGCTTCAAAAGCGCC............................................................................................................................................................................................................ 26 0 7 0.14 1 0 1 0
.........................AGTCTCTAGCTTCAAAAGCGCC............................................................................................................................................................................................................ 22 0 8 0.13 1 0 1 0
....................................TCAAAAGCGCCGAAATAGA.................................................................................................................................................................................................... 19 0 9 0.11 1 1 0 0
............................................................TTCATACGGACAGACGGACAG.......................................................................................................................................................................... 21 0 20 0.10 2 0 0 2
.................................................................................................................................................................................................................AATAAATTCTGAGTTGGT........................ 18 2 16 0.06 1 0 0 1
...CGAGTATGTGTTCCAAATTTCA.................................................................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0
..........................................................................................CGGACAGACGGACAGACGGA............................................................................................................................................. 20 0 20 0.05 1 0 0 1
...................................................................................................GGACAGACGGACATTGCACAAAACCAA............................................................................................................................. 27 0 20 0.05 1 1 0 0
...........................................................GTTCATACGGACAGACGGA............................................................................................................................................................................. 19 0 20 0.05 1 1 0 0

Anti-sense strand reads

TGTGCTCATACACAAGGTTTAAAGTTCAGAGATCGAAGTTTTCGCGGCTTTATCTAACGCAAGTATGCCTGTCTGCCTGTCTGCCTGCCTGCCTGTCTGCCTGTCTGCCTGTAACGTGTTTTGGTTACATGACTATTATATAATAATTTATTTATAAATTAATTTTAAGTATGTAAACTTATAAAATGAATTATAATAATCCATCAACTTGATTTAAGACTCAACGATGTCTTGTACTACAGAAGTGACAA
*********************************************************************************************************************************************((((....((......((......))......))....))))..........********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
 V041
embryo
 V110
male body		 V049
head
.......ATACACAAGGTTTAAAGTTCA............................................................................................................................................................................................................................... 21 0 20 0.55 11 0 11 0 0 0
........................................................................................................CTGCCTGTAACGTGTTTTGGTTACAT......................................................................................................................... 26 0 4 0.50 2 2 0 0 0 0
.......................................................................................................TCTGCCTGTAACGTGTTTTGGTTACAT......................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0
...............GGTTTAAAGTTCAGAGATCGAAGTT................................................................................................................................................................................................................... 25 0 20 0.25 5 0 0 4 1 0
................GTTTAAAGTTCAGAGATCGAAGTT................................................................................................................................................................................................................... 24 0 20 0.15 3 0 3 0 0 0
.................................................................................................................................................................................CTTAAAAAATCAACTATAATAAT................................................... 23 3 9 0.11 1 0 0 0 0 1
........................................................................................................CAGCCTGTAACGTGTTTTGGTTACAT......................................................................................................................... 26 1 10 0.10 1 1 0 0 0 0
.........................................................................................................TGCCTGTAACGTGTTTTGGTT............................................................................................................................. 21 0 20 0.10 2 0 0 0 2 0
........................................................................................................CTGCCTGTAACGTGTTTTGGTTTCGT......................................................................................................................... 26 2 17 0.06 1 1 0 0 0 0
....................................................................................CTGCCTGCCTGTCTGCCTGT................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
..............................................................................GTCTGCCTGCCTGCCTGTCT......................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 1
.............................................................AGTATGCCTGTCTGCCTGTCTGC....................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0
.........................................................CGCAAGTATGCCTGTCTGCC.............................................................................................................................................................................. 20 0 20 0.05 1 0 1 0 0 0
........TACACAAGGTTTAAAGTTCAGAGATC......................................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.....TCATACACAAGGTTTAAAGTTCAGA............................................................................................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0
..............................................................GTATGCCTGTCTGCCTGTCTGC....................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6541:1492919-1493169 - dmo_2220 ACACGAGTATGTGTTCCAAATTTCAAGTCTCTAGCTTCAAAAG----------------CGCCGAAATAGATTGCG----TTCATACGGACA--------GACGGACAGACGGACGGACGGACAGACGGACAG----------------ACGGACATTGCACAA-------AACC--AATG-TACTGAT-------------------------AATATA-----------TT------------------------------ATT---A-------------------------AAT----------------AAA-TATT---TAATTAAAATT----C-------ATACATTTGAATATTT---------------------------TACTTAATATTATTAGGTAGTTG------------------A----AC------TA-AAT--------------TCTGAGTTGCTACAGAACA--TGATGTCT--------------------------------------TCAC-----------------T---------------------GTT
droVir3 scaffold_12723:471041-471282 - T-------------CCAAATTTTCAAGTCTCTATCTCTTATAGGTTTT-GAGATCCTTG---------------CG----TTCATACATACG--------GACAGACGGAC------------GAATGGACAG----------------ACGGACAGGGCTAGATTGACTCGGCT--ATTGGTGCTGATCAAGAATATATATAC-------------------------------------------------------------------GGAGATGTTTCCTTCTGCCTGTTACA-TA----------------CATTTGC---ATTTTGCACTAA-----------TA---------------------------CAATATACCCTTATACCCATTTTTAATGGGCT----------------------------TAGGGAATAA-AT--------------------------------------------------------------------------------ACTGA-TGTGATAG------------------------------AAC
droGri2 scaffold_14906:12327580-12327836 + AGACCAGTAGATTTTCCAAGTGTCAAGTCCCTTTCTCTACGGA----------------TGTAGAAAAAAAATTAG----TTCATATAGACG--------GACGGACGCACAGACG----AACAGACAGCATG----------------ACGGACATTTCACAA-------GACC--AATA---T----CA---------------GATTA--TAATAAG-----------TCA--GT-------------------------TTA---A-------------------------ATT----------------CAC-AAAT---TAATTAAAAAA----G-------CTAGCATAAGATATTT---------------------------------------------------ATTA--AAATATTC--TG----AGAAAATCTAT-GAATTCCAGAT------------------------------------------------------------------ACATAATCAT-----------------TATCAGTTATGTGTTTTCTGTGTCT
