ID:

dmo_2198

 Coordinate:

scaffold_6541:482441-482602 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.7 -3.7 -3.6

Flybase annnotation

exon [dmoj_GLEANR_14410:2]; CDS [Dmoj\GI14186-cds]; exon [dmoj_GLEANR_14410:3]; CDS [Dmoj\GI14186-cds]; intron [Dmoj\GI14186-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCACGAGCCCCCGGCGACGAGGAGGATCAAGATACGAACACCAGGATAGCGTAAGGAGCGGGAAAACTTATTACCTTGTATTAACTTTAAGTCACATGAACTAGGCAGACATCAGGCACTATACGCAGACAGTAGGCACTAGGCAAAGCGCAGGCATCAAGTAGTTATTCCCCATGGTCTTACTAATATTACGATTAAACCACACCCCACAGAGCAACTGAGCGGCAACCCCGACGCGCTCGTCGGGAAGACGGCAACCGCT
****************************************************************************************************************************...........((.((..((...))..)))).....................************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V041
embryo
 V056
head
.............................................................................................................................................................................................TACGATTAAACCACACCCCACAGAGC............................................... 26 0 1 10.00 10 8 1 1 0 0
.........................................................................................................................................................GCATCAAGTAGTTATTCCCCATG...................................................................................... 23 0 1 4.00 4 3 1 0 0 0
.............................................................................................................................................................................................TACGATTAAACCACACCCCACAGAGCA.............................................. 27 0 1 3.00 3 3 0 0 0 0
...........................CAAGATACGAACACCAGGATAGCGT.................................................................................................................................................................................................................. 25 0 1 3.00 3 3 0 0 0 0
.............................................................................................................................................................................................TACGATTAAACCACACCCCACAGAGCAAC............................................ 29 0 1 3.00 3 3 0 0 0 0
...........................CAAGATACGAACACCAGGATAGC.................................................................................................................................................................................................................... 23 0 1 3.00 3 2 1 0 0 0
.........................................................................................................................................................GCATCAAGTAGTTATTCCCCATGG..................................................................................... 24 0 1 2.00 2 2 0 0 0 0
............................................................................................................................GCAGACAGTAGGCACTAGGC...................................................................................................................... 20 0 1 2.00 2 1 0 0 1 0
.........................................................................................................................................................GCATCAAGTAGTTATTCCCCATGGTCT.................................................................................. 27 0 1 2.00 2 2 0 0 0 0
......................................................................TTACCTTGTATTAACTTTAAGTCACATG.................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0
...........................CAAGATACGACCACCAGGATAGCGT.................................................................................................................................................................................................................. 25 1 1 1.00 1 0 1 0 0 0
.............................................................................................................................................................CAAGTAGTTATTCCCCATGGTCTTAC............................................................................... 26 0 1 1.00 1 0 0 1 0 0
.........................................................................................................................................................GCATCAAGTAGTTATTCCCCAT....................................................................................... 22 0 1 1.00 1 1 0 0 0 0
..................................................................................................AACTAGGCAGACATCAGGCACTAT............................................................................................................................................ 24 0 2 1.00 2 2 0 0 0 0
...........................CAAGATACGAACACCAGGATAGCG................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................TACGATTAAACCACACCCCACAGA................................................. 24 0 1 1.00 1 1 0 0 0 0
...........................CAAGATACGAACACCAGGATAGCGTA................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
......................................................................TTACCTTGTATTAACTTTAAGTCACAT..................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................GCATCAAGTAGTTATTCCCCATGGTCTTA................................................................................ 29 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................CAAGTAGTTATTCCCCATGGTCT.................................................................................. 23 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................CAAGTAGATATTCCCCATGGTCTTAC............................................................................... 26 1 1 1.00 1 1 0 0 0 0
.....................................................................................................TAGGCAGACATCAGGCACTATACGCAGAC.................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0
.........................................................................................................................................................GCATCAAGTAGTTATTCCCC......................................................................................... 20 0 1 1.00 1 1 0 0 0 0
...............................................................................................................TCAGGCACTATACGCAGACAGTAGGCAC........................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................CATCAAGTAGTTATTCCCCATGG..................................................................................... 23 0 1 1.00 1 1 0 0 0 0
...........................CAAGATACGAACACCAGGATAGCGTAA................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0
............................................................................................................................................................................................TTACGATTAAACCACACCCCACA................................................... 23 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................ATTACGATTAAACCACACCCCACAGA................................................. 26 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................TACGATTAAACCACACCCCACAGAGCAA............................................. 28 0 1 1.00 1 1 0 0 0 0
..............................................TAGCGTAAGGAGCGGGAAAAC................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
.........................................................................................................................................................GCATCAAGTAGTTATTCCCCATGGTC................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................TATACGCAGACAGTAGGCACTAGGC...................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................CAAGTAGTTATTCCCCATGGTC................................................................................... 22 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................TACGATTAAACCACACCCCACA................................................... 22 0 1 1.00 1 1 0 0 0 0
......................................................................TTACCTTGTATTAACTTTAAGTCACA...................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
............................................GATAGCGTAAGGAGCGGGAA...................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................TACGATTAAACCACACCCCAC.................................................... 21 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................GCATCAAGTAGTTATTCCCCATGGT.................................................................................... 25 0 1 1.00 1 1 0 0 0 0
......................................................................TTACCTTGTATAAACTTTAAGTCACA...................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................GCATCAAGTAGTTATTCCCCATGGTCC.................................................................................. 27 1 1 1.00 1 0 0 1 0 0
...........................................................................................................................................................................................ATTACGATTAAACCACACCCCACA................................................... 24 0 1 1.00 1 1 0 0 0 0
.....................................................................................................TAGGCAGACATCAGGCACTATACGCA....................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................................................................................ATTACGATTAAACCACACCCCACAGAGC............................................... 28 0 1 1.00 1 0 1 0 0 0
.......................................................................................TAAGTCACATGAACTAGGCAGACATC..................................................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0
......................................................................................TTAAGTCACATGAACTAGGCAGACATC..................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0
.............................................................................................ACATGAACTAGGCAGACATCAGGCACTA............................................................................................................................................. 28 0 2 0.50 1 1 0 0 0 0
..............................................................................................CATGAACTAGGCAGACATCAGG.................................................................................................................................................. 22 0 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................................................................TGAGCGGCAACCCCGACGCGCTCGTCGG................ 28 0 2 0.50 1 1 0 0 0 0
.............................................................................................ACATGAACTAGGCAGACATCAGGC................................................................................................................................................. 24 0 2 0.50 1 1 0 0 0 0
............................................................................TGTATTAACTTTAAGTCACA...................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0
................................................................................................TGAACTAGGCAGACATCAGGCACTATA........................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0
................................................................................TTAACTTTAAGTCACATGAACTAGGCA........................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0
.............................................................................................AGATGAACTAGCCAGACATCAGGC................................................................................................................................................. 24 2 2 0.50 1 0 1 0 0 0
..............................................................AAAACTGATTACATTGTAT..................................................................................................................................................................................... 19 2 11 0.09 1 0 0 0 0 1
