ID:

dmo_2180

 Coordinate:

scaffold_6540:33964674-33964824 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.4 -18.3 -18.3

Flybase annnotation

CDS [Dmoj\GI10844-cds]; exon [dmoj_GLEANR_10739:4]; intron [Dmoj\GI10844-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus+
AT_richLow_complexityLow_complexity+
mature
  1. scaffold_71:1243-1269 +
  2. scaffold_120:1200-1226 +
  3. scaffold_1855:1980-2006 +
  4. scaffold_4207:4555-4581 +
  5. scaffold_5804:5274-5300 +
  6. scaffold_6345:111887-111913 +
  7. scaffold_6473:4721085-4721111 +
  8. scaffold_6496:26605063-26605089 +
  9. scaffold_6496:26614442-26614468 +
  10. scaffold_6496:26809820-26809846 +
  11. scaffold_6496:26815903-26815929 +
  12. scaffold_6498:1918046-1918072 +
  13. scaffold_6498:2051511-2051537 +
  14. scaffold_6498:2160358-2160384 +
  15. scaffold_6498:2605884-2605910 +
  16. scaffold_6500:12940224-12940250 +
  17. scaffold_6540:14622365-14622391 +
  18. scaffold_6540:32627320-32627346 +
  19. scaffold_6541:2535534-2535560 +
  20. scaffold_6680:19699541-19699567 +
  21. scaffold_314:988-1014 +
  22. scaffold_316:1089-1115 +
  23. scaffold_2861:1469-1495 +
  24. scaffold_3992:486-512 +
  25. scaffold_4018:2513-2539 +
  26. scaffold_4110:468-494 +
  27. scaffold_6308:219092-219118 +
  28. scaffold_6333:38455-38481 +
  29. scaffold_6359:940546-940572 +
  30. scaffold_6473:12511326-12511352 +
  31. scaffold_6496:8191229-8191255 +
  32. scaffold_6498:2106679-2106705 +
  33. scaffold_6498:2307134-2307160 +
  34. scaffold_6500:1657823-1657849 +
  35. scaffold_6540:4750261-4750287 +
  36. scaffold_6540:15916339-15916365 +
  37. dmo_2180  scaffold_6540:33964680-33964706 +
  38. scaffold_6541:873498-873524 +
  39. scaffold_6541:2187285-2187311 +
  40. scaffold_6680:5821097-5821123 +
star
  1. scaffold_1811:22417-22443 +
  2. scaffold_4008:901-927 +
  3. scaffold_4008:7016-7042 +
  4. scaffold_4114:705-731 +
  5. scaffold_4151:193-219 +
  6. scaffold_4569:69886-69912 +
  7. scaffold_6325:15723-15749 +
  8. scaffold_6342:11700-11726 +
  9. scaffold_6356:43926-43952 +
  10. scaffold_6468:114068-114094 +
  11. scaffold_6470:13167-13193 +
  12. scaffold_6473:6553638-6553664 +
  13. scaffold_6500:3737026-3737052 +
  14. scaffold_6500:29248826-29248852 +
  15. scaffold_6540:1058164-1058190 +
  16. scaffold_6540:16136893-16136919 +
  17. scaffold_6541:1354378-1354404 +
  18. scaffold_6541:1359770-1359796 +
  19. scaffold_6680:19501331-19501357 +
  20. scaffold_6680:24385417-24385443 +
  21. scaffold_577:327-353 +
  22. scaffold_2781:1492-1518 +
  23. scaffold_2861:1517-1543 +
  24. scaffold_4110:516-542 +
  25. scaffold_4614:3500-3526 +
  26. scaffold_6359:940594-940620 +
  27. scaffold_6437:42445-42471 +
  28. scaffold_6473:12511374-12511400 +
  29. scaffold_6496:8191277-8191303 +
  30. scaffold_6496:15640428-15640454 +
  31. scaffold_6498:2106727-2106753 +
  32. scaffold_6498:2236308-2236334 +
  33. scaffold_6500:1657871-1657897 +
  34. scaffold_6500:11905474-11905500 +
  35. scaffold_6500:14930992-14931018 +
  36. scaffold_6540:922719-922745 +
  37. scaffold_6540:4509216-4509242 +
  38. dmo_2180  scaffold_6540:33964728-33964754 +
  39. scaffold_6541:2187333-2187359 +
  40. scaffold_6680:5821145-5821171 +
  41. scaffold_251:550-576 -
  42. scaffold_4174:5369-5395 -
  43. scaffold_5871:4044-4070 -
  44. scaffold_6318:40038-40064 -
  45. scaffold_6373:94872-94898 -
  46. scaffold_6454:35500-35526 -
  47. scaffold_6462:40479-40505 -
  48. scaffold_6473:1506947-1506973 -
  49. scaffold_6473:14056291-14056317 -
  50. scaffold_6498:1239280-1239306 -
  51. scaffold_6500:4426806-4426832 -
  52. scaffold_6500:24340754-24340780 -
  53. scaffold_6500:30467997-30468023 -
  54. scaffold_6500:30787533-30787559 -
  55. scaffold_6500:30805918-30805944 -
  56. scaffold_6540:276357-276383 -
  57. scaffold_6540:1178079-1178105 -
  58. scaffold_6540:18176901-18176927 -
  59. scaffold_6680:23992470-23992496 -
  60. scaffold_6680:24355134-24355160 -
  61. scaffold_782:3140-3166 +
  62. scaffold_1790:1629-1655 +
  63. scaffold_4094:18-44 +
  64. scaffold_4251:2219-2245 +
  65. scaffold_4649:4113-4139 +
  66. scaffold_6344:64206-64232 +
  67. scaffold_6496:23653064-23653090 +
  68. scaffold_6498:647977-648003 +
  69. scaffold_6498:697857-697883 +
  70. scaffold_6498:1431661-1431687 +
  71. scaffold_6500:29781487-29781513 +
  72. scaffold_6500:30654389-30654415 +
  73. scaffold_6500:30658658-30658684 +
  74. scaffold_6540:1869582-1869608 +
  75. scaffold_6540:7262974-7263000 +
  76. scaffold_6541:2042708-2042734 +
  77. scaffold_6680:6659048-6659074 +
  78. scaffold_6680:23123317-23123343 +
  79. scaffold_6680:23501052-23501078 +
  80. scaffold_6680:23856347-23856373 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTGTGTGTGTGTGTGTGCGTGTTTCTTGTGTAAGCTGAAAGTCGCGAAAAAGTATTGAAATATCTATTGCTCCAAGGGTTCAGGGGATCTCGTAGTCGAGCAGTCTCGACTAGAGCTTTCTTACTTGTTTTTTTTTATAGATAATTACGATATATAATAATAATAATATTAAAACTTTACTTGCTACAATTAAATTCGTAGACCAAGCAGAACCCGAAGGACAAGCAACTCACATGGGATGTGCACTTCTG
********************************************************...................((((..((((((.(((.((((((((....))))))))))).)))))))))).....************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V056
head
 M060
embryo
 V041
embryo
 V049
head
 V110
male body
.....................................................................................................................................................................................................................................TCACATGGGATGTGCACTTCTG 22 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................CAAGCAACTCACATGTGATGTG........ 22 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................................GAATACCAAGCAGAACCCGAAG................................ 22 2 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................................AAGGACAAGCAACTCACATG............... 20 0 1 1.00 1 1 0 0 0 0 0
........................................................GAAATATCTATTGCTCCAAGGGTTCAG........................................................................................................................................................................ 27 0 20 0.25 5 0 0 5 0 0 0
....................................................................................................................................................GATTTATAATAATAATAATATT................................................................................. 22 1 7 0.14 1 1 0 0 0 0 0
............................TGTAAGCTGAAAGTCGCGAAAAAGAA..................................................................................................................................................................................................... 26 1 20 0.10 2 2 0 0 0 0 0
..............................................................................................................................................................................CTTCGCTTGCTACAATTAAC......................................................... 20 3 17 0.06 1 0 0 1 0 0 0
.............................................................................................................................................................................CCGTTGCTTGCTACAATTAA.......................................................... 20 3 18 0.06 1 1 0 0 0 0 0
...................................................................TGCTCCAAGGGTTCAGGGGATC.................................................................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0 0
..................................................................TTGCTCCAAGGGTTCAGGGGA.................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 1 0
........................................................................CAAGGGTTCAGGGGATCTCGTAGT........................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................CTCGACTAGAGCTTTCTTACTTGTTTT........................................................................................................................ 27 0 20 0.05 1 0 0 0 1 0 0
.....................................................ATTGAAATATCTATTGCTCCAAGGGTTC.......................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0
........................................................GGAATATCTATTGCTCCAAGGGTCC.......................................................................................................................................................................... 25 2 20 0.05 1 0 0 1 0 0 0
.....................................................................CTCCAAGGGTTCAGGGGATCTCGT.............................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................CCTCGACTAGAGCTTTCTTACTTGTTTTT....................................................................................................................... 29 1 20 0.05 1 1 0 0 0 0 0
..................................................................TTGCTCCAAGGGTTCAGGGGCTCTCG............................................................................................................................................................... 26 1 20 0.05 1 0 0 0 1 0 0
.......................................................................................TCTCGTAGTCGAGCAGTCT................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0
............................TGTAAGCTGAAAGTCGCGAAAA......................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 1 0 0
..................................................................TTGCTCCAAGGGTTCAGGGGATCTC................................................................................................................................................................ 25 0 20 0.05 1 0 0 0 0 0 1
..........................TGTGTAAGCTGAAAGTCGCGAAAAAG....................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0
