ID:

dmo_2194

 Coordinate:

scaffold_6540:34120062-34120212 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.7 -6.7 -6.6 -6.6

Flybase annnotation

exon [dmoj_GLEANR_10753:6]; CDS [Dmoj\GI10860-cds]; intron [Dmoj\GI10860-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+
mature
  1. scaffold_132:1047-1071 -
  2. scaffold_147:470-494 +
  3. scaffold_1995:1002-1026 -
  4. scaffold_2672:1162-1186 +
  5. scaffold_2728:824-848 -
  6. scaffold_2890:672-696 -
  7. scaffold_3709:1971-1995 +
  8. scaffold_4023:1955-1979 +
  9. scaffold_5784:2450-2474 +
  10. scaffold_6100:43429-43453 +
  11. scaffold_6154:4236-4260 -
  12. scaffold_6309:1865-1889 -
  13. scaffold_6309:4113-4137 -
  14. scaffold_6356:41134-41158 +
  15. scaffold_6475:72758-72782 +
  16. dmo_2194  scaffold_6540:34120119-34120143 +
star
  1. scaffold_147:517-539 +
  2. scaffold_1995:957-979 -
  3. scaffold_2672:1209-1231 +
  4. scaffold_2728:779-801 -
  5. scaffold_2890:627-649 -
  6. scaffold_3120:306-328 +
  7. scaffold_3709:2018-2040 +
  8. scaffold_4023:2002-2024 +
  9. scaffold_4063:4606-4628 +
  10. dmo_364  scaffold_4314:2400-2422 +
  11. scaffold_4986:323-345 -
  12. scaffold_5018:74-96 +
  13. scaffold_5453:706-728 -
  14. scaffold_5784:2497-2519 +
  15. scaffold_6100:43476-43498 +
  16. scaffold_6309:1820-1842 -
  17. scaffold_6356:41181-41203 +
  18. scaffold_6475:72805-72827 +
  19. scaffold_6487:86026-86048 +
  20. dmo_2194  scaffold_6540:34120166-34120188 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGTTTAATATATTGTGTTAAAAACCAAAAAGACTAAAATAAGTGTGTTCTGCCCGCTGGTACCGGAGGTGCCGCTGCTGCGGCACCCGCAACAAAGAAGTAAGAGGCCAAGTCTGAAGATAACGCCATGGGCTTCGCTCTCTTCGAATAAACCAACCTACTTCAACATTCGTATGTACTAACCGTACGAAAACAACAACAGCAACAGCAGCAACAACAACAAGAACAACAGCAACCACGAAAGCAGCAACA
***********************************************************************************************************...........((((((....((..((((.......))))....))................))).))).************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V056
head
 M060
embryo
 V049
head
.......................................................................................................................................................CAAACCTACTTGAACATGCG................................................................................ 20 3 20 1.50 30 6 17 6 0 1
.......................................................................................................................................................CAAACCTACTTGAACATGC................................................................................. 19 3 20 0.90 18 18 0 0 0 0
.................................................TGCCCGCTGGTACCGGAGGTGCCGCTG............................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0
.........................................................................................................................................................AACCTACTTGAACATGCG................................................................................ 18 2 20 0.15 3 2 0 1 0 0
...........................................................................................................CAAGTCTGAAGATAACGCCATGGGC....................................................................................................................... 25 0 16 0.13 2 0 2 0 0 0
..............................GACTAAAATAAGTGTGTTCTGCCCGC................................................................................................................................................................................................... 26 0 11 0.09 1 1 0 0 0 0
.........................................................................................................................................................................................ACGAAAACAACAACAGCAACAGC........................................... 23 0 12 0.08 1 1 0 0 0 0
.........................................................................................................................................................................................ACGAAAACAACAACAGCAACAG............................................ 22 0 13 0.08 1 1 0 0 0 0
...................................................................................................................................................................AACATGCGCATCTACTAAC..................................................................... 19 3 16 0.06 1 0 0 1 0 0
......................................................................................CGCAACAAAGAAGTAAGAGGC................................................................................................................................................ 21 0 19 0.05 1 0 0 1 0 0
...........................AAAGACTAAAATAAGTGTGTTCTGCCC..................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................................AGAGCAACAGCAGCAACAACAACAAGG........................... 27 2 20 0.05 1 1 0 0 0 0
.................................................................................................................................GGCTTCGCTCTCTTCGAATA...................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................AACAACAACAGCAACAGCAGCAAC..................................... 24 0 20 0.05 1 0 0 0 1 0
................................CTACAATAAGTGTGTTCC......................................................................................................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................AACAACAGCAACAGCAGCAACAA................................... 23 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................AACAGCAACAGCAGCAACAACAACA.............................. 25 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................CAAACCTACTTGAACATGCGT............................................................................... 21 3 20 0.05 1 0 1 0 0 0
..........................AAAAGACTAAAATAAGTGTGTTC.......................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................ACCTACTTCAACATTCGTATGTA.......................................................................... 23 0 20 0.05 1 1 0 0 0 0
................................CTACAATAAGTGTGTTCCA........................................................................................................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

ACAAATTATATAACACAATTTTTGGTTTTTCTGATTTTATTCACACAAGACGGGCGACCATGGCCTCCACGGCGACGACGCCGTGGGCGTTGTTTCTTCATTCTCCGGTTCAGACTTCTATTGCGGTACCCGAAGCGAGAGAAGCTTATTTGGTTGGATGAAGTTGTAAGCATACATGATTGGCATGCTTTTGTTGTTGTCGTTGTCGTCGTTGTTGTTGTTCTTGTTGTCGTTGGTGCTTTCGTCGTTGT
**************************************************************************...........((((((....((..((((.......))))....))................))).))).*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V056
head
 V049
head
 M060
embryo
........................................................ACCATGGCCTCCACCCCAA................................................................................................................................................................................ 19 3 20 2.55 51 50 1 0 0 0
.............................................................GGCCTCCACGGCGACCGCGCTGT....................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................ATGATTGGCATGCTTTTGTTGTT..................................................... 23 0 2 0.50 1 1 0 0 0 0
...................................................................................................................................................................................TTGGCATGCTTTTGTTGTTGTCGT................................................ 24 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................ATTGCGGTACCCGAAGCGAGAGAAGCT......................................................................................................... 27 0 20 0.35 7 7 0 0 0 0
.......................................................................................................................................................GTTTGGATGAACTTGTACG................................................................................. 19 3 20 0.35 7 0 6 1 0 0
........................................................................................................................TTGCGGTACCCGAAGCGAGAGAAGCTT........................................................................................................ 27 0 20 0.30 6 6 0 0 0 0
.......................................................................................................................ATTGCGGTACCCGAAGCGAGAGAAGCTT........................................................................................................ 28 0 20 0.30 6 6 0 0 0 0
...................................................................................TGGGCGTTGTTTCTTCATTCTCCGGTT............................................................................................................................................. 27 0 19 0.21 4 4 0 0 0 0
...................................................................................TGGGCGTTGTTTCTTCATTCTCCGGT.............................................................................................................................................. 26 0 19 0.16 3 3 0 0 0 0
.......................................................................................................................................................GTTTGGATGAACTTGTACGC................................................................................ 20 3 20 0.15 3 1 0 0 2 0