...............GACGAGGTGGATCATGCTA.................................................................................................................................................................................................................................... 19 3 13 0.08 1 0 0 1 0 0

Anti-sense strand reads

GGTGCTCGGGGGCCGCTGCTCCTCCTAGTTCTATGCTTGTGGTCCTATCGCATTCCTCGCCCTTTTGAATAATGGAACATAATTGAAATTCAGTGTACTTGATCCGTCTGTAGTCCGTGATATGCGTCTGTCATCCGTGATCCGTTTCGCGTCCGTAGTTCATCAATAAGGGGTACCAGAATGATTATAATGCTAATTTGGTGTGGGGTGTCTCGTTGACTCGCCGTTGGGGCTGCGCGAGCAGCCCTTCTGCCGTTGGCGA
**************************************************************************************...........((.((..((...))..)))).....................**************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
 V110
male body		 V049
head
 V056
head
............CCGCTGCTCCTCCTAGTTCTATGCT................................................................................................................................................................................................................................. 25 0 1 50.00 50 12 35 2 1 0 0
.............CGCTGCTCCTCCTAGTTCTATGCT................................................................................................................................................................................................................................. 24 0 1 22.00 22 8 11 2 1 0 0
..........................................................................................................................................GATCCGTTTCGCGTCCGTAGTTCAT................................................................................................... 25 0 1 15.00 15 14 1 0 0 0 0
.......................................................................................................CCGTCCGCAGTCCGGGATATG.......................................................................................................................................... 21 3 2 14.50 29 27 0 0 1 0 1
......................................................CCTCGCCCTTTTGAATAATGGAACAT...................................................................................................................................................................................... 26 0 1 12.00 12 10 1 1 0 0 0
.............................................................................................................................................CCGTTTCGCGTCCGTAGTTCATCAAT............................................................................................... 26 0 1 12.00 12 4 8 0 0 0 0
.........GGGCCGCTGCTCCTCCTAGTTCTATGCT................................................................................................................................................................................................................................. 28 0 1 10.00 10 8 2 0 0 0 0
.........................................................CGCCCTTTTGAATAATGGAACATAAT................................................................................................................................................................................... 26 0 1 8.00 8 5 3 0 0 0 0
.....................................................TCCTCGCCCTTTTGAATAATGGAACAT...................................................................................................................................................................................... 27 0 1 8.00 8 2 5 1 0 0 0
..........GGCCGCTGCTCCTCCTAGTTCTATGCT................................................................................................................................................................................................................................. 27 0 1 8.00 8 8 0 0 0 0 0
...........GCCGCTGCTCCTCCTAGTTCTATGCT................................................................................................................................................................................................................................. 26 0 1 7.00 7 7 0 0 0 0 0
.......................................................................................................CCGTCCGCAGTCCGGGATATGC......................................................................................................................................... 22 3 1 7.00 7 7 0 0 0 0 0
...........................................................................................................CTGTAGTCCGTGATATGCGTCTGTCAT................................................................................................................................ 27 0 1 7.00 7 5 1 1 0 0 0
....................................................................................................................GTGATATGCGTCTGTCATCCGTGAT......................................................................................................................... 25 0 1 5.00 5 5 0 0 0 0 0
..............GCTGCTCCTCCTAGTTCTATGCT................................................................................................................................................................................................................................. 23 0 1 4.00 4 4 0 0 0 0 0
...................................................................................................................CGTGATATGCGTCTGTCATCCGTGAT......................................................................................................................... 26 0 1 4.00 4 2 2 0 0 0 0
..............................................................................................................................................CGTTTCGCGTCCGTAGTTCATCAAT............................................................................................... 25 0 1 4.00 4 3 1 0 0 0 0
........................................................................................................CGTCCGCAGTCCGGGATATG.......................................................................................................................................... 20 3 3 3.67 11 11 0 0 0 0 0
...............................................................................................................................................GTTTCGCGTCCGTAGTTCATCAAT............................................................................................... 24 0 1 3.00 3 3 0 0 0 0 0
............CCGCTGCTCCTCCTAGTTCTATGCTT................................................................................................................................................................................................................................ 26 0 1 3.00 3 2 1 0 0 0 0
...........GCCGCTGCTCCTCCTAGTTCTATGC.................................................................................................................................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0
...............CTGCTCCTCCTAGTTCTATGCT................................................................................................................................................................................................................................. 22 0 1 2.00 2 1 1 0 0 0 0
...................................................................................................................................................CGCGTCCGTAGTTCATCAATAAGGGGT........................................................................................ 27 0 1 2.00 2 2 0 0 0 0 0
.....................................................CCCTCGCCCTTTTGAATAATGGAACAT...................................................................................................................................................................................... 27 1 1 2.00 2 0 2 0 0 0 0
.........................................................CGCCCTTTTGAATAATGGAACATAA.................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0
........................................................................................................CGTCCGCAGTCCGGGATATGC......................................................................................................................................... 21 3 1 2.00 2 1 0 0 0 1 0
..........................................................................................................................................GATCCGTTTCGCGTCCGTAGTTCA.................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
..............................................................................................................................................CGTTTCGCGTCCGTAGTTCATCAA................................................................................................ 24 0 1 2.00 2 2 0 0 0 0 0
.......................................................CTCGCCCTTTTGAATAATGGAACAT...................................................................................................................................................................................... 25 0 1 2.00 2 0 2 0 0 0 0
.............................................................................................................................................CCGTTTCGCGTCCGTAGTTCAT................................................................................................... 22 0 1 2.00 2 1 1 0 0 0 0
............CCGCTGCTCCTCCTAGTTCTATGGT................................................................................................................................................................................................................................. 25 1 1 2.00 2 0 2 0 0 0 0
............................................................................................................TGTAGTCCGTGATATGCGTCTGTCAT................................................................................................................................ 26 0 1 2.00 2 2 0 0 0 0 0
.....................................................TCCTCGCCCTTTTGAATAATGGAACATC..................................................................................................................................................................................... 28 1 1 2.00 2 0 2 0 0 0 0
............................................................................................................................................................................GTACCAGAATGATTATAATGCTAATTT............................................................... 27 0 2 1.50 3 3 0 0 0 0 0
.........................................................................................TCAGTGTACTTGATCCGTCTGTAGT.................................................................................................................................................... 25 0 2 1.50 3 3 0 0 0 0 0
...........................................................................................................................................................................GGTACCAGAATGATTATAATGCTAATTT............................................................... 28 0 2 1.50 3 3 0 0 0 0 0
...............................................................................................................................................................................CCAGAATGATTATAATGCTAATTT............................................................... 24 0 2 1.50 3 3 0 0 0 0 0
..............................................................................................................................................................................ACCAGAATGATTATAATGCTAATTT............................................................... 25 0 2 1.50 3 3 0 0 0 0 0
.......................................................................................................CCGTCCGCAGTCCGGGATAT........................................................................................................................................... 20 3 4 1.25 5 5 0 0 0 0 0
.............................................................................................................GTAGTCCGTGATATGCGTCTGTCA................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
......CGGGGGCCGCTGCTCCTCCTAGTTCTAT.................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................CTGTAGTCCGTGATATGCGTCTGTCA................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................GATCCGTTTCGCCTCCGTAGTTCATCA................................................................................................. 27 1 1 1.00 1 0 1 0 0 0 0