.......................................................................................................TCTCGACTAGAGCTTTCTTACTTGTTT......................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CACACACACACACACACGCACAAAGAACACATTCGACTTTCAGCGCTTTTTCATAACTTTATAGATAACGAGGTTCCCAAGTCCCCTAGAGCATCAGCTCGTCAGAGCTGATCTCGAAAGAATGAACAAAAAAAAATATCTATTAATGCTATATATTATTATTATTATAATTTTGAAATGAACGATGTTAATTTAAGCATCTGGTTCGTCTTGGGCTTCCTGTTCGTTGAGTGTACCCTACACGTGAAGAC
************************************************************************************************************************...................((((..((((((.(((.((((((((....))))))))))).)))))))))).....******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
.............ACACGCACAAAGAACACATTCGACT..................................................................................................................................................................................................................... 25 0 20 15.10 302 302 0
.......................................................................................................................................................................................GAAGCTAAATTAAGCATCTG................................................ 20 3 7 0.71 5 0 5
.......................................................................................................................................................................................GATGCTAAATTAAGCATTTGGT.............................................. 22 3 2 0.50 1 0 1
.......................................................ACTTTATAGATAACGAGGTTCCCAAG.......................................................................................................................................................................... 26 0 20 0.15 3 3 0
.............................................................................CAAGTCCCCTAGAGCATCAGCTC....................................................................................................................................................... 23 0 20 0.10 2 0 2
......................................TTCAGCGCTTTTTCATAACTTTATAGATC........................................................................................................................................................................................ 29 1 20 0.10 2 2 0
.....................................................................GAGGTTCCCAAGTCCCCT.................................................................................................................................................................... 18 0 20 0.10 2 0 2
................................................................................GTCCCCTAGAGCATCAGCTCGT..................................................................................................................................................... 22 0 20 0.10 2 2 0
......................................AACAGCGCTTTTTCATAACTTTATAGA.......................................................................................................................................................................................... 27 2 20 0.05 1 1 0
.......................................CCAGCGCTTTTTCATAACTTTATAGT.......................................................................................................................................................................................... 26 2 20 0.05 1 0 1
........................................................................................GAGCATCAGCTCGTCAGAGCT.............................................................................................................................................. 21 0 20 0.05 1 1 0
.............................................................................CAAGTCCCCTAGAGCATCAGCTCGTCAG.................................................................................................................................................. 28 0 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:33964624-33964874 + dmo_2180 GTGTGTGTGTGTGTGTG-CGT----GTTTCTTGT-------------GTAA-----------GCTGAA--------AGTCGCGAAAAAGTATTGAAATATCT----------------------------------------------------------------AT---------------------------------------------------------TGCTCCAAGGGTTCAGGGGATCTCGTAGTCGAG-C---AGTCTCGA-----CTAGAGCTTTCTTACTTGTTT------TTTTT--------------TATAGATAATTACGA-------------------------------------------------------------------------------------------------------------------------------------------TATATAATAATA--------------------------------------ATAATATTAAAACTTTACTTGCTACAATTAAATTCGTAGACCAAGCAGAACCCGAA-----------GGACAAGCAACTCACATGGGATGTGCACTTCTG
droVir3 scaffold_12970:8787102-8787293 + TTGTATGTGTGTTACTG-TGTAAGTGTGTATGGG-------------ATAA----------AGCTGGA--------AGCTGTGTAAAGATAC-------------AAAG--CT-----------------------------------------------------------------------------------------------------------CGGCC------AGTGGTTCAGAATATCTCCTACTCGAGTG----CACCCGA-----CTAGAACACATTTGCTTTTCC------TTTTT----AATTCCCTTATACCATAGAT-TTAC-------------------A---------------------------------------------ATTAAACT-------------------------------------------------------------------------TGAAA----------------------------CATTT----------------------------ACAATGTAGTTTGA-----------------------------------------------------------AG--
droGri2 scaffold_15252:15863853-15864101 + CGGCTTA-GTGCGTTTAGTGTAAATAT----TTT-------------AAAT-----------GGAAAT--------ATTCCAATATATATTT-------------GCATATAT-----------------------------------------------------------------------------------------------------------TTAACGGGGTTCAAGGT-------ATATCGTAATCGAGCT----CACTCGA-----CTACAGCACTCTTACTTGTTT------ATTAACTATATT-------TTAAGTTATTTCCAAA--------ATATATGAAT-GTAC--------------------------------TAAT-----GTTTTGCCCGCAGCTATATATATATAT-------------------------GTGTAATCCAATTAGCAGTCAG------------------------------------------------------------------------------------------------------TGTA-----------GCTCAAACATCTGACATATTGTAT-----GC--
droWil2 scf2_1100000004909:5810995-5811234 + GTATATTTGTGTAT-TG-TAT----ACTACAGCTTAGCATTTCATTGATAA-----------A--TAA--------AGGGAGGAAAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-T----AATTTAA-----TTTAAATTCTTCGCTTAGAT-------------------------------------------------TTGTTACTAAA-ATGG--------------------------------TGGA-----GAGCAGGGAGATGTTATATACATATATGTATATACAGTTTACCAACCAACTA----------------------TATACAAAAAAA--------------------------------------AAAATAAGAAAATTTTAAA--------TA-----------------AAAACCAAAAACAAAAACACAACTTAAATGAGACAAAC---------AAATC--
dp5 4_group2:248147-248257 + GTGTGTGCGTGTGTGTG-CGT----GTTTGAGGA-------------ATGA-----------AATCA---------------------------------TAAATCTGGA-------------------------------------ATTGCAATTGTAATCATGTTTTGCC--------------------------------------------------------CCAACGAGA-------GGCCGAGTGGCCGA-G----AGGTCGA-----C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTA-------------------------------AA--
droPer2 scaffold_4:4703609-4703754 + GTGTGTGTGTGTGTGTG-TGT----GTTGCTGCT-------------GTGA------------------------------------------------------------------------------------------------------------------------CCCAAAATGAGACAAAATATTCAAACATTCAG------------------------AGCGTAG-------------------GCCCC-G----TAGTCCA-----TTGTTGTGCTCTA--TTCTTG------TTGTT--------------TTTGTTTTGTTTTTCCTTACGATCTATT--------------------------------------------ACGA------------------------------------------------------------------------------TCT-----------------------------------------------------------------------------------------------------------------------------------------------AT--
droAna3 scaffold_13089:122131-122324 + GTCTGTCTGTCTGTCTG-TCT----GTTTCTA-----------------T-GCAAA--CTAG-T-----CTC-------TGAGTTTT-----------------------------------------------AAAGCTATCGA--GTTGAA------------------------------------------------ACTTT----------------------------------GCACA-------------------CATCCTT-----CTTTAGCTTTCTTAGCT---------------------------------------TTCCTT--------TCTT------------------------------------GTTTTATTTTA-----AACTACTGAATTC-TTTTTTCATTAGT-------------------------GTGATACACAATAACCAATAAC----------------------------------------CAC--AAATAACAATTTTAAAATTT---------------------------------------------------------------------------------TA--
droBip1 scf7180000395548:77824-77964 + TGTAC---GTGTGTGTG-CGT----GTTTTTTTT-------------TTAA-TGTG--CTTG-C-----CTGA---AATTGATTAA----------TT-------------------------GCTGAAAAGGGAAGATAAAGGAAT------------------------------------------------------AGTTCGTAGGCCTTTCGCATT--------------------------------------------GGCAG-----TTGTTGCTTTTCCTCTAGCTT------TTGTT--------------TTA------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------AAC-------------------------AA--
droKik1 scf7180000302248:139142-139306 + AAAATG-----------------------------------------------------------------------------------TAATGAAATA----------------------------------------------------------------------------------------------------------------------------ATATCTGCAAGGGT-------ATACAAACTTCGGC-G----TG-CCGA-----AGTTAGCTTCCTTTCTTGTTT------TGTAT--------------TAAAATTAATTTTAA-------------------------------------------------------------------------------------------------------------------------------------------TTTAAGATGAAAAACCTTTTAAAAATCAAGGCTCTTTCTT----------ATCTT------------------ACACTGCAATTCCAAGGCCAA----------------TAACA-------------------------------AC--
droFic1 scf7180000454077:576212-576388 - GTGTGTGTGTGTGAGTG-AGT----GAGCTTTGT-------------ATATGGGTTCCTTTTCCTGAG--------AGCTAAATAATG---------------------TCCCCCAAATGAATATTGCCA-------------------------------------------------------------------------------------------------AGTGCAG-------------------GGCGA-G----AAATCGACTCGATTA--GTTTTT-TTCTCATTTATATTATTCTT--------------GTAAAACAAA-------------------------ACATC-----------------------------------------------T------------------------------------------------------------------TATAACATAAAA--------------------------------------TTAATTT---------------------------TAA-----------------------------------------------------------AA--