..........................................................................................................................GCGGTACCCGAAGCGAGAGAAGCTTATT..................................................................................................... 28 0 20 0.15 3 3 0 0 0 0
..........................................................................................................................GCGGTACCCGAAGCGAGAGAAGCTTATTT.................................................................................................... 29 0 20 0.15 3 3 0 0 0 0
...........................................................................CGACGCCGTGGGCGTTGTTTCTTCATTCT................................................................................................................................................... 29 0 20 0.15 3 3 0 0 0 0
..........................................................................................................................GCGGTACCCGAAGCGAGAGAAGCT......................................................................................................... 24 0 20 0.15 3 2 1 0 0 0
.........ATAACACAATTTTTGGTTTTTCTGATTT...................................................................................................................................................................................................................... 28 0 20 0.15 3 3 0 0 0 0
..........................................................................................................................GCGGTACCCGAAGCGAGAGAAGCTTAT...................................................................................................... 27 0 20 0.15 3 3 0 0 0 0
.....................................................GCGCCCATGGCCGGCACGGC.................................................................................................................................................................................. 20 3 7 0.14 1 1 0 0 0 0
.................................................ACGGACGACCTTGGCCTC........................................................................................................................................................................................ 18 2 9 0.11 1 0 0 1 0 0
....................................................................................GGGCGTTGTTTCTTCATTCTCCGGT.............................................................................................................................................. 25 0 19 0.11 2 2 0 0 0 0
...............................................................................................................................ACCCGAAGCGAGAGAAGCTTATTTGGTT................................................................................................ 28 0 19 0.11 2 2 0 0 0 0
....................................................................................GGGCGTTGTTTCTTCATTCTCCGGTT............................................................................................................................................. 26 0 19 0.11 2 2 0 0 0 0
.........................................................................................................................TGCGGTACCCGAAGCGAGAGAAGCTTAT...................................................................................................... 28 0 20 0.10 2 2 0 0 0 0
..............................................................................CGCCGTGGGCGTTGTTTCTTCATTCT................................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0
...........................................................................................................................CGGTACCCGAAGCGAGAGAAGCTTATTT.................................................................................................... 28 0 20 0.10 2 2 0 0 0 0
.........................................................................................................................................................TTGGATGAACTTGTACGC................................................................................ 18 2 20 0.10 2 2 0 0 0 0
...........................................................................................................................................................................................................................GTTCTTGTTGTCGTTGGTGCTTTCGT...... 26 0 20 0.10 2 2 0 0 0 0
..........................................................................ACGACGCCGTGGGCGTTGTTTCTTCAT...................................................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0
...............................................................................................................................ACCCGAAGCGAGAGAAGCTTATTTGGT................................................................................................. 27 0 20 0.10 2 2 0 0 0 0
.............................................................................................................................GTACCCGAAGCGAGAGAAGCTTATTT.................................................................................................... 26 0 20 0.10 2 1 1 0 0 0
...........................................................................................................................CGGTACCCGAAGCGAGAGAAGCTT........................................................................................................ 24 0 20 0.10 2 2 0 0 0 0
................................................................................................................................................................................TGATGGGCATACTTCTGTT........................................................ 19 3 15 0.07 1 0 1 0 0 0
.........................................................................................CTGTTTCTTCATTCTCCGGTTCAGACTTC..................................................................................................................................... 29 1 15 0.07 1 1 0 0 0 0
.................................................................................CCTGGGCGTTGTTTCTTCATTCTCCGGTT............................................................................................................................................. 29 1 19 0.05 1 1 0 0 0 0
..................................................................................................................................CGAAGCGAGAGAAGCTTATTTGGTT................................................................................................ 25 0 19 0.05 1 1 0 0 0 0
..................................................................................GTGGGCGTTGTTTCTTCATTCTCCGGTT............................................................................................................................................. 28 0 19 0.05 1 1 0 0 0 0
........................................................................................................................TTGCGGTACCCGAAGCGAGAGAAGCTTAT...................................................................................................... 29 0 19 0.05 1 0 1 0 0 0
ACAAATTATATAACACAATTTTTGGTTTT.............................................................................................................................................................................................................................. 29 0 20 0.05 1 1 0 0 0 0
...............CAATTTTGGGTTTTTCTGATT....................................................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................................................GTTGGTGCTTTCGTCGTTGT 20 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................................................TTGTCGTTGGTGCTTTCGT...... 19 0 20 0.05 1 1 0 0 0 0
............................................................................................................................................GAAGCTTATTTGGTTGGATGAAGT....................................................................................... 24 0 20 0.05 1 0 1 0 0 0
.......................................................................................................................ATTGCGGTACCCGAAGCGAGAGAAGC.......................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................................................................GTTGTCGTTGGTGCTTTCGT...... 20 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................AGAGAAGCTTATTTGGTTGGATGAAGTT...................................................................................... 28 0 20 0.05 1 0 1 0 0 0
.........................................................................................................................TTCGGTACCCGAAGCGAGAGAAGCT......................................................................................................... 25 1 20 0.05 1 0 1 0 0 0
...............................................................................................................................ACCCGAAGCGAGAGAAGCTTATT..................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
.........ATAACACAATTTTTGGTTTTTCTGAT........................................................................................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0
