dmo_2197

intron [Dmoj\GI14200-in]; CDS [Dmoj\GI14200-cds]; exon [dmoj_GLEANR_14475:2]; CDS [Dmoj\GI14200-cds]; exon [dmoj_GLEANR_14475:3]

##################################################-------------------------------------------------################################################## AACCCGTTCGCGCCCGCAGCCAAACGGATTGCGGCCACGATGCGGCCCTGGTGTATAATGCTCAGAGCCAGTTCGCGTAACTCCCGCCGGATCACGTAGAGATATCTGGGTGCCAGCGGTGTCTCACGTCAGACTCTGGCGTATAATGC ************************************************..........((.............(((...(((....)))..))).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V110 male body	V041 embryo
............................................................................................CACGTAGAGATATCTGGGTGCCAGC................................	25	0	1	14.00	14	9	5	0	0
......................................................ATAATGCTCAGAGCCAGTTCGCGTAAC....................................................................	27	0	1	11.00	11	1	10	0	0
......................................................ATAATGCTCAGAGCCAGTTCGCGTA......................................................................	25	0	1	5.00	5	2	0	2	1
...........................................................................................TCACGTAGAGATATCTGGGTGCCAGC................................	26	0	1	4.00	4	3	1	0	0
......................................................ATAATGCTCAGAGCCAGTTCGCGTAA.....................................................................	26	0	1	3.00	3	2	0	1	0
...............................................................................................GTAGAGATATCTGGGTGCCAGCGG..............................	24	0	1	3.00	3	3	0	0	0
......................................................ATAATGCTCAGAGCCAGTTCGCGT.......................................................................	24	0	1	2.00	2	0	2	0	0
..........................................................................................AACACGTAGAGATATCTGGGTGCCAG.................................	26	1	1	2.00	2	2	0	0	0
...........................................................................................TCACGTAGAGATATCTGGGTGCCAG.................................	25	0	1	2.00	2	2	0	0	0
......TTCGCGCCCGCAGCCAAACGGATTGCG....................................................................................................................	27	0	1	1.00	1	1	0	0	0
............................................................................................CACGTAGAGATATCTGGGTGCCAG.................................	24	0	1	1.00	1	1	0	0	0
........................................................AATGCTCAGAGCCAGTTCGCGTAACTCC.................................................................	28	0	1	1.00	1	0	0	1	0
...........................................................................................TCACGTAGAGATATCTGGGTGCCAGCGG..............................	28	0	1	1.00	1	1	0	0	0
......................................................ATAATGCTCAGACCCAGTTCGCGTAA.....................................................................	26	1	1	1.00	1	0	1	0	0
......TTCGCGCCCGCAGCCAAACGGATTGCGGC..................................................................................................................	29	0	1	1.00	1	1	0	0	0
.......TCGCGCCCGCAGCCAAACGGATTGC.....................................................................................................................	25	0	1	1.00	1	0	1	0	0
.....................................................TATAATGCTCAGAGCCAGTTCGCGTAAC....................................................................	28	0	1	1.00	1	0	1	0	0
............................................................................................CACGTAGAGATATCTGGGTGCCAGCG...............................	26	0	1	1.00	1	0	0	0	1
..............................................................................................................TTCCAGCAGTGTCTCACGTCAGACTC.............	26	2	1	1.00	1	0	1	0	0
.....................................................TATAATGCTCAGAGCCAGTTCGCGTA......................................................................	26	0	1	1.00	1	0	0	1	0
..............................................................................................................TGCCAGCGGTGTCTCACGTCAGA................	23	0	1	1.00	1	1	0	0	0
...................................................TGTATAATGCTCAGAGCCAGTTCGCG........................................................................	26	0	1	1.00	1	1	0	0	0
..........................................................................................ATCACGTAGAGATATCTGGGTGCCAGC................................	27	0	1	1.00	1	0	0	1	0
..........................................................................................TTCACGTAGAGATATCTGGGTGCCAG.................................	26	1	1	1.00	1	1	0	0	0
................................................................................................TAGAGATATCTGGGTGCCAGCGG..............................	23	0	1	1.00	1	1	0	0	0
...........................................................................................TCACGTACAGATATCTGGGTCCCAGC................................	26	2	1	1.00	1	0	1	0	0
...........................................................................................TCACGTAGAGATATCTGGGGGCCAGC................................	26	1	1	1.00	1	1	0	0	0
........................................................AATGCTCAGAGCCAGTTCGCGTAAC....................................................................	25	0	1	1.00	1	0	1	0	0
........................................................................................................................GTCTCACGTCAGACTCTGGCGT.......	22	0	1	1.00	1	1	0	0	0
......................................................ATAATCCTCAGAGCCAGTTCGCGTAAC....................................................................	27	1	1	1.00	1	0	1	0	0
................................................................................................TAGAGATATCTGGGTGCCAGCGGT.............................	24	0	1	1.00	1	1	0	0	0
............................................................................................CACGTAGAGATATCTGGGTGCC...................................	22	0	3	0.67	2	0	2	0	0
........................................................................................................................GTCTCACGTCAGACTCTCTCC........	21	3	2	0.50	1	1	0	0	0
......................................................ATAATGCTCAGAGCCAGTTCGCG........................................................................	23	0	2	0.50	1	1	0	0	0
......................................................TGAATGCTCAGAGCCAGTTCGCATAAC....................................................................	27	3	2	0.50	1	0	1	0	0
............................................................................................CACGTAGAGATATCTGGGTG.....................................	20	0	3	0.33	1	1	0	0	0
...........................................................................................TCACGTAGAGATATCTGGGT......................................	20	0	3	0.33	1	1	0	0	0
.............................................................................................ACGTAGAGATATCTGGGTGCC...................................	21	0	3	0.33	1	1	0	0	0
......................................................ATAATGCTCAGAGCCAGTTC...........................................................................	20	0	5	0.20	1	1	0	0	0
...............................................................................................................................GTCAGACTCTGGCGTATTTG..	20	3	17	0.06	1	1	0	0	0