......................................................CCTCGCCCTTTTGAATAATGGAACA....................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
...........TCCGCTGCTCCTCCTAGTTCTATGCT................................................................................................................................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0
.............AGCTGCTCCTCCTAGTTCTATGCT................................................................................................................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................CGCGTCCGTAGTTCATCAAT............................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................CGTTTCGCGTCCGTAGTTCA.................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................TTTCGCGTCCGTAGTTCATCAA................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................CGTTTCGCGTCCGTAGTTCATCAGT............................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0
.................................................................TGAATAATGGAACATAATTGAAATT............................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................TGTTTCGCGTCCGTAGTTCATCAA................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................TGATCCGTTTCGCGTCCGTAGTTCA.................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................TTTCGCGTCCGTAGTTCATCAAT............................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CTCTGTAGTTCGTGATATGCGTCTGT................................................................................................................................... 26 2 1 1.00 1 0 0 0 1 0 0
.........................................................................................................................................................................GGGGTACCAGAATGATTATAATGCT.................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................TGATCCGTTTCGCGTCCGTAGTTCAT................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................CCGTTTCGCGTCCGTAGTTCATCAA................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0
.......................................................CTCGCCCTTTTGAATAATGGAACATAAT................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................CGTGATATGCGTCTGTCATCCGTGA.......................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
............CCGCTGCTCCTCCTAGTTCT...................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................TGATATGCGTCTGTCATCCGTGAT......................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
............CCCCTGCTCCTCCTAGTTCTATGCT................................................................................................................................................................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0
......CGGGGGCCGCTGCTCCTCCTAGTTCT...................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.........................................................................GGAACATAATTGAAATTCAGTGTACT................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................AGGGGTACCAGAATGATTATAATGCTAAT................................................................. 29 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................TGATCCGTTTCGCGTCCGTAGTTAAT................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
..........AGCCGCTGCTCCTCCTAGTTCTATGC.................................................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................CGTCTGTAGTCCGTGATATGCGTCTGT................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
...........ACCGCTGCTCCTCCTAGTTCTATGCT................................................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0
...............CTGCTCCTCCTAGTTCTATGCTTGTGGT........................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
............CCGCTGCTCCTCCTAGTTCTATGCTTGT.............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0
....................................................TTCCTCGCCCTTTTGAATAATGGA.......................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
................................................CGCATTCCTCGCCCTTTTGAATAAT............................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................TCCTCGCCCTTTTGAATAATGGAA......................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
............CCGCTGCTCCTCCTAGTTCTATGC.................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................................................................................................GGTGTGGGGTGTCTCGTT............................................. 18 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................GATATGCGTCTGTCATCCGTGAT......................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................CGGCTGCGCGAGCAGCCCTTCTGCCGTT..... 28 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................TGTAGTCCGTGATATGCGTCTGTCA................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GTAGTCCGTGATAGGCGTCTGTCAT................................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0
....................CCTCCTAGTTCTATGCTTGTGGTCC......................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................CGCCCTTTTGAATAATGGAACATAATCT................................................................................................................................................................................. 28 2 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................................................................TTGCGCGAGCAGCCCTTCTGCCGTT..... 25 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................CCCGTTTCGCGTCCGTAGTTCA.................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........TGCCGCTGCTCCTCCTAGTTCTATGCT................................................................................................................................................................................................................................. 27 1 1 1.00 1 0 1 0 0 0 0
.............CGCTGCTCCTCCTAGTTCTATTC.................................................................................................................................................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0
..........GGCCGCTGCTCCTCCTAGTTCTAT.................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................ATCCGTTTCGCGTCCGTAGTTCAT................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.......................CCTAGTTCTATGCTTGTGGTCCTAT...................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
...............CTGCTCCTCCTAGTTCTAT.................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................TTTCGCGTCCGTAGTTCATCAATAA............................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................GATCCGTTTCGCGTCCGTA......................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
...........................GTTCTATGCTTGTGGTCCTATCGCAT................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................CCGTTTCGCGTCCGTAGTTCATTAAT............................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
.............................TCTATGCTTGTGGTCCTATCGCATT................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................TCCTCGCCCTTTTGAATAATGGAACGT...................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0
..................................................................................................................CGGTGATATGCGTCTGTCATCCGTGA.......................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
.............CGCTGCTCCTCCTAGTTCTATGC.................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................CTTCGCGTCCGTAGTTCATCAAT............................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................CCGTTTCGCGTCCGTAGTTCATCAGT............................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
...................................................................................................................CGTGATATGCGTCTGTTATCCGTGAT......................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................GTAGTCCGTGATATGCGTCTGTCAT................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................CAGTTTCGCGTCCGTAGTTCATCAAT............................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................CCGTAGTTCATCAATAAGGGGTACC..................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................TAAGGGGTACCAGAATGATTATAAT....................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.............CGCTGCTCCTCCTAGTTCTATCCT................................................................................................................................................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................................GTCCGCAGTCCGGGATATG.......................................................................................................................................... 19 3 11 0.91 10 10 0 0 0 0 0
.............................................................................................................................................................................TACCAGAATGATTATAATGCTAATTT............................................................... 26 0 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................................................GGTACCAGAATGATTACAATGCTAATTT............................................................... 28 1 2 0.50 1 1 0 0 0 0 0
........................................................................................CCCAGTGTACTTGATCCGTCTGTAGT.................................................................................................................................................... 26 2 2 0.50 1 1 0 0 0 0 0
........................................................................................TTCAGTGTACTTGATCCGTCTGTAG..................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................................................GGTACCAGAATGATTATAATGCTAAT................................................................. 26 0 2 0.50 1 1 0 0 0 0 0
..................................................................................CCGAAATTCAGTGTACTTGATCCGTCTGT....................................................................................................................................................... 29 2 2 0.50 1 1 0 0 0 0 0
..................................................................................CTGAAATTCAGTGTACTTGAT............................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
............................................................................ACATAATTGAAATTCAGTGTACTTGAT............................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................................................................CGGTACCAGAATGATTATAATGCTAATTT............................................................... 29 1 2 0.50 1 0 0 0 1 0 0
...............................................................................TAATTGAAATTCAGTGTACTTGAT............................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................................................................GGGTACCAGAATGATTATAATGCTAATTT............................................................... 29 0 2 0.50 1 1 0 0 0 0 0
..........GGCCGCTGCTCCTCCTAGTT........................................................................................................................................................................................................................................ 20 0 2 0.50 1 1 0 0 0 0 0
