ID:

dmo_221

 Coordinate:

scaffold_6680:17294294-17294357 +

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.2 -29.0 -28.6

Flybase annnotation

intergenic

No Repeatable elements found

mature

  1. dmo_221  scaffold_6680:17294294-17294315 +
  2. dmo_220  scaffold_6680:17294678-17294699 +
star

  1. dmo_221  scaffold_6680:17294335-17294356 +
  2. dmo_220  scaffold_6680:17294719-17294740 +

Sense Strand Reads

TGATTTTAGAGTCTGTAAATGCCGTTATTAAAGATGTGGCGCAGAAGTTTGCAACTTAAACGATATCCCGCACTTGTCGCTGGCTATTGTGCAAGTCATCGTTAATGTTGCCGGATTCTGTGACCTATAGTACAACCACAAATAGTATTTATAAAATTGGTAGG

***********************************..(((((((((....(((((...((((((.....((((..(((...)))....)))).....))))))...)))))....))))))).))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V056

head

 M046

female body

 V049

head

 V110

male body		 M060

embryo

 V041

embryo
...........................................................................................CGGGTCATCGTTAATGTTGCCG................................................... 22 2 2 39601.00 79202 29419 31438 17000 1199 84 62
...........................................................................................CGGGTCATCGTTAATGTTGCC.................................................... 21 2 2 10736.50 21473 12502 1727 6823 256 146 19
...........................................................................................CGGGTCATCGTTGATGTTGCCG................................................... 22 3 4 4205.75 16823 8673 1134 6870 140 1 5
............................................................................................GGGTCATCGTTAATGTTGCCG................................................... 21 2 2 1624.00 3248 252 2794 167 30 4 1
...........................................................................................CGGGTCATCGTTAATGTTGCCGT.................................................. 23 3 2 1466.00 2932 1157 1000 625 95 52 3
...........................................................................................CGGGTCATCGTTAATGTTGC..................................................... 20 2 3 1161.33 3484 2016 176 1189 63 33 7
..................................................GCAACTTAAACGATATCCCGCA............................................................................................ 22 0 2 402.00 804 28 364 18 8 360 26
..........................................................................................GCGGGTCATCGTTAATGTTGCCG................................................... 23 2 2 326.50 653 338 39 171 81 0 24
...........................................................................................CGGGTCATCGTTAATGTTG...................................................... 19 2 3 315.33 946 483 169 237 55 2 0
...........................................................................................CGGGTCATCGTTAATGTTTCCG................................................... 22 3 2 307.00 614 122 26 459 7 0 0
...........................................................................................CGGGTCATCGTTAATGTTGCCT................................................... 22 3 3 245.33 736 291 80 318 6 40 1
............................................................................................GGGTCATCGTTAATGTTGCC.................................................... 20 2 2 207.00 414 143 160 91 20 0 0
...........................................................................................CGGGTCATCGTTAATGTTGCCGA.................................................. 23 3 3 202.67 608 292 129 164 10 13 0
...........................................................................................CGGGCCATCGTTAATGTTGCCG................................................... 22 3 2 194.50 389 294 13 73 7 1 1
...........................................................................................CGGGTCATCGTTAATGTTGCCC................................................... 22 3 2 185.50 371 205 15 113 3 29 6
...........................................................................................CGGGACATCGTTAATGTTGCCG................................................... 22 3 2 182.50 365 294 9 56 6 0 0
...........................................................................................CGGGTCATCGTTACTGTTGCCG................................................... 22 3 2 156.50 313 113 0 199 0 0 1
..................................................GCAACTTAAACGATATCCCGCAC........................................................................................... 23 0 2 113.50 227 3 50 1 1 170 2
...........................................................................................CGGGTCATCGTTAATGTT....................................................... 18 2 4 111.50 446 266 13 163 2 2 0
............................................................................................GGGTCATCGTTAATGTTGCCGT.................................................. 22 3 2 110.50 221 39 128 31 16 7 0
...........................................................................................CGGGTCATCGTTAATGTTTCC.................................................... 21 3 2 102.50 205 48 1 155 1 0 0
.............................................................................................GGTCATCGTTAATGTTGCCG................................................... 20 1 2 90.00 180 2 173 4 1 0 0
...........................................................................................CGGGTCATCGTTCATGTTGCCG................................................... 22 3 2 82.50 165 36 0 127 0 1 1
...........................................................................................CGGGTCATCGTTAATGCTGCCG................................................... 22 3 2 80.00 160 87 8 64 1 0 0
...........................................................................................CGGGTCATCGTTAATGTTGCCGC.................................................. 23 3 2 80.00 160 80 16 51 1 11 1
...........................................................................................CGAGTCATCGTTAATGTTGCCG................................................... 22 1 2 74.50 149 53 37 56 1 0 2
...........................................................................................CGGGTCATCGTGAATGTTGCCG................................................... 22 3 3 74.00 222 30 179 13 0 0 0
...........................................................................................CGGGTCATCGTTGATGTTGCC.................................................... 21 3 9 71.22 641 352 63 218 6 2 0
...........................................................................................CGGGTCATCGCTAATGTTGCCG................................................... 22 3 2 67.00 134 69 16 48 0 1 0
...........................................................................................CGGGTCATCGTTACTGTTGCC.................................................... 21 3 2 63.50 127 39 0 88 0 0 0
...........................................................................................CGGGGCATCGTTAATGTTGCCG................................................... 22 3 4 62.75 251 171 13 59 7 0 1
...........................................................................................CGGGACATCGTTAATGTTGCC.................................................... 21 3 3 57.00 171 154 0 17 0 0 0
...........................................................................................CAGGTCATCGTTAATGTTGCCG................................................... 22 1 2 55.00 110 36 17 54 3 0 0
...........................................................................................TGGGTCATCGTTAATGTTGCCG................................................... 22 3 4 52.50 210 162 15 33 0 0 0
...........................................................................................CGGGTCATCGTTAATCTTGCCG................................................... 22 3 2 50.50 101 58 15 28 0 0 0
...........................................................................................CGGGTCATCGGTAATGTTGCCG................................................... 22 3 2 50.00 100 43 8 49 0 0 0
...........................................................................................CGGGTCATCGTTAATGTTCCCG................................................... 22 3 2 48.00 96 63 9 18 4 2 0
...........................................................................................CGGGTCATCGTCAATGTTGCCG................................................... 22 3 2 47.50 95 37 36 22 0 0 0
...........................................................................................CGGGTCATCGTTAATGTTGCTG................................................... 22 3 3 45.67 137 107 6 24 0 0 0
...........................................................................................CGGGTCATCGTTAATGCTGCC.................................................... 21 3 2 40.50 81 47 0 33 0 0 1
..................................................GCAACTTAAACGATATCCCGC............................................................................................. 21 0 2 38.50 77 4 21 2 0 50 0
...........................................................................................CGGGTCATCGTAAATGTTGCCG................................................... 22 3 2 36.00 72 1 71 0 0 0 0
...........................................................................................CGGGTCATCGTTAATGATGCCG................................................... 22 3 2 36.00 72 52 1 18 0 1 0
...........................................................................................CGGGTCATCGTTAATGTGGCCG................................................... 22 3 2 35.50 71 48 0 23 0 0 0
...........................................................................................CGGGTCATCGTTAGTGTTGCCG................................................... 22 3 2 31.00 62 32 8 22 0 0 0