droWil2 scf2_1100000004521:959810-960022 - ACACGAGTCTACATACCAAATTTGATGGCTCTAGCTCTTACAGTCTCC-GAGATCTAGG---------------TG----TTCATACGGACA--------GACGGACAGACGGACGGACGGACAGACGGACGG----------------ACAGGTGCT--------------TCA--ATTTATGT----CAAT---TTATCAAACC--AA----------CCAACCAA---CC------------------------------GAA---A-------------------------TA-TATATGTTT-----------TTTATTT----------GAAAACAATAAAT---------------------------------------------------------------TT------------------GG----TTTGGGTATAG---------------------GATTGATAT-------------------------------------------------------------------------------------------------AGA
dp5 XR_group5:82846-83019 - TT------CTGGATACAAAATTTCGTGGCTCTAGCTCTTATAGTCTCT-GAGCACCATG---------------CG----CTCATAGCGACG--------GGCAGACGGACGGACGGACGGACGGACGGACGG----------------ACGGACGC------ACGGAC--------------TGCAAT------------TATTGGATA------------AAAGTAGTT------TTATACAGCAGG-----------------------------------------------------------------------------------------------AACG-------C----------------------TGTTATA------T-----------------------------------------------TT---CTT-A-------------------------------------------------------------------------------------AT-----------------A---------------------TCA
droPer2 scaffold_191:84571-84800 - GTG-------------------------CTCTAGCTCTTATAGTCTTT-GAGCATTAGGCGCTGAAGGGGA---CG-----TCAGACGGACA--------GACGGACGGACGGACAGACGGACAGACGGACAG----------------ACAGACATGGCTCAATCGACTCGGCT--ATTGATGCTGATCAAGAATATTGTTAG-------------------------------------------------------------------G-------------------------T----------------TGT-TTTA---GTATTATAACC----C--------TACATTTGTAT-------------------------------------------------------------------------------TT-------ACC--------------T--------------------TGCTGCT-AGCTTATAA---TTATTAGTGTTAATCTACAATTGTATTT-------------------A---------------------CTA
droAna3 scaffold_13260:1201645-1201897 + AGG-----GTGTGTGCAAAGTTTCAACTCGATAGCTTTAAAAC----------------TGAGAGACTAGTTTGCGTAGA----AACAGACA--------GACAGACAGACGGACA-------GGATAGACAG----------------ACGGATATT---AGATCA----CGGT--AATA---A----CG---------------GATTAGGTAATAAA-----------TTACAAATTGACTCTCCA-------TTT-----------------------------------------------------------TATT---TAGAAAAAGTT----T-------GTATATATG-------------------------------------------------GGAAATAG-----AAAAATG--C--TGTTATAGATAACACTG-GGAGGCCAGATTTTTTTCCGC---ACTTCAG-----------------------------------------------TACAACCAC-----------------T---------------------GTT
droBip1 scf7180000396670:59-262 - AAAGAAGGGTGTGTGCAAAGTTTCAAGACGATAGCTTCAAAAC----------------TGAGAGACAAGTTCGCGTAGA----AACAGAC--------------------------------AGACGGATAG----------------ACGGACATGCTCATATCAACTCAGGAGCAGGGACCGTAATCATT---ATAA----AT--------AATA----TATTTAAAA------------------------------------------------------------------T----------------TAC-TTTG---TAATGATTACT----C-----------------------------------------------------------------------------------------------------------AA-----------------------------------CG---------------ATTTTTAATTTTTTAAATCAAGACTAATAATT-------------------A---------------------TTT
droKik1 scf7180000301148:593-850 - AGA--AGACTATATGCAAAGTTTCATTCAGATAGCTTTAAAAC----------------TGAGGGACTAGTTTGCGTAGA----AACGGACA--------GACGGACGGACGGACG----GACAGACGGACAG----------------ACGGACATGGCTAGATCGACTCGGCT--GTTGATACTGATCAATAATATATATACTT--TA----------T--------------------------------------------AGGGTCGGAAAGGTCTCCTTCACTGCGTTGCA-AA----------------CTTCTGACT-----------------------------------G----------------------------------------------------AAATTA--TAATACCC--TG----CAAGGGTATAA-AAA-------------T-------G----------------------------------------------------------TGGTTTACCAAAGAACACTTCA---------------------ATT
droFic1 scf7180000449169:1431-1598 - T-------------------------------AGCTTTAAAAC----------------TGAGAGACTAGTTTAAAGAGA----AACAGACAGACG----GACAGACGGATAGACGGCC----AGACGGACAG----ACGGACAG----ACGTACAGACGTATTCTGATTCTACT--CGTGATGCTTATCAAGAATATATATAT-------------------------------------------------------------------GACGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTCATTTC------------CATCAGAA--------------------------------------------TCTTC-----------------A---------------------GCT
droEle1 scf7180000491265:24816-25053 - AA-----------------GTTTCATGCAGATAGCTTTAAAAC----------------TGAGAGACTAGTTTGCATATA----AACGGACG--------GACAGACGGACAGACGGACAGACGGACGGACAG----------------ACGGACATGGCTAGATCGACTCGCCT--AGTGATGCTGATCAAGAATATATATACTT--TA----------T--------------------------------------------AGGGTCGGAGATGTCTCCTTCACTGCGTTGCA-AA----------------CTTCTGACT-----------------------------------G----------------------------------------------------AAATTA--TAATACCCTCTG----CAAGGGTATAA-AAA-------------T-------G--------------ATTTCT--------------------------------------TTGT-----------------T---------------------ATT
droRho1 scf7180000766257:2912-3119 - AGG-----GTGTGTGCAAAGTTTCAATTCGATATCTTTAAAAC----------------TGAGAGACTAGTTCGCGTAGA----AACAGACAGACGGACAGACAGACGGACAGACG----GACGGACGGACAG----------------ACGGACATGCTTATATCAACTCAGGA--CGCGATCCTGATCAAGAATATATATACCT--TA----------T--------------------------------------------AGGTTCGGAGATGTCTCCT----------------------------------------------------------------------------------------------------------------AAGATTAAATAATAAATAAAC----------------------------AA-A------------------------------------------------------------------------------------------------------------------------------ATT
droBia1 scf7180000302411:461736-461947 + AA------------------TTCCAACCTTTCAGCTTT-GTAGTTTCC-GAAATCTCAG---------------CG----CTCATACGGACA--------GACAGACGGACAGACAGAC----AGACGGACAG----------------ACAGACG-GACTAGTTAGACTAGACT--CATGATCCTGATCAACAATAAATGTACTT--TA----------A--------A-TAAAATATAGACTTTCCAAAATCTATTATATT----------------------CTGGTAAT-------------TTTAATATAAG-AGTA---TTT-----------------------------------------------------------------------------AGGAAATTG-----AA----------------------------------------------------------------------------------------------------------------------------------------------------------TTA
droTak1 scf7180000414267:14704-14947 - AA-----------------GTTTCAAGCCGATAGCTTTAAAAC----------------TTAGAGACTAGTTTGCTTAGA----AACGGACG--------GACAGACGGATAGACG----GATAGACGGACCG----------------ACGGACATGGCTAGATCGACTCGTCT--ATTGATGCTGATCAAGAATATATATACTT--TA----------T--------------------------------------------GGGGTCGGAAACGTCTCCTTCACTGCGTTGCA-AA----------------CTTCTGACT-----------------------------------GTTTTATTTTATTTGGTAGAATGTAAACT-----------------------------------------------------------------------------TTAAGTTTGTATCCATTA--TGATT------------------------------------------TTT-----------------C---------------------AAC
droEug1 scf7180000409430:4068-4311 + CAA-GAATCTTCATGCTTAATCTCAACTTTGTATCTTCTATAGTTCCT-GAGATCTCAG---------------CG----TTCATACGGATG--------GACGGACGGACGGACGGACGGACGGACGGACAGACAGACGGACAGACAGACGGACATGGCTCAATCGACTTTGGT--ATTGATCCTGATCAAGAATATATACTGTT--------------T--------------------------------------------TCAAA-------------------------AAT----------------AAA-TGTT---TATAGAAAATT----T------------------------------------------------------------------------------AA----------------------------ATA---------------------------------------------------TATAGTATTATTTT-ACTATTACTTATTAGTAT-----------------T---------------------ATT
dm3 chr3R:804662-804844 - AAT------------------CTAATCTTTCTAGATTTGATAGCTCCCCTAGATC--AA---------------CA----TTCATACGGACAGACG----GACAGACAGTCGAACAGTCGAACAGACGAACGG----------------ACGGACATGGCCCGATCGGCAAATAC--ATAAA-------------------TACA--------------------------CC------------------------------ATA---A-------------------------TA-CACATAA---------------TT---TATTTATAATT----CAACGAAT-------C----------------------TAGTATACCCT--------------------------------------------------------TT-A--------------------AC----------------------------------------------------------------T-----------------C---------------------TAT
droSim2 x:18815552-18815717 - A-------------------TTTTAATTTTTTAGCTTTTATAGTTCCA-GATATCTT-A---------------TG----TTCATACGGACA--------AACGGAC----------------GGACGGACAG----------------GCGGACATGACCAGATCGACTCGACT--AGTGATCCTGGCCAAT---ATATTTACTT--AA----------TTTACTTAAAT------------------------------------------------------------------TTA----------------C---------------------------------------------------------------------------------------TTATTACTTATAC----------------------------TT-AA-----------------------------------AT--------------------------------------------ACTTT-----------------T---------------------CTT
