dmo_2217

intron [Dmoj\GI14173-in]; exon [dmoj_GLEANR_14388:2]; CDS [Dmoj\GI14173-cds]; CDS [Dmoj\GI14173-cds]; exon [dmoj_GLEANR_14388:1]

Name	Class	Family	Strand
OSVALDO_I-int	LTR	Gypsy	-

Name

Class

Family

Strand

OSVALDO_I-int

LTR

Gypsy

##################################################------------------------------################################################## CACCGGTGTCCAGACCACGAGCGCGCAGGAGTAGAACGCGGCTGCCGCCGGTGAGACTGCCGTTTCACCCACACCGGCAGCCGAAGAGACGGCTACGACGCCAGCGGAAAAGAGGACAGGGCATGGTCAC ************************************************......((((((............))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body	V041 embryo	V056 head	V049 head
.............................................CTCTGGTGAGACTGCCGGT..................................................................	19	3	20	10.80	216	202	0	11	0	2	1
.........................CAGGAGTAGAACGCGGCTGCC....................................................................................	21	0	3	0.67	2	1	1	0	0	0	0
...............................................................................................................GAGGACAGGGCATGGTCAC	19	0	9	0.56	5	4	1	0	0	0	0
.........................CTGGAGTAGAACGCGGCTGC.....................................................................................	20	1	3	0.33	1	0	1	0	0	0	0
.........................CAGGAGTAGAACGCGGCTGC.....................................................................................	20	0	3	0.33	1	0	1	0	0	0	0
...............................................................................................................GAGGACAGGGCATGGTCA.	18	0	9	0.33	3	2	0	0	1	0	0
.......................................................................................................GCGGAAAAGAGGACAGGGCATGGT...	24	0	7	0.29	2	1	1	0	0	0	0
..........................................................GCCGTTTCACCCACACCGGCAGC.................................................	23	0	11	0.27	3	2	1	0	0	0	0
............GACCACGAGCGCGCAGGAGTAG................................................................................................	22	0	4	0.25	1	1	0	0	0	0	0
...........AGACCACGAGCGCGCAGGAGTAG................................................................................................	23	0	4	0.25	1	1	0	0	0	0	0
.........................................................TGCCGTTTCACCCACACCGGCAGC.................................................	24	0	11	0.18	2	1	1	0	0	0	0
...................................................TGAGACTGCCGTTTCACCCAC..........................................................	21	0	11	0.18	2	1	1	0	0	0	0
..........................................................GCCGTTTCACCCACACCGGCAGCC................................................	24	0	11	0.18	2	2	0	0	0	0	0
..........................................................GCCGTTTCACCCACACCGGCAGCCGA..............................................	26	0	11	0.18	2	2	0	0	0	0	0
.......................................................................................................GCGGAAAAGAGGACAGGGCATGG....	23	0	7	0.14	1	0	1	0	0	0	0
............................................................................................................AAAGAGGACAGGGCATGGTC..	20	0	7	0.14	1	0	1	0	0	0	0
.......................................................................................................GCGGAAAAGAGGACAGGGC........	19	0	7	0.14	1	0	1	0	0	0	0
......................................................................................................AGCGGAAAAGAGGACAGGGC........	20	0	7	0.14	1	0	1	0	0	0	0
...............................................................................................................GAGGACAGGGCATGGTCAA	19	1	9	0.11	1	1	0	0	0	0	0
..........CAGACCACGAGCGCGCAGGAGT..................................................................................................	22	0	9	0.11	1	1	0	0	0	0	0
..........................................TGCCGCCGGTGAGACTGCCGTTTCAC..............................................................	26	0	10	0.10	1	0	1	0	0	0	0
.......GTCCAGACCACGAGCGCG.........................................................................................................	18	0	10	0.10	1	1	0	0	0	0	0
.....GTGTCCAGACCACGAGCGCG.........................................................................................................	20	0	10	0.10	1	1	0	0	0	0	0
........TCCAGACCACGAGCGCGCATT.....................................................................................................	21	2	10	0.10	1	1	0	0	0	0	0
...................................................................CCCACACCGGCAGCCGAAGAGAC........................................	23	0	11	0.09	1	0	1	0	0	0	0
..........................................................GCCGTTTCACCCACACCGGCAGCCGAAG............................................	28	0	11	0.09	1	1	0	0	0	0	0
.........................................................TGCCGTTTCACCCACACCGGCAGCCG...............................................	26	0	11	0.09	1	0	1	0	0	0	0
................................................................TCACCCACACCGGCAGCCGAAGAGACGG......................................	28	0	11	0.09	1	1	0	0	0	0	0
...................................................................CCCACACCGGCAGCCGAAG............................................	19	0	11	0.09	1	0	1	0	0	0	0
...............................................................TTCACCCACACCGGCAGCCGAAGAGA.........................................	26	0	11	0.09	1	1	0	0	0	0	0
..........................................................GCCGTTTCACCCACACCGG.....................................................	19	0	11	0.09	1	1	0	0	0	0	0
.............................................................GTTTCACCCACACCGGCAGCCG...............................................	22	0	11	0.09	1	1	0	0	0	0	0
........................................................................ACCGGCAGCCGAAGAGACGG......................................	20	0	11	0.09	1	1	0	0	0	0	0
...................................................................CCCACACCGGCAGCCGAAGAGACGG......................................	25	0	11	0.09	1	1	0	0	0	0	0
...............................................................TTCACCCACACCGGCAGCCGAAGA...........................................	24	0	11	0.09	1	1	0	0	0	0	0
...............................................................TTCACCCACACCGGCAGCCGAAGAG..........................................	25	0	11	0.09	1	1	0	0	0	0	0
...............................................................TTCACCCACACCGGCAGCCGAAGAGAC........................................	27	0	11	0.09	1	1	0	0	0	0	0
..........................................................GGCGTTTCACCCACACCGGCAGCC................................................	24	1	11	0.09	1	0	1	0	0	0	0
..........................................................GCCGTTTCACCCACACCGGCAGCCG...............................................	25	0	11	0.09	1	1	0	0	0	0	0
..........................................................GCCGTTTCACCCACACCGGCAACC................................................	24	1	11	0.09	1	0	1	0	0	0	0
...................................................TGAGACTGCCGTTTCACCCACACCGG.....................................................	26	0	11	0.09	1	0	1	0	0	0	0
............................................................CGTTTCACCCACACCGGCAGC.................................................	21	0	11	0.09	1	0	1	0	0	0	0
...............................................................................................................GAGGACAGGGCATGGTTG.	18	2	14	0.07	1	1	0	0	0	0	0
............................................ACTCCGGTGAGACTGCCGG...................................................................	19	3	15	0.07	1	1	0	0	0	0	0
................................................................................CCGAAGAGACGGCTACGACGCC............................	22	0	17	0.06	1	1	0	0	0	0	0
............................................ACGCTGGTGAGACTGCCGG...................................................................	19	3	20	0.05	1	1	0	0	0	0	0

##################################################------------------------------##################################################
CACCGGTGTCCAGACCACGAGCGCGCAGGAGTAGAACGCGGCTGCCGCCGGTGAGACTGCCGTTTCACCCACACCGGCAGCCGAAGAGACGGCTACGACGCCAGCGGAAAAGAGGACAGGGCATGGTCAC
**************************************************......((((((............))))))**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V110
male body

V041
embryo

V056
head

V049
head

.............................................CTCTGGTGAGACTGCCGGT..................................................................