##################################################-------------------------------------------------##################################################
AACCCGTTCGCGCCCGCAGCCAAACGGATTGCGGCCACGATGCGGCCCTGGTGTATAATGCTCAGAGCCAGTTCGCGTAACTCCCGCCGGATCACGTAGAGATATCTGGGTGCCAGCGGTGTCTCACGTCAGACTCTGGCGTATAATGC
**************************************************..........((.............(((...(((....)))..))).))**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V110
male body

V041
embryo

............................................................................................CACGTAGAGATATCTGGGTGCCAGC................................

14.00

......................................................ATAATGCTCAGAGCCAGTTCGCGTAAC....................................................................

11.00

......................................................ATAATGCTCAGAGCCAGTTCGCGTA......................................................................

5.00

...........................................................................................TCACGTAGAGATATCTGGGTGCCAGC................................

4.00

......................................................ATAATGCTCAGAGCCAGTTCGCGTAA.....................................................................

3.00

...............................................................................................GTAGAGATATCTGGGTGCCAGCGG..............................

3.00

......................................................ATAATGCTCAGAGCCAGTTCGCGT.......................................................................

2.00

..........................................................................................AACACGTAGAGATATCTGGGTGCCAG.................................

2.00

...........................................................................................TCACGTAGAGATATCTGGGTGCCAG.................................

2.00

......TTCGCGCCCGCAGCCAAACGGATTGCG....................................................................................................................

1.00

............................................................................................CACGTAGAGATATCTGGGTGCCAG.................................

1.00

........................................................AATGCTCAGAGCCAGTTCGCGTAACTCC.................................................................

1.00

...........................................................................................TCACGTAGAGATATCTGGGTGCCAGCGG..............................

1.00

......................................................ATAATGCTCAGACCCAGTTCGCGTAA.....................................................................

1.00

......TTCGCGCCCGCAGCCAAACGGATTGCGGC..................................................................................................................

1.00

.......TCGCGCCCGCAGCCAAACGGATTGC.....................................................................................................................

1.00

.....................................................TATAATGCTCAGAGCCAGTTCGCGTAAC....................................................................

1.00

............................................................................................CACGTAGAGATATCTGGGTGCCAGCG...............................

1.00

..............................................................................................................TTCCAGCAGTGTCTCACGTCAGACTC.............

1.00

.....................................................TATAATGCTCAGAGCCAGTTCGCGTA......................................................................

1.00

..............................................................................................................TGCCAGCGGTGTCTCACGTCAGA................

1.00

...................................................TGTATAATGCTCAGAGCCAGTTCGCG........................................................................

1.00

..........................................................................................ATCACGTAGAGATATCTGGGTGCCAGC................................