droSec2 scaffold_8:2206713-2206872 - A-------------------TTTTAATTTTTTAGCTTTTATAGTTCCA-GAGATCTT-A---------------TG----TTCATACGGACA--------AACGGAC----------------TGTCGGACAG----------------ACGGACATGACCAGATCGACTCGACT--AGTGATCCTGATCCAAAATATATTTACTT--A-------------------AAT------------------------------------------------------------------TTA----------------C---------------------------------------------------------------------------------------TTTATACTTATAC----------------------------TT-AA-----------------------------------AT--------------------------------------------ACTTT-----------------T---------------------CTT
droYak3 2L:21469943-21470175 + GAG----TCTGTATGCTTAATCTCAACTTTCTAGCTTTTGTAGTTCCT-GAGATCTCGA---------------CG----TTCATACGGACG--------GACAGACGGACGAA--------AAGACGGACAG----------------ACGGACATGGCCAGATCGCC--AGAA--ATTAACGCT----------------------TG------------AACG-----TTAGATATAGATATCTGGGAAGATACCACAAA----------------------TTGTTAGT-------------T-----------ATTTTAT----------AAAAAATATATTT---------------------------------------------------------------CT------------------GA----CCTC-------ACC--------------TCAGATTTGACAAACAAA--AT--------------------------------------------GTTGC-----------------C---------------------GTC
droEre2 scaffold_4770:13662951-13663152 - GAA----GATGAATGCTTAATTTCAACATTTTAGCTTTTGTAGTTCCT-GGGATCGAAG---------------GG----ATCATACTAACA--------GACAGACAGACGGACGGAC----GAACGGACAG----------------ACGGA-ATGGCCAGTTCCACTCGGCT--ATTGATCCTGATCAACAACTTC--TACAT--CA----------T--------------------------------------------TAAATCAAAAATATTAC--------------A-------------------------------AAAAAATT--------------------------------------------AAAAAAATTAAT-----------------------------------------------TT---CTA-A-------------------------------------------------------------------------------------AT-----------------T---------------------TAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ACACGAGTATGTGTTCCAAATTTCAAGTCTCTAGCTTCAAAAG----------------CGCCGAAATAGATTGCG----TTCATACGGACA--------GACGGACAGACGGACGGACGGACAGACGGACAG----------------ACGGACATTGCACAA-------AACC--AATG-TACTGAT-------------------------AATATA-----------TT------------------------------ATT---A-------------------------AAT----------------AAA-TATT---TAATTAAAATT----C-------ATACATTTGAATATTT---------------------------TACTTAATATTATTAGGTAGTTG------------------A----AC------TA-AAT--------------TCTGAGTTGCTACAGAACA--TGATGTCT--------------------------------------TCAC-----------------T---------------------GTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTACAGAACA--TGATGTCT--------------------------------------TCAC-----------------T---------------------GT.2812.002200000
..........................................................................CG----TTCATACGGACA--------GACGGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.357700000
.......................CAAGTCTCTAGCTTCAAAAG----------------CGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.141100000
.....................TTCAAGTCTCTAGCTTCAAAAG----------------CGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2670.141000010
.........................AGTCTCTAGCTTCAAAAG----------------CGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.131000010
....................................TCAAAAG----------------CGCCGAAATAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.111100000
................................................................................TTCATACGGACA--------GACGGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000002
...CGAGTATGTGTTCCAAATTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
......................................................................................................................CGGACAGACGGACAG----------------ACGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
...............................................................................................................................GGACAG----------------ACGGACATTGCACAA-------AACC--AA...............................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
...........................................................................G----TTCATACGGACA--------GACGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
droVir3
T-------------CCAAATTTTCAAGTCTCTATCTCTTATAGGTTTT-GAGATCCTTG---------------CG----TTCATACATACG--------GACAGACGGAC------------GAATGGACAG----------------ACGGACAGGGCTAGATTGACTCGGCT--ATTGGTGCTGATCAAGAATATATATAC-------------------------------------------------------------------GGAGATGTTTCCTTCTGCCTGTTACA-TA----------------CATTTGC---ATTTTGCACTAA-----------TA---------------------------CAATATACCCTTATACCCATTTTTAATGGGCT----------------------------TAGGGAATAA-AT--------------------------------------------------------------------------------ACTGA-TGTGATAG------------------------------AACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................TTCAAGTCTCTATCTCTTATAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24183.1757000011000000000000006003533133443081313100000000000000000000000
............................................................................................................................................................................................TCAAGAATATATATAC-------------------------------------------------------------------GGAGATGTTT.........................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
.....................TTCAAGTCTCTATCTCTTATAGGTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2650.603000000000000000000000000010000000020000000000000000000000000000
.....................................................TCCTTG---------------CG----TTCATACATACG--------GACAGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.50100000000000000000000000000000010000000000000000000000000000000000
.....................TTCAAGTCTCTATCTCTTATAGGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25180.509000010000000000000000000001310102000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................CTGTTACA-TA----------------CATTTGC---ATTTTGCACT..................................................................................................................................................................................................................................................2730.331000000000000000000000000000000010000000000000000000000000000000
........................................................TTG---------------CG----TTCATACATACG--------GACAGACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.255000000000000000000000000000005000000000000000000000000000000000
................................................................................TTCATACATACG--------GACAGACGGAC------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.255000000000000000000000000000000000000500000000000000000000000000
................................................................................TTCATACATACG--------GACAGACGGAC------------GAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.251000000000000000000000000010000000000000000000000000000000000000
....................TTTCAAGTCTCTATCTCTTATAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25180.224000000000000000000000000000002100010000000000000000000000000000
.........................................................TG---------------CG----TTCATACATACG--------GACAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.153000003000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TACCCATTTTTAATGGGCT----------------------------TAGGG.......................................................................................................................................2470.141000000000000000000000001000000000000000000000000000000000000000
.......................CAAGTCTCTATCTCTTATAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000000000000000000000000001100000000000000000000000000000000
.......................CAAGTCTCTATCTCTTATAGGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102000000000000000000000000100001000000000000000000000000000000000
.....................................................TCCTTG---------------CG----TTCATACATACG--------GA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000000000000000000000000002000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CCATTTTTAATGGGCT----------------------------TAGGG.......................................................................................................................................21110.091000000000000000000000000100000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTTAATGGGCT----------------------------TAGGG.......................................................................................................................................16150.071000000000000000000000000000000000000000000000000100000000000000
......................TCAAGTCTCTATCTCTTATAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23190.051000000000000000000000000000010000000000000000000000000000000000
....................TTTCAAGTCTCTATCTCTTATAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24190.051001000000000000000000000000000000000000000000000000000000000000
.....................................TTATAGGTTTT-GAGATCCTTG---------------CG----TT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TTACA-TA----------------CATTTGC---ATTTTGCAC...................................................................................................................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
........................AAGTCTCTATCTCTTATAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000001000000000000000000000000000000000000000000000000000000
.........................AGTCTCTATCTCTTATAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................CTGTTACA-TA----------------CATTTGC---ATTTTG......................................................................................................................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
.................................................................................TCATACATACG--------GACAGACGGAC------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................CTGTTACA-TA----------------CATTTGC---ATTT........................................................................................................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................GCT--ATTGGTGCTGATCAAGAATATAT..........................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000010000000000000000000000000
.................................................................................TCATACATACG--------GACAGACGGAC------------G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................CCTGTTACA-TA----------------CATTTGC---ATTTTGCAC...................................................................................................................................................................................................................................................27200.051000000000000000000000000010000000000000000000000000000000000000
.....................TTCAAGTCTCTATCTCTTATAGGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
.....................................TTATAGGTTTT-GAGATCCTTG---------------CG----TTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000001000000000000000000000000000
...................................................GATCCTTG---------------CG----TTCATACATACG--------GACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................CTAGATTGACTCGGCT--ATTG.............................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000001000000000000000000000000000
................................................................................TTCATACATACG--------GACAGACGGAC------------G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000001000000000000000000000000000
.............................................................................................................................................................................CT--ATTGGTGCTGATCAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................21200.051000000010000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TGTTACA-TA----------------CATTTGC---ATTTTGCAC...................................................................................................................................................................................................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
droGri2
AGACCAGTAGATTTTCCAAGTGTCAAGTCCCTTTCTCTACGGA----------------TGTAGAAAAAAAATTAG----TTCATATAGACG--------GACGGACGCACAGACG----AACAGACAGCATG----------------ACGGACATTTCACAA-------GACC--AATA---T----CA---------------GATTA--TAATAAG-----------TCA--GT-------------------------TTA---A-------------------------ATT----------------CAC-AAAT---TAATTAAAAAA----G-------CTAGCATAAGATATTT---------------------------------------------------ATTA--AAATATTC--TG----AGAAAATCTAT-GAATTCCAGAT------------------------------------------------------------------ACATAATCAT-----------------TATCAGTTATGTGTTTTCTGTGTCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ACACGAGTCTACATACCAAATTTGATGGCTCTAGCTCTTACAGTCTCC-GAGATCTAGG---------------TG----TTCATACGGACA--------GACGGACAGACGGACGGACGGACAGACGGACGG----------------ACAGGTGCT--------------TCA--ATTTATGT----CAAT---TTATCAAACC--AA----------CCAACCAA---CC------------------------------GAA---A-------------------------TA-TATATGTTT-----------TTTATTT----------GAAAACAATAAAT---------------------------------------------------------------TT------------------GG----TTTGGGTATAG---------------------GATTGATAT-------------------------------------------------------------------------------------------------AGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................GACGGACAGACGGACGG----------------ACAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................2250.20110000
.........TACATACCAAATTTGATGGCTCTAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26130.15201010
.....................................TTACAGTCTCC-GAGATCTAGG---------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.15303000
........................................................................................................................GACAGACGGACGG----------------ACAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................1870.14110000
.....................................................TCTAGG---------------TG----TTCATACGGACA--------GACGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10202000
..ACGAGTCTACATACCAAATTTGATGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26120.08100010
..ACGAGTCTACATACCAAATTTGATGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27120.08100010
......GTCTACATACCAAATTTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.05101000
..............................CTAGCTCTTACAGTCTCC-GAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
........................................................................................................GACAGACGGACGGACGGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100
.............TACCAAATTTGATGGCTCTAGCTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
.........................................................................................................ACAGACGGACGGACGGACAGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100
dp5
TT------CTGGATACAAAATTTCGTGGCTCTAGCTCTTATAGTCTCT-GAGCACCATG---------------CG----CTCATAGCGACG--------GGCAGACGGACGGACGGACGGACGGACGGACGG----------------ACGGACGC------ACGGAC--------------TGCAAT------------TATTGGATA------------AAAGTAGTT------TTATACAGCAGG-----------------------------------------------------------------------------------------------AACG-------C----------------------TGTTATA------T-----------------------------------------------TT---CTT-A-------------------------------------------------------------------------------------AT-----------------A---------------------TCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................TTATAGTCTCT-GAGCACCATG---------------CG----C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24143.0043019100002300
.....................................TTATAGTCTCT-GAGCACCATG---------------CG----..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23116.001603000001300
.....................................TTATAGTCTCT-GAGCACCATG---------------CG----CTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26110.001001000000000
.....................................TTATAGTCTCT-GAGCACCATG---------------CG----CT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2517.0070600100000
.....................................TTATAGTCTCT-GAGCACCATG---------------CG----CTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000400
.......................................................................................................................................................................................TGCAAT------------TATTGGATA------------AAAGTAGTT------T....................................................................................................................................................................................................................................................................................................................................................2513.0030000000300