10.80

216

202

.........................CAGGAGTAGAACGCGGCTGCC....................................................................................

0.67

...............................................................................................................GAGGACAGGGCATGGTCAC

0.56

.........................CTGGAGTAGAACGCGGCTGC.....................................................................................

0.33

.........................CAGGAGTAGAACGCGGCTGC.....................................................................................

0.33

...............................................................................................................GAGGACAGGGCATGGTCA.

0.33

.......................................................................................................GCGGAAAAGAGGACAGGGCATGGT...

0.29

..........................................................GCCGTTTCACCCACACCGGCAGC.................................................

0.27

............GACCACGAGCGCGCAGGAGTAG................................................................................................

0.25

...........AGACCACGAGCGCGCAGGAGTAG................................................................................................

0.25

.........................................................TGCCGTTTCACCCACACCGGCAGC.................................................

0.18

...................................................TGAGACTGCCGTTTCACCCAC..........................................................

0.18

..........................................................GCCGTTTCACCCACACCGGCAGCC................................................

0.18

..........................................................GCCGTTTCACCCACACCGGCAGCCGA..............................................

0.18

.......................................................................................................GCGGAAAAGAGGACAGGGCATGG....

0.14

............................................................................................................AAAGAGGACAGGGCATGGTC..

0.14

.......................................................................................................GCGGAAAAGAGGACAGGGC........

0.14

......................................................................................................AGCGGAAAAGAGGACAGGGC........

0.14

...............................................................................................................GAGGACAGGGCATGGTCAA

0.11

..........CAGACCACGAGCGCGCAGGAGT..................................................................................................

0.11

..........................................TGCCGCCGGTGAGACTGCCGTTTCAC..............................................................

0.10

.......GTCCAGACCACGAGCGCG.........................................................................................................

0.10

.....GTGTCCAGACCACGAGCGCG.........................................................................................................

0.10

........TCCAGACCACGAGCGCGCATT.....................................................................................................

0.10

...................................................................CCCACACCGGCAGCCGAAGAGAC........................................

0.09

..........................................................GCCGTTTCACCCACACCGGCAGCCGAAG............................................

0.09

.........................................................TGCCGTTTCACCCACACCGGCAGCCG...............................................

0.09

................................................................TCACCCACACCGGCAGCCGAAGAGACGG......................................

0.09

...................................................................CCCACACCGGCAGCCGAAG............................................

0.09

...............................................................TTCACCCACACCGGCAGCCGAAGAGA.........................................

0.09

..........................................................GCCGTTTCACCCACACCGG.....................................................

0.09

.............................................................GTTTCACCCACACCGGCAGCCG...............................................

0.09

........................................................................ACCGGCAGCCGAAGAGACGG......................................

0.09

...................................................................CCCACACCGGCAGCCGAAGAGACGG......................................

0.09

...............................................................TTCACCCACACCGGCAGCCGAAGA...........................................

0.09

...............................................................TTCACCCACACCGGCAGCCGAAGAG..........................................

0.09

...............................................................TTCACCCACACCGGCAGCCGAAGAGAC........................................

0.09

..........................................................GGCGTTTCACCCACACCGGCAGCC................................................

0.09

..........................................................GCCGTTTCACCCACACCGGCAGCCG...............................................

0.09

..........................................................GCCGTTTCACCCACACCGGCAACC................................................

0.09

...................................................TGAGACTGCCGTTTCACCCACACCGG.....................................................

0.09

............................................................CGTTTCACCCACACCGGCAGC.................................................

0.09

...............................................................................................................GAGGACAGGGCATGGTTG.

0.07

............................................ACTCCGGTGAGACTGCCGG...................................................................

0.07

................................................................................CCGAAGAGACGGCTACGACGCC............................

0.06

............................................ACGCTGGTGAGACTGCCGG...................................................................