...........................................................................................CGGGTCATCGTTAATGTCGCCG................................................... 22 3 2 31.00 62 42 4 15 1 0 0
...........................................................................................CGGGTCATCGTTTATGTTGCCG................................................... 22 3 3 30.67 92 29 1 61 1 0 0
...........................................................................................CGGGTCGTCGTTAATGTTGCCG................................................... 22 3 3 30.67 92 44 8 36 3 0 1
...........................................................................................CGGGCCATCGTTAATGTTGCC.................................................... 21 3 5 30.00 150 123 1 24 2 0 0
...........................................................................................CGGGTCATCGTTAATGTTGCCA................................................... 22 3 3 29.67 89 34 12 41 2 0 0
...........................................................................................CGGGTCATCGTTAATTTTGCCG................................................... 22 3 3 29.33 88 39 15 31 3 0 0
...........................................................................................CGGGTCATCGTTAATGTTCCC.................................................... 21 3 2 29.00 58 41 3 13 0 1 0
...........................................................................................CGGGTCAGCGTTAATGTTGCCG................................................... 22 3 3 28.67 86 58 1 27 0 0 0
...........................................................................................CCGGTCATCGTTAATGTTGCCG................................................... 22 2 2 27.50 55 31 1 21 1 1 0
...........................................................................................AGGGTCATCGTTAATGTTGCCG................................................... 22 3 4 27.25 109 83 8 17 1 0 0
...........................................................................................CGGGTCATCGTTAATGTTACCG................................................... 22 3 2 26.50 53 32 1 20 0 0 0
...........................................................................................CGGGTAATCGTTAATGTTGCCG................................................... 22 3 2 25.50 51 45 0 5 1 0 0
...........................................................................................CGGGTCATCGTTAATCTTGCC.................................................... 21 3 2 25.50 51 38 0 13 0 0 0
...........................................................................................CAGGTCATCGTTAATGTTGCC.................................................... 21 1 2 24.50 49 17 0 30 0 1 1
...........................................................................................CGGGTCATCGTTAATGTTGT..................................................... 20 3 6 23.33 140 81 9 47 3 0 0
........................................................................CTTGTCGCTGGCTATTGTG......................................................................... 19 0 1 22.00 22 2 1 1 2 10 6
...........................................................................................CGGGTCATCGTTAATGGTGCCG................................................... 22 3 2 21.50 43 13 0 30 0 0 0
...........................................................................................CGGGTCATCGTTAATATTGCCG................................................... 22 3 2 21.50 43 18 4 20 0 1 0
...........................................................................................CGGGTCATCGTTAATGTTGCAG................................................... 22 3 4 20.25 81 56 4 20 0 0 1
...................................................CAACTTAAACGATATCCCGCA............................................................................................ 21 0 2 20.00 40 0 38 1 0 1 0
...........................................................................................CGGGTCATCGTTAATGTGGCC.................................................... 21 3 2 19.50 39 27 0 12 0 0 0
...........................................................................................CGGGTCATCGTTAATGTTGTCG................................................... 22 3 2 19.00 38 23 2 9 3 1 0
...........................................................................................CAGGTCATCGTTGATGTTGCCG................................................... 22 2 2 19.00 38 11 0 27 0 0 0
...........................................................................................CGCGTCATCGTTAATGTTGCCG................................................... 22 2 2 19.00 38 19 2 15 0 2 0
...........................................................................................CTGGTCATCGTTAATGTTGCCG................................................... 22 2 3 19.00 57 9 9 11 1 27 0
...........................................................................................CGTGTCATCGTTAATGTTGCCG................................................... 22 2 2 18.50 37 9 11 10 7 0 0
...........................................................................................CGGGTCATCGTTAATGTTGCCGG.................................................. 23 2 2 18.50 37 12 20 4 0 1 0
...........................................................................................CGGGTCCTCGTTAATGTTGCCG................................................... 22 3 2 18.00 36 10 1 25 0 0 0
...........................................................................................CAAGTCATCGTTAATGTTGCCG................................................... 22 0 2 18.00 36 11 7 14 0 3 1
...........................................................................................CGGGTCATCGTTAATGTCGCC.................................................... 21 3 3 18.00 54 35 1 17 1 0 0
...........................................................................................CGGCTCATCGTTAATGTTGCCG................................................... 22 3 5 17.80 89 50 3 34 1 0 1
...........................................................................................CGGGTCATCGTTAATTTTGCC.................................................... 21 3 4 17.50 70 31 1 38 0 0 0
...........................................................................................CGGGTTATCGTTAATGTTGCCG................................................... 22 3 2 17.00 34 19 3 12 0 0 0
...........................................................................................CGGGTCATCGTTAATGATGCC.................................................... 21 3 2 16.50 33 16 1 16 0 0 0
..........................................................................................GCGGGTCATCGTTGATGTTGCCG................................................... 23 3 2 16.00 32 16 2 12 2 0 0
...........................................................................................CGAGTCATCGTTAATGTTGCC.................................................... 21 1 2 15.50 31 16 0 13 0 2 0
..............................................................................................GTCATCGTTAATGTTGCCG................................................... 19 0 2 15.50 31 1 30 0 0 0 0
...........................................................................................CGGGTCATCATTAATGTTGCCG................................................... 22 3 3 15.33 46 16 2 28 0 0 0
...........................................................................................CGGGTCACCGTTAATGTTGCCG................................................... 22 3 3 15.00 45 26 4 14 1 0 0
...........................................................................................CGAGTCATCGTTGATGTTGCCG................................................... 22 2 2 14.00 28 16 0 11 1 0 0
..........................................................................................ACGGGTCATCGTTAATGTTGCCG................................................... 23 3 2 14.00 28 2 26 0 0 0 0
...........................................................................................CTGGTCATCGTTAATGTTGCC.................................................... 21 2 3 13.67 41 1 0 5 1 34 0
...........................................................................................CGGGTCATCGTTAATGTTGACG................................................... 22 3 3 12.67 38 22 4 12 0 0 0
...........................................................................................CGGGTCATCGTTAATGTTGCCGTA................................................. 24 3 2 12.00 24 10 7 5 0 2 0
...........................................................................................CGGGTCATCGTTAACGTTGCCG................................................... 22 3 4 12.00 48 27 3 18 0 0 0
...........................................................................................CGGGTCATCGTTAATGTTGTC.................................................... 21 3 2 12.00 24 12 0 11 0 1 0
...........................................................................................TGGGTCATCGTTAATGTTGCC.................................................... 21 3 7 11.57 81 67 0 13 0 1 0
...........................................................................................CGGGTCATCGGTAATGTTGCC.................................................... 21 3 3 11.33 34 15 0 19 0 0 0
...........................................................................................CGGGTCATCGTTAATGTTGCT.................................................... 21 3 4 11.25 45 27 0 17 0 1 0
............................................................................................GGGTCATCGTTAATGTTGC..................................................... 19 2 4 11.00 44 16 16 10 2 0 0
...........................................................................................GGGGTCATCGTTAATGTTGCCG................................................... 22 3 2 11.00 22 14 6 2 0 0 0