......................................TATAGTCTCT-GAGCACCATG---------------CG----C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000200
.......................................ATAGTCTCT-GAGCACCATG---------------CG----C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.............................................................................................................................ACGGACGG----------------ACGGACGC------ACGGAC--------------TGCAAT------------.........................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000100
....................................................................................................................................G----------------ACGGACGC------ACGGAC--------------TGCAAT------------TATT.....................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000100
.........................................AGTCTCT-GAGCACCATG---------------CG----C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
..........................................................................................CG--------GGCAGACGGACGGACGGACGGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
............................................................................................................................................................C------ACGGAC--------------TGCAAT------------TATTGGATA------------AAAG................................................................................................................................................................................................................................................................................................................................................................2611.0010000000100
.........................................................................................ACG--------GGCAGACGGACGGACGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
.....................................TTATAGTCTCT-GAGCACCATG---------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000100
.T------CTGGATACAAAATTTCGTGGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.6720200000000
.T------CTGGATACAAAATTTCGTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.6720100000100
.............TACAAAATTTCGTGGCTCTAGCTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.6720200000000
.............TACAAAATTTCGTGGCTCTAGCTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.3310100000000
.T------CTGGATACAAAATTTCGTGGCTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.3310100000000
.T------CTGGATACAAAATTTCGTGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.2510010000000
...................ATTTCGTGGCTCTAGCTCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510000000010
.........................................................................................................ACGGACGGACGGACGGACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020200000000
............................CTCTAGCTCTTATAGTCTCT-GAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
.......................................................................................................AGACGGACGGACGGACGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000100
...........................................................................................................GGACGGACGGACGGACGGACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000100
droPer2
GTG-------------------------CTCTAGCTCTTATAGTCTTT-GAGCATTAGGCGCTGAAGGGGA---CG-----TCAGACGGACA--------GACGGACGGACGGACAGACGGACAGACGGACAG----------------ACAGACATGGCTCAATCGACTCGGCT--ATTGATGCTGATCAAGAATATTGTTAG-------------------------------------------------------------------G-------------------------T----------------TGT-TTTA---GTATTATAACC----C--------TACATTTGTAT-------------------------------------------------------------------------------TT-------ACC--------------T--------------------TGCTGCT-AGCTTATAA---TTATTAGTGTTAATCTACAATTGTATTT-------------------A---------------------CTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................ATTAGGCGCTGAAGGGGA---CG-----T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.503020001
......................................................TTAGGCGCTGAAGGGGA---CG-----T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2021.503020001
......................................................TTAGGCGCTGAAGGGGA---CG-----TC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
......................................................TTAGGCGCTGAAGGGGA---CG-----TT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.251000001
.........................................................GGCGCTGAAGGGGA---CG-----TT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18120.172000002
.......................................ATAGTCTTT-GAGCATTAGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000020
........................................................................................................................GACAGACGGACAG----------------ACAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................18200.102000020
........................................................AGGCGCTGAAGGGGA---CG-----TT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.081010000
......................................................TTAGGCGCTGAAGGGGA---CG-----TTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22130.081000001
...............................................................................................................................................................................................................................................................................................................................TTA---GTATTATAACC----C--------TACATTTG.............................................................................................................................................................................................................................23200.051010000
..............................................................................................................................................................................................................................................................................................................................TTTA---GTATTATAACC----C--------TACATTTGTAT-------------------------------------------------------------------------------T..........................................................................................................................................28200.051000001
.................................................................................................................................................................................................................................................................................................................................A---GTATTATAACC----C--------TACATTTG.............................................................................................................................................................................................................................21200.051010000
....................................................................................................GACGGACGGACGGACAGACGGACAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000001
droAna3
AGG-----GTGTGTGCAAAGTTTCAACTCGATAGCTTTAAAAC----------------TGAGAGACTAGTTTGCGTAGA----AACAGACA--------GACAGACAGACGGACA-------GGATAGACAG----------------ACGGATATT---AGATCA----CGGT--AATA---A----CG---------------GATTAGGTAATAAA-----------TTACAAATTGACTCTCCA-------TTT-----------------------------------------------------------TATT---TAGAAAAAGTT----T-------GTATATATG-------------------------------------------------GGAAATAG-----AAAAATG--C--TGTTATAGATAACACTG-GGAGGCCAGATTTTTTTCCGC---ACTTCAG-----------------------------------------------TACAACCAC-----------------T---------------------GTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................C----------------TGAGAGACTAGTTTGCGTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.408800000
...........................................................TGAGAGACTAGTTTGCGTAGA----AACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.408080000
...........................................................TGAGAGACTAGTTTGCGTAGA----AACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102002000
..........................................................................CGTAGA----AACAGACA--------GACAGACAGACGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