0.05

GTGGCCACAGGTCTGGTGCTCGCGCGTCCTCATCTTGCGCCGACGGCGGCCACTCTGACGGCAAAGTGGGTGTGGCCGTCGGCTTCTCTGCCGATGCTGCGGTCGCCTTTTCTCCTGTCCCGTACCAGTG ************************************************......((((((............))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V041 embryo	V110 male body	V049 head	V056 head
.........GGTCTGGTGCTCGCGCGTCCTCATCT...............................................................................................	26	0	3	22.33	67	48	6	9	3	0	1
..........GTCTGGTGCTCGCGCGTCCTCATCT...............................................................................................	25	0	3	13.00	39	34	1	2	2	0	0
...............................................................................................GCTGCGGTCGCCTTTTCTCCTGTCCC.........	26	0	1	10.00	10	10	0	0	0	0	0
...........TCTGGTGCTCGCGCGTCCTCATCT...............................................................................................	24	0	3	8.33	25	12	13	0	0	0	0
................................................................................................CTGCGGTCGCCTTTTCTCCTGTCCC.........	25	0	1	8.00	8	5	3	0	0	0	0
............................................GGCGGCCACTCTGACGGCAAAGTG..............................................................	24	0	10	6.20	62	51	11	0	0	0	0
.................................................................................................TGCGGTCGCCTTTTCTCCTGTCCC.........	24	0	1	6.00	6	4	1	0	1	0	0
............CTGGTGCTCGCGCGTCCTCATCT...............................................................................................	23	0	3	5.33	16	5	11	0	0	0	0
...........................................CGGCGGCCACTCTGACGGCAAAGTG..............................................................	25	0	10	5.10	51	28	23	0	0	0	0
.......CAGGTCTGGTGCTCGCGCGTCCTCATCT...............................................................................................	28	0	3	3.33	10	8	2	0	0	0	0
..........................................ACGGCGGCCACTCTGACGGCAAAGTG..............................................................	26	0	10	2.60	26	23	3	0	0	0	0
...................................................................................................CGGTCGCCTTTTCTCCTGTCCC.........	22	0	1	2.00	2	1	1	0	0	0	0
...........CCTGGTGCTCGCGCGTCCTCATCT...............................................................................................	24	1	3	2.00	6	0	6	0	0	0	0
........AGGTCTGGTGCTCGCGCGTCCTCATCT...............................................................................................	27	0	3	2.00	6	6	0	0	0	0	0
.............................................GCGGCCACTCTGACGGCAAAGTG..............................................................	23	0	10	1.80	18	17	1	0	0	0	0
..............................................CGGCCACTCTGACGGCAAAGTG..............................................................	22	0	10	1.50	15	10	5	0	0	0	0
.........GGTCTGGTGCTCGCGCGTCCTCATC................................................................................................	25	0	4	1.25	5	4	0	0	0	1	0
.........GGTCTGGTGCTCGCGCGTCCTCAT.................................................................................................	24	0	9	1.22	11	6	1	4	0	0	0
...........TCTGGTGCTCGCGCGTCCTCATGT...............................................................................................	24	1	8	1.13	9	0	9	0	0	0	0
...............................................................................................GCTGCGGTCGCCTTTTCTCCTGTCC..........	25	0	1	1.00	1	1	0	0	0	0	0
................................................................................................CTGCGGTCGCCTTTTCTCCTGTCC..........	24	0	1	1.00	1	1	0	0	0	0	0
..............GGTGCTCGCGCGTCCTCATCT...............................................................................................	21	0	3	1.00	3	2	0	1	0	0	0
..........GTCTGGTGCTCGCGCGTCCTCAT.................................................................................................	23	0	9	0.78	7	7	0	0	0	0	0
.........GGTCTGGTGCTCGCGCGTCCTCATGT...............................................................................................	26	1	8	0.75	6	0	6	0	0	0	0
...........TCTGGTGCTCGCGCGTCCTCATC................................................................................................	23	0	4	0.75	3	2	1	0	0	0	0
...........................................CGGCGGCCACTCTGACGGCAAAGGG..............................................................	25	1	10	0.70	7	0	7	0	0	0	0
......ACAGGTCTGGTGCTCGCGCGTCCTCATCT...............................................................................................	29	0	3	0.67	2	2	0	0	0	0	0
....................................................CTCTGACGGCAAAGTGGGTGTGGCC.....................................................	25	0	11	0.55	6	3	3	0	0	0	0
...........CCTGGTGCTCGCGCGTCCTCATCTT..............................................................................................	25	1	2	0.50	1	0	1	0	0	0	0
.......CAGGTCTGGTGCTCGCGCGTCCTCATGT...............................................................................................	28	1	8	0.50	4	0	4	0	0	0	0
.........GGTCTGGTGCTCGCGCGTCCTCATCTT..............................................................................................	27	0	2	0.50	1	1	0	0	0	0	0
..........GTCTGGTGCTCGCGCGTCCTCATC................................................................................................	24	0	4	0.50	2	2	0	0	0	0	0
............CTGGTGCTCGCGCGTCCTCATGT...............................................................................................	23	1	8	0.50	4	0	4	0	0	0	0
............................................GGCGGCCACTCTGACGGCAAAGT...............................................................	23	0	10	0.50	5	5	0	0	0	0	0
.......CAGGTCTGGTGCTCGCGCGTCCTCATC................................................................................................	27	0	4	0.50	2	2	0	0	0	0	0
.......CAGGTCTGGTGCTCGCGCGTCCTCAT.................................................................................................	26	0	9	0.44	4	2	2	0	0	0	0
........AGGTCTGGTGCTCGCGCGTCCTCAT.................................................................................................	25	0	9	0.44	4	3	1	0	0	0	0
.....................................................................................................GTCGCCTTTTCTCCTGTCCC.........	20	0	7	0.43	3	3	0	0	0	0	0
..........................................ACGGCGGCCACTCTGACGGCAAAGT...............................................................	25	0	10	0.40	4	4	0	0	0	0	0
.....................................................TCTGACGGCAAAGTGGGTGTGGCC.....................................................	24	0	11	0.36	4	1	3	0	0	0	0
....................................................................................................GGTCGCCTTTTCTCCTGTCCC.........	21	0	6	0.33	2	1	1	0	0	0	0
.............TGGTGCTCGCGCGTCCTCATCT...............................................................................................	22	0	3	0.33	1	1	0	0	0	0	0
...........TCTGGTGCTCGCGCGTCCCCATCT...............................................................................................	24	1	3	0.33	1	1	0	0	0	0	0
.........GGTCTGGTGCTCGCGCGTCCTCA..................................................................................................	23	0	9	0.33	3	3	0	0	0	0	0
............CTGGTGCTCGCGCATCCTCATCT...............................................................................................	23	1	3	0.33	1	0	0	1	0	0	0
............CTGGGGCTCGCGCGTCCTCATCT...............................................................................................	23	1	3	0.33	1	0	0	1	0	0	0
.............CGGTGCTCGCGCGTCCTCATCT...............................................................................................	22	1	3	0.33	1	0	1	0	0	0	0
..........TTCTGGTGCTCGCGCGTCCTCATCT...............................................................................................	25	1	3	0.33	1	1	0	0	0	0	0
..........GCCTGGTGCTCGCGCGTCCTCATCT...............................................................................................	25	1	3	0.33	1	0	0	1	0	0	0
............................................GGCGGCCACTCTGACGGCAAAGGG..............................................................	24	1	10	0.30	3	0	3	0	0	0	0
...............................................GGCCACTCTGACGGCAAAGTG..............................................................	21	0	10	0.30	3	3	0	0	0	0	0
...........CCTGGTGCTCGCGCGTCCTCTTCT...............................................................................................	24	2	4	0.25	1	0	1	0	0	0	0
