ID:

dmo_2207

 Coordinate:

scaffold_6541:915412-915562 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-51.6 -51.5 -51.5

Flybase annnotation

CDS [Dmoj\GI14204-cds]; exon [dmoj_GLEANR_14495:2]; intron [Dmoj\GI14204-in]

Repeatable elements

NameClassFamilyStrand
OSVALDO_LTRLTRGypsy+
mature
  1. scaffold_2860:5216-5242 -
  2. scaffold_3642:2312-2338 +
  3. scaffold_4953:6320-6346 +
  4. scaffold_6395:7060-7086 -
  5. scaffold_6498:2314073-2314099 +
  6. scaffold_6498:3188202-3188228 +
  7. scaffold_6498:3193461-3193487 +
  8. dmo_2207  scaffold_6541:915466-915492 +
  9. scaffold_6541:1333923-1333949 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGCTTGGCAACCGATCCTCGCGCACTGGCCAGCGACTTCGCGATGGTCTCGTGTTTTCCCGAAGAAAGAGGGGAGTGTGAGGAGCAATATTGGTATGCACATATTAATGTATATGAACGTACGTAGTTGCTGTAGGAGCGACCCTCGCGACTGGAAAGAGGTCAAGGTCCGACTATAGTCGGCCTCTTTCGCTCCTACAGATTCAGCCCAGCTCCAGACCCGAACAGGCCCCGTTACCACCCGAAGCAGG
**************************************************.....((((((.........))))))........(((((....(((((..(((((......)))))..)))))...)))))(((((((((((.((((...........))))...(((.(((((....))))))))...))))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
......GGCAACCGATCCTCGCGCACTGG.............................................................................................................................................................................................................................. 23 0 16 1.06 17 16 1 0 0
..........ACCGATCCTCGCGCACTGGCCAG.......................................................................................................................................................................................................................... 23 0 16 0.81 13 12 0 0 1
..........ACCGATCCTCGCGCACTGGCCAGC......................................................................................................................................................................................................................... 24 0 14 0.64 9 9 0 0 0
..........ACCGATCCTCGCGCACTGGCCA........................................................................................................................................................................................................................... 22 0 16 0.44 7 7 0 0 0
..........ACCGATCCTCGCGCACTGGCCAGCGACT..................................................................................................................................................................................................................... 28 0 10 0.40 4 4 0 0 0
..........ACCGATCCTCGCGCACTGGCC............................................................................................................................................................................................................................ 21 0 16 0.31 5 5 0 0 0
......GGCAACCGATCCTCGCGCACTGGCCAGC......................................................................................................................................................................................................................... 28 0 13 0.31 4 2 2 0 0
.......GCAACCGATCCTCGCGCACTGG.............................................................................................................................................................................................................................. 22 0 16 0.25 4 4 0 0 0
......GGCAACCGATCCTCGCGCACTGGCCAG.......................................................................................................................................................................................................................... 27 0 14 0.21 3 3 0 0 0
..........ACCGATCCTCGCGCACTGGCCAGCGAC...................................................................................................................................................................................................................... 27 0 10 0.20 2 1 0 1 0
.............................................GGTCTCGTGTTTTCCCGAAGAAAGAG.................................................................................................................................................................................... 26 0 5 0.20 1 1 0 0 0
......GGCAACCGATCCTCGCGCACTG............................................................................................................................................................................................................................... 22 0 16 0.19 3 3 0 0 0
......GGCAACCGATCCTCGCGCACT................................................................................................................................................................................................................................ 21 0 17 0.18 3 0 3 0 0
......GGCAACCGATCCTCGCGCACTGGCC............................................................................................................................................................................................................................ 25 0 14 0.14 2 1 1 0 0