............................................................................................................................................................................GTACCAGAATGATTATAATGCTAATT................................................................ 26 0 2 0.50 1 1 0 0 0 0 0
.........................................................................................................GTCCGCAGTCCGGGATATGC......................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0
.......................................................................................................CCGTCCGCAGTCCGTGAT............................................................................................................................................. 18 2 3 0.33 1 1 0 0 0 0 0
.............CGCTGCTCCTCCCAGTTCTATGCT................................................................................................................................................................................................................................. 24 1 3 0.33 1 1 0 0 0 0 0
.......................................................................................................CCGTCCGCAGTCCGGGATA............................................................................................................................................ 19 3 16 0.31 5 5 0 0 0 0 0
..............................CTATGCTTGTGGTCGTTTC..................................................................................................................................................................................................................... 19 2 5 0.20 1 1 0 0 0 0 0
..........................................................................................................TCCGCAGTCCGGGATATGC......................................................................................................................................... 19 3 5 0.20 1 1 0 0 0 0 0
..............................................................................................................................................................................................TGGTGATTTGGTGTGGGG...................................................... 18 2 6 0.17 1 0 0 0 1 0 0
........................................................................................................CGTCCGCAGTCCGGGATAT........................................................................................................................................... 19 3 17 0.06 1 1 0 0 0 0 0
...........................................................................................................CCGCAGTCCGGGATATGC......................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0
..........................................................................................................TCCGCAGTCCGGGATATG.......................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6541:482391-482652 - dmo_2198 CCACGAGCCCCC------GGCGACGAGGA---------GGAT-------------------------CAAG------------------A-----TAC------------GAAC----------A-----CCAGG------------------------------------ATAGCGTAAGGAGCGGGAAA-----------------------------------------------ACTTATTACCTT-------------GTA---TTAACTTTAAGTCACATGA----ACTAGGCAGACATCAGG----CACTATACGCAG--ACAGTAGGCACTAGGCAAAGCGCAGG--------CATCAAGTA-GTTATTCCCCATGGTCTTACTAATATTACGATTAAA------CCACACCCCACAGAGCAACTGAGCGGCAACCCCGACGCGCTCGTCGGGAAGACGGCAACCGCT
droVir3 scaffold_12960:46113-46170 - CGACGAGCGACG------A-------AGA---------AGACGAAG------A------------T-CCAG-----------------------------------------GC----------A-----GAGA----------GA---TATGGTGCTTAGGT-----------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGG----------------------------------
droGri2 scaffold_15116:1761838-1761882 - CAACGACCGGAA------GG---------ATACGGG--------TGA------GC-----------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----AAATTCCAAA-----------------------C----------------------------------------------------------------------------------------------------------------ACTA----------------------------------
droWil2 scf2_1100000010821:1005-1045 + ACAACGAGGAT--------------------------------------------------------CCGG------------------G-----TTC------------GAAT----------C-----CCAGG------------------------------------CTAGTGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGA----------------------------------
dp5 Unknown_group_123:4477-4559 + CCACGACAACGAGCACTCCCCCACCAGCG-----AAG----------------A--CGAAGAAGAC--------------------G----ACGA---AGACACGAT------------------------GAGGACGACCCCAG--C-ACCAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC----------------------------------
droPer2 scaffold_200:49715-49835 + CCACGACCACGAGCACACCCCCACCAGCG-----ACGACGAC------------------------------------------------------------GAACCCACCCT--------------------------------------CACCA------G-------CG----------------T--------------------------------ACACACGCAGTAAGATAGCTTAACTCCCCTTAAGGGATTAGAGTA---A----------------GA----AATAGCCAGAAA--------------------------------------------------------------------------------------------------------------------------------------CTAG----------------------------------
droAna3 scaffold_12911:1507267-1507366 - CCACAAGCGATG------A----------CCAACAA--------CG------ACC---TAGAAGAC--------------------G----AC-----------------------------GTAAGTC---------------C------------TCAAGTCACAAAGGGTAATGTT-------------------------------------------------------------------------AAGAAACATTTGTA---ATAAATTTAAAT--------------------CAA---------------------C----------------------------------------------------------------------------------------------------------------TAGG----------------------------------
droBip1 scf7180000395164:22391-22458 + CCAAGATATGGA------G----------TCACCTG--------CA------AA--GGAAGAAT---------------------------AAAACGAAAAT----------------------A-----TCAAG----------CCCG--C------------------------ACAAGAAAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAA----------------------------------
droKik1 scf7180000298444:4236-4284 + CCCTACCGACAGG--------------GA----GAA-----G---CA------GA-TG---ACCAC--------------------G----CCGA---AGGCGCGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------C----------------------------------------------------------------------------------------------------------------AATG----------------------------------
droFic1 scf7180000449847:139-252 + CCAAGAGGAAGA------CA---------TCGACAG--------TGA------GCCCG---AAAGC--------------------G----CCGA---GGACATTGCCAAATG-------------------------AACCAGG--T-TTGGGGAAAA------------------------CGGG-TAG----------------------------------ACCTAGTAAACTT-------------------------GTAATCCTAACGTTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------CTCA----------------------------------
droEle1 scf7180000491078:7583-7643 - ACACAAGACCTC------G----------GTACAGA--------CA------AG-------------------------CAAGGACAACA-----CGGGCAT----------------------G-----CAACG-----------------------------ACAAA---------------------------------------------------------------------------------------------------------------AA-------------------G-----------------------T----------------------------------------------------------------------------------------------------------------GCGG----------------------------------
droRho1 scf7180000759661:5732-5947 + CCGGGACACAGA------G----------ACAGGGG--------AA------GG--CGAA-GAAGT--------------------A----AC-----------------------------GTAAGGT---------------A--------------------------------------------TCACTAACTAACATCAAGTATCTTAAGATTGTAA----------------------------------------------------------------------CTA----GATATAAGGCGTTCATTGTAAGCTGCACCAGTAGGC---AGGGAAATCTTAGGGTCAGTTACATAAAGTAAGTTATCTACC----CACTACAGATACTATGGATGAAGGAGAGTCAGACTCCACTCAAGAGTGGACCGGCGA----------------------------------
droBia1 scf7180000302233:12885-12966 + CAGAACA--CAAGCGAGCAGCTACAAGCA-----GAT-----------------------------ACATT------------------A-----TAC------------GAAAAGCAACAG-TAAAACCTTAAA----------GAGT--C------------TCAAA------------AAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAC----------------------------------
droTak1 scf7180000414216:864-971 - CCACGAGGATGA------CA---------TCGACAG--------CGA------AC-CG---AAGAC--------------------T----CCCA---AGACACCAC------------------------CAAG-TAAACCAGG--T-ATTGGGA------G-------GG----------------T--------------------------------AGTTATCTAGTAAACTT-------------------------GTA------ACTTTAACTT-------------------G-----------------------T----------------------------------------------------------------------------------------------------------------AAGA----------------------------------
droEug1 scf7180000407272:20201-20233 + CCATTAATGCGA------C-----GAGGA---------CGACGACG------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------C----------------------------------------------------------------------------------------------------------------ACCA----------------------------------
dm3 chrU:5887518-5887600 + GCGCGGGCGCCG------G-------------------------CGGGCCAC---------GAGACTTCGAGGAATAAACAAAAAAAAAATAAA-------C----------------------A-----CAAGA---------GT---TGTGGAGGAA------------------------CGGGG-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAC----------------------------------
droSec2 scaffold_126:17786-17858 + CCACGAGACTTC------G---------------------------------------------------AGGAATAAACAAAAACAAAAGAAA-------A----------AC---AAC--ACAAAAC---------------GT---TGGGGTGAAA-----------------------AGGGG--GA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAC----------------------------------
droYak3 v2_chrUn_331:4144-4282 + GCGCGGGCGCCG------G-------------------------CAGACCAG---------AGGACACCGA-----------------AA------GC------------GAAAAACCACAA-TAAAAC---------------CCTTTCGCGAAG-AA-----------------------GGGGG--GA-----------------------------------------------AGACAATACAGG-------------GTA-TCGA-----AAAGTCGCAAGTCGCAAAT---------------------------------------------------------------------AAACACACTCACACACA----CACAAA-----------------------------------------------AGGC----------------------------------
droEre2 scaffold_4929:23452247-23452281 - CCGGGAAGCGCG------G----------GCGCCGG--------CGGGCCAG---------AAGAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC----------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CCACGAGCCCCC------GGCGACGAGGA---------GGAT-------------------------CAAG------------------A-----TAC------------GAAC----------A-----CCAGG------------------------------------ATAGCGTAAGGAGCGGGAAA-----------------------------------------------ACTTATTACCTT-------------GTA---TTAACTTTAAGTCACATGA----ACTAGGCAGACATCAGG----CACTATACGCAG--ACAGTAGGCACTAGGCAAAGCGCAGG--------CATCAAGTA-GTTATTCCCCATGGTCTTACTAATATTACGATTAAA------CCACACCCCACAGAGCAACTGAGCGGCAACCCCGACGCGCTCGTCGGGAAGACGGCAACCGCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................TACGATTAAA------CCACACCCCACAGAGC...............................................26110.0010800011
................................................................................................................................................................................................................................................................................................................................................................G--------CATCAAGTA-GTTATTCCCCATG............................................................................................2314.004300010
.............................................................................................................................................................................................................................................................................................................................................................................................................TACGATTAAA------CCACACCCCACAGAGCA..............................................2713.003300000
...................................................................CAAG------------------A-----TAC------------GAAC----------A-----CCAGG------------------------------------ATAGCGT..........................................................................................................................................................................................................................................................................................................2513.003300000