..........GTCTGGTGCTCGCGCGTCCTCATGT...............................................................................................	25	1	8	0.25	2	0	2	0	0	0	0
......GTAGGTCTGGTGCTCGCGCGTCCTCATC................................................................................................	28	2	4	0.25	1	1	0	0	0	0	0
...........TCTGGTGCTCGCGCGTCCTCTTCT...............................................................................................	24	1	4	0.25	1	0	1	0	0	0	0
..............................................CGGCCACTCTGACGGCAAAGGG..............................................................	22	1	10	0.20	2	0	2	0	0	0	0
...........................................CGGCGGCCACTCTGACGGCAAAGT...............................................................	24	0	10	0.20	2	1	1	0	0	0	0
............................................GGCGGCCACTCTGACGGCAAACTG..............................................................	24	1	10	0.20	2	0	2	0	0	0	0
.........................................GACGGCGGCCACTCTGACGGCAAAGTG..............................................................	27	0	10	0.20	2	2	0	0	0	0	0
...........................................TGGCGGCCACTCTGACGGCAAAGTG..............................................................	25	1	10	0.20	2	2	0	0	0	0	0
...........................................TTGCGGCCACTCTGACGGCAAAGTG..............................................................	25	2	10	0.20	2	2	0	0	0	0	0
..........................................................CGGCAAAGTGGGTGTGGCCGTCGGCT..............................................	26	0	11	0.18	2	1	1	0	0	0	0
............................................................GCAAAGTGGGTGTGGCCGTCGGCTTCT...........................................	27	0	11	0.18	2	2	0	0	0	0	0
....................................................................................................GGTCGCCTTTTCTCCTGCCCC.........	21	1	6	0.17	1	0	1	0	0	0	0
...............GTGCTCGCGCGGCCGGATCT...............................................................................................	20	3	6	0.17	1	1	0	0	0	0	0
.......................................................................................................CGCCTTTTCTCCTGTCCC.........	18	0	7	0.14	1	0	1	0	0	0	0
......................................................................................................TCGCCTTTTCTCCTGTCCC.........	19	0	7	0.14	1	0	1	0	0	0	0
...........CCTGGTGCTCGCGCGTCCTCATGT...............................................................................................	24	2	8	0.13	1	0	1	0	0	0	0
.................GCTCGCGCGTCCTCATGT...............................................................................................	18	1	8	0.13	1	0	1	0	0	0	0
............CAGGTGCTCGCGCGTCCTCATGT...............................................................................................	23	2	8	0.13	1	0	1	0	0	0	0
.............TGGTGCTCGCGCGTCCTCATGT...............................................................................................	22	1	8	0.13	1	0	1	0	0	0	0
........AGGTCTGGTGCTCGCGCGTCCTCATGT...............................................................................................	27	1	8	0.13	1	0	1	0	0	0	0
.........GGTCTGGTTCTCGCGCGTCCTTATGT...............................................................................................	26	3	8	0.13	1	0	1	0	0	0	0
.......CAGGTCTGGTGTTCGCGCGTCCTCATGT...............................................................................................	28	2	8	0.13	1	0	1	0	0	0	0
...........TCTGGTGCTCGAGCGTCCTCATGT...............................................................................................	24	2	8	0.13	1	0	1	0	0	0	0
...............................................................................CGGCTTCTCTGCCGATGCTGCGGT...........................	24	0	17	0.12	2	2	0	0	0	0	0
..........GTCTGGTGCTCGCGCGTCCTCA..................................................................................................	22	0	9	0.11	1	1	0	0	0	0	0
......ACAGGTCTGGTGCTCGCGCGTCCTCAT.................................................................................................	27	0	9	0.11	1	1	0	0	0	0	0
...........CCTGGTGCTCGCGCGTCCTCTTGT...............................................................................................	24	3	9	0.11	1	0	1	0	0	0	0
...........CCTGGTGCTCGCGCGTCCTCAT.................................................................................................	22	1	9	0.11	1	0	1	0	0	0	0
.........CGTCTGGTGCTCGCGCGTCCTCTTGT...............................................................................................	26	3	9	0.11	1	0	1	0	0	0	0
..........TTCTGGTGCTCGCGCGTCCTCTTGT...............................................................................................	25	3	9	0.11	1	0	1	0	0	0	0
.........GTTCTGGTGCTCGCGCGTCCTCTTGT...............................................................................................	26	3	9	0.11	1	0	1	0	0	0	0
.........AGTCTGGTGCTCGCGCGTCCTCAT.................................................................................................	24	1	9	0.11	1	1	0	0	0	0	0
.......CAGGTCTGGTGCTCGCGCGTCCTCTTGT...............................................................................................	28	2	9	0.11	1	0	1	0	0	0	0
.........GGTGTGGTGCTCGCGCGTCCTCAT.................................................................................................	24	1	9	0.11	1	0	0	1	0	0	0
.........GGTCTGGTGCTCGCGCGTTCTCAT.................................................................................................	24	1	9	0.11	1	0	0	1	0	0	0
...........TCTGGTGCTCGCGCGTCCTCAT.................................................................................................	22	0	9	0.11	1	1	0	0	0	0	0
.........GGTCTGGTGCTCGCGCGTCCTCTTGT...............................................................................................	26	2	9	0.11	1	0	1	0	0	0	0
........AGGTCTGGTGCTCGCGCGTCCTCTTGT...............................................................................................	27	2	9	0.11	1	0	1	0	0	0	0
............................................GGCGGCCACTCTGACGGCAATGTG..............................................................	24	1	10	0.10	1	0	1	0	0	0	0
..........GTCTGGTGCTCGCGCGTCCTC...................................................................................................	21	0	10	0.10	1	1	0	0	0	0	0
............................................CGGCGCCACTCTGACGGCAAAGTG..............................................................	24	3	10	0.10	1	0	1	0	0	0	0
............................................GGCGTCCACTCTGACGGCAAAGGG..............................................................	24	2	10	0.10	1	0	1	0	0	0	0
...........................................CGGCGGCCACTCTGACGGCAATGTG..............................................................	25	1	10	0.10	1	0	1	0	0	0	0
............................................GGCGGCCACTCTGACGGCAAAGTGA.............................................................	25	1	10	0.10	1	1	0	0	0	0	0
..............................................CGGCCACTCTGACGGCAAACGG..............................................................	22	2	10	0.10	1	0	1	0	0	0	0
........................................CGACGGCGGCCACTCTGACGGCAAAGTG..............................................................	28	0	10	0.10	1	1	0	0	0	0	0
.............................................ACGGCCACTCTGACGGCAAAGT...............................................................	22	1	10	0.10	1	1	0	0	0	0	0
...........................................TTGCGGCCACTCTGACGGCAAAGTC..............................................................	25	3	10	0.10	1	1	0	0	0	0	0
..........................................ACGGCGGCCACTCTGACGGC....................................................................	20	0	10	0.10	1	1	0	0	0	0	0
......GCAGGTCTGCGGCTCGCGCGTC......................................................................................................	22	3	10	0.10	1	0	0	0	0	1	0
.AGGCCACAGGTCTGGTGCTCGCGCGTCCT....................................................................................................	29	1	10	0.10	1	1	0	0	0	0	0
.........................................CACGGCGGCCACTCTGACGGCAAAGTG..............................................................	27	1	10	0.10	1	1	0	0	0	0	0
..........................................ACGGCGGCCACTCTGACGGCAAAGTGT.............................................................	27	1	10	0.10	1	1	0	0	0	0	0