droEle1 scf7180000491238:156868-156996 + AAAAATATTTAATTCTT-GCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGCTGCAAGGGT-------ATATGAACTTCGGC-T----TG-CCGA-----AGTTTGCTTTCTTTCTTGTTT------TTTTT--------------TTTGGTTAAC-------------------------ATTTT-----------------------------------------------T------------------------------------------------------------------GATTTCCCAAAA--------------------------------------------------CTTTATTTGCGTCAAT------T-T-----------------------------------------------------------AA--
droRho1 scf7180000771158:15123-15286 - GCATATACATATGTATG-TAT----TTACATTGT-------------ACAC-----------AGTTGC--------AATTGCATATTTATAT-------------TAAGTTGT-----------------------------------------------------------------------------------------------------------TTAGCTGAGTAACGGGT-------ATCTAATAGTCGAG-G----CACTCGA-----CTATAGCGTTCTCTCTTGTTT------TATTA--------------TACTATTAACTATAT-------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------ATTATT----------ATCATA------------------CCT-------TAA-----------------------------------------------------------AA--
droBia1 scf7180000301495:1034899-1035005 + GGGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGGT-------ATCTGATAGTCGAG-G----CACTCGA-----CAATAGCGTTCTTCCTTGTTT------TTTTT--------------TAAGTATCACTGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAGCAACAATCCTTAAAAATTTCACGT---------GTTAC--
droTak1 scf7180000414515:60317-60445 + GGGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGATAGTCGGG-ACACCAACCCGA-----CTATAGCGTTCTCTCTTGTTT------TTAAA--------------TTTTTATAATTGCAAA--------ATAA------------------------------------GTATTATTTCAATTTT--------------------------------------------------------------------------TATAATAAAAAG--------------------------------------TGTAT--------------------AATAAAAATTG------------------GA----GAATA-------------------------------AG--
droEug1 scf7180000409117:85658-85822 + GAGTGTTTTTGTGTATG-CGT----ATGCTTCGT-------------TCAA-----------GTTTCAACTAAAATATGTTTTTAC----------TT-------------------------TCTGATT-TTAACAACACAGGAAC-----A------------------------------------------------AGTTTGTAA------------------------------------------GTC-----------TACGC-----TTAAAGTTTCTTTCTCTATTT------TGTTT--------------T-------------------------------------------------------------------------C-----ATAAAATTAATAC-GA----------------------------------------------------------AATAC---GAAA---------------------------------AAAAATTAACAC------------------------------------------------------------------------------------------T--
dm3 chrX:77959-78066 - CAAAAA---------------------------------------------------------------------------------AATATCGGAGTTTCTCCTTCACTCTT-----------------------------------------------------------------------------------------------------------CCAGTTGAGTAACGGGT-------ATCTGATAGTCGAG-G----AACTCGA-----CTACAGCATTTTTTCTTGTTT------TTTTT--------------CACATTTTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2r:1873977-1874106 - CAGAAA---------------------------------------------------------------------------------AATGATGAAATTTCGAGTTCGCA--------------------------------------------------------------------------------------------------------TTCACACTAACTGAGTTAAGAGT-------ATCTGATAGTCTGG-G----AACTCGA-----CTATAGCTTTCTGTCTTGTTT------CTATA--------------TACATATATATTTAT-------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------GTTATT----------GTTATAT------------------------------------------------------------------------------------------T--
droSec2 scaffold_26:304898-304992 + GGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGATAGTCGGG-G----AACTCGA-----CTATAGCCTTCTTTCTTGTTG------TTCTT--------------TATGTCTAAG---------------------------------------------------------------------------------------------------------------------------------AAAATAACAAAACAG----------------------------------------CATTTAAAAAATAATTT------------------------------------------------------------------------------------------T--
droYak3 v2_chrUn_6995:58956-59132 + AAACCGCCA---------------------------------------------------------------------------AAAACTGTCAGAAGATCTCCTTCGCA--------------------------------------------------------------------------------------------------------CTATCACTAGCTGAGTAACGGGT-------ATCAGATAGTCGGG-G----AACTCGA-----CTATAGCGTTCTCTCTTGTTT------TTTTT---TAAT-------TTTGTTTATTTCCATA--------TATA------------------------------------GTTTTATTTCC-----ATTTAATTTACAC-AT-----------------------------------------------TTTGCAGTT---------------------------------------------------------TC---------------------------------------------TGGG-----------GACC-------------------------AA--
droEre2 scaffold_4845:10874420-10874646 + GTATGTATGTGCGTATG-TAT----GTATGTA-----------------T-GTATG--TAT-GT-----ATG-------CATGTACGTATGT-------------ACGTATGT-------------------ATGTGTTA--------------------------CT----------------------------------------------------TGCACAAAGTAGT-----AAAAATATCTGATATCTGAT-A----TATATGA-----CTATAGCATTCTATCTTCTTT------TTGTC--------------TTTTTGCTCTGCGC---------------------ATTTCCGATTCTGTGTACGCTAATAATAAATATTG--CAAATATT--------------------------------------------------------------------------TATTACAGAAAA--------------------------------------TG-C------------------TTTAATTACATTTG------------------------------------------------------------CA--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GTGTGTGTGTGTGTGTG-CGT----GTTTCTTGT-------------GTAA-----------GCTGAA--------AGTCGCGAAAAAGTATTGAAATATCT----------------------------------------------------------------AT---------------------------------------------------------TGCTCCAAGGGTTCAGGGGATCTCGTAGTCGAG-C---AGTCTCGA-----CTAGAGCTTTCTTACTTGTTT------TTTTT--------------TATAGATAATTACGA-------------------------------------------------------------------------------------------------------------------------------------------TATATAATAATA--------------------------------------ATAATATTAAAACTTTACTTGCTACAATTAAATTCGTAGACCAAGCAGAACCCGAA-----------GGACAAGCAACTCACATGGGATGTGCACTTCTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACATGGGATGTGCACTTCTG2211.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----------GGACAAGCAACTCACATG...............2011.001100000
.............................................................................................GAAATATCT----------------------------------------------------------------AT---------------------------------------------------------TGCTCCAAGGGTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................27200.255000050
.................................................................................................................................................................................................................................TGCTCCAAGGGTTCAGGGGATC...........................................................................................................................................................................................................................................................................................................................................................................................22200.051000100
.......................................................................................................................................................................T---------------------------------------------------------TGCTCCAAGGGTTCAGGGGA.............................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
......................................................................................................................................................................................................................................CAAGGGTTCAGGGGATCTCGTAGT....................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
..........................................................................................................................................................................................................................................................................CTCGA-----CTAGAGCTTTCTTACTTGTTT------T..................................................................................................................................................................................................................................................................................................................................27200.051010000
..........................................................................................ATTGAAATATCT----------------------------------------------------------------AT---------------------------------------------------------TGCTCCAAGGGTTC...................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
...................................................................................................................................................................................................................................CTCCAAGGGTTCAGGGGATCTCGT.......................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.....................................................................................................................................................................................................................................................TCTCGTAGTCGAG-C---AGTCT......................................................................................................................................................................................................................................................................................................................................................................19200.051100000