...........................................................................................CGGGTCATCGTTCATGTTGCC.................................................... 21 3 8 10.88 87 18 0 69 0 0 0
...........................................................................................CGCGTCATCGTTAATGTTGCC.................................................... 21 2 2 10.50 21 10 0 6 0 5 0
..........................................................................................TCGGGTCATCGTTAATGTTGCCG................................................... 23 3 2 10.50 21 0 21 0 0 0 0
...........................................................................................CGGGTCATCGTTAATGTTACC.................................................... 21 3 2 10.50 21 11 0 10 0 0 0
...........................................................................................CGGGTCATCGTTAATGGTGCC.................................................... 21 3 2 10.50 21 13 0 8 0 0 0
.......................................................................ACTTGTCGCTGGCTATTGTGC........................................................................ 21 0 1 10.00 10 0 0 0 1 9 0
...........................................................................................AGGGTCATCGTTAATGTTGCC.................................................... 21 3 4 10.00 40 33 0 7 0 0 0
...........................................................................................CGGGTCATCGATAATGTTGCCG................................................... 22 3 2 10.00 20 13 3 4 0 0 0
...........................................................................................CGGGTCATCGCTAATGTTGCC.................................................... 21 3 5 9.60 48 31 0 17 0 0 0
........................................................................CTTGTCGCTGGCTATTTTG......................................................................... 19 1 1 9.00 9 4 0 3 0 0 2
..................................................GCAACTTAAACGATGTCCCGCA............................................................................................ 22 1 2 9.00 18 2 10 3 1 2 0
..........................................................................................CCGGGTCATCGTTAATGTTGCCG................................................... 23 3 3 9.00 27 2 24 1 0 0 0
...........................................................................................CGGGTCATCCTTAATGTTGCCG................................................... 22 3 3 8.67 26 11 1 14 0 0 0
.........................................................................................TGCGGGTCATCGTTAATGTTGCCG................................................... 24 2 2 8.50 17 11 0 4 1 0 1
..................................................GGAACTTAAACGATATCCCGCA............................................................................................ 22 1 2 8.50 17 0 0 0 0 17 0
...........................................................................................CGGGTCATCGTTAATGTTTC..................................................... 20 3 5 7.80 39 8 0 31 0 0 0
............................................................................................GGGTCATCGTTAATGTTGCCGA.................................................. 22 3 5 7.80 39 12 20 4 2 1 0
...........................................................................................CGGGTCATCGTTAAGGTTGCCG................................................... 22 3 2 7.50 15 6 2 7 0 0 0
.............................................................................................GGTCATCGTTAATGTTGCCGT.................................................. 21 2 2 7.50 15 0 15 0 0 0 0
...........................................................................................CGGGTCATCGTTATTGTTGCCG................................................... 22 3 3 7.33 22 19 0 3 0 0 0
...........................................................................................CGGGTCATTGTTAATGTTGCCG................................................... 22 3 7 7.14 50 28 5 15 2 0 0
............................................................................................GGGTCATCGTTAATGTTGCCC................................................... 21 3 2 7.00 14 3 2 2 6 1 0
...........................................................................................CCGGTCATCGTTAATGTTGCC.................................................... 21 2 3 6.67 20 9 0 11 0 0 0
..........................................................................................GCGAGTCATCGTTAATGTTGCCG................................................... 23 1 2 6.50 13 3 0 2 3 1 4
...........................................................................................CGGGTCATCGTTAGTGTTGCC.................................................... 21 3 3 6.33 19 14 1 3 1 0 0
...........................................................................................CGGGTCATCGTCAATGTTGCC.................................................... 21 3 4 6.25 25 15 1 8 1 0 0
...........................................................................................CGGGTCAGCGTTAATGTTGCC.................................................... 21 3 4 6.25 25 17 0 8 0 0 0
...................................................CAACTTAAACGATATCCCGCAC........................................................................................... 22 0 2 6.00 12 0 9 1 0 2 0
...........................................................................................CGGGTAATCGTTAATGTTGCC.................................................... 21 3 3 6.00 18 16 0 2 0 0 0
..........................................................................................GCGGGTCATCGTTACTGTTGCCG................................................... 23 3 2 6.00 12 1 0 11 0 0 0
.............................................................................................GGTCATCGTTAATGTTGCC.................................................... 19 1 2 6.00 12 0 12 0 0 0 0
...........................................................................................CGGGTCATCGTGAATGTTGCC.................................................... 21 3 3 6.00 18 9 6 3 0 0 0
...........................................................................................CGGGTCATCGTTTATGTTGCC.................................................... 21 3 4 5.75 23 9 0 13 1 0 0
...........................................................................................CGGGTCATCGTTAATGTTGCA.................................................... 21 3 5 5.60 28 20 0 8 0 0 0
...........................................................................................CAGGTCATCGTTAATGTTGC..................................................... 20 1 2 5.50 11 5 0 4 1 1 0
..................................................GCAACTTAAACGATATCCCG.............................................................................................. 20 0 2 5.50 11 3 3 2 2 1 0
..........................................................................................GCGGGTCATCGTTAATGTTTCCG................................................... 23 3 2 5.50 11 1 0 10 0 0 0
...........................................................................................CGAGACATCGTTAATGTTGCCG................................................... 22 2 2 5.50 11 10 0 1 0 0 0
...........................................................................................CGGGTCATCGTTAATATTGCC.................................................... 21 3 5 5.00 25 12 0 13 0 0 0
...........................................................................................CAAGTCATCGTTAATGTTGCC.................................................... 21 0 2 5.00 10 3 0 3 0 4 0
..........................................................................................GCGGGTCATCGTTAATGTTGCC.................................................... 22 2 2 5.00 10 1 3 0 1 4 1
...........................................................................................CGGGCCATCGTTAATGTTGC..................................................... 20 3 6 5.00 30 25 0 5 0 0 0
...............................................................................................TCATCGTTAATGTTGCCG................................................... 18 0 2 5.00 10 3 7 0 0 0 0
...........................................................................................CGAGTCATCGTTAATGTTGC..................................................... 20 1 2 5.00 10 9 0 1 0 0 0
...........................................................................................CGGGTCATCGTTAATGTTGAC.................................................... 21 3 5 4.80 24 14 0 5 0 5 0
...........................................................................................CGGGTCGTCGTTAATGTTGCC.................................................... 21 3 5 4.80 24 18 0 6 0 0 0
...........................................................................................CGGGTCATCGTAAATGTTGCC.................................................... 21 3 2 4.50 9 3 5 1 0 0 0
..................................................GGAACTTAAACGATATCCCGCAC........................................................................................... 23 1 2 4.50 9 0 0 0 0 9 0
...........................................................................................CGGGTCATCATTAATGTTGCC.................................................... 21 3 5 4.40 22 11 0 11 0 0 0
...........................................................................................CGGGTCTTCGTTAATGTTGCCG................................................... 22 3 3 4.00 12 5 1 5 1 0 0
..................................................GCATCTTAAACGATATCCCGCA............................................................................................ 22 1 2 4.00 8 0 0 0 0 8 0