1.00

..........................................................................................TTCACGTAGAGATATCTGGGTGCCAG.................................

1.00

................................................................................................TAGAGATATCTGGGTGCCAGCGG..............................

1.00

...........................................................................................TCACGTACAGATATCTGGGTCCCAGC................................

1.00

...........................................................................................TCACGTAGAGATATCTGGGGGCCAGC................................

1.00

........................................................AATGCTCAGAGCCAGTTCGCGTAAC....................................................................

1.00

........................................................................................................................GTCTCACGTCAGACTCTGGCGT.......

1.00

......................................................ATAATCCTCAGAGCCAGTTCGCGTAAC....................................................................

1.00

................................................................................................TAGAGATATCTGGGTGCCAGCGGT.............................

1.00

............................................................................................CACGTAGAGATATCTGGGTGCC...................................

0.67

........................................................................................................................GTCTCACGTCAGACTCTCTCC........

0.50

......................................................ATAATGCTCAGAGCCAGTTCGCG........................................................................

0.50

......................................................TGAATGCTCAGAGCCAGTTCGCATAAC....................................................................

0.50

............................................................................................CACGTAGAGATATCTGGGTG.....................................

0.33

...........................................................................................TCACGTAGAGATATCTGGGT......................................

0.33

.............................................................................................ACGTAGAGATATCTGGGTGCC...................................

0.33

......................................................ATAATGCTCAGAGCCAGTTC...........................................................................

0.20

...............................................................................................................................GTCAGACTCTGGCGTATTTG..

0.06

TTGGGCAAGCGCGGGCGTCGGTTTGCCTAACGCCGGTGCTACGCCGGGACCACATATTACGAGTCTCGGTCAAGCGCATTGAGGGCGGCCTAGTGCATCTCTATAGACCCACGGTCGCCACAGAGTGCAGTCTGAGACCGCATATTACG ************************************************..........((.............(((...(((....)))..))).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	M060 embryo	V049 head	V041 embryo
............................................................................................................CCACGGTCGCCACAGAGTGCAG...................	22	0	1	3.00	3	1	2	0	0
.........................................CGCCGGGACCACATATTACGAGT.....................................................................................	23	0	1	3.00	3	3	0	0	0
..................................................................................GGGCGGCCTAGTGCATCTCTATA............................................	23	0	1	2.00	2	2	0	0	0
.....................................GCTACGCCGGGACCACATATTACGAGT.....................................................................................	27	0	1	2.00	2	2	0	0	0
......................................CTACGCCGGGACCACATATTACGAG......................................................................................	25	0	1	2.00	2	2	0	0	0
..........................................GCCGGGACCACATATTACGAGT.....................................................................................	22	0	1	2.00	2	2	0	0	0
........................................ACGCCGGGACCACATATTACGAGT.....................................................................................	24	0	1	2.00	2	2	0	0	0
...................................................................................................................CGCCACAGAGTGCAGTCTGAGAC...........	23	0	1	2.00	2	2	0	0	0
....................................TGCTACGCCGGGACCACATATTACG........................................................................................	25	0	1	1.00	1	1	0	0	0
......................................CTACGCCGGGACCACATATTACGAGT.....................................................................................	26	0	1	1.00	1	1	0	0	0
...................................................................................GGCGGCCTAGTGCATCTCTATAG...........................................	23	0	1	1.00	1	1	0	0	0
...........................................................................................................CCCACGGTCGCCACAGAGTGCAGT..................	24	0	1	1.00	1	0	1	0	0
............................................CGGGACCACATATTACGAGT.....................................................................................	20	0	1	1.00	1	1	0	0	0
..................................................................CGGTCAAGCGCATTGAGGGCGGCCT..........................................................	25	0	1	1.00	1	1	0	0	0
................................................................................................................GGTCGCCACAGAGTGCAGTCTGAGAC...........	26	0	1	1.00	1	1	0	0	0
.................................................................CCGGTCAAGCGCATTGAGGGC...............................................................	21	1	1	1.00	1	0	1	0	0
.........................................CGCCGGGACCACATATTACGA.......................................................................................	21	0	1	1.00	1	1	0	0	0
.................................................................................................................GTCGCCACAGAGTGCAGTCTGAGAC...........	25	0	1	1.00	1	1	0	0	0
...........................................................................................................CCCACGGTCGCCACAGAGTGCAG...................	23	0	1	1.00	1	1	0	0	0
...........................................CCGGGACCACATATTACGAGT.....................................................................................	21	0	1	1.00	1	1	0	0	0
.............................................................................................................CACGGTCGCCACAGAGTGCAG...................	21	0	1	1.00	1	1	0	0	0
..................................................................................................................TCGCCACAGAGTGCAGTCTGAGAC...........	24	0	1	1.00	1	1	0	0	0
.TGGGCAAGCCCGGGCGGGGGTT..............................................................................................................................	22	3	1	1.00	1	0	0	1	0
...........................................................................GCATTGAGGGCGGCCTAGTGCATCTC................................................	26	0	1	1.00	1	1	0	0	0
....................................................................................................................GCCACAGAGTGCAGTCTGAGAC...........	22	0	1	1.00	1	1	0	0	0
...................................................................................GGCGGCCTAGTGCATCTCT...............................................	19	0	1	1.00	1	1	0	0	0
......................................CTACGCCGGGACCACATATTACG........................................................................................	23	0	1	1.00	1	1	0	0	0
..........................................................................................................ACCCACGGTCGCCACAGAGTGCAG...................	24	0	1	1.00	1	1	0	0	0
.................................................................................TGGGCGGCCTAGTGCATCTC................................................	20	1	1	1.00	1	0	0	0	1
.................................................CCACATATTACGAGTCTCGGTCAAGCG.........................................................................	27	0	1	1.00	1	1	0	0	0
.....................................TATACGCCGGGACCACATATTACGAGT.....................................................................................	27	2	1	1.00	1	1	0	0	0
..GGGCAAGCGCGGGCGTCGGTTTGCCTA........................................................................................................................	27	0	1	1.00	1	1	0	0	0
........................................ACGCCGGGACCACATATTACGAG......................................................................................	23	0	1	1.00	1	1	0	0	0
.........................................................................................................GACCCACGGTCGCCACAGAGTGCAG...................	25	0	1	1.00	1	0	1	0	0
TTGGGCAAGCACGGGCGCGGGTT..............................................................................................................................	23	3	1	1.00	1	0	0	1	0
...............CGTCGGTTTGCCTAACGCCGGTGCTA............................................................................................................	26	0	2	0.50	1	0	1	0	0
...........CGGGCGTCGGTTTGGCTCAC......................................................................................................................	20	2	3	0.33	1	0	1	0	0
..................................................................CGGGCACGCGCGTTGAGGGC...............................................................	20	3	11	0.09	1	0	0	1	0