.................................T-------------GTAA-----------GCTGAA--------AGTCGCGAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.......................................................................................................................................................................T---------------------------------------------------------TGCTCCAAGGGTTCAGGGGATCTC.........................................................................................................................................................................................................................................................................................................................................................................................25200.051000001
...............................TGT-------------GTAA-----------GCTGAA--------AGTCGCGAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.........................................................................................................................................................................................................................................................................TCTCGA-----CTAGAGCTTTCTTACTTGTTT------...................................................................................................................................................................................................................................................................................................................................27200.051100000
droVir3
TTGTATGTGTGTTACTG-TGTAAGTGTGTATGGG-------------ATAA----------AGCTGGA--------AGCTGTGTAAAGATAC-------------AAAG--CT-----------------------------------------------------------------------------------------------------------CGGCC------AGTGGTTCAGAATATCTCCTACTCGAGTG----CACCCGA-----CTAGAACACATTTGCTTTTCC------TTTTT----AATTCCCTTATACCATAGAT-TTAC-------------------A---------------------------------------------ATTAAACT-------------------------------------------------------------------------TGAAA----------------------------CATTT----------------------------ACAATGTAGTTTGA-----------------------------------------------------------AG--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
CGGCTTA-GTGCGTTTAGTGTAAATAT----TTT-------------AAAT-----------GGAAAT--------ATTCCAATATATATTT-------------GCATATAT-----------------------------------------------------------------------------------------------------------TTAACGGGGTTCAAGGT-------ATATCGTAATCGAGCT----CACTCGA-----CTACAGCACTCTTACTTGTTT------ATTAACTATATT-------TTAAGTTATTTCCAAA--------ATATATGAAT-GTAC--------------------------------TAAT-----GTTTTGCCCGCAGCTATATATATATAT-------------------------GTGTAATCCAATTAGCAGTCAG------------------------------------------------------------------------------------------------------TGTA-----------GCTCAAACATCTGACATATTGTAT-----GC--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GTATATTTGTGTAT-TG-TAT----ACTACAGCTTAGCATTTCATTGATAA-----------A--TAA--------AGGGAGGAAAAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-T----AATTTAA-----TTTAAATTCTTCGCTTAGAT-------------------------------------------------TTGTTACTAAA-ATGG--------------------------------TGGA-----GAGCAGGGAGATGTTATATACATATATGTATATACAGTTTACCAACCAACTA----------------------TATACAAAAAAA--------------------------------------AAAATAAGAAAATTTTAAA--------TA-----------------AAAACCAAAAACAAAAACACAACTTAAATGAGACAAAC---------AAATC--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
GTGTGTGCGTGTGTGTG-CGT----GTTTGAGGA-------------ATGA-----------AATCA---------------------------------TAAATCTGGA-------------------------------------ATTGCAATTGTAATCATGTTTTGCC--------------------------------------------------------CCAACGAGA-------GGCCGAGTGGCCGA-G----AGGTCGA-----C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTA-------------------------------AA--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....TGCGTGTGTGTG-CGT----GTTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.0710000100000
droPer2
GTGTGTGTGTGTGTGTG-TGT----GTTGCTGCT-------------GTGA------------------------------------------------------------------------------------------------------------------------CCCAAAATGAGACAAAATATTCAAACATTCAG------------------------AGCGTAG-------------------GCCCC-G----TAGTCCA-----TTGTTGTGCTCTA--TTCTTG------TTGTT--------------TTTGTTTTGTTTTTCCTTACGATCTATT--------------------------------------------ACGA------------------------------------------------------------------------------TCT-----------------------------------------------------------------------------------------------------------------------------------------------AT--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
GTCTGTCTGTCTGTCTG-TCT----GTTTCTA-----------------T-GCAAA--CTAG-T-----CTC-------TGAGTTTT-----------------------------------------------AAAGCTATCGA--GTTGAA------------------------------------------------ACTTT----------------------------------GCACA-------------------CATCCTT-----CTTTAGCTTTCTTAGCT---------------------------------------TTCCTT--------TCTT------------------------------------GTTTTATTTTA-----AACTACTGAATTC-TTTTTTCATTAGT-------------------------GTGATACACAATAACCAATAAC----------------------------------------CAC--AAATAACAATTTTAAAATTT---------------------------------------------------------------------------------TA--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................TGAA------------------------------------------------ACTTT----------------------------------GCACA-------------------CATCCTT-----CTTT..........................................................................................................................................................................................................................................................................................................................................................25201.50300300000
...............................................................................TGAGTTTT-----------------------------------------------AAAGCTATCGA--GTTGAA------------------------------------------------AC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2770.292020000
....................................................................................................................................................TTGAA------------------------------------------------ACTTT----------------------------------GCACA-------------------CATCCTT-----CTTT..........................................................................................................................................................................................................................................................................................................................................................26200.255500000
....................................................................................................................................................TTGAA------------------------------------------------ACTTT----------------------------------GCACA-------------------CATCCTT-----CTTTA.........................................................................................................................................................................................................................................................................................................................................................2760.171010000
...........................................................................................................................................TATCGA--GTTGAA------------------------------------------------ACTTT----------------------------------GCACA-------------------CATCCT....................................................................................................................................................................................................................................................................................................................................................................28200.153030000
.....................................................................................................................................................TGAA------------------------------------------------ACTTT----------------------------------GCACA-------------------CATCCTT-----CT............................................................................................................................................................................................................................................................................................................................................................23200.102002000
.....................................................................................................................................................TGAA------------------------------------------------ACTTT----------------------------------GCACA-------------------CATCCT....................................................................................................................................................................................................................................................................................................................................................................20200.102020000
.....TCTGTCTGTCTG-TCT----GTTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
......CTGTCTGTCTG-TCT----GTTTCTA-----------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