........................................................................................................TTAATGTATATGAACGTACGTAGTTGC........................................................................................................................ 27 0 9 0.11 1 1 0 0 0
..........ACCGATCCTCGCGCACTGGCCAGCGACTT.................................................................................................................................................................................................................... 29 0 10 0.10 1 1 0 0 0
...................................................................................................................................................................................TCGGCCTCTTTCGCTCCTACAGA................................................. 23 0 11 0.09 1 1 0 0 0
.......GCAACCGATCCTCGCGCACTGGCC............................................................................................................................................................................................................................ 24 0 14 0.07 1 1 0 0 0
......GGCAACCGATCCTCGCGCACTGGCCA........................................................................................................................................................................................................................... 26 0 14 0.07 1 1 0 0 0
......GGCAACCGATCCTCGCGCACTGGC............................................................................................................................................................................................................................. 24 0 14 0.07 1 0 1 0 0
......GGCAACCGATCCTCGCGCACTGGCCAC.......................................................................................................................................................................................................................... 27 1 14 0.07 1 0 1 0 0
.......GCAACCGATCCTCGCGCACTGGC............................................................................................................................................................................................................................. 23 0 14 0.07 1 1 0 0 0
..........ACCGATCCTCGCGCACTGGCCAT.......................................................................................................................................................................................................................... 23 1 16 0.06 1 1 0 0 0
.............................................................................................................GTATATGAACGTACGTAGTTGCTGT..................................................................................................................... 25 0 16 0.06 1 1 0 0 0
......GGCAACCGATCCTCGCGCAC................................................................................................................................................................................................................................. 20 0 17 0.06 1 0 1 0 0
......GGCTACCGATCCTCGCGCAC................................................................................................................................................................................................................................. 20 1 18 0.06 1 0 1 0 0
......GTCAACCGATCCTCGCGCACTGG.............................................................................................................................................................................................................................. 23 1 18 0.06 1 0 1 0 0
...............................................................................................................ATATGAACGTACGTAGTTGC........................................................................................................................ 20 0 19 0.05 1 0 0 1 0
............................................TGGTCTCGTGTTTTCCCGAA........................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0
......................................................................................................TATTAATGTATATGAACGTACGT.............................................................................................................................. 23 0 20 0.05 1 1 0 0 0
...............TCCTCGCGCACTGGCCAGCGACTT.................................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
...........CCGATCCTCGCGCACTGGC............................................................................................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0
...........................................................................................................................................................................................TTTCGCTCCTACAGATTCAGC........................................... 21 0 20 0.05 1 0 1 0 0
.............GATCCTCGCGCACTGGCCA........................................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