.............................................................................................................................................................................................................................................................................................................................................................................................................TACGATTAAA------CCACACCCCACAGAGCAAC............................................2913.003300000
...................................................................CAAG------------------A-----TAC------------GAAC----------A-----CCAGG------------------------------------ATAGC............................................................................................................................................................................................................................................................................................................2313.003200010
................................................................................................................................................................................................................................................................................................................................................................G--------CATCAAGTA-GTTATTCCCCATGG...........................................................................................2412.002200000
.................................................................................................................................................................................................................................................................................................................................GCAG--ACAGTAGGCACTAGGC.....................................................................................................................................2012.002110000
................................................................................................................................................................................................................................................................................................................................................................G--------CATCAAGTA-GTTATTCCCCATGGTCT........................................................................................2712.002200000
...................................................................................................................................................................................................................................................TTACCTT-------------GTA---TTAACTTTAAGTCACATG.............................................................................................................................................................................................2812.002200000
............................................................................................................................................................................................................................................................................................................................................................................CAAGTA-GTTATTCCCCATGGTCTTAC.....................................................................................2611.001000001
................................................................................................................................................................................................................................................................................................................................................................G--------CATCAAGTA-GTTATTCCCCAT.............................................................................................2211.001100000
...............................................................................................................................................................................................................................................................................................A----ACTAGGCAGACATCAGG----CACTAT.............................................................................................................................................................2421.002200000
...................................................................CAAG------------------A-----TAC------------GAAC----------A-----CCAGG------------------------------------ATAGCG...........................................................................................................................................................................................................................................................................................................2411.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................TACGATTAAA------CCACACCCCACAGA.................................................2411.001100000
...................................................................CAAG------------------A-----TAC------------GAAC----------A-----CCAGG------------------------------------ATAGCGTA.........................................................................................................................................................................................................................................................................................................2611.001100000
...................................................................................................................................................................................................................................................TTACCTT-------------GTA---TTAACTTTAAGTCACAT..............................................................................................................................................................................................2711.001100000
................................................................................................................................................................................................................................................................................................................................................................G--------CATCAAGTA-GTTATTCCCCATGGTCTTA......................................................................................2911.001100000
............................................................................................................................................................................................................................................................................................................................................................................CAAGTA-GTTATTCCCCATGGTCT........................................................................................2311.001100000
......................................................................................................................................................................................................................................................................................................TAGGCAGACATCAGG----CACTATACGCAG--AC...................................................................................................................................................2911.001000010
................................................................................................................................................................................................................................................................................................................................................................G--------CATCAAGTA-GTTATTCCCC...............................................................................................2011.001100000
................................................................................................................................................................................................................................................................................................................TCAGG----CACTATACGCAG--ACAGTAGGCAC..........................................................................................................................................2811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................CATCAAGTA-GTTATTCCCCATGG...........................................................................................2311.001100000
...................................................................CAAG------------------A-----TAC------------GAAC----------A-----CCAGG------------------------------------ATAGCGTAA........................................................................................................................................................................................................................................................................................................2711.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................TTACGATTAAA------CCACACCCCACA...................................................2311.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................ATTACGATTAAA------CCACACCCCACAGA.................................................2611.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................TACGATTAAA------CCACACCCCACAGAGCAA.............................................2811.001100000
............................................................................................................................................................................TAGCGTAAGGAGCGGGAAA-----------------------------------------------AC............................................................................................................................................................................................................................................2111.001000010
................................................................................................................................................................................................................................................................................................................................................................G--------CATCAAGTA-GTTATTCCCCATGGTC.........................................................................................2611.001100000
............................................................................................................................................................................................................................................................................................................................TATACGCAG--ACAGTAGGCACTAGGC.....................................................................................................................................2511.001100000
............................................................................................................................................................................................................................................................................................................................................................................CAAGTA-GTTATTCCCCATGGTC.........................................................................................2211.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................TACGATTAAA------CCACACCCCACA...................................................2211.001100000
...................................................................................................................................................................................................................................................TTACCTT-------------GTA---TTAACTTTAAGTCACA...............................................................................................................................................................................................2611.001100000