.........................................................................................................................................GCTATCGA--GTTGAA------------------------------------------------ACTTT----------------------------------GCACA-------------------CATCC.....................................................................................................................................................................................................................................................................................................................................................................29200.051010000
droBip1
TGTAC---GTGTGTGTG-CGT----GTTTTTTTT-------------TTAA-TGTG--CTTG-C-----CTGA---AATTGATTAA----------TT-------------------------GCTGAAAAGGGAAGATAAAGGAAT------------------------------------------------------AGTTCGTAGGCCTTTCGCATT--------------------------------------------GGCAG-----TTGTTGCTTTTCCTCTAGCTT------TTGTT--------------TTA------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------AAC-------------------------AA--SizeHit CountTotal NormTotal
No Reads
droKik1
AAAATG-----------------------------------------------------------------------------------TAATGAAATA----------------------------------------------------------------------------------------------------------------------------ATATCTGCAAGGGT-------ATACAAACTTCGGC-G----TG-CCGA-----AGTTAGCTTCCTTTCTTGTTT------TGTAT--------------TAAAATTAATTTTAA-------------------------------------------------------------------------------------------------------------------------------------------TTTAAGATGAAAAACCTTTTAAAAATCAAGGCTCTTTCTT----------ATCTT------------------ACACTGCAATTCCAAGGCCAA----------------TAACA-------------------------------AC--SizeHit CountTotal NormTotal
No Reads
droFic1
GTGTGTGTGTGTGAGTG-AGT----GAGCTTTGT-------------ATATGGGTTCCTTTTCCTGAG--------AGCTAAATAATG---------------------TCCCCCAAATGAATATTGCCA-------------------------------------------------------------------------------------------------AGTGCAG-------------------GGCGA-G----AAATCGACTCGATTA--GTTTTT-TTCTCATTTATATTATTCTT--------------GTAAAACAAA-------------------------ACATC-----------------------------------------------T------------------------------------------------------------------TATAACATAAAA--------------------------------------TTAATTT---------------------------TAA-----------------------------------------------------------AA--SizeHit CountTotal NormTotal
No Reads
droEle1
AAAAATATTTAATTCTT-GCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGCTGCAAGGGT-------ATATGAACTTCGGC-T----TG-CCGA-----AGTTTGCTTTCTTTCTTGTTT------TTTTT--------------TTTGGTTAAC-------------------------ATTTT-----------------------------------------------T------------------------------------------------------------------GATTTCCCAAAA--------------------------------------------------CTTTATTTGCGTCAAT------T-T-----------------------------------------------------------AA--SizeHit CountTotal NormTotal
No Reads
droRho1
GCATATACATATGTATG-TAT----TTACATTGT-------------ACAC-----------AGTTGC--------AATTGCATATTTATAT-------------TAAGTTGT-----------------------------------------------------------------------------------------------------------TTAGCTGAGTAACGGGT-------ATCTAATAGTCGAG-G----CACTCGA-----CTATAGCGTTCTCTCTTGTTT------TATTA--------------TACTATTAACTATAT-------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------ATTATT----------ATCATA------------------CCT-------TAA-----------------------------------------------------------AA--SizeHit CountTotal NormTotal
No Reads
droBia1
GGGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGGGT-------ATCTGATAGTCGAG-G----CACTCGA-----CAATAGCGTTCTTCCTTGTTT------TTTTT--------------TAAGTATCACTGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAGCAACAATCCTTAAAAATTTCACGT---------GTTAC--SizeHit CountTotal NormTotal
No Reads
droTak1
GGGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGATAGTCGGG-ACACCAACCCGA-----CTATAGCGTTCTCTCTTGTTT------TTAAA--------------TTTTTATAATTGCAAA--------ATAA------------------------------------GTATTATTTCAATTTT--------------------------------------------------------------------------TATAATAAAAAG--------------------------------------TGTAT--------------------AATAAAAATTG------------------GA----GAATA-------------------------------AG--SizeHit CountTotal NormTotal
No Reads
droEug1
GAGTGTTTTTGTGTATG-CGT----ATGCTTCGT-------------TCAA-----------GTTTCAACTAAAATATGTTTTTAC----------TT-------------------------TCTGATT-TTAACAACACAGGAAC-----A------------------------------------------------AGTTTGTAA------------------------------------------GTC-----------TACGC-----TTAAAGTTTCTTTCTCTATTT------TGTTT--------------T-------------------------------------------------------------------------C-----ATAAAATTAATAC-GA----------------------------------------------------------AATAC---GAAA---------------------------------AAAAATTAACAC------------------------------------------------------------------------------------------T--SizeHit CountTotal NormTotal
No Reads
dm3
CAAAAA---------------------------------------------------------------------------------AATATCGGAGTTTCTCCTTCACTCTT-----------------------------------------------------------------------------------------------------------CCAGTTGAGTAACGGGT-------ATCTGATAGTCGAG-G----AACTCGA-----CTACAGCATTTTTTCTTGTTT------TTTTT--------------CACATTTTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................TGAGTAACGGGT-------ATCTGATAGTCGAG-G----..........................................................................................................................................................................................................................................................................................................................................................................27199.371780000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000302010000300040000000334000000000000000000000000000000000001100000001000016000000000100029022231431100000000000000000000000000000000000000000000000000000000000100000011004000000510000000000000001502000002
.................................................................................................................................................................................................................................TGAGTAACGGGT-------ATCTGATAGTCGAG-...............................................................................................................................................................................................................................................................................................................................................................................26206.5513110000010100000000000001000000000000000100000003040001000000000000000000000000000002001100000000000000000000000001000000000000000000020300000002001100300202000000000000000000000000000000000000010020000000317000000000500000120290020000000000000000000000000000000000000000000000000000000000000000090040000001001000000000000001001000000
.................................................................................................................................................................................................................................TGAGTAACGGGT-------ATCTGATAGTC...................................................................................................................................................................................................................................................................................................................................................................................23204.7595000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000670000000000000000000000000
.................................................................................................................................................................................................................................TGAGTAACGGGT-------ATCTGATAGTCGA.................................................................................................................................................................................................................................................................................................................................................................................25203.95790000000000000000000001000000000001000000000000000000000000000000000000000000000000502000000000000000000000000001000000000000000000001000000000070010000100000000000000000000000000000000000000000000001000001200000000000010000170210000000000000000000000000000000000000000000000000000000000000000000000000000502000000000000000000000000
.................................................................................................................................................................................................................................TGAGTAACGGGT-------ATCTGATAGT....................................................................................................................................................................................................................................................................................................................................................................................22202.605200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000440000000000000000000000000000000000000000000000000000000000000000000000044000000000000000000000000000000000000