..............................................CGGCCACTCTGACGGCAAAGTT..............................................................	22	1	10	0.10	1	0	1	0	0	0	0
...........................................CGGCGGCCACTCTGACGGCAA..................................................................	21	0	10	0.10	1	0	1	0	0	0	0
...........................................CGGCGGCCACTCTGACGGCAAACTG..............................................................	25	1	10	0.10	1	0	1	0	0	0	0
..............................................CGGCCACTCTGACGGCAAAGT...............................................................	21	0	10	0.10	1	1	0	0	0	0	0
...........................................ATGCGGCCACTCTGACGGCAAAGTG..............................................................	25	2	10	0.10	1	1	0	0	0	0	0
....................................GCGCCGACGGCGGCCACTCT..........................................................................	20	0	10	0.10	1	1	0	0	0	0	0
..........................................ACGGCGGCCACTCTGACGGCAAAGGG..............................................................	26	1	10	0.10	1	0	1	0	0	0	0
.............................................GCGGCCACTCTGACGGCAAAGTGGGTGT.........................................................	28	0	10	0.10	1	1	0	0	0	0	0
.........GGTCTGGTGCTCGCGCGTCCTC...................................................................................................	22	0	10	0.10	1	0	0	1	0	0	0
...........................................GGGCGGCCACTCTGACGGCAAAGTG..............................................................	25	1	10	0.10	1	0	1	0	0	0	0
............................................GGCGGCCACTCTGACGGCAAA.................................................................	21	0	10	0.10	1	1	0	0	0	0	0
..........................................TTAGCGGCCACTCTGACGGCAAAGTG..............................................................	26	3	10	0.10	1	1	0	0	0	0	0
................................................GCCACTCTGACGGCAAAGTG..............................................................	20	0	10	0.10	1	0	1	0	0	0	0
........................................CGACGGCGGCCACTCTGACGGCAAAGT...............................................................	27	0	10	0.10	1	1	0	0	0	0	0
....CCACAGGTCTGGTGCTCGCGCGTCCT....................................................................................................	26	0	10	0.10	1	0	1	0	0	0	0
............................................GGCGCCCCCTCTGACGGCAAAGTG..............................................................	24	2	10	0.10	1	0	0	1	0	0	0
............................................CGCGGCCACTCTGACGGCAAAGTG..............................................................	24	1	10	0.10	1	0	1	0	0	0	0
..........................................TGGGCGGCCACTCTGACGGCAAAGTG..............................................................	26	2	10	0.10	1	0	0	1	0	0	0
.......................................CCGACGGCGGCCACTCTGACGGCAAAGTG..............................................................	29	0	10	0.10	1	1	0	0	0	0	0
............................................AGCGGCCACTCTGACGGCAAAGTG..............................................................	24	1	10	0.10	1	1	0	0	0	0	0
...................................................................................................CGGTCGCCTTTTCTGCTGAT...........	20	3	10	0.10	1	0	1	0	0	0	0
............................................GGCGGCCACTCTGACGGCAAATT...............................................................	23	1	10	0.10	1	0	1	0	0	0	0
....CCACAGGTCTGGTGCTCGCGCGTCC.....................................................................................................	25	0	10	0.10	1	1	0	0	0	0	0
............................................GGCGGCCACTCTGACGGCGAAGGG..............................................................	24	2	10	0.10	1	0	1	0	0	0	0
..........GTCTGGTGCTCGCGCGTCCT....................................................................................................	20	0	10	0.10	1	1	0	0	0	0	0
..........................................ACGGCGGCCACTCTGACGGCAAAGTGG.............................................................	27	0	10	0.10	1	1	0	0	0	0	0
..............................................CGGCCACTCTGACGGCAAAGTGGGT...........................................................	25	0	10	0.10	1	0	1	0	0	0	0
........................................................GACGGCAAAGTGGGTGTGGCC.....................................................	21	0	11	0.09	1	1	0	0	0	0	0
.................................................................GTGGGTGTGGCCGTCGGCTTCTCT.........................................	24	0	11	0.09	1	0	1	0	0	0	0
.....................................................TCTGACGGCAAAGTGGGTGT.........................................................	20	0	11	0.09	1	1	0	0	0	0	0
.................................................CCACTCTGACGGCAAAGTGGGTGTGGCC.....................................................	28	0	11	0.09	1	1	0	0	0	0	0
..............................................................AAAGTGGGTGTGGCCGTCGGCTTC............................................	24	0	11	0.09	1	1	0	0	0	0	0
....................................................CTCTGACGGCAAAGTGGGTGTGGGC.....................................................	25	1	11	0.09	1	0	1	0	0	0	0
.............................................................CAAAGTGGGTGTGGCCGTCGGCTTCT...........................................	26	0	11	0.09	1	0	1	0	0	0	0
...................................................CCTCTGACGGCAAAGTGGGTGTGGCC.....................................................	26	1	11	0.09	1	1	0	0	0	0	0
..................................................................TGGGTGTGGCCGTCGGCTTCTCT.........................................	23	0	11	0.09	1	0	1	0	0	0	0
........................................................TACGGCAAAGTGGGTGTGGCCGTCGGCT..............................................	28	1	11	0.09	1	1	0	0	0	0	0
.....................................................TCTGACGGCAAAGTGGGTGTGGCCGT...................................................	26	0	11	0.09	1	1	0	0	0	0	0
.....................................................TCTGACGGCAAAGTGGGTGTGCCC.....................................................	24	1	11	0.09	1	0	1	0	0	0	0
.............................................................CAAAGTGGGTGTGGCCGTCGGCTTC............................................	25	0	11	0.09	1	1	0	0	0	0	0
....................................................................GGTGTGGCCGTCGGCTTCTCTGCCGAT...................................	27	0	11	0.09	1	1	0	0	0	0	0
....................................................................GGTGTGGCCGTCGGCTTCTCTG........................................	22	0	11	0.09	1	1	0	0	0	0	0
........................................................AACGGCAAAGTGGGTGTGGCCGTCGGC...............................................	27	1	11	0.09	1	1	0	0	0	0	0
................................................................TGTGGGTGTGGCCGTCGGCTTCTCT.........................................	25	1	11	0.09	1	1	0	0	0	0	0
...........................................................GGCAAAGTGGGTGTGGCCGTCGGCT..............................................	25	0	11	0.09	1	0	0	1	0	0	0
...................................................ACTCTGACGGCAAAGTGGGTGTGGC......................................................	25	0	11	0.09	1	1	0	0	0	0	0
...................................................ACTCTGACGGCAAAGTGGGTGTGGCC.....................................................	26	0	11	0.09	1	1	0	0	0	0	0
......................................................................TGTGGCCGTCGGCTTCTCTGCCGAT...................................	25	0	11	0.09	1	1	0	0	0	0	0
.........................................................................GGCCGTCGGCTTCTCTGCCGATGCT................................	25	0	16	0.06	1	1	0	0	0	0	0
.........................................................................AGCCGTCGGCTTCTCTGCCGAT...................................	22	1	16	0.06	1	1	0	0	0	0	0
.........................................................................GGCCGTCGGCTTCTCTGCCGATGC.................................	24	0	16	0.06	1	1	0	0	0	0	0
................................................................................GGCTTCTCTGCCGATGCTGCGGT...........................	23	0	17	0.06	1	0	1	0	0	0	0
.............................................................................GTCGGCTTCTCTGCCGATGCTGCGGT...........................	26	0	17	0.06	1	1	0	0	0	0	0
..............................CATCTTGCGTCGAAGGCCG.................................................................................	19	3	20	0.05	1	1	0	0	0	0	0