...........................................................................................CGGGTCATCGTTAAAGTTGCCG................................................... 22 3 3 4.00 12 4 6 2 0 0 0
...........................................................................................CGGGTCACCGTTAATGTTGCC.................................................... 21 3 3 4.00 12 9 0 3 0 0 0
...........................................................................................CGGGTCATCCTTAATGTTGCC.................................................... 21 3 4 4.00 16 10 0 6 0 0 0
...........................................................................................CTGGTCATCGTTAATGTTGCCGT.................................................. 23 3 3 4.00 12 0 0 0 0 12 0
.........................................................................................TGCGGGTCATCGTTAATGTTG...................................................... 21 2 2 4.00 8 4 0 3 1 0 0
..................................................GCAACTTAAACGATATCCCGCAT........................................................................................... 23 1 2 4.00 8 2 6 0 0 0 0
...........................................................................................CGAGTCATCGTTAATGTTGCCGT.................................................. 23 2 2 3.50 7 4 0 2 0 1 0
.............................................................................................CGTCATCGTTAATGTTGCCG................................................... 20 1 2 3.50 7 1 2 2 2 0 0
..................................................GCAACTTAAACGATATCCCGCAA........................................................................................... 23 1 2 3.50 7 0 1 0 1 5 0
...........................................................................................CGAGACATCGTTAATGTTGCC.................................................... 21 2 2 3.50 7 6 0 1 0 0 0
...........................................................................................CGTGTCATCGTTAATGTTGCC.................................................... 21 2 2 3.50 7 2 0 3 1 1 0
............................................................................................GAGTCATCGTTAATGTTGCCG................................................... 21 1 2 3.50 7 1 6 0 0 0 0
...........................................................................................CGGGACATCGTTAATGTTGC..................................................... 20 3 10 3.40 34 24 0 9 0 1 0
............................................................................................GGGTCATCGTTAATGTTGCCGC.................................................. 22 3 3 3.33 10 4 2 2 0 2 0
............................................................................................GGGTCATCGTTAATGTTGCCT................................................... 21 3 5 3.20 16 5 7 4 0 0 0
............................................................................................GGGTCATCGTTAATGTTG...................................................... 18 2 8 3.13 25 6 14 5 0 0 0
........................................................................CGTGTCGCTGGCTATTGTG......................................................................... 19 1 1 3.00 3 0 0 0 0 3 0
...........................................................................................CGAGGCATCGTTAATGTTGCCG................................................... 22 2 2 3.00 6 4 0 2 0 0 0
...........................................................................................CGAGCCATCGTTAATGTTGCCG................................................... 22 2 2 3.00 6 6 0 0 0 0 0
..................................................GCATCTTAAACGATATCCCGCAC........................................................................................... 23 1 2 3.00 6 0 0 0 0 6 0
..................................................GTAACTTAAACGATATCCCGCA............................................................................................ 22 1 2 3.00 6 2 0 0 0 4 0
...........................................................................................CGAGTCATCGTTAATGTTGCCC................................................... 22 2 2 3.00 6 2 0 4 0 0 0
...........................................................................................CGGGTCTTCGTTAATGTTGCC.................................................... 21 3 3 3.00 9 5 0 4 0 0 0
...........................................................................................CGGTTCATCGTTAATGTTGCCG................................................... 22 3 4 3.00 12 1 9 0 1 1 0
...........................................................................................CGGGTCATCGTTAATGTAGCCG................................................... 22 3 3 3.00 9 6 2 1 0 0 0
.........................................................................................TGCGGGTCATCGTTAATGTTGC..................................................... 22 2 2 3.00 6 1 0 4 1 0 0
...........................................................................................CGGGTCATTGTTAATGTTGCC.................................................... 21 3 10 2.90 29 19 0 10 0 0 0
...........................................................................................CGGGTCCTCGTTAATGTTGCC.................................................... 21 3 4 2.75 11 5 0 6 0 0 0
...........................................................................................CCGGTCATCGTTGATGTTGCCG................................................... 22 3 4 2.75 11 4 0 7 0 0 0
...........................................................................................CGGGTCATCGTTAATGTAGCC.................................................... 21 3 3 2.67 8 6 0 2 0 0 0
...........................................................................................CTGGTCATCGTTAATGTTGCCGC.................................................. 23 3 3 2.67 8 0 0 0 0 8 0
............................................................................................GGGTCATCGTTAATGTTGCCGTA................................................. 23 3 2 2.50 5 1 3 1 0 0 0
..................................................GCAACTTAAACGATATCC................................................................................................ 18 0 2 2.50 5 0 1 0 0 4 0
............................................................................................GGGTCATCGTTAATGTTGCCGG.................................................. 22 2 2 2.50 5 0 5 0 0 0 0
...........................................................................................CAGGACATCGTTAATGTTGCCG................................................... 22 2 2 2.50 5 4 0 1 0 0 0
..........................................................................................GCGGGGCATCGTTAATGTTGCCG................................................... 23 3 4 2.50 10 7 0 2 1 0 0
...........................................................................................CGGGTCATCGTTAATGTTGGCG................................................... 22 3 2 2.50 5 3 1 1 0 0 0
...........................................................................................CGAGTCATCGTTAATGTTGCCT................................................... 22 2 2 2.50 5 0 0 2 0 2 1
...........................................................................................CGGGTCATCGATAATGTTGCC.................................................... 21 3 4 2.50 10 8 0 2 0 0 0
...........................................................................................CGCGTCATCGTTAATGTTGCCT................................................... 22 3 2 2.50 5 2 0 1 0 2 0
...........................................................................................CGGGTTATCGTTAATGTTGCC.................................................... 21 3 4 2.50 10 6 0 4 0 0 0
...........................................................................................CGGGTCATCGTTAATGCTGC..................................................... 20 3 7 2.43 17 9 0 8 0 0 0
...........................................................................................CGGGTCATCGTTACTGTTGC..................................................... 20 3 7 2.43 17 6 0 11 0 0 0
...........................................................................................CGGGTGATCGTTAATGTTGCCG................................................... 22 3 4 2.25 9 5 2 2 0 0 0
...........................................................................................CGGGTCATCGTTAAGGTTGCC.................................................... 21 3 4 2.25 9 8 0 1 0 0 0
...........................................................................................CTGGTCATCGTTAATGTTGCCT................................................... 22 3 5 2.20 11 0 0 2 0 9 0
............................................................................................GGGTCATCGTTAATGTTTCCG................................................... 21 3 2 2.00 4 1 2 1 0 0 0
...........................................................................................CAGGTCATCGTTAATGTTGCCGT.................................................. 23 2 2 2.00 4 0 0 4 0 0 0
....................................................AACTTAAACGATATCCCGCACT.......................................................................................... 22 0 2 2.00 4 2 0 0 0 2 0
...........................................................................................CTTGTCATCGTTAATGTTGCCG................................................... 22 2 2 2.00 4 3 0 1 0 0 0
...........................................................................................CGCGTCATCGTTAATGTTGCCGT.................................................. 23 3 2 2.00 4 1 0 1 0 2 0