........................................................................TGCGTAGA----AACAGACA--------GACAGACAGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
........................................................................TGCGTAGA----AACAGACA--------GAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000010
........................AACTCGATAGCTTTAAAAC----------------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
droBip1
AAAGAAGGGTGTGTGCAAAGTTTCAAGACGATAGCTTCAAAAC----------------TGAGAGACAAGTTCGCGTAGA----AACAGAC--------------------------------AGACGGATAG----------------ACGGACATGCTCATATCAACTCAGGAGCAGGGACCGTAATCATT---ATAA----AT--------AATA----TATTTAAAA------------------------------------------------------------------T----------------TAC-TTTG---TAATGATTACT----C-----------------------------------------------------------------------------------------------------------AA-----------------------------------CG---------------ATTTTTAATTTTTTAAATCAAGACTAATAATT-------------------A---------------------TTTSizeHit CountTotal NormTotal
No Reads
droKik1
AGA--AGACTATATGCAAAGTTTCATTCAGATAGCTTTAAAAC----------------TGAGGGACTAGTTTGCGTAGA----AACGGACA--------GACGGACGGACGGACG----GACAGACGGACAG----------------ACGGACATGGCTAGATCGACTCGGCT--GTTGATACTGATCAATAATATATATACTT--TA----------T--------------------------------------------AGGGTCGGAAAGGTCTCCTTCACTGCGTTGCA-AA----------------CTTCTGACT-----------------------------------G----------------------------------------------------AAATTA--TAATACCC--TG----CAAGGGTATAA-AAA-------------T-------G----------------------------------------------------------TGGTTTACCAAAGAACACTTCA---------------------ATTSizeHit CountTotal NormTotal
No Reads
droFic1
T-------------------------------AGCTTTAAAAC----------------TGAGAGACTAGTTTAAAGAGA----AACAGACAGACG----GACAGACGGATAGACGGCC----AGACGGACAG----ACGGACAG----ACGTACAGACGTATTCTGATTCTACT--CGTGATGCTTATCAAGAATATATATAT-------------------------------------------------------------------GACGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTCATTTC------------CATCAGAA--------------------------------------------TCTTC-----------------A---------------------GCTSizeHit CountTotal NormTotal
No Reads
droEle1
AA-----------------GTTTCATGCAGATAGCTTTAAAAC----------------TGAGAGACTAGTTTGCATATA----AACGGACG--------GACAGACGGACAGACGGACAGACGGACGGACAG----------------ACGGACATGGCTAGATCGACTCGCCT--AGTGATGCTGATCAAGAATATATATACTT--TA----------T--------------------------------------------AGGGTCGGAGATGTCTCCTTCACTGCGTTGCA-AA----------------CTTCTGACT-----------------------------------G----------------------------------------------------AAATTA--TAATACCCTCTG----CAAGGGTATAA-AAA-------------T-------G--------------ATTTCT--------------------------------------TTGT-----------------T---------------------ATTSizeHit CountTotal NormTotal
No Reads
droRho1
AGG-----GTGTGTGCAAAGTTTCAATTCGATATCTTTAAAAC----------------TGAGAGACTAGTTCGCGTAGA----AACAGACAGACGGACAGACAGACGGACAGACG----GACGGACGGACAG----------------ACGGACATGCTTATATCAACTCAGGA--CGCGATCCTGATCAAGAATATATATACCT--TA----------T--------------------------------------------AGGTTCGGAGATGTCTCCT----------------------------------------------------------------------------------------------------------------AAGATTAAATAATAAATAAAC----------------------------AA-A------------------------------------------------------------------------------------------------------------------------------ATTSizeHit CountTotal NormTotal
No Reads
droBia1
AA------------------TTCCAACCTTTCAGCTTT-GTAGTTTCC-GAAATCTCAG---------------CG----CTCATACGGACA--------GACAGACGGACAGACAGAC----AGACGGACAG----------------ACAGACG-GACTAGTTAGACTAGACT--CATGATCCTGATCAACAATAAATGTACTT--TA----------A--------A-TAAAATATAGACTTTCCAAAATCTATTATATT----------------------CTGGTAAT-------------TTTAATATAAG-AGTA---TTT-----------------------------------------------------------------------------AGGAAATTG-----AA----------------------------------------------------------------------------------------------------------------------------------------------------------TTASizeHit CountTotal NormTotal
No Reads
droTak1
AA-----------------GTTTCAAGCCGATAGCTTTAAAAC----------------TTAGAGACTAGTTTGCTTAGA----AACGGACG--------GACAGACGGATAGACG----GATAGACGGACCG----------------ACGGACATGGCTAGATCGACTCGTCT--ATTGATGCTGATCAAGAATATATATACTT--TA----------T--------------------------------------------GGGGTCGGAAACGTCTCCTTCACTGCGTTGCA-AA----------------CTTCTGACT-----------------------------------GTTTTATTTTATTTGGTAGAATGTAAACT-----------------------------------------------------------------------------TTAAGTTTGTATCCATTA--TGATT------------------------------------------TTT-----------------C---------------------AACSizeHit CountTotal NormTotal
No Reads
droEug1
CAA-GAATCTTCATGCTTAATCTCAACTTTGTATCTTCTATAGTTCCT-GAGATCTCAG---------------CG----TTCATACGGATG--------GACGGACGGACGGACGGACGGACGGACGGACAGACAGACGGACAGACAGACGGACATGGCTCAATCGACTTTGGT--ATTGATCCTGATCAAGAATATATACTGTT--------------T--------------------------------------------TCAAA-------------------------AAT----------------AAA-TGTT---TATAGAAAATT----T------------------------------------------------------------------------------AA----------------------------ATA---------------------------------------------------TATAGTATTATTTT-ACTATTACTTATTAGTAT-----------------T---------------------ATTSizeHit CountTotal NormTotal
No Reads
dm3
AAT------------------CTAATCTTTCTAGATTTGATAGCTCCCCTAGATC--AA---------------CA----TTCATACGGACAGACG----GACAGACAGTCGAACAGTCGAACAGACGAACGG----------------ACGGACATGGCCCGATCGGCAAATAC--ATAAA-------------------TACA--------------------------CC------------------------------ATA---A-------------------------TA-CACATAA---------------TT---TATTTATAATT----CAACGAAT-------C----------------------TAGTATACCCT--------------------------------------------------------TT-A--------------------AC----------------------------------------------------------------T-----------------C---------------------TATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................ATT----CAACGAAT-------C----------------------TAGTATACCCT--------------------------------------------------------TT-..................................................................................................................................25612.337400000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000110140124281000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TTCATACGGACAGACG----GACAGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2326.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000009000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................TCATACGGACAGACG----GACAGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2224.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000313001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................ATT----CAACGAAT-------C----------------------TAGTATACCCT--------------------------------------------------------T....................................................................................................................................2462.67160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040502050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CATACGGACAGACG----GACAGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2122.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................TTCATACGGACAGACG----GACAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2261.1770000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000003000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000
.................................................................................TCATACGGACAGACG----GACAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2161.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000300000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....................................................ATC--AA---------------CA----TTCATACGGACAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................TTTGATAGCTCCCCTAGATC--A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................CA----TTCATACGGACAGACG----GAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2161.0060000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000002000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................CTAGATC--AA---------------CA----TTCATACGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................A----TTCATACGGACAGACG----G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.8660000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000400000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................TTCATACGGACAGACG----GACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000004035000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................CA----TTCATACGGACAGACG----GA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.5740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................A---------------CA----TTCATACGGACAGACG----GA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.5740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000101000000000000000000000000000000000