GTGGCCACAGGTCTGGTGCTCGCGCGTCCTCATCTTGCGCCGACGGCGGCCACTCTGACGGCAAAGTGGGTGTGGCCGTCGGCTTCTCTGCCGATGCTGCGGTCGCCTTTTCTCCTGTCCCGTACCAGTG
**************************************************......((((((............))))))**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V041
embryo

V110
male body

V049
head

V056
head

.........GGTCTGGTGCTCGCGCGTCCTCATCT...............................................................................................

22.33

..........GTCTGGTGCTCGCGCGTCCTCATCT...............................................................................................

13.00

...............................................................................................GCTGCGGTCGCCTTTTCTCCTGTCCC.........

10.00

...........TCTGGTGCTCGCGCGTCCTCATCT...............................................................................................

8.33

................................................................................................CTGCGGTCGCCTTTTCTCCTGTCCC.........

8.00

............................................GGCGGCCACTCTGACGGCAAAGTG..............................................................

6.20

.................................................................................................TGCGGTCGCCTTTTCTCCTGTCCC.........

6.00

............CTGGTGCTCGCGCGTCCTCATCT...............................................................................................

5.33

...........................................CGGCGGCCACTCTGACGGCAAAGTG..............................................................

5.10

.......CAGGTCTGGTGCTCGCGCGTCCTCATCT...............................................................................................

3.33

..........................................ACGGCGGCCACTCTGACGGCAAAGTG..............................................................

2.60

...................................................................................................CGGTCGCCTTTTCTCCTGTCCC.........

2.00

...........CCTGGTGCTCGCGCGTCCTCATCT...............................................................................................

2.00

........AGGTCTGGTGCTCGCGCGTCCTCATCT...............................................................................................

2.00

.............................................GCGGCCACTCTGACGGCAAAGTG..............................................................

1.80

..............................................CGGCCACTCTGACGGCAAAGTG..............................................................

1.50

.........GGTCTGGTGCTCGCGCGTCCTCATC................................................................................................

1.25

.........GGTCTGGTGCTCGCGCGTCCTCAT.................................................................................................

1.22

...........TCTGGTGCTCGCGCGTCCTCATGT...............................................................................................

1.13

...............................................................................................GCTGCGGTCGCCTTTTCTCCTGTCC..........

1.00

................................................................................................CTGCGGTCGCCTTTTCTCCTGTCC..........

1.00

..............GGTGCTCGCGCGTCCTCATCT...............................................................................................

1.00

..........GTCTGGTGCTCGCGCGTCCTCAT.................................................................................................

0.78

.........GGTCTGGTGCTCGCGCGTCCTCATGT...............................................................................................

0.75

...........TCTGGTGCTCGCGCGTCCTCATC................................................................................................

0.75

...........................................CGGCGGCCACTCTGACGGCAAAGGG..............................................................

0.70

......ACAGGTCTGGTGCTCGCGCGTCCTCATCT...............................................................................................

0.67

....................................................CTCTGACGGCAAAGTGGGTGTGGCC.....................................................

0.55

...........CCTGGTGCTCGCGCGTCCTCATCTT..............................................................................................

0.50

.......CAGGTCTGGTGCTCGCGCGTCCTCATGT...............................................................................................

0.50

.........GGTCTGGTGCTCGCGCGTCCTCATCTT..............................................................................................

0.50

..........GTCTGGTGCTCGCGCGTCCTCATC................................................................................................

0.50

............CTGGTGCTCGCGCGTCCTCATGT...............................................................................................

0.50

............................................GGCGGCCACTCTGACGGCAAAGT...............................................................

0.50

.......CAGGTCTGGTGCTCGCGCGTCCTCATC................................................................................................

0.50

.......CAGGTCTGGTGCTCGCGCGTCCTCAT.................................................................................................

0.44

........AGGTCTGGTGCTCGCGCGTCCTCAT.................................................................................................

0.44

.....................................................................................................GTCGCCTTTTCTCCTGTCCC.........

0.43

..........................................ACGGCGGCCACTCTGACGGCAAAGT...............................................................

0.40

.....................................................TCTGACGGCAAAGTGGGTGTGGCC.....................................................

0.36

....................................................................................................GGTCGCCTTTTCTCCTGTCCC.........

0.33

.............TGGTGCTCGCGCGTCCTCATCT...............................................................................................

0.33

...........TCTGGTGCTCGCGCGTCCCCATCT...............................................................................................

0.33

.........GGTCTGGTGCTCGCGCGTCCTCA..................................................................................................

0.33

............CTGGTGCTCGCGCATCCTCATCT...............................................................................................

0.33

............CTGGGGCTCGCGCGTCCTCATCT...............................................................................................

0.33

.............CGGTGCTCGCGCGTCCTCATCT...............................................................................................

0.33

..........TTCTGGTGCTCGCGCGTCCTCATCT...............................................................................................

0.33

..........GCCTGGTGCTCGCGCGTCCTCATCT...............................................................................................

0.33

............................................GGCGGCCACTCTGACGGCAAAGGG..............................................................

0.30

...............................................GGCCACTCTGACGGCAAAGTG..............................................................

0.30

...........CCTGGTGCTCGCGCGTCCTCTTCT...............................................................................................

0.25

..........GTCTGGTGCTCGCGCGTCCTCATGT...............................................................................................

0.25

......GTAGGTCTGGTGCTCGCGCGTCCTCATC................................................................................................

0.25

...........TCTGGTGCTCGCGCGTCCTCTTCT...............................................................................................

0.25

..............................................CGGCCACTCTGACGGCAAAGGG..............................................................

0.20

...........................................CGGCGGCCACTCTGACGGCAAAGT...............................................................

0.20

............................................GGCGGCCACTCTGACGGCAAACTG..............................................................

0.20

.........................................GACGGCGGCCACTCTGACGGCAAAGTG..............................................................

0.20

...........................................TGGCGGCCACTCTGACGGCAAAGTG..............................................................

0.20

...........................................TTGCGGCCACTCTGACGGCAAAGTG..............................................................

0.20

..........................................................CGGCAAAGTGGGTGTGGCCGTCGGCT..............................................

0.18

............................................................GCAAAGTGGGTGTGGCCGTCGGCTTCT...........................................

0.18

....................................................................................................GGTCGCCTTTTCTCCTGCCCC.........

0.17

...............GTGCTCGCGCGGCCGGATCT...............................................................................................

0.17

.......................................................................................................CGCCTTTTCTCCTGTCCC.........

0.14

......................................................................................................TCGCCTTTTCTCCTGTCCC.........

0.14

...........CCTGGTGCTCGCGCGTCCTCATGT...............................................................................................

0.13

.................GCTCGCGCGTCCTCATGT...............................................................................................

0.13

............CAGGTGCTCGCGCGTCCTCATGT...............................................................................................

0.13

.............TGGTGCTCGCGCGTCCTCATGT...............................................................................................

0.13

........AGGTCTGGTGCTCGCGCGTCCTCATGT...............................................................................................

0.13

.........GGTCTGGTTCTCGCGCGTCCTTATGT...............................................................................................

0.13

.......CAGGTCTGGTGTTCGCGCGTCCTCATGT...............................................................................................

0.13

...........TCTGGTGCTCGAGCGTCCTCATGT...............................................................................................

0.13

...............................................................................CGGCTTCTCTGCCGATGCTGCGGT...........................