...........................................................................................CAGGTCATCGTTACTGTTGCCG................................................... 22 2 2 2.00 4 1 0 3 0 0 0
...........................................................................................CGAGGCATCGTTAATGTTGCC.................................................... 21 2 2 2.00 4 3 0 1 0 0 0
...........................................................................................CAAGTCATCGTTAATGTTGCCT................................................... 22 1 2 2.00 4 1 0 2 0 1 0
...........................................................................................CGGGTCATCGTTAATGTTCC..................................................... 20 3 3 2.00 6 4 1 1 0 0 0
.......................................................................AGTTGTCGCTGGCTATTGTGC........................................................................ 21 1 1 2.00 2 0 0 0 0 2 0
..........................................................................................GCGGGTCATCGCTAATGTTGCCG................................................... 23 3 2 2.00 4 1 0 3 0 0 0
...........................................................................................CGAGTCATCGTTAATGTTG...................................................... 19 1 2 2.00 4 1 2 1 0 0 0
...........................................................................................CAAGTCATCGTTGATGTTGCCG................................................... 22 1 2 2.00 4 1 0 3 0 0 0
..................................................GCAACTTAAACGATATCCC............................................................................................... 19 0 2 2.00 4 0 0 0 0 4 0
............................................................................................AAGTCATCGTTAATGTTGCCG................................................... 21 0 2 2.00 4 0 3 1 0 0 0
...........................................................................................CGCGTCATCGTTAATGTTTCCG................................................... 22 3 2 2.00 4 2 0 2 0 0 0
...........................................................................................CGAGTCATCGTTAATGTTTCC.................................................... 21 2 2 2.00 4 2 0 2 0 0 0
..................................................GCAACTTAAACGATATCCCGCACC.......................................................................................... 24 1 2 2.00 4 0 1 0 0 3 0
.......................................................................ACTTGTCGCTGGCTAATGTGC........................................................................ 21 1 1 2.00 2 1 0 0 0 0 1
..........................................................................................GCGGGCCATCGTTAATGTTGCCG................................................... 23 3 2 2.00 4 1 0 2 1 0 0
...........................................................................................CGGGTCATGGTTAATGTTGCCG................................................... 22 3 3 2.00 6 3 1 2 0 0 0
..........................................................................................GCGGGTCATCGTTCATGTTGCCG................................................... 23 3 2 2.00 4 0 0 3 0 0 1
..................................................TCAACTTAAACGATATCCCGCA............................................................................................ 22 1 2 2.00 4 0 1 0 0 3 0
...........................................................................................CGGGTCATCGTTAATGT........................................................ 17 2 12 1.75 21 21 0 0 0 0 0
...........................................................................................CGCGTCATCGTTGATGTTGCCG................................................... 22 3 6 1.67 10 8 0 2 0 0 0
..........................................................................................GCGGGTCATCGTTAATGTTGCCT................................................... 23 3 3 1.67 5 1 0 3 0 1 0
............................................................................................CGGTCATCGTTAATGTTGCC.................................................... 20 2 3 1.67 5 2 0 3 0 0 0
...........................................................................................CGGGTCATGGTTAATGTTGCC.................................................... 21 3 3 1.67 5 3 0 2 0 0 0
...........................................................................................CGGGTCATCGTTAATGTTGA..................................................... 20 3 9 1.56 14 9 1 4 0 0 0
..........................................................................................GTGGGTCATCGTTAATGTTGCCG................................................... 23 3 2 1.50 3 2 1 0 0 0 0
...........................................................................................CGGGTCATCGTTGATGTTGCCGG.................................................. 23 3 2 1.50 3 0 3 0 0 0 0
...........................................................................................CAGGTCATCGTTAATGTTTCCG................................................... 22 2 2 1.50 3 0 0 3 0 0 0
...........................................................................................TCGGTCATCGTTAATGTTGCCG................................................... 22 3 2 1.50 3 1 0 2 0 0 0
.................................................CGCAACTTAAACGATATCCCGCA............................................................................................ 23 1 2 1.50 3 0 0 0 0 3 0
...........................................................................................CGAGTCATCGTTAATGCTGCCG................................................... 22 2 2 1.50 3 2 0 1 0 0 0
..................................................GCAACTTAAACGATGTCCCGC............................................................................................. 21 1 2 1.50 3 0 3 0 0 0 0
..........................................................................................GCGGGTCATCGTTAATGTTGCCGT.................................................. 24 3 2 1.50 3 1 2 0 0 0 0
...........................................................................................CAGGACATCGTTAATGTTGCC.................................................... 21 2 2 1.50 3 2 0 1 0 0 0
...........................................................................................CGAGTCATCGTTGATGTTTCCG................................................... 22 3 2 1.50 3 0 0 3 0 0 0
..........................................................................................GCGGGTCATCGTTAATGTTGCCC................................................... 23 3 2 1.50 3 2 0 0 0 1 0
...........................................................................................CGGGTCATCGTTAATTTTGC..................................................... 20 3 10 1.50 15 7 0 7 0 1 0
...........................................................................................CGAATCATCGTTAATGTTGCCG................................................... 22 2 2 1.50 3 1 0 2 0 0 0
...........................................................................................CAGGCCATCGTTAATGTTGCCG................................................... 22 2 2 1.50 3 3 0 0 0 0 0
............................................................................................CGGTCATCGTTAATGTTGCCG................................................... 21 2 2 1.50 3 1 0 2 0 0 0
...........................................................................................CAGGTCATCGTTAATGTTGCCC................................................... 22 2 2 1.50 3 0 0 0 0 3 0
...........................................................................................CGAGTCATCGTTAATATTGCCG................................................... 22 2 2 1.50 3 0 0 3 0 0 0
............................................................................................GGGTCATCGTTAGTGTTGCCG................................................... 21 3 2 1.50 3 0 2 1 0 0 0
...........................................................................................CAAGTCATCGTTAATGTTGC..................................................... 20 0 2 1.50 3 1 0 1 1 0 0
...........................................................................................CGCGTCATCGTTAATGTTCCCG................................................... 22 3 2 1.50 3 2 0 1 0 0 0
............................................................................................GGGTCATCGTTAATGTTTCC.................................................... 20 3 2 1.50 3 1 0 2 0 0 0
...........................................................................................CGAGTCATCGTTAATGCTGCC.................................................... 21 2 2 1.50 3 0 0 3 0 0 0
............................................................................................GTGTCATCGTTAATGTTGCCG................................................... 21 2 2 1.50 3 0 1 2 0 0 0
...........................................................................................CGAGTCATCGTTAATTTTGCC.................................................... 21 2 2 1.50 3 2 0 1 0 0 0
...................................................CAACTTAAACGATATCCCGC............................................................................................. 20 0 2 1.50 3 0 3 0 0 0 0
...........................................................................................AGAGTCATCGTTAATGTTGCCG................................................... 22 2 2 1.50 3 3 0 0 0 0 0
............................................................................................GGGTCATCGTTAATGGTGCCG................................................... 21 3 2 1.50 3 2 1 0 0 0 0
...........................................................................................CCGGTCATCGTTAATGTTCCCG................................................... 22 3 2 1.50 3 2 0 1 0 0 0
...........................................................................................CGAGTCATCGTTAATGTTCCC.................................................... 21 2 2 1.50 3 3 0 0 0 0 0
..........................................................................................GAGGGTCATCGTTAATGTTGCCG................................................... 23 3 2 1.50 3 1 0 1 0 0 1
...........................................................................................CAGGTCATCGTTAATGTTG...................................................... 19 1 2 1.50 3 1 0 2 0 0 0
....................................................AACTTAAACGATATCCCGCAC........................................................................................... 21 0 2 1.50 3 0 1 0 0 2 0
..................................................GCAACTTAAACGATATCCCGCC............................................................................................ 22 1 2 1.50 3 0 0 2 0 1 0
...........................................................................................CGGGTCATCGGTAATGTTGC..................................................... 20 3 5 1.40 7 5 0 2 0 0 0
...........................................................................................CGGGTCATCGCTAATGTTGC..................................................... 20 3 9 1.33 12 6 0 6 0 0 0
...........................................................................................CGTGTCATCGTTAATGTTTCCG................................................... 22 3 3 1.33 4 1 0 3 0 0 0
...........................................................................................CGGGTCATCGTTAATGTCGC..................................................... 20 3 7 1.29 9 6 1 2 0 0 0
...........................................................................................CGGGTCATCGTTAATGTTGG..................................................... 20 3 8 1.25 10 9 0 1 0 0 0
...........................................................................................GGGGTCATCGTTAATGTTGCC.................................................... 21 3 6 1.17 7 6 0 1 0 0 0
............................................................................................GGGGCATCGTTAATGTTGCCG................................................... 21 3 6 1.17 7 4 2 1 0 0 0
...........................................................................................CGGGTCATCGTTAATCTTGC..................................................... 20 3 6 1.17 7 5 0 2 0 0 0
..................................................GCAACTTCAACGATATCCCGCAC........................................................................................... 23 1 2 1.00 2 0 0 0 0 2 0
............................................................................................GGGTCATCGTTAATGTTACCG................................................... 21 3 2 1.00 2 1 0 1 0 0 0
...........................................................................................CGAGTCATCGTTAATGTTGCCGA.................................................. 23 2 2 1.00 2 0 0 2 0 0 0
...........................................................................................CAGGTCATCGTTAATGTT....................................................... 18 1 2 1.00 2 0 0 2 0 0 0
...........................................................................................CTGGTCATCGTTAATGTTGCCC................................................... 22 3 3 1.00 3 0 0 0 0 3 0
.......................................................................ATTTGTCGCTGGCTATTGTGC........................................................................ 21 1 1 1.00 1 0 0 0 0 1 0
...........................................................................................CAGGTCATCGTTGATGTTGCC.................................................... 21 2 2 1.00 2 0 0 2 0 0 0
...........................................................................................CGAGACATCGTTAATCTTGCCG................................................... 22 3 2 1.00 2 2 0 0 0 0 0
..................................................GCAACTTGAACGATATCCCGC............................................................................................. 21 1 2 1.00 2 0 0 0 0 2 0
...........................................................................................CCAGTCATCGTTAATGTTGCCG................................................... 22 1 2 1.00 2 2 0 0 0 0 0
...........................................................................................CAAGTCATCGTTAATGTTGCCGA.................................................. 23 1 2 1.00 2 0 0 0 0 2 0
..........................................................................................GCAAGTCATCGTTAATGTTGCCG................................................... 23 0 2 1.00 2 0 0 0 0 2 0
...........................................................................................CAAGTCATCGTTAATGTTGCCGC.................................................. 23 1 2 1.00 2 0 0 0 0 2 0
...........................................................................................CATGACATCGTTAATGTTGCC.................................................... 21 2 2 1.00 2 2 0 0 0 0 0
...........................................................................................CAAGGCATCGTTAATGTTGCCG................................................... 22 1 2 1.00 2 2 0 0 0 0 0
...........................................................................................CGCGACATCGTTAATGTTGCCG................................................... 22 3 3 1.00 3 1 0 2 0 0 0
...........................................................................................CCAGTCATCGTTGATGTTGCCG................................................... 22 2 2 1.00 2 1 0 1 0 0 0
..................................................GTAACTTAAACGATATCCCGCAC........................................................................................... 23 1 2 1.00 2 0 0 0 0 2 0
..................................................GCCACTTAAACGATATCCCGCA............................................................................................ 22 1 2 1.00 2 0 0 0 0 2 0
...........................................................................................CGAGACATCGTTAATGTTGCCT................................................... 22 3 2 1.00 2 2 0 0 0 0 0
..................................................GCAACTTAAACGAGATCCCGCA............................................................................................ 22 1 2 1.00 2 0 0 1 0 1 0
.........................................................................TTGTCGCTGGCTATTGTG......................................................................... 18 0 1 1.00 1 0 0 0 0 0 1
.............................................................................................GGTCATCGTTAGTGTTGCCG................................................... 20 2 2 1.00 2 0 2 0 0 0 0
..................................................GCAACTTAAACGATATCCCGT............................................................................................. 21 1 2 1.00 2 1 0 0 1 0 0
...........................................................................................CGAGACATCGTTAATGTTTCCG................................................... 22 3 2 1.00 2 1 0 1 0 0 0
...........................................................................................CGAGCCATCGTTAATGTTTCCG................................................... 22 3 2 1.00 2 1 0 1 0 0 0
...........................................................................................CGAGACATCGATAATGTTGCCG................................................... 22 3 2 1.00 2 2 0 0 0 0 0
...........................................................................................CGAGTCATCGTTAATGTCGCCG................................................... 22 2 2 1.00 2 1 0 1 0 0 0
...........................................................................................CGAGTCATCGTTAATGTTTCCG................................................... 22 2 2 1.00 2 1 0 1 0 0 0
...........................................................................................CAAGTCATCGTTAATCTTGCCG................................................... 22 1 2 1.00 2 2 0 0 0 0 0
...........................................................................................CGAGTCATCGTTAATGTTCCCG................................................... 22 2 2 1.00 2 2 0 0 0 0 0
...........................................................................................CGGGTCATCGTTAATGTTGCCGGG................................................. 24 3 2 1.00 2 0 2 0 0 0 0
............................................................................................GGGACATCGTTAATGTTGCCG................................................... 21 3 4 1.00 4 3 0 1 0 0 0
...........................................................................................CAGGGCATCGTTAATGTTGCCG................................................... 22 2 2 1.00 2 1 0 1 0 0 0
.........................................................................................TGCGGGTCATCGTTAATGTTGCC.................................................... 23 2 2 1.00 2 1 0 0 0 0 1
...........................................................................................CAAGTCATCGTTAATGTTGCCC................................................... 22 1 2 1.00 2 0 0 1 0 1 0
...........................................................................................CGCGTCATCGTTAATCTTGCCG................................................... 22 3 3 1.00 3 3 0 0 0 0 0
....................................................................................TATTGTGCGGGTCATCGTTAATG......................................................... 23 2 1 1.00 1 0 0 0 1 0 0

Anti-sense strand reads

ACTAAAATCTCAGACATTTACGGCAATAATTTCTACACCGCGTCTTCAAACGTTGAATTTGCTATAGGGCGTGAACAGCGACCGATAACACGTTCAGTAGCAATTACAACGGCCTAAGACACTGGATATCATGTTGGTGTTTATCATAAATATTTTAACCATCC

************************************..(((((((((....(((((...((((((.....((((..(((...)))....)))).....))))))...)))))....))))))).))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V056

head

 V049

head

 M060

embryo
..................................................CGTTGTAATTGCTACAGGGC.............................................................................................. 20 3 10 3.40 34 24 9 1
..................................................CGTTGTATTTGCTACAGGGC.............................................................................................. 20 2 2 2.00 4 3 1 0
.................................................CCGTTGTATTTGCTACAGGGC.............................................................................................. 21 3 4 1.50 6 2 4 0
.................................................ACGTTGTAATTGCTACAGGGC.............................................................................................. 21 3 2 1.50 3 2 1 0
..................................................CGTTGTATTTGCTACTGGGC.............................................................................................. 20 3 13 0.54 7 5 2 0
................................................ACCGTTGGATTTGCTATCGGGC.............................................................................................. 22 3 2 0.50 1 0 1 0
................................................TACGTTGTATTTGCTAGAGGGC.............................................................................................. 22 3 2 0.50 1 0 1 0
.................................................TCGTTGTATTTGCTACAGGGC.............................................................................................. 21 3 5 0.40 2 2 0 0
.................................................ACGTTGTATTTGCTACTGGGC.............................................................................................. 21 3 3 0.33 1 0 1 0
...................................................GTTGTAATTGCTACAGGGC.............................................................................................. 19 3 15 0.27 4 3 1 0
.................................................ACGTTGTAGTTGCTACAGGGC.............................................................................................. 21 3 4 0.25 1 0 1 0
.................................................CCGTTGCATTTGCTACAGGGC.............................................................................................. 21 3 4 0.25 1 1 0 0
.................................................TCGTTGTATTTGCTAGAGGGC.............................................................................................. 21 3 4 0.25 1 1 0 0
.................................................CCGTTGAAATTGCTACAGGGC.............................................................................................. 21 3 5 0.20 1 1 0 0
...................................................GTTGTATTGGCTAGAGGGC.............................................................................................. 19 3 8 0.13 1 1 0 0
..................................................CGTTGTACTTGCTACAGGGC.............................................................................................. 20 3 8 0.13 1 1 0 0
..................................................CGTTGTAATTGCTATTGGGC.............................................................................................. 20 3 9 0.11 1 1 0 0
..................................................CGTTGTATTTGCTAGACGGC.............................................................................................. 20 3 9 0.11 1 1 0 0
...................................................GGTGTATTTGCTAGAGGGC.............................................................................................. 19 3 15 0.07 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6680:17294244-17294407 + dmo_221 confident TGAT-TTTAGAGTCTGTAAATGCCGTTATTAAAGA---TGTGGCGCAGAAGTTTGCAACTTAAACGATATCCCGCACTTGTCGCTGGCTATTGTGCAAGTCATCGTTAATGTTGCCGGATTCTGTGACCTATAGTACAACCACAAATAGTATTTATAAAATTGGTAGG---------------------
droVir3 scaffold_13049:22675494-22675621 + dvi_17 confident TGAAGCTTGGAGCTAGTGAAA--CGCAATTAAAGATAATGTGGTTCAGAAATTTGCAACTTAAACGATATCCCGCACTTGTCGCTGGCTATCGTGCAAGTCATCGTTAATGTTGCCGGATTCTGTGACCT-----------------------------------------------------------
droGri2 scaffold_15110:20858154-20858301 - TGAAAT--------------------------------CATGGCACAGAAATATGCAACTTGAACGATATCCCGCACTTGTCGCTGGCTATCGTGCAAGTCATCGTTAATGTTGCGTTATCCTGTAGCCG------CAAGCAACAATAA--TCTACC-AAATGGTAGTTAATAGTTACACATTGTTTCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TGAT-TTTAGAGTCTGTAAATGCCGTTATTAAAGA---TGTGGCGCAGAAGTTTGCAACTTAAACGATATCCCGCACTTGTCGCTGGCTATTGTGCAAGTCATCGTTAATGTTGCCGGATTCTGTGACCTATAGTACAACCACAAATAGTATTTATAAAATTGGTAGG---------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
......................................................GCAACTTAAACGATATCCCGCA.................................................................................................................222402.008043642618283608
......................................................GCAACTTAAACGATATCCCGCAC................................................................................................................232113.50227502131701
......................................................GCAACTTAAACGATATCCCGC..................................................................................................................21238.507721024500
............................................................................CTTGTCGCTGGCTATTGTG..............................................................................................19122.00221612102
.......................................................CAACTTAAACGATATCCCGCA.................................................................................................................21220.00403801010
...............................................................................................CAAGTCATCGTTAATGTTGCCG........................................................................22218.003671141130
..................................................................................................GTCATCGTTAATGTTGCCG........................................................................19215.50313000100
...........................................................................ACTTGTCGCTGGCTATTGTGC.............................................................................................21110.0010000091
.......................................................CAACTTAAACGATATCCCGCAC................................................................................................................2226.0012901020
......................................................GCAACTTAAACGATATCCCG...................................................................................................................2025.5011302312
...............................................................................................CAAGTCATCGTTAATGTTGCC.........................................................................2125.0010003340
...................................................................................................TCATCGTTAATGTTGCCG........................................................................1825.0010700300
......................................................GCAACTTAAACGATATCCCGCAT................................................................................................................2324.008600200
......................................................GCAACTTAAACGATATCCCGCAA................................................................................................................2323.507100051
......................................................GCAACTTAAACGATATCC.....................................................................................................................1822.505100040
........................................................AACTTAAACGATATCCCGCACT...............................................................................................................2222.004000220
...............................................................................................CAAGTCATCGTTAATGTTGCCT........................................................................2222.004002110
......................................................GCAACTTAAACGATATCCC....................................................................................................................1922.004000040
................................................................................................AAGTCATCGTTAATGTTGCCG........................................................................2122.004301000
......................................................GCAACTTAAACGATATCCCGCACC...............................................................................................................2422.004100030
...............................................................................................CAAGTCATCGTTAATGTTGC..........................................................................2021.503001101