.........................................................................................................................................................................................................................................GGGT-------ATCTGATAGTCGAG-G----AAC.......................................................................................................................................................................................................................................................................................................................................................................22202.50500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003121116800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GGT-------ATCTGATAGTCGAG-G----AAC.......................................................................................................................................................................................................................................................................................................................................................................21201.853700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000095512400000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................T-------ATCTGATAGTCGAG-G----AACTC.....................................................................................................................................................................................................................................................................................................................................................................21201.152300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001600000000000000000000200000000000000010100000000000000000000000000000000000000000000000000000020000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................CGAG-G----AACTCGA-----CTACAGCA......................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TGAGTAACGGGT-------ATCTGATAGTCGAG-G----A.........................................................................................................................................................................................................................................................................................................................................................................28170.71120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000000000000000000000000000000000000000000000000000100000000110004300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TAACGGGT-------ATCTGATAGTCGAG-G----AAC.......................................................................................................................................................................................................................................................................................................................................................................26120.6780000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000002300000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................CGAG-G----AACTCGA-----CTACAGC.......................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................T-------ATCTGATAGTCGAG-G----AACTCGA-----..............................................................................................................................................................................................................................................................................................................................................................23160.5080000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001100000000000000000000000000000000000000000000000000000000000000000000000010000000000110000000000000100000
.................................................................................................................................................................................................................................TGAGTAACGGGT-------ATCTGATA......................................................................................................................................................................................................................................................................................................................................................................................20200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000503000000000000000000000000000000000
.................................................................................................................................................................................................................................TGAGTAACGGGT-------ATCTGATAGTCG..................................................................................................................................................................................................................................................................................................................................................................................24200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................GT-------ATCTGATAGTCGAG-G----AAC.......................................................................................................................................................................................................................................................................................................................................................................20200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................GAGTAACGGGT-------ATCTGATAGT....................................................................................................................................................................................................................................................................................................................................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020000000000000000000000000000000000000000000200000000
................................................................................................................................................................................................................................TTGAGTAACGGGT-------ATCTGATAGTC...................................................................................................................................................................................................................................................................................................................................................................................24130.2330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000
............................................................................................................................................................................................................................................T-------ATCTGATAGTCGAG-G----AACTCGA-----C.............................................................................................................................................................................................................................................................................................................................................................24140.2130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................AACGGGT-------ATCTGATAGTCGAG-G----AAC.......................................................................................................................................................................................................................................................................................................................................................................25150.2030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................CGGGT-------ATCTGATAGTCGAG-G----A.........................................................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001100000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TCTGATAGTCGAG-G----AACTCGA-----..............................................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100000000000000000000000000000000000000000100000000000000000000000000000000100000
.........................................................................................................................................................................................................................................GGGT-------ATCTGATAGTCGAG-G----AACTCGA-----..............................................................................................................................................................................................................................................................................................................................................................26130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................GAGTAACGGGT-------ATCTGATAGTC...................................................................................................................................................................................................................................................................................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TAACGGGT-------ATCTGATAGTCGAG-G----A.........................................................................................................................................................................................................................................................................................................................................................................24200.1530000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................CGGGT-------ATCTGATAGTCGA.................................................................................................................................................................................................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TAACGGGT-------ATCTGATAGTCGAG-G----AA........................................................................................................................................................................................................................................................................................................................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................ACGGGT-------ATCTGATAGTCGAG-G----..........................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000020000000000000000000000000