TTGGGCAAGCGCGGGCGTCGGTTTGCCTAACGCCGGTGCTACGCCGGGACCACATATTACGAGTCTCGGTCAAGCGCATTGAGGGCGGCCTAGTGCATCTCTATAGACCCACGGTCGCCACAGAGTGCAGTCTGAGACCGCATATTACG
**************************************************..........((.............(((...(((....)))..))).))**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M046
female body

M060
embryo

V049
head

V041
embryo

............................................................................................................CCACGGTCGCCACAGAGTGCAG...................

3.00

.........................................CGCCGGGACCACATATTACGAGT.....................................................................................

3.00

..................................................................................GGGCGGCCTAGTGCATCTCTATA............................................

2.00

.....................................GCTACGCCGGGACCACATATTACGAGT.....................................................................................

2.00

......................................CTACGCCGGGACCACATATTACGAG......................................................................................

2.00

..........................................GCCGGGACCACATATTACGAGT.....................................................................................

2.00

........................................ACGCCGGGACCACATATTACGAGT.....................................................................................

2.00

...................................................................................................................CGCCACAGAGTGCAGTCTGAGAC...........

2.00

....................................TGCTACGCCGGGACCACATATTACG........................................................................................

1.00

......................................CTACGCCGGGACCACATATTACGAGT.....................................................................................

1.00

...................................................................................GGCGGCCTAGTGCATCTCTATAG...........................................

1.00

...........................................................................................................CCCACGGTCGCCACAGAGTGCAGT..................

1.00

............................................CGGGACCACATATTACGAGT.....................................................................................

1.00

..................................................................CGGTCAAGCGCATTGAGGGCGGCCT..........................................................

1.00

................................................................................................................GGTCGCCACAGAGTGCAGTCTGAGAC...........

1.00

.................................................................CCGGTCAAGCGCATTGAGGGC...............................................................