TTCGAACCGTTGGCTAGGAGCGCGTGACCGGTCGCTGAAGCGCTACCAGAGCACAAAAGGGCTTCTTTCTCCCCTCACACTCCTCGTTATAACCATACGTGTATAATTACATATACTTGCATGCATCAACGACATCCTCGCTGGGAGCGCTGACCTTTCTCCAGTTCCAGGCTGATATCAGCCGGAGAAAGCGAGGATGTCTAAGTCGGGTCGAGGTCTGGGCTTGTCCGGGGCAATGGTGGGCTTCGTCC
**************************************************.....((((((.........))))))........(((((....(((((..(((((......)))))..)))))...)))))(((((((((((.((((...........))))...(((.(((((....))))))))...))))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
............................CGGTCGCTGAAGCGCTACCAGAGCAC..................................................................................................................................................................................................... 26 0 1 2.00 2 0 1 1 0
.......................................................................................................................................................................................GGAGAAAGCGAGGATGTCTAAGTCG........................................... 25 0 20 1.05 21 21 0 0 0
.............................GGTCGCTGAAGCGCTACCAGAGCAC..................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0
.............................................................................CACTCCTCGTTATAACCATACGTGTATC.................................................................................................................................................. 28 1 1 1.00 1 0 1 0 0
................................CGCTGAAGCGCTACCAGAGCAC..................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0
..............................GTCGCTGAAGCGCTACCAGAGCAC..................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
............................................................................................................................................................................................................................GGCTTGTCCGGGGCAATGGTGGGCTT..... 26 0 12 0.50 6 5 1 0 0
........................................................................................................................................................................................GAGAAAGCGAGGATCTCTAAGTCGG.......................................... 25 1 4 0.25 1 1 0 0 0
.............................................................................................................................................................................................................................GCTTGTCCGGGGCAATGGTGGGCTT..... 25 0 12 0.25 3 3 0 0 0
..............................................................................................................................................................................................................................CTTGTCCGGGGCAATGGTGGGCTT..... 24 0 12 0.25 3 2 1 0 0
........................................................................................................................................................................................................................TCTGGGCTTACCCGGGACA................ 19 3 17 0.24 4 4 0 0 0
......................................................................................................................................................................................CGGAGAAAGCGAGGATGTCTAAGTCG........................................... 26 0 17 0.24 4 4 0 0 0
...............................................................TCTTTCTCCCCTCACACT.......................................................................................................................................................................... 18 0 5 0.20 1 1 0 0 0
...............................................................TCTTTCTCCCCCCACACTCCTTGGT................................................................................................................................................................... 25 3 5 0.20 1 1 0 0 0
............................................................................................................................................................................................................................CGCTTGTCCGGGGCAATGGTGGGCTT..... 26 1 12 0.17 2 2 0 0 0
............GCTAGGAGCGCGTGACCGGTCGCT....................................................................................................................................................................................................................... 24 0 20 0.15 3 3 0 0 0
..................................................................................................................................................................................CAGCCGGAGAAAGCGAGGATGTCTAAGT............................................. 28 0 10 0.10 1 1 0 0 0
................................................................................................................................................................................ATCAGCCGGAGAAAGCGAGTATGTCT................................................. 26 1 10 0.10 1 0 1 0 0
.................................................................................................................................................................................................................................GTCCGGGGCAATGGTGGGCTTCGT.. 24 0 11 0.09 1 1 0 0 0
.........................................................................................................ATTACATATACTTGCATGCATCAACG........................................................................................................................ 26 0 11 0.09 1 1 0 0 0
...................................................................................................................................................................................AGCCGGAGAAAGCGAGGATGTC.................................................. 22 0 11 0.09 1 1 0 0 0
..................................................................................................................................................................................CAGCCGGAGAAAGCGGGGATGTCTAAG.............................................. 27 1 11 0.09 1 1 0 0 0
.................................................................................................................................................................................TCAGCCGGAGAAAGCGAGGATGTCTA................................................ 26 0 11 0.09 1 1 0 0 0
........................................................................................................................................................................................................................TCTGGGCTTATCCGGGACA................ 19 2 11 0.09 1 1 0 0 0
..................................................................................................................................................................................CAGCCGGAGAAAGCGAGGATGTCTAAG.............................................. 27 0 11 0.09 1 1 0 0 0
.....................................................................................................................................................................................................................................GGGGCAATGGTGGGCTTCGTC. 21 0 12 0.08 1 0 0 0 1
..............................................................................................................................................................................................................................CTTGTCCGGGGCAATGGTGGG........ 21 0 12 0.08 1 0 1 0 0
......................................................................................................................................................................CCAGGCTCCTATCAGCCTG.................................................................. 19 3 12 0.08 1 0 1 0 0