......................................................................................................................................G------------------------------------ATAGCGTAAGGAGCGGGAA..............................................................................................................................................................................................................................................................................................2011.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................TACGATTAAA------CCACACCCCAC....................................................2111.001100000
................................................................................................................................................................................................................................................................................................................................................................G--------CATCAAGTA-GTTATTCCCCATGGT..........................................................................................2511.001100000
................................................................................................................................................................................................................................................................................................................................................................G--------CATCAAGTA-GTTATTCCCCATGGTCC........................................................................................2711.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................ATTACGATTAAA------CCACACCCCACA...................................................2411.001100000
......................................................................................................................................................................................................................................................................................................TAGGCAGACATCAGG----CACTATACGCA........................................................................................................................................................2611.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................ATTACGATTAAA------CCACACCCCACAGAGC...............................................2811.001000010
....................................................................................................................................................................................................................................................................................TAAGTCACATGA----ACTAGGCAGACATC..........................................................................................................................................................................2620.501000010
...................................................................................................................................................................................................................................................................................TTAAGTCACATGA----ACTAGGCAGACATC..........................................................................................................................................................................2720.501100000
..........................................................................................................................................................................................................................................................................................ACATGA----ACTAGGCAGACATCAGG----CACTA..............................................................................................................................................................2820.501100000
...........................................................................................................................................................................................................................................................................................CATGA----ACTAGGCAGACATCAGG----...................................................................................................................................................................2220.501100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCGGCAACCCCGACGCGCTCGTCGG................2820.501100000
..........................................................................................................................................................................................................................................................................................ACATGA----ACTAGGCAGACATCAGG----C..................................................................................................................................................................2420.501100000
.........................................................................................................................................................................................................................................................T-------------GTA---TTAACTTTAAGTCACA...............................................................................................................................................................................................2020.501100000
.............................................................................................................................................................................................................................................................................................TGA----ACTAGGCAGACATCAGG----CACTATA............................................................................................................................................................2720.501100000
.............................................................................................................................................................................................................................................................................TTAACTTTAAGTCACATGA----ACTAGGCA................................................................................................................................................................................2720.501100000
droVir3
CGACGAGCGACG------A-------AGA---------AGACGAAG------A------------T-CCAG-----------------------------------------GC----------A-----GAGA----------GA---TATGGTGCTTAGGT-----------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGG----------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................A---------AGACGAAG------A------------T-CCAG-----------------------------------------GC----------A-----GAGA----------G...........................................................................................................................................................................................................................................................................................................................................2311.001000010000000000000000000000000000000000000000000000000000000000
............................................AG------A------------T-CCAG-----------------------------------------GC----------A-----GAGA----------GA---TATGGTG................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000001000000000000000000000000000000000000000
.........................................CGAAG------A------------T-CCAG-----------------------------------------GC----------A-----GAGA----------G...........................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000100000000000000000000000000000000000
............................A---------AGACGAAG------A------------T-CCAG-----------------------------------------GC----------A-----GA........................................................................................................................................................................................................................................................................................................................................................2011.001000001000000000000000000000000000000000000000000000000000000000
..........................AGA---------AGACGAAG------A------------T-CCAG-----------------------------------------G...........................................................................................................................................................................................................................................................................................................................................................................18200.153000000030000000000000000000000000000000000000000000000000000000
......GCGACG------A-------AGA---------AGACGAAG------A------------T-C........................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000100000000000000000000000000
CGACGAGCGACG------A-------AGA---------AG....................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000100000000000000000000000000000000000000
....GAGCGACG------A-------AGA---------AGACGAAG------A------------T-CTTC-----------------------------------------............................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000001000000000000000000000000000000000
droGri2
CAACGACCGGAA------GG---------ATACGGG--------TGA------GC-----------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----AAATTCCAAA-----------------------C----------------------------------------------------------------------------------------------------------------ACTA----------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........GGAA------GG---------ATACGGG--------TGA------GC-----------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----AAAT....................................................................................................................................................................................2620.50110
droWil2
ACAACGAGGAT--------------------------------------------------------CCGG------------------G-----TTC------------GAAT----------C-----CCAGG------------------------------------CTAGTGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGA----------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................TC------------GAAT----------C-----CCAGG------------------------------------CTAGTGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGA----------------------------------24200.25505000
.................................................................................................C------------GAAT----------C-----CCAGG------------------------------------CTAGTGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGA----------------------------------23200.05101000
.CAACGAGGAT--------------------------------------------------------CCGG------------------G-----TTC------------GAAT----------C-----C.........................................................................................................................................................................................................................................................................................................................................................24200.05100010
..........T--------------------------------------------------------CCGG------------------G-----TTC------------GAAT----------C-----CCAGG------------------------------------CTAGTGT..........................................................................................................................................................................................................................................................................................................26200.05101000
.........AT--------------------------------------------------------CCGG------------------G-----TTC------------GAAT----------C-----CCAGG------------------------------------CTAG.............................................................................................................................................................................................................................................................................................................24200.05101000