1.00

.........................................CGCCGGGACCACATATTACGA.......................................................................................

1.00

.................................................................................................................GTCGCCACAGAGTGCAGTCTGAGAC...........

1.00

...........................................................................................................CCCACGGTCGCCACAGAGTGCAG...................

1.00

...........................................CCGGGACCACATATTACGAGT.....................................................................................

1.00

.............................................................................................................CACGGTCGCCACAGAGTGCAG...................

1.00

..................................................................................................................TCGCCACAGAGTGCAGTCTGAGAC...........

1.00

.TGGGCAAGCCCGGGCGGGGGTT..............................................................................................................................

1.00

...........................................................................GCATTGAGGGCGGCCTAGTGCATCTC................................................

1.00

....................................................................................................................GCCACAGAGTGCAGTCTGAGAC...........

1.00

...................................................................................GGCGGCCTAGTGCATCTCT...............................................

1.00

......................................CTACGCCGGGACCACATATTACG........................................................................................

1.00

..........................................................................................................ACCCACGGTCGCCACAGAGTGCAG...................

1.00

.................................................................................TGGGCGGCCTAGTGCATCTC................................................

1.00

.................................................CCACATATTACGAGTCTCGGTCAAGCG.........................................................................

1.00

.....................................TATACGCCGGGACCACATATTACGAGT.....................................................................................

1.00

..GGGCAAGCGCGGGCGTCGGTTTGCCTA........................................................................................................................

1.00

........................................ACGCCGGGACCACATATTACGAG......................................................................................

1.00

.........................................................................................................GACCCACGGTCGCCACAGAGTGCAG...................

1.00

TTGGGCAAGCACGGGCGCGGGTT..............................................................................................................................

1.00

...............CGTCGGTTTGCCTAACGCCGGTGCTA............................................................................................................

0.50

...........CGGGCGTCGGTTTGGCTCAC......................................................................................................................

0.33

..................................................................CGGGCACGCGCGTTGAGGGC...............................................................

0.09

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6541:480048-480196 +	dmo_2197	AACCCGTTCGCGCCCGCAGCCAAACGGATTGCGGCCACGATGCGGCCCTGGTGTATAATGCTCAGAGCCAGTTCGCGTAACTCCCGCCGGATCACGTAGAGATATCTGGGTGCCAGCGGTGTCTCACGTCAGACTCTGGCGTATAATGC
droVir3	scaffold_12855:6849571-6849628 +		CGC---------------------------------------------------------------------------------------ATTACGT----ATGCCGGAGTGCTAGCCGCGGCCGATATGTCGCTGTTGCGCCGACTCT
droKik1	scf7180000299918:62660-62685 +		AGTGCATTCAAATACGAAGCCAAATG---------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000779914:222796-222827 +		TTC------GCGCCCGTGGGCAATCTGATTGCGGCCGC---------------------------------------------------------------------------------------------------------------

Species

Coordinate

Alignment

droMoj3

scaffold_6541:480048-480196 +

dmo_2197

AACCCGTTCGCGCCCGCAGCCAAACGGATTGCGGCCACGATGCGGCCCTGGTGTATAATGCTCAGAGCCAGTTCGCGTAACTCCCGCCGGATCACGTAGAGATATCTGGGTGCCAGCGGTGTCTCACGTCAGACTCTGGCGTATAATGC

droVir3

scaffold_12855:6849571-6849628 +

CGC---------------------------------------------------------------------------------------ATTACGT----ATGCCGGAGTGCTAGCCGCGGCCGATATGTCGCTGTTGCGCCGACTCT

droKik1

scf7180000299918:62660-62685 +

AGTGCATTCAAATACGAAGCCAAATG---------------------------------------------------------------------------------------------------------------------------

droRho1

scf7180000779914:222796-222827 +

TTC------GCGCCCGTGGGCAATCTGATTGCGGCCGC---------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