................................................................................................................................................................................................................................TGTCCGGGGCAATGGTGGACTT..... 22 1 13 0.08 1 1 0 0 0
................................................................................................................................................................................................................................TGTCCGGGGCAATGGTGGTCGT..... 22 2 13 0.08 1 0 1 0 0
..........TGGCTAGGAGCGCGTGACCGGTCGGT....................................................................................................................................................................................................................... 26 1 13 0.08 1 0 1 0 0
..........TGGCTAGGAGCGCGTGACCGGTCGCT....................................................................................................................................................................................................................... 26 0 13 0.08 1 1 0 0 0
....................................................................................................................................................................................GCCGGAGAAAGCGAAGATGTCTAAGT............................................. 26 1 13 0.08 1 1 0 0 0
....................................................................................................................................................................................GCCGGAGAAAGCGAGGATGTCTAAGT............................................. 26 0 13 0.08 1 1 0 0 0
..........................................................................................................................................................................................................................CTCGCTTGTCCGGGGCAATGGTGGGCT...... 27 3 13 0.08 1 1 0 0 0
......CCGTTGGCTAGGAGCGCGTGACCGGT........................................................................................................................................................................................................................... 26 0 14 0.07 1 0 1 0 0
...................................................................................................................................................................................AGCCGGAGAAAGCGAGGATGT................................................... 21 0 14 0.07 1 1 0 0 0
...................................................................................................................................................................................................................................CCGGGGCAATGGTGGGCTT..... 19 0 14 0.07 1 0 1 0 0
.....................................................................................................................................................................................CCGGAGAAAGCGAGGATGTCTAAGTCG........................................... 27 0 16 0.06 1 1 0 0 0
.....................................................................................................................................................................................CCGGAGAAAGCGAGGATGTCTAAGT............................................. 25 0 16 0.06 1 0 1 0 0
.....................................................................................................................................................................................CCGGAGAAAGCGAGGATGTCTAATT............................................. 25 1 16 0.06 1 0 1 0 0
TTCGAACCGTTGGCTAGGAGCGCGT.................................................................................................................................................................................................................................. 25 0 17 0.06 1 0 1 0 0
......................................................................................................................................................................................CGGAGAAAGCGAGGATGTCTAAGT............................................. 24 0 17 0.06 1 1 0 0 0
...GAACCGTTGGCTAGGAGCGCGTG................................................................................................................................................................................................................................. 23 0 17 0.06 1 1 0 0 0
......................................................................................................................................................................................CGGAGAAAGCGAGGATGTCTA................................................ 21 0 18 0.06 1 0 1 0 0
......................................................................................................................................................................................CGGAGAAAGCGAGGATGTCTATGGC............................................ 25 2 18 0.06 1 0 1 0 0
.......................................................................................................................................................................................GGAGAAAGCGAGGATGTCTAAGT............................................. 23 0 20 0.05 1 1 0 0 0
.......................................................................................................................................................................................GGAGAAAGCGAGGATGTCTAAGTCT........................................... 25 1 20 0.05 1 0 1 0 0
.......................................................................................................................................................................................GGAGAAAGCGAGGATGTCTAAGTCTC.......................................... 26 2 20 0.05 1 0 1 0 0
.......................................................................................................................................................................................GGAGAAAGCGAGGATGTCTAAGTC............................................ 24 0 20 0.05 1 0 0 1 0
..CGTACCGTTGGATGGGAGC...................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0
............GCTAGGAGCGCGTGACCGCTCGCTGA..................................................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0
...........GGCTAGGAGCGCGAGACCGGTCGCT....................................................................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6541:915362-915612 + dmo_2207 AAGCTTGGCAACCGATCCTCGCGCACTGGCCAGCGACTTCGCGATGGTCTCGTGTTTTCCCGAAGAAAGAGGGGAGTGTGAGGAGCAATATTGGTATGCACATATTAATGTATATGAACGTACGTAGTTGCTGTAGGAGCGACCCTCGCGACTGGAAAGAGGTCAAGGTCCGACTATAGTCGGCCTCTTTCGCTCCTACAGATTCAGCCCAGCTCCAGACCCGAACAGGCCCCGTTACCACCCGAAGCAGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AAGCTTGGCAACCGATCCTCGCGCACTGGCCAGCGACTTCGCGATGGTCTCGTGTTTTCCCGAAGAAAGAGGGGAGTGTGAGGAGCAATATTGGTATGCACATATTAATGTATATGAACGTACGTAGTTGCTGTAGGAGCGACCCTCGCGACTGGAAAGAGGTCAAGGTCCGACTATAGTCGGCCTCTTTCGCTCCTACAGATTCAGCCCAGCTCCAGACCCGAACAGGCCCCGTTACCACCCGAAGCAGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......GGCAACCGATCCTCGCGCACTGG..............................................................................................................................................................................................................................23161.06171600010
..........ACCGATCCTCGCGCACTGGCCAG..........................................................................................................................................................................................................................23160.81131210000
..........ACCGATCCTCGCGCACTGGCCAGC.........................................................................................................................................................................................................................24140.649900000
..........ACCGATCCTCGCGCACTGGCCA...........................................................................................................................................................................................................................22160.447700000
..........ACCGATCCTCGCGCACTGGCCAGCGACT.....................................................................................................................................................................................................................28100.404400000
..........ACCGATCCTCGCGCACTGGCC............................................................................................................................................................................................................................21160.315500000
......GGCAACCGATCCTCGCGCACTGGCCAGC.........................................................................................................................................................................................................................28130.314200020
.......GCAACCGATCCTCGCGCACTGG..............................................................................................................................................................................................................................22160.254400000
......GGCAACCGATCCTCGCGCACTGGCCAG..........................................................................................................................................................................................................................27140.213300000
..........ACCGATCCTCGCGCACTGGCCAGCGAC......................................................................................................................................................................................................................27100.202100001
.............................................GGTCTCGTGTTTTCCCGAAGAAAGAG....................................................................................................................................................................................2650.201100000
......GGCAACCGATCCTCGCGCACTG...............................................................................................................................................................................................................................22160.193300000
......GGCAACCGATCCTCGCGCACT................................................................................................................................................................................................................................21170.183000030
......GGCAACCGATCCTCGCGCACTGGCC............................................................................................................................................................................................................................25140.142100010
........................................................................................................TTAATGTATATGAACGTACGTAGTTGC........................................................................................................................2790.111100000
..........ACCGATCCTCGCGCACTGGCCAGCGACTT....................................................................................................................................................................................................................29100.101100000
...................................................................................................................................................................................TCGGCCTCTTTCGCTCCTACAGA.................................................23110.091100000
.......GCAACCGATCCTCGCGCACTGGCC............................................................................................................................................................................................................................24140.071100000
......GGCAACCGATCCTCGCGCACTGGCCA...........................................................................................................................................................................................................................26140.071100000
......GGCAACCGATCCTCGCGCACTGGC.............................................................................................................................................................................................................................24140.071000010
......GGCAACCGATCCTCGCGCACTGGCCAC..........................................................................................................................................................................................................................27140.071000010
.......GCAACCGATCCTCGCGCACTGGC.............................................................................................................................................................................................................................23140.071100000
..........ACCGATCCTCGCGCACTGGCCAT..........................................................................................................................................................................................................................23160.061100000
.............................................................................................................GTATATGAACGTACGTAGTTGCTGT.....................................................................................................................25160.061100000
......GGCAACCGATCCTCGCGCAC.................................................................................................................................................................................................................................20170.061000010
...............................................................................................................ATATGAACGTACGTAGTTGC........................................................................................................................20190.051000001
............................................TGGTCTCGTGTTTTCCCGAA...........................................................................................................................................................................................20200.051000010
......................................................................................................TATTAATGTATATGAACGTACGT..............................................................................................................................23200.051100000
...............TCCTCGCGCACTGGCCAGCGACTT....................................................................................................................................................................................................................24200.051100000
...........CCGATCCTCGCGCACTGGC.............................................................................................................................................................................................................................19200.051100000
...........................................................................................................................................................................................TTTCGCTCCTACAGATTCAGC...........................................21200.051000010
.............GATCCTCGCGCACTGGCCA...........................................................................................................................................................................................................................19200.051100000

Generated: 05/18/2015 at 02:09 AM