............................................................................GACGCCGTGGGCGTTGTTTCTTCATT..................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................CTTGGTTGGATGAAGTTGTAAGCATA............................................................................. 26 1 20 0.05 1 0 1 0 0 0
........................................................................CGACGACGCCGTGGGCGTTGTTTCTT......................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................TACCCGAAGCGAGAGAAGCTTATTT.................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
......................TGGTTTTTCTGATTTTATTCACACA............................................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................................CTTGTTGTCGTTGGTGCTTTC........ 21 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................TGCGGTACCCGAAGCGAGAGAAGCT......................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................................................................................CTTGTTGTCGTTGGTGCTTTCGT...... 23 0 20 0.05 1 0 1 0 0 0
...........................................................................................................................CGGTACCCGAAGCGAGAGAAGCTTATT..................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................................TGTTGTTGTTCTTGTTGTCGTTGGT.............. 25 0 20 0.05 1 1 0 0 0 0
...........................................................................CGACGCCGTGGGCGTTGTTTCTTCATT..................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................................................TGTTCTTGTTGTCGTTGGTGCTT.......... 23 0 20 0.05 1 1 0 0 0 0
...................................................................CACGGCGACGACGCCGTGGGCGTTGT.............................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................TTTGGTTGGATGAAGTTGTAAGCAT.............................................................................. 25 0 20 0.05 1 0 1 0 0 0
.........................................................................................................................TGCGGTACCCGAAGCGAGAGAAGCTTATTT.................................................................................................... 30 0 20 0.05 1 0 1 0 0 0
...........................................................................CGACGCCGTGGGCGTTGTTTCTTCAT...................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................................................GTTGTTCTTGTTGTCGTTGGTGCTT.......... 25 0 20 0.05 1 1 0 0 0 0
................................................................................................................................CCCGAAGCGAGAGAAGCTTATTTGGT................................................................................................. 26 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................TGCGGTACCCGAAGCGAGAGAAGCTT........................................................................................................ 26 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................................GTTGTCGTCGTTGTTGTTGTTCTT.......................... 24 0 20 0.05 1 0 1 0 0 0
............................................................................................................................................................................................................................TTCTTGTTGTCGTTGGTGCTTTCG....... 24 0 20 0.05 1 0 0 0 0 1
.............................................................................................................................................................................................................................TCTTGTTGTCGTTGGTGCTTTCGT...... 24 0 20 0.05 1 1 0 0 0 0
.............................................................................ACGCCGTGGGCGTTGTTTCTTCATTCT................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
.......................GGTTTTTCTGATTTTATTCACACAAGA......................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................................TGTTGTTGTTCTTGTTGTCGTT................. 22 0 20 0.05 1 1 0 0 0 0
........................................................................................................................TTGCGGTACCCGAAGCGAGAGAAGCT......................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................ACCCGAAACGAGAGAAGCTTATTTGGT................................................................................................. 27 1 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................CGTCGTTGTTGTTGTTCTTGT........................ 21 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:34120012-34120262 + dmo_2194 TGTTTAATATATTGTGTTAAAAACCAAAAA-----G-----ACTAAAATAAGTGTGTTCTGCCCGCTGGTACC-----GGAGGTG----CCGCT--GCTGCGGCAC----------------CCGCAA----------------CAAA--GA-------------------------------------------------------------AGTAAGAGGCCAA---------------G-TCTGAAGATAACGCCATGGGCTTCGCT------------------------------------------------------------------------------------C-------------------------------------------------TCTT--------------CGAATAAACCAA-------------CCTACTTCAACATTCGTA---TGTACTAAC------------------------------------CGTACGA---AAACAA------CAA---------C--------------------------------------AG---CAACAGCA---------GCAACAACAACAAGAACAACAG------CAACCACG------A------------------AAGCAG---------CAA-CA
droVir3 scaffold_12928:6658109-6658333 + ACCAAA----------------------AA-----GAAGAAACCAAAGAAA-------CAGCGCGCCGTCACC-----ATGGATG-ATGCGGCC--GTTGCGGCAGCGG-------CAACAACTGGCG---------------------------------------------------------------------------G------------------------CAAT-------------TTGCAGCGCATGCAACAGAT--------------------------AACCA---------------------------AATCAGCATCGTCCAACATGATGTCACAGCG--------------------------------------------TTT-----------------------------------------------GCGC---A-------------------GCA--ACATGGA------------------------------TTACTACAACAA------T--------------------------------------------------AG---CA---------------GCAGCAGCAGCAACAACAACAGCAACAACAACAACT------A---------------CTA-TGCAG---------CAC-AT
droGri2 scaffold_15110:19327724-19327918 - TGCTC------------------------------------------------------CTCCAGCTGGCACC-----GC------------------TTTGCCGC---CCGCCA-CGCCCATTACAG----------------T-----GA-------------------------------------------------------------CGCCAACGCCCGC--GCAGCA--------------TGATGCCAGCAATGGCTATACG----------------------------------------------------------------------------------------------------------------------------------------CC--------------GAGCTATAACAA----------------------------TCTAACGTCACCAGCATT------G------------------------AGCGCACAA---CAACAG------CAG---------C--------------------------------------AG---CAGCAGCA---------ACAACAACAGCAGCAGCAACAG------CAACAGCA------G------------------CAGCAA---------CAA-CA
droWil2 scf2_1100000004516:2951318-2951591 + TGATAAGCTTATGTTTTTAAAAACAA---------------AGTAAAAAAAAGGTCTTCT-----TTG---------------TAATTGTTGTT--GTTGCTGATG----------------CTGCTGT-GTCCAGTTGTGACACAAA--GTGGGATAGAGAGCAAATGAGAGGGAGAGAAAAAA---------------------------------------------------------------------CAGCACAAGGTTTGCT----------------------------AAGGCGGCAA--C-------------------------------------------------GCAACGGCG------------------------------------CTT--------------GGGTTATAGCAA-------------TTTAC---A-------------------ATA--ACAGCAA-----------CTAC----------------------ACCAT----------------------------------------ACTATGCATATAATAAAAG---CAACAACA---------ACAACAACAACAACAACAACAA------CAACAACA------A------------------CAACAA---------CAA-CA
dp5 3:13831454-13831705 + GTGTAA-----CACG---------CCG----------AGAAACCAAAATAAATG------------------------TGTGGCAGTGGCAACA--GCGGTGACTG----------------CTGCTAGT---------------T--AT-----------------------------------------------------A--------------G---------CTTCTAGTTCCAAG-TGCAGCGACGACAACAGCAGCAACATCTGTAGAGACAACAAAAGAAGCCACC--------------A------------------------------CTAGTGTTAGAATA--------------------------------------------AAT-----------------------------------------------GGCC---T-------------------GCA--ACATGGCTTTGAATCCGGTATT---------A--ACAAAA---GAAGAG------GAA---------C--------------------------------------AC---CAGCAACA---------GCAACAGCAACAGCAACATCTG------CAACACCA------G------------------GAGTTT---------CAA-CA
droPer2 scaffold_13:1559169-1559361 - GTGC-------------------------------------------------------TGCCCACAGTGATC-----AT----------CGAT--GATGCTGGTG----------CTTCAATTACAG----------------CCAA--CC-------------------------------------------------------------CGAAGGCCGCCAC-------------------------GGATAAGGCCAATGCCACC------------------------------------------------------------------------------------T-------------------------------------------------------------------CG-ACACCCAAA-------------ACGACGTCGACTCCTGGA---GGCGCCACCGCT------G--------C---------------------CAC---CGCCAA------TAG---------C--------------------------------------AG---CAGCAGCA---------GCAGCAACACCAACAGCCACAA------CATCAGCA------G------------------CAGCAG---------CAA-CA
droAna3 scaffold_13340:4279281-4279469 - TGG------------------------------------------------------------CAGCGGCAGT-----GTCGCTGGCTGTGGCA--GTCACAACAT----------------TGT----------------------------------------------------------------------------------------CGCCGGCAGTCAT-----------------------------------------------------------------GACCAGCTCG----------------------------------------------------------------------------------------------------------CCAATGTCGCTGTCATGCATCCAACAT--------ACGGC--AGTTGCCAC------------------------AACAA---------------------------------------CAATAGCAACAG---------C--------------------------------------AA---CAGCAACA---------GCAATAACAACAACAACAGCAG------TAGCAGCA------G------------CAG---CCACAACAGCAATTGCAATCA
droBip1 scf7180000396543:349283-349493 + GCAGGA----------------------GC------------------------------------------A-----GGAGGAG----CAGGA--GC----------------------------------------------------------------------------------AGGAGCGGCACAAGGTGCAACAA----------CGG----------------------------------GCGGCAGCAATAGCCACAGTTTAGAAGAGAGCAAAAGACTTGACC-----------------------------------------------------------A-------------------------------------------------TCAACAACAACAACAATATACAT----CAATATTACACACGGCCTTAATGTCGC---------------AACG---------------------------------------------------------------------------TTCTATG-------------------------CCACCTGCA---ACATCA------CCAGTTGCAACAACAACAACAG------CAACAACA------A------------------CAGCAA---------TA---A
droKik1 scf7180000302724:439655-439841 + GCC------------------------------------------------------------AGGTGCAAAC-----GCAGGTGGCGGCAGCT-----GCAGCAG----------------CAGCCG---------------------------------------------------------------------------C------------------------ACAGTTGCAGCAGG-TTC------AACAGCAGCAGCATCATC------------------------------------------------------------------------------------A-------------------------------------------------------------------TGTACAAACCAC-------------ACAGATTCAGCACATTCA---AGTGCAATC------------------------------------TGCACCG---CCACCG------CAG---------C--------------------------------------AA---CAACAGCA---------GCAACAACAGCAGCAGCAGCAG------CAACAACA------G------------------CAGCAG---------CAG-CA
droFic1 scf7180000451454:2333-2549 - AAAAA------------------CTAAAACAAAAAAAACAAAC----------------CATCTGCGAGAATC-----AT----------C--------GTGCCGC---TGATGATCGGCACTATCGG----------------CAAA--TAAG--AAAAAAGCT-ATAAGAGTGACATAGAAAA------------CATCAG----------CAGCAGCAAC---AATCATCAGCAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------CTTC---A-------------------GCA--GCATCAG-----------CAGCAGCGGCAACAA-------------CA----------------------------------------------------------------ATCAGCA---------GCGGCAGCAACAACAACAACAA------CGGCAACA------A------------------CAACAG---------CAG-CG
droEle1 scf7180000490751:1099620-1099786 - CCG----------------------------------------------------------------------------TCGGTG-TCGCAGCA--ACAGCAGCAG----------------CAGCAGC-------------------AG-----------------------------------------------------C----------------------A-ACAGCAGCAACAGG-CGCAACAG------------TT-----------------------------------------------------------------------------------------------GCCGCCGGG------------------------------------CGT--------------GGGAATTGCCAG-------------TCCGC---T-------------------GCA--ACAGCAG-----------CAGC----------------------AGCAA------CAG---------C--------------------------------------AG---CAGCAACA---------GCAGCAACAGCAACAGCAACAG------CAGCAACA------G------------------CAGCAG---------CAA-CA
droRho1 scf7180000780062:215807-215990 + TCC------------------------------------------------------------ACCAACCACT-----ACCTC-TTGCGCGACC--ACCACAACAA----------------CCACAA-----------------------------------------------------------------------------------------------------CAACAACTAAAAA-GCCAACAACAACCACAACAACGACAAC---------------------A--------------------------------------------------------------A-------------------------------------------------------------------CTTGTAAACCAA-------------CAACAACCACAACA-------------------------A--------------C------GACAA--CAA-----------------C----------------TTGTAAA-------------------------CCAA---CAACAGCC---------TCAACAACAACAACAACCACAA------CAACAACA------A------------------CCACAA---------CAA-CT
droBia1 scf7180000301703:104024-104194 - GGAGA----------------------------------------------------------------------------------TGCAGCA--GCTGCGCCGC---------------------------------------------------------------------------------------------------------------------------CAACAGCAGCAGG-GGCAGCAGT------------C-----------------------------------------------------------------------------------------------GCAT-----------------------------------------------------------------------------------TTCGG---G-------------------GCA--TCAGG-G------------------------GACGAGGAT---CACGAG------CAGAAACAACAGCAAC-AGGCACATAACCAA---CCACTACAAC-------CA---ACACAGCA---------CCACCAACTACAACCACAACAA------CAGCAACA------A------------------CAGCAA---------CAA-CA
droTak1 scf7180000415769:659481-659657 - ATC---------------------------------------------------------------------------GCAGGTGGTGGCAGCT--GCCGCAGCGG----------------CCG------------------------------------------------------------------------------C------------------------CCAGCAGTTGCAAG-TTCAGCAGCAACAGCAACAGCATCACC------------------------------------------------------------------------------------A-------------------------------------------------------------------TGTACAAACCAC-------------CCAGATTCAGCACATTCA---AGTGCAATC------------------------------------TGCACCG---CCCCCG--------------------------------------------------------------CAACAACA---------GCAGCAGCAGCAACAACAGCAG------CAGCAACA------G------------------CAGCAG---------CAG-CA
droEug1 scf7180000409474:2542837-2543086 + TTTG-------------------------------------------------------------TCATATTT-----GCAGTTAGCAACAACAACATTACAACAA----------------GTACAGC----------------T--AG-----------------------------------------------------T------------------------ACAGTTAGTGGAAACTACAACAACAACAACAACAACAAGCACC-----------------------------------------------------------------------------------TCAGTCACCA---AGCCCAAAACCAACCAACAAACTTTAAAAATAAAATCCACC--------------AAAAAAAACCAA-------------TCCA---------------------------------------------------ATCAACAAGAACAA-------------------------------------------------ACAACAACTACAAA-------AA---TAACAGCCACCTCCATTACAAGTACAACAACAACAACAA------CAACAACA------A------------------GAATAA---------CTA-GA
dm3 chr3R:27478328-27478539 + AATTG--------------------------------------------------------TGTGCTGAGGTCATGTCGCTGGCGT---CGCCA--GTTGCAGCAG----------------CGGCAAC-------------------AA-----------------------------------------------------CAATGCAACAATGGGGCAGCAAC-------------------TGACGA---CT--ATAATGTCTGGC----------------------------CGGGCTCCACTCCTCTCACTCGCCTGGGCGGCATCAACTCAAATGGT--------------------------------------------------------------------------------------CTC-------------GCAGTTGTAAAGCTGC--------------------------------------------------------------------------------------------------------------------------------CAAGAGCA----------GACCGGCATGCGCAGCTGCAG------CAAACGCA------A------------------CAGCAG---------CAG-CA
droSim2 x:5444825-5445017 + GCC------------------------------------------------------------AGGTGCCATC-----GCAGGTGGTCGCAGCA--GCCGCAGCAG----------------CTGCAGC-------------------GG-----------------------------------------------------C------------------------ACAGCAGCTGCAGG-TCCAGCATCAACAGCAGCAGCATCACC------------------------------------------------------------------------------------A-------------------------------------------------------------------TGTACAAACCAC-------------CCAGATTCAGCACATCCA---AGTGCAATC------------------------------------GGCACCG---CCCCCG--------------------------------------------------------------CAACAGCA---------GCAACAGCAACAGCAGCAGCAG------CAACAACA------G------------------CAGCAG---------CAG-CA
droSec2 scaffold_4:955813-956005 - GCC------------------------------------------------------------AGGTGCCATC-----GCAGGTGGTCGCAGCA--GCCGCAGCAG----------------CTGCAGC-------------------GG-----------------------------------------------------C------------------------ACAGCAGCTGCAGG-TCCAGCATCAACAGCAGCAGCATCACC------------------------------------------------------------------------------------A-------------------------------------------------------------------TGTACAAACCAC-------------CCAGATTCAGCACATCCA---AGTGCAATC------------------------------------GGCACCG---CCCCCG--------------------------------------------------------------CAACAGCA---------GCAACAGCAACAGCAGCAGCAG------CAACAACA------A------------------CAGCAG---------CAG-CA
droYak3 X:14662695-14662887 + GCC------------------------------------------------------------AGGTGCAATC-----GCAGGTGGTCGCAGCA--GCCGCAGCAG----------------CGG------------------------------------------------------------------------------C------------------------ACAGCAGCTGCAGG-TCCAGCAGCAACAGCAGCAGCATCACC------------------------------------------------------------------------------------A-------------------------------------------------------------------TGTACAAACCAC-------------CCAGATCCAGCACATTCA---AGTGCAATC------------------------------------GGCGCCG---CCCCCA------C--------------------------------------------------------AGCAGCA---------GCAGCAGCAACAACAACAGCAG------CAGCAACA------G------------CAATCACAGCAG---------CAA-CA
droEre2 scaffold_4929:5405373-5405543 - CTGCC----------------------------------------------------------CGCCGCCCGT--------GGTG-ATGCGGAA--TCTGCAGCAG----------------CAGCAAC-------------------AA-----------------------------------------------------C----------------------A-ACATCAGCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAT-------------GCTCAGTC----------------------------------------C-----CAGCGGCAATGG----------------------------------CAATCTTTTGTATACTCAG-------------------------CA---ACAGCA------GCAGGGTCAGC------AGCAG------CAACCACAACAACAGCAGCAAGGACCACCAATTCGCTTT---------CAA-CA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TGTTTAATATATTGTGTTAAAAACCAAAAA-----G-----ACTAAAATAAGTGTGTTCTGCCCGCTGGTACC-----GGAGGTG----CCGCT--GCTGCGGCAC----------------CCGCAA----------------CAAA--GA-------------------------------------------------------------AGTAAGAGGCCAA---------------G-TCTGAAGATAACGCCATGGGCTTCGCT------------------------------------------------------------------------------------C-------------------------------------------------TCTT--------------CGAATAAACCAA-------------CCTACTTCAACATTCGTA---TGTACTAAC------------------------------------CGTACGA---AAACAA------CAA---------C--------------------------------------AG---CAACAGCA---------GCAACAACAACAAGAACAACAG------CAACCACG------A------------------AAGCAG---------CAA-CASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................TGCCCGCTGGTACC-----GGAGGTG----CCGCT--G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.501100000
...............................................................................................................................................................................................................................CAA---------------G-TCTGAAGATAACGCCATGGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................25160.132000002
...................................G-----ACTAAAATAAGTGTGTTCTGCCCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26110.091100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGA---AAACAA------CAA---------C--------------------------------------AG---CAACAGC............................................................................................23120.081100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGA---AAACAA------CAA---------C--------------------------------------AG---CAACAG.............................................................................................22130.081100000
...........................................................................................................................CGCAA----------------CAAA--GA-------------------------------------------------------------AGTAAGAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.051000100
...........................AAA-----G-----ACTAAAATAAGTGTGTTCTGCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
.....................................................................................................................................................................................................................................................................GGCTTCGCT------------------------------------------------------------------------------------C-------------------------------------------------TCTT--------------CGAATA......................................................................................................................................................................................................................................................................20200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA------CAA---------C--------------------------------------AG---CAACAGCA---------GCAAC.............................................................................24200.051000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CAA---------C--------------------------------------AG---CAACAGCA---------GCAACAA...........................................................................23200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------C--------------------------------------AG---CAACAGCA---------GCAACAACAACA......................................................................25200.051100000
..........................AAAA-----G-----ACTAAAATAAGTGTGTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------CCTACTTCAACATTCGTA---TGTA..........................................................................................................................................................................................................................23200.051100000
droVir3
ACCAAA----------------------AA-----GAAGAAACCAAAGAAA-------CAGCGCGCCGTCACC-----ATGGATG-ATGCGGCC--GTTGCGGCAGCGG-------CAACAACTGGCG---------------------------------------------------------------------------G------------------------CAAT-------------TTGCAGCGCATGCAACAGAT--------------------------AACCA---------------------------AATCAGCATCGTCCAACATGATGTCACAGCG--------------------------------------------TTT-----------------------------------------------GCGC---A-------------------GCA--ACATGGA------------------------------TTACTACAACAA------T--------------------------------------------------AG---CA---------------GCAGCAGCAGCAACAACAACAGCAACAACAACAACT------A---------------CTA-TGCAG---------CAC-ATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................GTCCAACATGATGTCACAGCG--------------------------------------------TTT-----------------------------------------------GC................................................................................................................................................................................................................................................2612.002001000000000010000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AGAT--------------------------AACCA---------------------------AATCAGCATC.....................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000011000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CAGAT--------------------------AACCA---------------------------AATCAGCATC.....................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................ATGATGTCACAGCG--------------------------------------------TTT-----------------------------------------------GC................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
.....................................................................CACC-----ATGGATG-ATGCGGCC--GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................GTCCAACATGATGTCACAGCG--------------------------------------------TT..................................................................................................................................................................................................................................................................................................2311.001000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................AT-------------TTGCAGCGCATGCAACAGAT--------------------------A..............................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................GCAACAGAT--------------------------AACCA---------------------------AATCAGCATCGT...................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................G---------------------------------------------------------------------------G------------------------CAAT-------------TTGCAGCGCATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................AACAGAT--------------------------AACCA---------------------------AATCAGCATCGTC..................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................A---------------------------AATCAGCATCGTCCAACATGAT.........................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................AACAGAT--------------------------AACCA---------------------------AATCAGCATC.....................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................CGTCCAACATGATGTCACAGCG--------------------------------------------TT..................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................ATGATGTCACAGCG--------------------------------------------TTT-----------------------------------------------GCGC---...........................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
...............................................................................TGGATG-ATGCGGCC--GTTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................ACAGAT--------------------------AACCA---------------------------AATCAGCATCGTCC.................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAACAACAACAACT------A---------------CTA-T...................2811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................CACC-----ATGGATG-ATGCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000010000000000000000000000000000
...................................................................GTCACC-----ATGGATG-ATGCGGCC--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................AACATGATGTCACAGCG--------------------------------------------TTT-----------------------------------------------GCGC---...........................................................................................................................................................................................................................................2411.001000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AT--------------------------AACCA---------------------------AATCAGCATCGTCCAACATGAT.........................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GAT--------------------------AACCA---------------------------AATCAGCATCGTCCAACA.............................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000001000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................AACATGATGTCACAGCG--------------------------------------------TTT-----------------------------------------------GC................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ACATGGA------------------------------TTACTACAACAA------T--------------------------------------------------AG---CA---------------GC................................................................................2711.001000000000000000000000000000000001000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAACAACAACAAC...............................................21200.153003000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAACAACAGCA..........................................................24200.102002000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA------T--------------------------------------------------AG---CA---------------GCAGCAGCAGCA......................................................................21180.061000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA------T--------------------------------------------------AG---CA---------------GCAGCAGCA.........................................................................19200.051000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAACAACAGCA..........................................................23200.051000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAACAGCAACA.......................................................21200.051000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAACAGCA..........................................................22200.051000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------GCAGCAGCAGCAACAAC.................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAACAACAGCAACC.......................................................23200.051100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAACAACAACA.................................................23200.051000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CA---------------GCAGCAGCAGCAACAAC.................................................................20200.051000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAACAGCAACAACAACA.................................................28200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAA------T--------------------------------------------------AG---CA---------------GCAGCAG...........................................................................19200.051000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAACAGCAACA.......................................................25200.051000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAACAGCAACAAC.....................................................27200.051000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------T--------------------------------------------------AG---CA---------------GCAGCAGCAGCAAC....................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAGCAACAACAACA.................................................24200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------T--------------------------------------------------AG---CA---------------GCAGCAGCAGCA......................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
droGri2
TGCTC------------------------------------------------------CTCCAGCTGGCACC-----GC------------------TTTGCCGC---CCGCCA-CGCCCATTACAG----------------T-----GA-------------------------------------------------------------CGCCAACGCCCGC--GCAGCA--------------TGATGCCAGCAATGGCTATACG----------------------------------------------------------------------------------------------------------------------------------------CC--------------GAGCTATAACAA----------------------------TCTAACGTCACCAGCATT------G------------------------AGCGCACAA---CAACAG------CAG---------C--------------------------------------AG---CAGCAGCA---------ACAACAACAGCAGCAGCAACAG------CAACAGCA------G------------------CAGCAA---------CAA-CASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCATT------G------------------------AGCGCACA...........................................................................................................................................................................1911.00110
.........................................................................................................................................................................................................................AACGCCCGC--GCAGCA--------------TGATGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAGCAGCAACAG------CA....................................................24200.05110
droWil2
TGATAAGCTTATGTTTTTAAAAACAA---------------AGTAAAAAAAAGGTCTTCT-----TTG---------------TAATTGTTGTT--GTTGCTGATG----------------CTGCTGT-GTCCAGTTGTGACACAAA--GTGGGATAGAGAGCAAATGAGAGGGAGAGAAAAAA---------------------------------------------------------------------CAGCACAAGGTTTGCT----------------------------AAGGCGGCAA--C-------------------------------------------------GCAACGGCG------------------------------------CTT--------------GGGTTATAGCAA-------------TTTAC---A-------------------ATA--ACAGCAA-----------CTAC----------------------ACCAT----------------------------------------ACTATGCATATAATAAAAG---CAACAACA---------ACAACAACAACAACAACAACAA------CAACAACA------A------------------CAACAA---------CAA-CASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................GTTGTT--GTTGCTGATG----------------CTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21140.07100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA------CAACAACA------A------------------CAACAA---------......20200.05101000
.......................................................................................TGTTGTT--GTTGCTGATG----------------CTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
dp5
GTGTAA-----CACG---------CCG----------AGAAACCAAAATAAATG------------------------TGTGGCAGTGGCAACA--GCGGTGACTG----------------CTGCTAGT---------------T--AT-----------------------------------------------------A--------------G---------CTTCTAGTTCCAAG-TGCAGCGACGACAACAGCAGCAACATCTGTAGAGACAACAAAAGAAGCCACC--------------A------------------------------CTAGTGTTAGAATA--------------------------------------------AAT-----------------------------------------------GGCC---T-------------------GCA--ACATGGCTTTGAATCCGGTATT---------A--ACAAAA---GAAGAG------GAA---------C--------------------------------------AC---CAGCAACA---------GCAACAGCAACAGCAACATCTG------CAACACCA------G------------------GAGTTT---------CAA-CASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................GTGGCAACA--GCGGTGACTG----------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------------------------------AC---CAGCAACA---------GCAACAGCAACAGC....................................................................2590.1110100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---------GCAACAGCAACAGCAA..................................................................20200.0510100000000
droPer2
GTGC-------------------------------------------------------TGCCCACAGTGATC-----AT----------CGAT--GATGCTGGTG----------CTTCAATTACAG----------------CCAA--CC-------------------------------------------------------------CGAAGGCCGCCAC-------------------------GGATAAGGCCAATGCCACC------------------------------------------------------------------------------------T-------------------------------------------------------------------CG-ACACCCAAA-------------ACGACGTCGACTCCTGGA---GGCGCCACCGCT------G--------C---------------------CAC---CGCCAA------TAG---------C--------------------------------------AG---CAGCAGCA---------GCAGCAACACCAACAGCCACAA------CATCAGCA------G------------------CAGCAG---------CAA-CASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTCGACTCCTGGA---GGCGCCACC.....................................................................................................................................................................................................................2511.001010000
................................................................................................................................................................................................................................................................AGGCCAATGCCACC------------------------------------------------------------------------------------T-------------------------------------------------------------------CG-ACA......................................................................................................................................................................................................................................................................2011.001010000
....................................................................TGATC-----AT----------CGAT--GATGCTGGTG----------CT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
droAna3
TGG------------------------------------------------------------CAGCGGCAGT-----GTCGCTGGCTGTGGCA--GTCACAACAT----------------TGT----------------------------------------------------------------------------------------CGCCGGCAGTCAT-----------------------------------------------------------------GACCAGCTCG----------------------------------------------------------------------------------------------------------CCAATGTCGCTGTCATGCATCCAACAT--------ACGGC--AGTTGCCAC------------------------AACAA---------------------------------------CAATAGCAACAG---------C--------------------------------------AA---CAGCAACA---------GCAATAACAACAACAACAGCAG------TAGCAGCA------G------------CAG---CCACAACAGCAATTGCAATCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................CAACAT----------------TGT----------------------------------------------------------------------------------------CGCCGGCAGTCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........................................................................................................................................................................................................................................................................................................GCTCG----------------------------------------------------------------------------------------------------------CCAATGTCGCTGTCA............................................................................................................................................................................................................................................................................2011.001100000
..........................................................................................................................TGT----------------------------------------------------------------------------------------CGCCGGCAGTCAT-----------------------------------------------------------------GACCAGC........................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...........................................................................................................................GT----------------------------------------------------------------------------------------CGCCGGCAGTCAT-----------------------------------------------------------------GACCAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...........................................................................................................................GT----------------------------------------------------------------------------------------CGCCGGCAGTCAT-----------------------------------------------------------------GACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAG------TAGCAGCA------G------------CAG---.....................2160.171100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG------TAGCAGCA------G------------CAG---CC...................1980.131100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCAACAG---------C--------------------------------------AA---CAGCAAC............................................................................................21110.091010000
droBip1
GCAGGA----------------------GC------------------------------------------A-----GGAGGAG----CAGGA--GC----------------------------------------------------------------------------------AGGAGCGGCACAAGGTGCAACAA----------CGG----------------------------------GCGGCAGCAATAGCCACAGTTTAGAAGAGAGCAAAAGACTTGACC-----------------------------------------------------------A-------------------------------------------------TCAACAACAACAACAATATACAT----CAATATTACACACGGCCTTAATGTCGC---------------AACG---------------------------------------------------------------------------TTCTATG-------------------------CCACCTGCA---ACATCA------CCAGTTGCAACAACAACAACAG------CAACAACA------A------------------CAGCAA---------TA---ASizeHit CountTotal NormTotal
No Reads
droKik1
GCC------------------------------------------------------------AGGTGCAAAC-----GCAGGTGGCGGCAGCT-----GCAGCAG----------------CAGCCG---------------------------------------------------------------------------C------------------------ACAGTTGCAGCAGG-TTC------AACAGCAGCAGCATCATC------------------------------------------------------------------------------------A-------------------------------------------------------------------TGTACAAACCAC-------------ACAGATTCAGCACATTCA---AGTGCAATC------------------------------------TGCACCG---CCACCG------CAG---------C--------------------------------------AA---CAACAGCA---------GCAACAACAGCAGCAGCAGCAG------CAACAACA------G------------------CAGCAG---------CAG-CASizeHit CountTotal NormTotal
No Reads
droFic1
AAAAA------------------CTAAAACAAAAAAAACAAAC----------------CATCTGCGAGAATC-----AT----------C--------GTGCCGC---TGATGATCGGCACTATCGG----------------CAAA--TAAG--AAAAAAGCT-ATAAGAGTGACATAGAAAA------------CATCAG----------CAGCAGCAAC---AATCATCAGCAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------CTTC---A-------------------GCA--GCATCAG-----------CAGCAGCGGCAACAA-------------CA----------------------------------------------------------------ATCAGCA---------GCGGCAGCAACAACAACAACAA------CGGCAACA------A------------------CAACAG---------CAG-CGSizeHit CountTotal NormTotal
No Reads
droEle1
CCG----------------------------------------------------------------------------TCGGTG-TCGCAGCA--ACAGCAGCAG----------------CAGCAGC-------------------AG-----------------------------------------------------C----------------------A-ACAGCAGCAACAGG-CGCAACAG------------TT-----------------------------------------------------------------------------------------------GCCGCCGGG------------------------------------CGT--------------GGGAATTGCCAG-------------TCCGC---T-------------------GCA--ACAGCAG-----------CAGC----------------------AGCAA------CAG---------C--------------------------------------AG---CAGCAACA---------GCAGCAACAGCAACAGCAACAG------CAGCAACA------G------------------CAGCAG---------CAA-CASizeHit CountTotal NormTotal
No Reads
droRho1
TCC------------------------------------------------------------ACCAACCACT-----ACCTC-TTGCGCGACC--ACCACAACAA----------------CCACAA-----------------------------------------------------------------------------------------------------CAACAACTAAAAA-GCCAACAACAACCACAACAACGACAAC---------------------A--------------------------------------------------------------A-------------------------------------------------------------------CTTGTAAACCAA-------------CAACAACCACAACA-------------------------A--------------C------GACAA--CAA-----------------C----------------TTGTAAA-------------------------CCAA---CAACAGCC---------TCAACAACAACAACAACCACAA------CAACAACA------A------------------CCACAA---------CAA-CTSizeHit CountTotal NormTotal
No Reads
droBia1
GGAGA----------------------------------------------------------------------------------TGCAGCA--GCTGCGCCGC---------------------------------------------------------------------------------------------------------------------------CAACAGCAGCAGG-GGCAGCAGT------------C-----------------------------------------------------------------------------------------------GCAT-----------------------------------------------------------------------------------TTCGG---G-------------------GCA--TCAGG-G------------------------GACGAGGAT---CACGAG------CAGAAACAACAGCAAC-AGGCACATAACCAA---CCACTACAAC-------CA---ACACAGCA---------CCACCAACTACAACCACAACAA------CAGCAACA------A------------------CAGCAA---------CAA-CASizeHit CountTotal NormTotal
No Reads
droTak1
ATC---------------------------------------------------------------------------GCAGGTGGTGGCAGCT--GCCGCAGCGG----------------CCG------------------------------------------------------------------------------C------------------------CCAGCAGTTGCAAG-TTCAGCAGCAACAGCAACAGCATCACC------------------------------------------------------------------------------------A-------------------------------------------------------------------TGTACAAACCAC-------------CCAGATTCAGCACATTCA---AGTGCAATC------------------------------------TGCACCG---CCCCCG--------------------------------------------------------------CAACAACA---------GCAGCAGCAGCAACAACAGCAG------CAGCAACA------G------------------CAGCAG---------CAG-CASizeHit CountTotal NormTotal
No Reads
droEug1
TTTG-------------------------------------------------------------TCATATTT-----GCAGTTAGCAACAACAACATTACAACAA----------------GTACAGC----------------T--AG-----------------------------------------------------T------------------------ACAGTTAGTGGAAACTACAACAACAACAACAACAACAAGCACC-----------------------------------------------------------------------------------TCAGTCACCA---AGCCCAAAACCAACCAACAAACTTTAAAAATAAAATCCACC--------------AAAAAAAACCAA-------------TCCA---------------------------------------------------ATCAACAAGAACAA-------------------------------------------------ACAACAACTACAAA-------AA---TAACAGCCACCTCCATTACAAGTACAACAACAACAACAA------CAACAACA------A------------------GAATAA---------CTA-GASizeHit CountTotal NormTotal
No Reads
dm3
AATTG--------------------------------------------------------TGTGCTGAGGTCATGTCGCTGGCGT---CGCCA--GTTGCAGCAG----------------CGGCAAC-------------------AA-----------------------------------------------------CAATGCAACAATGGGGCAGCAAC-------------------TGACGA---CT--ATAATGTCTGGC----------------------------CGGGCTCCACTCCTCTCACTCGCCTGGGCGGCATCAACTCAAATGGT--------------------------------------------------------------------------------------CTC-------------GCAGTTGTAAAGCTGC--------------------------------------------------------------------------------------------------------------------------------CAAGAGCA----------GACCGGCATGCGCAGCTGCAG------CAAACGCA------A------------------CAGCAG---------CAG-CASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................CACTCCTCTCACTCGCCTGGGCGGC........................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGGCGT---CGCCA--GTTGCAGCAG----------------CGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGCA----------GACCGGCATGCGCAGCTG...............................................................2611.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC--------------------------------------------------------------------------------------------------------------------------------CAAGAGCA----------GACCGGCATGCGCAGCT................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................TGAGGTCATGTCGCTGGCGT---CGCCA--GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................TGTGCTGAGGTCATGTCGCTGGCGT---C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
AATTG--------------------------------------------------------TGTGCTGAGGTCATGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCA------A------------------CAGCAG---------CAG-G.18100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCC------------------------------------------------------------AGGTGCCATC-----GCAGGTGGTCGCAGCA--GCCGCAGCAG----------------CTGCAGC-------------------GG-----------------------------------------------------C------------------------ACAGCAGCTGCAGG-TCCAGCATCAACAGCAGCAGCATCACC------------------------------------------------------------------------------------A-------------------------------------------------------------------TGTACAAACCAC-------------CCAGATTCAGCACATCCA---AGTGCAATC------------------------------------GGCACCG---CCCCCG--------------------------------------------------------------CAACAGCA---------GCAACAGCAACAGCAGCAGCAG------CAACAACA------G------------------CAGCAG---------CAG-CASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCG--------------------------------------------------------------CAACAGCA---------GCAACA............................................................................1821.00200002000000000000
...........................................................................................................................TGCAGC-------------------GG-----------------------------------------------------C------------------------ACAGCAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATCCA---AGTGCAATC------------------------------------GGCACCG---CCCCC..................................................................................................................................................................2911.00100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAGCAGCA.............................................................18200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------CAACAACA------G------------------CAGCAG---------CAG-..21200.05100000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA------G------------------CAGCAG---------CAG-CA20200.05100010000000000000
.......................................................................................................................................................................................................................................................GCATCAACAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
droSec2
GCC------------------------------------------------------------AGGTGCCATC-----GCAGGTGGTCGCAGCA--GCCGCAGCAG----------------CTGCAGC-------------------GG-----------------------------------------------------C------------------------ACAGCAGCTGCAGG-TCCAGCATCAACAGCAGCAGCATCACC------------------------------------------------------------------------------------A-------------------------------------------------------------------TGTACAAACCAC-------------CCAGATTCAGCACATCCA---AGTGCAATC------------------------------------GGCACCG---CCCCCG--------------------------------------------------------------CAACAGCA---------GCAACAGCAACAGCAGCAGCAG------CAACAACA------A------------------CAGCAG---------CAG-CASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCA---AGTGCAATC------------------------------------GGCACCG---CC.....................................................................................................................................................................2311.0010001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAGCAGCAG------CAACA.................................................24200.0510010
droYak3
GCC------------------------------------------------------------AGGTGCAATC-----GCAGGTGGTCGCAGCA--GCCGCAGCAG----------------CGG------------------------------------------------------------------------------C------------------------ACAGCAGCTGCAGG-TCCAGCAGCAACAGCAGCAGCATCACC------------------------------------------------------------------------------------A-------------------------------------------------------------------TGTACAAACCAC-------------CCAGATCCAGCACATTCA---AGTGCAATC------------------------------------GGCGCCG---CCCCCA------C--------------------------------------------------------AGCAGCA---------GCAGCAGCAACAACAACAGCAG------CAGCAACA------G------------CAATCACAGCAG---------CAA-CASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------G------------CAATCACAGCAG---------CAA-..2120.50101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------G------------CAATCACAGCAG---------CAA-CA2120.50101000000000
....................................................................................................................................................................................................................................................CCAGCAGCAACAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10202000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA------C--------------------------------------------------------AGCAGCA---------GCAGCAGCA.........................................................................20200.10201010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAACAGCAG------CAGCA.................................................24200.10202000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAGCAG------CA....................................................19200.05100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------C--------------------------------------------------------AGCAGCA---------GCAGCAGCAACA......................................................................21200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---------GCAGCAGCAACAACAACAGC..............................................................26200.05100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAACAGCAG------CAGCAAC...............................................26200.05100010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------GCAGCAGCAACAACAACAGCAG------CAGC..................................................27200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAGCAG------CAGC..................................................20200.05101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAACAACAGC..............................................................20200.05101000000000
droEre2
CTGCC----------------------------------------------------------CGCCGCCCGT--------GGTG-ATGCGGAA--TCTGCAGCAG----------------CAGCAAC-------------------AA-----------------------------------------------------C----------------------A-ACATCAGCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAT-------------GCTCAGTC----------------------------------------C-----CAGCGGCAATGG----------------------------------CAATCTTTTGTATACTCAG-------------------------CA---ACAGCA------GCAGGGTCAGC------AGCAG------CAACCACAACAACAGCAGCAAGGACCACCAATTCGCTTT---------CAA-CASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTC----------------------------------------C-----CAGCGGCAATGG----------------------------------CAATCTTT.......................................................................................................................................2611.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCAG-------------------------CA---ACAGCA------GCAGGGTCAGC------.................................................................2711.0010000010
.....................................................................................................................................................A-----------------------------------------------------C----------------------A-ACATCAGCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAT-------------GCTCAGTC----------------------------------------C-----C............................................................................................................................................................................................2811.0011000000
......................................................................CGT--------GGTG-ATGCGGAA--TCTGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATACTCAG-------------------------CA---ACAGC.........................................................................................1911.0011000000
.................................................................................GGTG-ATGCGGAA--TCTGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ACAGCA------GCAGGGTCAGC------AGC..............................................................2111.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTTGTATACTCAG-------------------------CA---..............................................................................................1911.0011000000
......................................................................................ATGCGGAA--TCTGCAGCAG----------------CAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
.....................................................................................................AGCAG----------------CAGCAAC-------------------AA-----------------------------------------------------C----------------------A-ACATCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010000010

Generated: 05/18/2015 at 02:09 AM