dp5
CCACGACAACGAGCACTCCCCCACCAGCG-----AAG----------------A--CGAAGAAGAC--------------------G----ACGA---AGACACGAT------------------------GAGGACGACCCCAG--C-ACCAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC----------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..ACGACAACGAGCACTCCCCCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..ACGACAACGAGCACTCCCCCACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
.........CGAGCACTCCCCCACCAGCG-----AAG----------------A--CGAA................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000010
....................................G----------------A--CGAAGAAGAC--------------------G----ACGA---AGACACGA..................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
droPer2
CCACGACCACGAGCACACCCCCACCAGCG-----ACGACGAC------------------------------------------------------------GAACCCACCCT--------------------------------------CACCA------G-------CG----------------T--------------------------------ACACACGCAGTAAGATAGCTTAACTCCCCTTAAGGGATTAGAGTA---A----------------GA----AATAGCCAGAAA--------------------------------------------------------------------------------------------------------------------------------------CTAG----------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................G-----ACGACGAC------------------------------------------------------------GAACCCACCCT--------------------------------------CACCA------G-------C.................................................................................................................................................................................................................................................................................................................2760.171100000
.........................................................................................................................................................................................................................................AGATAGCTTAACTCCCCTTAAGG............................................................................................................................................................................................................................23200.102020000
.............................................................................................................................................................................................................................................................AGGGATTAGAGTA---A----------------GA----AATAG...................................................................................................................................................................................21200.051010000
....................................................................................................................................................................................................................................CAGTAAGATAGCTTAACTCC....................................................................................................................................................................................................................................20200.051010000
....................................................................................................................................................................................................................................CAGTAAGATAGCTTAACTCCCCT.................................................................................................................................................................................................................................23200.051010000
.........................................................................................................................................................................................................................................AGATAGCTTAACTCCCCTTAA..............................................................................................................................................................................................................................21200.051010000
....................................................................................................................................................................................................................................CAGTAAGATAGCTTAACTCCC...................................................................................................................................................................................................................................21200.051010000
.........................................................................................................................................................................................................................................AGATAGCTTAACTCCCCTTAAGA............................................................................................................................................................................................................................23200.051010000
droAna3
CCACAAGCGATG------A----------CCAACAA--------CG------ACC---TAGAAGAC--------------------G----AC-----------------------------GTAAGTC---------------C------------TCAAGTCACAAAGGGTAATGTT-------------------------------------------------------------------------AAGAAACATTTGTA---ATAAATTTAAAT--------------------CAA---------------------C----------------------------------------------------------------------------------------------------------------TAGG----------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CCAAGATATGGA------G----------TCACCTG--------CA------AA--GGAAGAAT---------------------------AAAACGAAAAT----------------------A-----TCAAG----------CCCG--C------------------------ACAAGAAAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAA----------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CCCTACCGACAGG--------------GA----GAA-----G---CA------GA-TG---ACCAC--------------------G----CCGA---AGGCGCGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----------------------C----------------------------------------------------------------------------------------------------------------AATG----------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CCAAGAGGAAGA------CA---------TCGACAG--------TGA------GCCCG---AAAGC--------------------G----CCGA---GGACATTGCCAAATG-------------------------AACCAGG--T-TTGGGGAAAA------------------------CGGG-TAG----------------------------------ACCTAGTAAACTT-------------------------GTAATCCTAACGTTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------CTCA----------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ACACAAGACCTC------G----------GTACAGA--------CA------AG-------------------------CAAGGACAACA-----CGGGCAT----------------------G-----CAACG-----------------------------ACAAA---------------------------------------------------------------------------------------------------------------AA-------------------G-----------------------T----------------------------------------------------------------------------------------------------------------GCGG----------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CCGGGACACAGA------G----------ACAGGGG--------AA------GG--CGAA-GAAGT--------------------A----AC-----------------------------GTAAGGT---------------A--------------------------------------------TCACTAACTAACATCAAGTATCTTAAGATTGTAA----------------------------------------------------------------------CTA----GATATAAGGCGTTCATTGTAAGCTGCACCAGTAGGC---AGGGAAATCTTAGGGTCAGTTACATAAAGTAAGTTATCTACC----CACTACAGATACTATGGATGAAGGAGAGTCAGACTCCACTCAAGAGTGGACCGGCGA----------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CAGAACA--CAAGCGAGCAGCTACAAGCA-----GAT-----------------------------ACATT------------------A-----TAC------------GAAAAGCAACAG-TAAAACCTTAAA----------GAGT--C------------TCAAA------------AAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAC----------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CCACGAGGATGA------CA---------TCGACAG--------CGA------AC-CG---AAGAC--------------------T----CCCA---AGACACCAC------------------------CAAG-TAAACCAGG--T-ATTGGGA------G-------GG----------------T--------------------------------AGTTATCTAGTAAACTT-------------------------GTA------ACTTTAACTT-------------------G-----------------------T----------------------------------------------------------------------------------------------------------------AAGA----------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CCATTAATGCGA------C-----GAGGA---------CGACGACG------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------C----------------------------------------------------------------------------------------------------------------ACCA----------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GCGCGGGCGCCG------G-------------------------CGGGCCAC---------GAGACTTCGAGGAATAAACAAAAAAAAAATAAA-------C----------------------A-----CAAGA---------GT---TGTGGAGGAA------------------------CGGGG-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAC----------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................AAA-------C----------------------A-----CAAGA---------GT---TGTGGAGG...............................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................ACTTCGAGGAATAAACAAAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................CTTCGAGGAATAAACAAAA........................................................................................................................................................................................................................................................................................................................................................................................................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................CTTCGAGGAATAAACAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................ACTTCGAGGAATAAACAAAA........................................................................................................................................................................................................................................................................................................................................................................................................2021.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TTCGAGGAATAAACAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................2530.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TTCGAGGAATAAACAAAAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................ACTTCGAGGAATAAACAAAAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GCGCGGGCGCCG------G-------------------------CGGGCCTA---------...............................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GAGACTTCGAGGAATAAACAAAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GACTTCGAGGAATAAACAAAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................AGACTTCGAGGAATAAACAAAA........................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TTCGAGGAATAAACAAAAAAAAAGA.................................................................................................................................................................................................................................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TTCGAGGAATAAACAAAAAAAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................ACTTCGAGGAATAAACAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................AGACTTCGAGGAATAAACA...........................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................CTTCGAGGAATAAACAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSec2