....................................................................................TACGGACAGACG----GACAGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TTCATACGGACAGACG----GACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.4770000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000110000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................CA----TTCATACGGACAGACG----G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.4330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................A----TTCATACGGACAGACG----GACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TT----CAACGAAT-------C----------------------TAGTATACCCT--------------------------------------------------------TT-A--------------------AC----------------------------------------------------------------...........................................2750.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TCATACGGACAGACG----GACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CAGACGAACGG----------------ACGGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................A----TTCATACGGACAGACG----GACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AACGAAT-------C----------------------TAGTATACCCT--------------------------------------------------------TT-..................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AACGAAT-------C----------------------TAGTATACCCT--------------------------------------------------------TT-A--------------------AC----------------------------------------------------------------T-----------------C---------------------...2650.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AACGAAT-------C----------------------TAGTATACCCT--------------------------------------------------------TT-A--------------------AC----------------------------------------------------------------...........................................2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................ATT----CAACGAAT-------C----------------------TAGTATACCCT--------------------------------------------------------.....................................................................................................................................2360.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................ATT----CAACGAAT-------C----------------------TAGTATACCC..............................................................................................................................................................................................2270.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................CATACGGACAGACG----GACAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................AAT-------C----------------------TAGTATACCCT--------------------------------------------------------TT-A--------------------AC----------------------------------------------------------------T-----------------C---------------------...2270.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................T-------C----------------------TAGTATACCCT--------------------------------------------------------TT-A--------------------AC----------------------------------------------------------------T-----------------C---------------------T..2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TCATACGGACAGACG----GACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................ATT----CAACGAAT-------C----------------------TAGTATAC................................................................................................................................................................................................2080.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................ATT----CAACGAAT-------C----------------------TAGTATACCCT--------------------------------------------------------G....................................................................................................................................2490.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................CA----TTCATACGGACAGACG----GACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................AT-------C----------------------TAGTATACCCT--------------------------------------------------------TT-A--------------------AC----------------------------------------------------------------...........................................19140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CATACGGACAGACG----GACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.0610000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TTCATACGGACAGACG----GAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CATACGGACAGACG----GACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AACGAAT-------C----------------------TAGTATACCCT--------------------------------------------------------T....................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................CAACGAAT-------C----------------------TAGTATACCCT--------------------------------------------------------T....................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
A-------------------TTTTAATTTTTTAGCTTTTATAGTTCCA-GATATCTT-A---------------TG----TTCATACGGACA--------AACGGAC----------------GGACGGACAG----------------GCGGACATGACCAGATCGACTCGACT--AGTGATCCTGGCCAAT---ATATTTACTT--AA----------TTTACTTAAAT------------------------------------------------------------------TTA----------------C---------------------------------------------------------------------------------------TTATTACTTATAC----------------------------TT-AA-----------------------------------AT--------------------------------------------ACTTT-----------------T---------------------CTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................ATAGTTCCA-GATATCTT-A---------------TG----TTCATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
......................................................................................................................................................CGGACATGACCAGATCGACTC.......................................................................................................................................................................................................................................................................................................................................................................................................................2160.50300200000000001000
..........................................................................................................................................................CATGACCAGATCGACTC.......................................................................................................................................................................................................................................................................................................................................................................................................................1780.25200000000002000000
......................................................................................................................................................CGGACATGACCAGATCGACTCGTT....................................................................................................................................................................................................................................................................................................................................................................................................................2470.14100000001000000000
................................................................................TTCATACGGACA--------AACGGAC----------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.10100000000001000000