.......................................................CAACTTAAACGATATCCCGC..................................................................................................................2021.503300000
........................................................AACTTAAACGATATCCCGCAC................................................................................................................2121.503100020
......................................................GCAACTTAAACGATATCCCGCC.................................................................................................................2221.503002010
...............................................................................................CAAGTCATCGTTAATGTTGCCGA.......................................................................2321.002000020
..............................................................................................GCAAGTCATCGTTAATGTTGCCG........................................................................2321.002000020
...............................................................................................CAAGTCATCGTTAATGTTGCCGC.......................................................................2321.002000020
.............................................................................TTGTCGCTGGCTATTGTG..............................................................................................1811.001010000
......................................................GCAACTTAAACGATATCCCGT..................................................................................................................2121.002000101
...............................................................................................CAAGTCATCGTTAATGTTGCCC........................................................................2221.002001010
droVir3
TGAAGCTTGGAGCTAGTGAAA--CGCAATTAAAGATAATGTGGTTCAGAAATTTGCAACTTAAACGATATCCCGCACTTGTCGCTGGCTATCGTGCAAGTCATCGTTAATGTTGCCGGATTCTGTGACCT-----------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
......................................................GCAACTTAAACGATATCCCGCA.................................................................................................................2212193.0021935813140300000000003641501111602069403251790000140010000000000000000000000000043213200000000000000000
......................................................GCAACTTAAACGATATCCCGC..................................................................................................................211388.00388113421600000000006034123350310563000000000000000000000000000000000000117100000000000000000
......................................................GCAACTTAAACGATATCCCG...................................................................................................................201220.002203142340000000000331451538120321700000000000000000000000000000000000007300000000000000000
......................................................GCAACTTAAACGATATCCCGCAC................................................................................................................231185.001850181455000000000034104101070121100000000000000000000000000000000000000000000000000000000
...............................................................................................CAAGTCATCGTTAATGTTGCCG........................................................................22195.0095319300001000000765931022000000101030100000000000000000000000126100000000000000000
.......................................................CAACTTAAACGATATCCCGCAC................................................................................................................22170.0070021020000000000186488107200000000000000000000000000000000000002000000000000000000
............................................................................CTTGTCGCTGGCTATCGTG..............................................................................................19168.0068132600000000000000000010000000000001100001000000000000000011630200001002000000000
...............................................................................................CAAGTCATCGTTAATGTTGC..........................................................................20153.005315400000000000001110001000000000000000000000000000000000000037200000000000000000
......................................................GCAACTTAAACGATATCCCGT..................................................................................................................21153.005300400000000000851453017500000000000000000000000000000000000000100000000000000000
..................................................................................................GTCATCGTTAATGTTGCC.........................................................................18151.005101280000000000033330202300000000000000000000000000000000000002100000000000000000
...............................................................................................CAAGTCATCGTTAATGTTGCC.........................................................................21150.0050019100000000000121010001000010100000000000000000000000000000020000000002000000000
.......................................................CAACTTAAACGATATCCCGCA.................................................................................................................21145.00450091000000000074247203300000000000000000000000000000000000002100000000000000000
...............................................................................................CAAGTCATCGTTAATGTT............................................................................18133.003312800000000000000000000000000000000000000000000000000000002002000000000000000000
......................................................GCAACTTAAACGATATCCCGCAA................................................................................................................23133.00330036000000000081323002500000000000000000000000000000000000000000000000000000000
......................................................GCAACTTAAACGATATCCCGCAT................................................................................................................23133.00330001000000000062156108300000000000000000000000000000000000000000000000000000000
..................................................................................................GTCATCGTTAATGTTGCCG........................................................................19132.003200190000000000000012201600000000000000000000000000000000000001000000000000000000
......................................................GCAACTTAAACGATATCCCGCC.................................................................................................................22125.002501010000000000300033013100000000000000000000000000000000000000000000000000000000
.......................................................CAACTTAAACGATATCCCGC..................................................................................................................20123.00230080000000000020102206000000000000000000000000000000000000001100000000000000000
...................................................................................................TCATCGTTAATGTTGCCG........................................................................18123.00230150000000000024132001400000000000000000000000000000000000000000000000000000000
......................................................GCAACTTAAACGATATCCC....................................................................................................................19122.00221060000000000041211101100000000000000000000000000000000000102000000000000000000
........................................................AACTTAAACGATATCCCGCACT...............................................................................................................22113.00130021000000000020001304000000000000000000000000000000000000000000000000000000000
......................................................GCAACTTAAACGATATCCCGCT.................................................................................................................22112.00120010000000000021112002100000000000000000000000000000000000001000000000000000000
droGri2
TGAAAT--------------------------------CATGGCACAGAAATATGCAACTTGAACGATATCCCGCACTTGTCGCTGGCTATCGTGCAAGTCATCGTTAATGTTGCGTTATCCTGTAGCCG------CAAGCAACAATAA--TCTACC-AAATGGTAGTTAATAGTTACACATTGTTTCASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.......................................................CAACTTGAACGATATCCCGCAC................................................................................................................2214.00440
.......................................................CAACTTGAACGATATCCCGCA.................................................................................................................2111.00110
..................................................................................................GTCATCGTTAATGTTGCGT........................................................................1911.00110

Generated: 10/20/2015 at 07:04 PM