CCACGAGACTTC------G---------------------------------------------------AGGAATAAACAAAAACAAAAGAAA-------A----------AC---AAC--ACAAAAC---------------GT---TGGGGTGAAA-----------------------AGGGG--GA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAC----------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....AGACTTC------G---------------------------------------------------AGGAATAAACAAAAACAAA...................................................................................................................................................................................................................................................................................................................................................................................................2712.0022000
.....AGACTTC------G---------------------------------------------------AGGAATAAACA...........................................................................................................................................................................................................................................................................................................................................................................................................1940.2511000
.....AGACTTC------G---------------------------------------------------AGGAATAAACAAAAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................2540.2510010
droYak3
GCGCGGGCGCCG------G-------------------------CAGACCAG---------AGGACACCGA-----------------AA------GC------------GAAAAACCACAA-TAAAAC---------------CCTTTCGCGAAG-AA-----------------------GGGGG--GA-----------------------------------------------AGACAATACAGG-------------GTA-TCGA-----AAAGTCGCAAGTCGCAAAT---------------------------------------------------------------------AAACACACTCACACACA----CACAAA-----------------------------------------------AGGC----------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................AACCACAA-TAAAAC---------------CCTTTCGCGAAG-...............................................................................................................................................................................................................................................................................................................................2611.00101000000000
.............................................................................................................................................................................................GA-----------------------------------------------AGACAATACAGG-------------GTA-TCGA-----AA......................................................................................................................................................................................................2320.50101000000000
...................................................................................................................ACCACAA-TAAAAC---------------CCTTTCGCGAAG-...............................................................................................................................................................................................................................................................................................................................25120.42504000100000
...................................................................................................................ACCACAA-TAAAAC---------------CCTTTCGCGA..................................................................................................................................................................................................................................................................................................................................23120.33404000000000
...................................................................................................................ACCACAA-TAAAAC---------------CCTTTCGCGAAG-A..............................................................................................................................................................................................................................................................................................................................26120.33404000000000
..............................................................................................................................................................................................................................................................................................GTCGCAAAT---------------------------------------------------------------------AAACACACTCACACA.................................................................................................2440.25101000000000
...................................................................................................................ACCACAA-TAAAAC---------------CCTTTCGCGAA.................................................................................................................................................................................................................................................................................................................................24120.25303000000000
....................................................................................................................CCACAA-TAAAAC---------------CCTTTCGCGAAG-...............................................................................................................................................................................................................................................................................................................................24120.25303000000000
....................................................................................................................................................................................................................................................................................................AAT---------------------------------------------------------------------AAACACACTCACACACA----...........................................................................................2050.20101000000000
...................................................................................................................ACCACAA-TAAAAC---------------CCTTTCGCG...................................................................................................................................................................................................................................................................................................................................22120.17202000000000
.....................................................................................................................CACAA-TAAAAC---------------CCTTTCGCGAAG-AA-----------------------G.....................................................................................................................................................................................................................................................................................................26110.09101000000000
...................................................................................................................ACCACAA-TAAAAC---------------CCTTTCGCGAAG-AA-----------------------G.....................................................................................................................................................................................................................................................................................................28110.09101000000000
.....................................................................................................................CACAA-TAAAAC---------------CCTTTCGCGA..................................................................................................................................................................................................................................................................................................................................21120.08101000000000
...................................................................................................................ACCACAA-TAAAAC---------------CCTTTCGCGAAG-AA-----------------------......................................................................................................................................................................................................................................................................................................27120.08101000000000
..................................................................................................................................................TTTCGCGAAG-AA-----------------------GGGGG--GA-----------------------------------------------AGAC..........................................................................................................................................................................................................................................23190.05100100000000
......................................................................................................................ACAA-TAAAAC---------------CCTTTCGCGA..................................................................................................................................................................................................................................................................................................................................20200.05101000000000
.......................................................................................................................CAA-TAAAAC---------------CCTTTCGCGAAG-...............................................................................................................................................................................................................................................................................................................................21200.05100100000000
........................................................................................................................AA-TAAAAC---------------CCTTTCGCGAAG-A..............................................................................................................................................................................................................................................................................................................................21200.05101000000000
.........................................................................................................................A-TAAAAC---------------CCTTTCGCGAAG-A..............................................................................................................................................................................................................................................................................................................................20200.05101000000000
........................................................................................................................AA-TAAAAC---------------CCTTTCGCGA..................................................................................................................................................................................................................................................................................................................................18200.05101000000000
...........................................................................................................................TAAAAC---------------CCTTTCGCGAAG-AT-----------------------T.....................................................................................................................................................................................................................................................................................................21200.05101000000000
droEre2
CCGGGAAGCGCG------G----------GCGCCGG--------CGGGCCAG---------AAGAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC----------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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Generated: 05/18/2015 at 02:06 AM