0.12

..........GTCTGGTGCTCGCGCGTCCTCA..................................................................................................

0.11

......ACAGGTCTGGTGCTCGCGCGTCCTCAT.................................................................................................

0.11

...........CCTGGTGCTCGCGCGTCCTCTTGT...............................................................................................

0.11

...........CCTGGTGCTCGCGCGTCCTCAT.................................................................................................

0.11

.........CGTCTGGTGCTCGCGCGTCCTCTTGT...............................................................................................

0.11

..........TTCTGGTGCTCGCGCGTCCTCTTGT...............................................................................................

0.11

.........GTTCTGGTGCTCGCGCGTCCTCTTGT...............................................................................................

0.11

.........AGTCTGGTGCTCGCGCGTCCTCAT.................................................................................................

0.11

.......CAGGTCTGGTGCTCGCGCGTCCTCTTGT...............................................................................................

0.11

.........GGTGTGGTGCTCGCGCGTCCTCAT.................................................................................................

0.11

.........GGTCTGGTGCTCGCGCGTTCTCAT.................................................................................................

0.11

...........TCTGGTGCTCGCGCGTCCTCAT.................................................................................................

0.11

.........GGTCTGGTGCTCGCGCGTCCTCTTGT...............................................................................................

0.11

........AGGTCTGGTGCTCGCGCGTCCTCTTGT...............................................................................................

0.11

............................................GGCGGCCACTCTGACGGCAATGTG..............................................................

0.10

..........GTCTGGTGCTCGCGCGTCCTC...................................................................................................

0.10

............................................CGGCGCCACTCTGACGGCAAAGTG..............................................................

0.10

............................................GGCGTCCACTCTGACGGCAAAGGG..............................................................

0.10

...........................................CGGCGGCCACTCTGACGGCAATGTG..............................................................

0.10

............................................GGCGGCCACTCTGACGGCAAAGTGA.............................................................

0.10

..............................................CGGCCACTCTGACGGCAAACGG..............................................................

0.10

........................................CGACGGCGGCCACTCTGACGGCAAAGTG..............................................................

0.10

.............................................ACGGCCACTCTGACGGCAAAGT...............................................................

0.10

...........................................TTGCGGCCACTCTGACGGCAAAGTC..............................................................

0.10

..........................................ACGGCGGCCACTCTGACGGC....................................................................

0.10

......GCAGGTCTGCGGCTCGCGCGTC......................................................................................................

0.10

.AGGCCACAGGTCTGGTGCTCGCGCGTCCT....................................................................................................

0.10

.........................................CACGGCGGCCACTCTGACGGCAAAGTG..............................................................

0.10

..........................................ACGGCGGCCACTCTGACGGCAAAGTGT.............................................................

0.10

..............................................CGGCCACTCTGACGGCAAAGTT..............................................................

0.10

...........................................CGGCGGCCACTCTGACGGCAA..................................................................

0.10

...........................................CGGCGGCCACTCTGACGGCAAACTG..............................................................

0.10

..............................................CGGCCACTCTGACGGCAAAGT...............................................................

0.10

...........................................ATGCGGCCACTCTGACGGCAAAGTG..............................................................

0.10

....................................GCGCCGACGGCGGCCACTCT..........................................................................

0.10

..........................................ACGGCGGCCACTCTGACGGCAAAGGG..............................................................

0.10

.............................................GCGGCCACTCTGACGGCAAAGTGGGTGT.........................................................

0.10

.........GGTCTGGTGCTCGCGCGTCCTC...................................................................................................

0.10

...........................................GGGCGGCCACTCTGACGGCAAAGTG..............................................................

0.10

............................................GGCGGCCACTCTGACGGCAAA.................................................................

0.10

..........................................TTAGCGGCCACTCTGACGGCAAAGTG..............................................................

0.10

................................................GCCACTCTGACGGCAAAGTG..............................................................

0.10

........................................CGACGGCGGCCACTCTGACGGCAAAGT...............................................................

0.10

....CCACAGGTCTGGTGCTCGCGCGTCCT....................................................................................................

0.10

............................................GGCGCCCCCTCTGACGGCAAAGTG..............................................................

0.10

............................................CGCGGCCACTCTGACGGCAAAGTG..............................................................

0.10

..........................................TGGGCGGCCACTCTGACGGCAAAGTG..............................................................

0.10

.......................................CCGACGGCGGCCACTCTGACGGCAAAGTG..............................................................

0.10

............................................AGCGGCCACTCTGACGGCAAAGTG..............................................................

0.10

...................................................................................................CGGTCGCCTTTTCTGCTGAT...........

0.10

............................................GGCGGCCACTCTGACGGCAAATT...............................................................

0.10

....CCACAGGTCTGGTGCTCGCGCGTCC.....................................................................................................

0.10

............................................GGCGGCCACTCTGACGGCGAAGGG..............................................................

0.10

..........GTCTGGTGCTCGCGCGTCCT....................................................................................................

0.10

..........................................ACGGCGGCCACTCTGACGGCAAAGTGG.............................................................

0.10

..............................................CGGCCACTCTGACGGCAAAGTGGGT...........................................................

0.10

........................................................GACGGCAAAGTGGGTGTGGCC.....................................................

0.09

.................................................................GTGGGTGTGGCCGTCGGCTTCTCT.........................................

0.09

.....................................................TCTGACGGCAAAGTGGGTGT.........................................................

0.09

.................................................CCACTCTGACGGCAAAGTGGGTGTGGCC.....................................................

0.09

..............................................................AAAGTGGGTGTGGCCGTCGGCTTC............................................

0.09

....................................................CTCTGACGGCAAAGTGGGTGTGGGC.....................................................

0.09

.............................................................CAAAGTGGGTGTGGCCGTCGGCTTCT...........................................

0.09

...................................................CCTCTGACGGCAAAGTGGGTGTGGCC.....................................................

0.09

..................................................................TGGGTGTGGCCGTCGGCTTCTCT.........................................

0.09

........................................................TACGGCAAAGTGGGTGTGGCCGTCGGCT..............................................

0.09

.....................................................TCTGACGGCAAAGTGGGTGTGGCCGT...................................................

0.09

.....................................................TCTGACGGCAAAGTGGGTGTGCCC.....................................................

0.09

.............................................................CAAAGTGGGTGTGGCCGTCGGCTTC............................................

0.09

....................................................................GGTGTGGCCGTCGGCTTCTCTGCCGAT...................................

0.09

....................................................................GGTGTGGCCGTCGGCTTCTCTG........................................

0.09

........................................................AACGGCAAAGTGGGTGTGGCCGTCGGC...............................................

0.09

................................................................TGTGGGTGTGGCCGTCGGCTTCTCT.........................................

0.09

...........................................................GGCAAAGTGGGTGTGGCCGTCGGCT..............................................

0.09

...................................................ACTCTGACGGCAAAGTGGGTGTGGC......................................................

0.09

...................................................ACTCTGACGGCAAAGTGGGTGTGGCC.....................................................