.......................................................................................................................................................................................................................................................TGATAGTCGAG-G----AACTCGA-----CT............................................................................................................................................................................................................................................................................................................................................................21170.1220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................GAGTAACGGGT-------ATCTGATAGTCGAG-G----..........................................................................................................................................................................................................................................................................................................................................................................26190.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................T-------ATCTGATAGTCGAG-G----AACTCGA-----CA............................................................................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................T-------ATCTGATAGTCGAG-G----AACTCGA-----CTA...........................................................................................................................................................................................................................................................................................................................................................26100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TAACGGGT-------ATCTGATAGTCGAG-G----..........................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................AACGGGT-------ATCTGATAGTCGAG-G----A.........................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.....................................................................................................................................................................................................................................TAACGGGT-------ATCTGATAGTCGAG-G----AACT......................................................................................................................................................................................................................................................................................................................................................................27120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................TTGAGTAACGGGT-------ATCTGATA......................................................................................................................................................................................................................................................................................................................................................................................21130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TGAGTAACGGGT-------ATCTGATAGTCGAG-G----AA........................................................................................................................................................................................................................................................................................................................................................................29160.0610000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................T-------ATCTGATAGTCGAG-G----AACTCG....................................................................................................................................................................................................................................................................................................................................................................22170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CTGATAGTCGAG-G----AACTCGA-----C.............................................................................................................................................................................................................................................................................................................................................................21170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................ACGGGT-------ATCTGATAGTCGAG-G----AAC.......................................................................................................................................................................................................................................................................................................................................................................24170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................AACGGGT-------ATCTGATAGTCGA.................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................GAGTAACGGGT-------ATCTGATAGTCGAG-...............................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................T-------ATCTGATAGTCGAG-G----AACT......................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................GTAACGGGT-------ATCTGATAGTCGAG-G----..........................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................ATCTGATAGTCGAG-G----AAC.......................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................GAGTAACGGGT-------ATCTGATAGTCGA.................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................AACGGGT-------ATCTGATAGTCG..................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................TCTGATAGTCGAG-G----AACTCG....................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
droSim2
CAGAAA---------------------------------------------------------------------------------AATGATGAAATTTCGAGTTCGCA--------------------------------------------------------------------------------------------------------TTCACACTAACTGAGTTAAGAGT-------ATCTGATAGTCTGG-G----AACTCGA-----CTATAGCTTTCTGTCTTGTTT------CTATA--------------TACATATATATTTAT-------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------GTTATT----------GTTATAT------------------------------------------------------------------------------------------T--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................TAAGAGT-------ATCTGATAGTCTGG-G----AACT......................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.............................................................................................................................................................................................................................................................................................TCTGTCTTGTTT------CTATA--------------TACATATA........................................................................................................................................................................................................................................................................................................2511.00100100000000000000
.................................................................................................................................................................................................................................TGAGTTAAGAGT-------ATCTGATAGTCTGG-G----A.........................................................................................................................................................................................................................................................................................................................................................................2811.00100000000100000000
.................................................................................................................................................................................................................................TGAGTTAAGAGT-------ATCTGATAGTCTG.................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.........................................................................................................................................................................................................................ACACTAACTGAGTTAAGAGT-------ATCTGA........................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
..........................................................................................................................................................................................................................................................TAGTCTGG-G----AACTCGA-----CTATAGCC......................................................................................................................................................................................................................................................................................................................................................2420.50100100000000000000