............................................................................................................................................................TGACCAGATCGACTCG......................................................................................................................................................................................................................................................................................................................................................................................................................16100.10100000000100000000
............................................................................................................................................................TGACCAGATCGACTC.......................................................................................................................................................................................................................................................................................................................................................................................................................15110.09100000001000000000
..........................................................................................................................................................CATGACCAGATCGACT........................................................................................................................................................................................................................................................................................................................................................................................................................16140.07100000000001000000
..................................................................................CATACGGACA--------AACGGAC----------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
droSec2
A-------------------TTTTAATTTTTTAGCTTTTATAGTTCCA-GAGATCTT-A---------------TG----TTCATACGGACA--------AACGGAC----------------TGTCGGACAG----------------ACGGACATGACCAGATCGACTCGACT--AGTGATCCTGATCCAAAATATATTTACTT--A-------------------AAT------------------------------------------------------------------TTA----------------C---------------------------------------------------------------------------------------TTTATACTTATAC----------------------------TT-AA-----------------------------------AT--------------------------------------------ACTTT-----------------T---------------------CTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................GGACAG----------------ACGGACATGACCAGATCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................2550.2011000
................................................................................................................................GACAG----------------ACGGACATGACCA................................................................................................................................................................................................................................................................................................................................................................................................................................1890.1110010
droYak3
GAG----TCTGTATGCTTAATCTCAACTTTCTAGCTTTTGTAGTTCCT-GAGATCTCGA---------------CG----TTCATACGGACG--------GACAGACGGACGAA--------AAGACGGACAG----------------ACGGACATGGCCAGATCGCC--AGAA--ATTAACGCT----------------------TG------------AACG-----TTAGATATAGATATCTGGGAAGATACCACAAA----------------------TTGTTAGT-------------T-----------ATTTTAT----------AAAAAATATATTT---------------------------------------------------------------CT------------------GA----CCTC-------ACC--------------TCAGATTTGACAAACAAA--AT--------------------------------------------GTTGC-----------------C---------------------GTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................GACAG----------------ACGGACATGGCCAGATCGCC--.......................................................................................................................................................................................................................................................................................................................................................................................................................2560.17100100000000
.................................................................................................................................ACAG----------------ACGGACATGGCCAGATCGCC--.......................................................................................................................................................................................................................................................................................................................................................................................................................2460.17101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGATTTGACAAACAAA--AT--------------------------------------------GTTGC-----------------C---------------------G..27130.15202000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGATTTGACAAACAAA--AT--------------------------------------------GTTGC-----------------C---------------------GT.28130.15201000010000
.....................................................TCTCGA---------------CG----TTCATACGGACG--------GACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.15303000000000
.............................................................................................................................ACGGACAG----------------ACGGACATGGCCAGATCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2790.11100100000000
..............................................................................................................................CGGACAG----------------ACGGACATGGCCAGATCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2690.11101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGATTTGACAAACAAA--AT--------------------------------------------GTTGC-----------------C---------------------...26140.07100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGACAAACAAA--AT--------------------------------------------GTTGC-----------------C---------------------GT.26140.07100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGACAAACAAA--AT--------------------------------------------GTTGC-----------------C---------------------G..24150.07101000000000
.................................................................................................................................ACAG----------------ACGGACATGGCCAGATCGCC--C......................................................................................................................................................................................................................................................................................................................................................................................................................25180.06100100000000
...........................................................................................................................AGACGGACAG----------------ACGGACATGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05110000000000
...............................TAGCTTTTGTAGTTCCT-GAGATCTCGA---------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100100000000
droEre2
GAA----GATGAATGCTTAATTTCAACATTTTAGCTTTTGTAGTTCCT-GGGATCGAAG---------------GG----ATCATACTAACA--------GACAGACAGACGGACGGAC----GAACGGACAG----------------ACGGA-ATGGCCAGTTCCACTCGGCT--ATTGATCCTGATCAACAACTTC--TACAT--CA----------T--------------------------------------------TAAATCAAAAATATTAC--------------A-------------------------------AAAAAATT--------------------------------------------AAAAAAATTAAT-----------------------------------------------TT---CTA-A-------------------------------------------------------------------------------------AT-----------------T---------------------TAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................TCCACTCGGCT--ATTGATCCTGATC....................................................................................................................................................................................................................................................................................................................................................................................................2460.8350000005

Generated: 05/18/2015 at 02:13 AM