0.09

......................................................................TGTGGCCGTCGGCTTCTCTGCCGAT...................................

0.09

.........................................................................GGCCGTCGGCTTCTCTGCCGATGCT................................

0.06

.........................................................................AGCCGTCGGCTTCTCTGCCGAT...................................

0.06

.........................................................................GGCCGTCGGCTTCTCTGCCGATGC.................................

0.06

................................................................................GGCTTCTCTGCCGATGCTGCGGT...........................

0.06

.............................................................................GTCGGCTTCTCTGCCGATGCTGCGGT...........................

0.06

..............................CATCTTGCGTCGAAGGCCG.................................................................................

0.05

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6541:1341528-1341657 -	dmo_2217	CACCGGTGTCCAGACCACGAGCGCGCAGGAGTAGAACGCGGCTGCCGCCGGTGAGACTGCCGTTTCACCCACACCGGCAGCCGAAGAGACGGCTACGACGCCAGCGGAAAAGAGGACAGGGCATGGTCAC

Species

Coordinate

Alignment

droMoj3

scaffold_6541:1341528-1341657 -

dmo_2217

CACCGGTGTCCAGACCACGAGCGCGCAGGAGTAGAACGCGGCTGCCGCCGGTGAGACTGCCGTTTCACCCACACCGGCAGCCGAAGAGACGGCTACGACGCCAGCGGAAAAGAGGACAGGGCATGGTCAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

CACCGGTGTCCAGACCACGAGCGCGCAGGAGTAGAACGCGGCTGCCGCCGGTGAGACTGCCGTTTCACCCACACCGGCAGCCGAAGAGACGGCTACGACGCCAGCGGAAAAGAGGACAGGGCATGGTCAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................CAGGAGTAGAACGCGGCTGCC....................................................................................	21	3	0.67	2	1	0	0	0	1	0
...............................................................................................................GAGGACAGGGCATGGTCAC	19	9	0.56	5	4	0	0	0	1	0
.........................CAGGAGTAGAACGCGGCTGC.....................................................................................	20	3	0.33	1	0	0	0	0	1	0
...............................................................................................................GAGGACAGGGCATGGTCA.	18	9	0.33	3	2	1	0	0	0	0
.......................................................................................................GCGGAAAAGAGGACAGGGCATGGT...	24	7	0.29	2	1	0	0	0	1	0
..........................................................GCCGTTTCACCCACACCGGCAGC.................................................	23	11	0.27	3	2	0	0	0	1	0
............GACCACGAGCGCGCAGGAGTAG................................................................................................	22	4	0.25	1	1	0	0	0	0	0
...........AGACCACGAGCGCGCAGGAGTAG................................................................................................	23	4	0.25	1	1	0	0	0	0	0
.........................................................TGCCGTTTCACCCACACCGGCAGC.................................................	24	11	0.18	2	1	0	0	0	1	0
...................................................TGAGACTGCCGTTTCACCCAC..........................................................	21	11	0.18	2	1	0	0	0	1	0
..........................................................GCCGTTTCACCCACACCGGCAGCC................................................	24	11	0.18	2	2	0	0	0	0	0
..........................................................GCCGTTTCACCCACACCGGCAGCCGA..............................................	26	11	0.18	2	2	0	0	0	0	0
.......................................................................................................GCGGAAAAGAGGACAGGGCATGG....	23	7	0.14	1	0	0	0	0	1	0
............................................................................................................AAAGAGGACAGGGCATGGTC..	20	7	0.14	1	0	0	0	0	1	0
.......................................................................................................GCGGAAAAGAGGACAGGGC........	19	7	0.14	1	0	0	0	0	1	0
......................................................................................................AGCGGAAAAGAGGACAGGGC........	20	7	0.14	1	0	0	0	0	1	0
...............................................................................................................GAGGACAGGGCATGGTCAA	19	9	0.11	1	1	0	0	0	0	0
..........CAGACCACGAGCGCGCAGGAGT..................................................................................................	22	9	0.11	1	1	0	0	0	0	0
..........................................TGCCGCCGGTGAGACTGCCGTTTCAC..............................................................	26	10	0.10	1	0	0	0	0	1	0
.......GTCCAGACCACGAGCGCG.........................................................................................................	18	10	0.10	1	1	0	0	0	0	0
.....GTGTCCAGACCACGAGCGCG.........................................................................................................	20	10	0.10	1	1	0	0	0	0	0
........TCCAGACCACGAGCGCGCATT.....................................................................................................	21	10	0.10	1	1	0	0	0	0	0
...................................................................CCCACACCGGCAGCCGAAGAGAC........................................	23	11	0.09	1	0	0	0	0	1	0
..........................................................GCCGTTTCACCCACACCGGCAGCCGAAG............................................	28	11	0.09	1	1	0	0	0	0	0
.........................................................TGCCGTTTCACCCACACCGGCAGCCG...............................................	26	11	0.09	1	0	0	0	0	1	0
................................................................TCACCCACACCGGCAGCCGAAGAGACGG......................................	28	11	0.09	1	1	0	0	0	0	0
...................................................................CCCACACCGGCAGCCGAAG............................................	19	11	0.09	1	0	0	0	0	1	0
...............................................................TTCACCCACACCGGCAGCCGAAGAGA.........................................	26	11	0.09	1	1	0	0	0	0	0
..........................................................GCCGTTTCACCCACACCGG.....................................................	19	11	0.09	1	1	0	0	0	0	0
.............................................................GTTTCACCCACACCGGCAGCCG...............................................	22	11	0.09	1	1	0	0	0	0	0
........................................................................ACCGGCAGCCGAAGAGACGG......................................	20	11	0.09	1	1	0	0	0	0	0
...................................................................CCCACACCGGCAGCCGAAGAGACGG......................................	25	11	0.09	1	1	0	0	0	0	0
...............................................................TTCACCCACACCGGCAGCCGAAGA...........................................	24	11	0.09	1	1	0	0	0	0	0
...............................................................TTCACCCACACCGGCAGCCGAAGAG..........................................	25	11	0.09	1	1	0	0	0	0	0
...............................................................TTCACCCACACCGGCAGCCGAAGAGAC........................................	27	11	0.09	1	1	0	0	0	0	0
..........................................................GCCGTTTCACCCACACCGGCAGCCG...............................................	25	11	0.09	1	1	0	0	0	0	0
...................................................TGAGACTGCCGTTTCACCCACACCGG.....................................................	26	11	0.09	1	0	0	0	0	1	0
............................................................CGTTTCACCCACACCGGCAGC.................................................	21	11	0.09	1	0	0	0	0	1	0
...............................................................................................................GAGGACAGGGCATGGTTG.	18	14	0.07	1	1	0	0	0	0	0
................................................................................CCGAAGAGACGGCTACGACGCC............................	22	17	0.06	1	1	0	0	0	0	0

dmo_2217

scaffold_6541:1341578-1341607 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-7.2	-7.0