.................................................................................................................................................................................................................................................................G-G----AACTCGA-----CTATAGCTT.....................................................................................................................................................................................................................................................................................................................................................18100.50500000500000000000
..........................................................................................................................................................................................................................................................................CTCGA-----CTATAGCTTTCTGTC...............................................................................................................................................................................................................................................................................................................................................2020.50100000000001000000
............................................................................................................................................................................................................................................................................CGA-----CTATAGCTTTCTGTC...............................................................................................................................................................................................................................................................................................................................................1820.50101000000000000000
...........................................................................................................................................................................................................................................................................TCGA-----CTATAGCTTTCTGT................................................................................................................................................................................................................................................................................................................................................1820.50100000000001000000
..................................................................................................TTCGAGTTCGCA--------------------------------------------------------------------------------------------------------TTCACACT....................................................................................................................................................................................................................................................................................................................................................................................................................2060.17100000000100000000
............................................................................................................................................................................................................................................T-------ATCTGATAGTCTGG-G----A.........................................................................................................................................................................................................................................................................................................................................................................17100.10100000010000000000
droSec2
GGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGATAGTCGGG-G----AACTCGA-----CTATAGCCTTCTTTCTTGTTG------TTCTT--------------TATGTCTAAG---------------------------------------------------------------------------------------------------------------------------------AAAATAACAAAACAG----------------------------------------CATTTAAAAAATAATTT------------------------------------------------------------------------------------------T--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGATAGTCGGG-G----AACTCGA-----..............................................................................................................................................................................................................................................................................................................................................................23200.0510010
...T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGATAGTCGGG-G----AACTCGA-----C.............................................................................................................................................................................................................................................................................................................................................................24200.0511000
droYak3
AAACCGCCA---------------------------------------------------------------------------AAAACTGTCAGAAGATCTCCTTCGCA--------------------------------------------------------------------------------------------------------CTATCACTAGCTGAGTAACGGGT-------ATCAGATAGTCGGG-G----AACTCGA-----CTATAGCGTTCTCTCTTGTTT------TTTTT---TAAT-------TTTGTTTATTTCCATA--------TATA------------------------------------GTTTTATTTCC-----ATTTAATTTACAC-AT-----------------------------------------------TTTGCAGTT---------------------------------------------------------TC---------------------------------------------TGGG-----------GACC-------------------------AA--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................GT-------ATCAGATAGTCGGG-G----A.........................................................................................................................................................................................................................................................................................................................................................................18200.15330000000000
......................................................................................................................................................................................................................................AACGGGT-------ATCAGATAGTCGGG-G----AACT......................................................................................................................................................................................................................................................................................................................................................................26200.10200200000000
...........................................................................................................GCA--------------------------------------------------------------------------------------------------------CTATCACTAGCTGAGTAACGGG......................................................................................................................................................................................................................................................................................................................................................................................................25140.07101000000000
..........................................................................................................CGCA--------------------------------------------------------------------------------------------------------CTATCACTAGCTGAGTAACGG.......................................................................................................................................................................................................................................................................................................................................................................................................25170.06101000000000
...........................................................................................................................................................................................................................................................................TCGA-----CTATAGCGTTCTCTCTTGTTT------TT.................................................................................................................................................................................................................................................................................................................................27200.05101000000000
droEre2
GTATGTATGTGCGTATG-TAT----GTATGTA-----------------T-GTATG--TAT-GT-----ATG-------CATGTACGTATGT-------------ACGTATGT-------------------ATGTGTTA--------------------------CT----------------------------------------------------TGCACAAAGTAGT-----AAAAATATCTGATATCTGAT-A----TATATGA-----CTATAGCATTCTATCTTCTTT------TTGTC--------------TTTTTGCTCTGCGC---------------------ATTTCCGATTCTGTGTACGCTAATAATAAATATTG--CAAATATT--------------------------------------------------------------------------TATTACAGAAAA--------------------------------------TG-C------------------TTTAATTACATTTG------------------------------------------------------------CA--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................T----GTATGTA-----------------T-GTATG--TAT-GT-----ATG-------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530003000
..................................................................................GTACGTATGT-------------ACGTATGT-------------------ATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.1311000000

Generated: 05/18/2015 at 02:07 AM