AACCCGTTCGCGCCCGCAGCCAAACGGATTGCGGCCACGATGCGGCCCTGGTGTATAATGCTCAGAGCCAGTTCGCGTAACTCCCGCCGGATCACGTAGAGATATCTGGGTGCCAGCGGTGTCTCACGTCAGACTCTGGCGTATAATGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................CACGTAGAGATATCTGGGTGCCAGC................................	25	1	14.00	14	9	0	0	0	5	0
......................................................ATAATGCTCAGAGCCAGTTCGCGTAAC....................................................................	27	1	11.00	11	1	0	0	0	10	0
......................................................ATAATGCTCAGAGCCAGTTCGCGTA......................................................................	25	1	5.00	5	2	1	0	0	0	2
...........................................................................................TCACGTAGAGATATCTGGGTGCCAGC................................	26	1	4.00	4	3	0	0	0	1	0
......................................................ATAATGCTCAGAGCCAGTTCGCGTAA.....................................................................	26	1	3.00	3	2	0	0	0	0	1
...............................................................................................GTAGAGATATCTGGGTGCCAGCGG..............................	24	1	3.00	3	3	0	0	0	0	0
......................................................ATAATGCTCAGAGCCAGTTCGCGT.......................................................................	24	1	2.00	2	0	0	0	0	2	0
...........................................................................................TCACGTAGAGATATCTGGGTGCCAG.................................	25	1	2.00	2	2	0	0	0	0	0
......TTCGCGCCCGCAGCCAAACGGATTGCG....................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
............................................................................................CACGTAGAGATATCTGGGTGCCAG.................................	24	1	1.00	1	1	0	0	0	0	0
........................................................AATGCTCAGAGCCAGTTCGCGTAACTCC.................................................................	28	1	1.00	1	0	0	0	0	0	1
...........................................................................................TCACGTAGAGATATCTGGGTGCCAGCGG..............................	28	1	1.00	1	1	0	0	0	0	0
......TTCGCGCCCGCAGCCAAACGGATTGCGGC..................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.......TCGCGCCCGCAGCCAAACGGATTGC.....................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
.....................................................TATAATGCTCAGAGCCAGTTCGCGTAAC....................................................................	28	1	1.00	1	0	0	0	0	1	0
............................................................................................CACGTAGAGATATCTGGGTGCCAGCG...............................	26	1	1.00	1	0	1	0	0	0	0
.....................................................TATAATGCTCAGAGCCAGTTCGCGTA......................................................................	26	1	1.00	1	0	0	0	0	0	1
..............................................................................................................TGCCAGCGGTGTCTCACGTCAGA................	23	1	1.00	1	1	0	0	0	0	0
...................................................TGTATAATGCTCAGAGCCAGTTCGCG........................................................................	26	1	1.00	1	1	0	0	0	0	0
..........................................................................................ATCACGTAGAGATATCTGGGTGCCAGC................................	27	1	1.00	1	0	0	0	0	0	1
................................................................................................TAGAGATATCTGGGTGCCAGCGG..............................	23	1	1.00	1	1	0	0	0	0	0
........................................................AATGCTCAGAGCCAGTTCGCGTAAC....................................................................	25	1	1.00	1	0	0	0	0	1	0
........................................................................................................................GTCTCACGTCAGACTCTGGCGT.......	22	1	1.00	1	1	0	0	0	0	0
................................................................................................TAGAGATATCTGGGTGCCAGCGGT.............................	24	1	1.00	1	1	0	0	0	0	0
............................................................................................CACGTAGAGATATCTGGGTGCC...................................	22	3	0.67	2	0	0	0	0	2	0
......................................................ATAATGCTCAGAGCCAGTTCGCG........................................................................	23	2	0.50	1	1	0	0	0	0	0
............................................................................................CACGTAGAGATATCTGGGTG.....................................	20	3	0.33	1	1	0	0	0	0	0
...........................................................................................TCACGTAGAGATATCTGGGT......................................	20	3	0.33	1	1	0	0	0	0	0
.............................................................................................ACGTAGAGATATCTGGGTGCC...................................	21	3	0.33	1	1	0	0	0	0	0
......................................................ATAATGCTCAGAGCCAGTTC...........................................................................	20	5	0.20	1	1	0	0	0	0	0
...............................................................................................................................GTCAGACTCTGGCGTATTTG..	20	17	0.06	1	1	0	0	0	0	0

droVir3

CGC---------------------------------------------------------------------------------------ATTACGT----ATGCCGGAGTGCTAGCCGCGGCCGATATGTCGCTGTTGCGCCGACTCT

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droKik1

AGTGCATTCAAATACGAAGCCAAATG---------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTC------GCGCCCGTGGGCAATCTGATTGCGGCCGC---------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

-5.0	-4.9	-4.9	-4.7

dmo_2197

scaffold_6541:480098-480146 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads