ID:

dmo_2176

Coordinate:

scaffold_6540:33942803-33942864 -

Confidence:

confident

Class:

Mirtron

Genomic Locale:

intron

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.2 -13.7 -13.5

Flybase annnotation

intron [Dmoj\GI21936-in]; CDS [Dmoj\GI21936-cds]; CDS [Dmoj\GI21936-cds]

No Repeatable elements found

Sense Strand Reads

TGGACTGTGAACTGAAGCTGTTGCCCATACACTTTCTTACACAATCGGAAGTGAGTGCTAATCAACAGAAGATAAAATCTATATGAAAGATTTCACTGTTGTTCGCTTACAGGTGGGCAATGAGGAAGCGATGATGCGCCAATGGTTGGATGTGTGTGTCAC

**************************************************(((((((.....((((((..((...(((((.......))))))).))))))..)))))))..**************************************************
Read size # Mismatch Hit Count Total Norm Total M060

embryo

M046

female body

V056

head

V049

head

V041

embryo

V110

male body
..........................................................................................TTTCACTGTTGTTCGCTTACAG.................................................. 22 0 1 2098.00 2098 1771 222 24 19 59 3
..........................................................................................TTTCACTGTTGTTCGCTTACA................................................... 21 0 1 1173.00 1173 259 574 140 106 57 37
..........................................................................................TTTCACTGTTGTTCGCTTAC.................................................... 20 0 1 1003.00 1003 140 469 152 122 13 107
..........................................................................................TGTCACTGTTGTTCGCTTACAG.................................................. 22 1 1 263.00 263 263 0 0 0 0 0
...........................................................................................TTCACTGTTGTTCGCTTACAG.................................................. 21 0 1 137.00 137 93 39 0 0 5 0
..........................................................................................TTTCACTGTTGTTCGCTTACAGT................................................. 23 1 1 137.00 137 99 16 3 1 18 0
...........................................................................................TTCACTGTTGTTCGCTTACA................................................... 20 0 1 111.00 111 10 73 8 6 3 11
..........................................................................................TTTCACTGTTGTTCGCTTACAGA................................................. 23 1 1 78.00 78 57 14 3 0 4 0
...........................................................................................TTCACTGTTGTTCGCTTACAGT................................................. 22 1 1 69.00 69 52 4 1 2 10 0
..........................................................................................TTTCACTGTTGTTCGCTTA..................................................... 19 0 1 65.00 65 1 36 12 12 1 3
..........................................................................................TTTTACTGTTGTTCGCTTACAG.................................................. 22 1 1 64.00 64 64 0 0 0 0 0
.........................................................................................CTTTCACTGTTGTTCGCTTACAG.................................................. 23 1 1 56.00 56 55 1 0 0 0 0
...........................................................................................TTCACTGTTGTTCGCTTAC.................................................... 19 0 1 42.00 42 1 33 3 2 0 3
..........................................................................................TGTCACTGTTGTTCGCTTACA................................................... 21 1 1 42.00 42 42 0 0 0 0 0
..........................................................................................TGTTACTGTTGTTCGCTTACAG.................................................. 22 2 1 42.00 42 42 0 0 0 0 0
..........................................................................................TTCCACTGTTGTTCGCTTACAG.................................................. 22 1 1 41.00 41 41 0 0 0 0 0
..................................................GTGAGTGCTAATCAACAGAAGATAAAATC................................................................................... 29 0 1 38.00 38 37 0 0 0 0 1
..........................................................................................TTTCACTGTTGTTCGCTTACAGC................................................. 23 1 1 37.00 37 35 2 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTACAC.................................................. 22 1 1 35.00 35 35 0 0 0 0 0
...........................................................................................TTCACTGTTGTTCGCTTACAGA................................................. 22 1 1 24.00 24 15 8 0 0 1 0
...........................................................................................TTCACTGTTGTTCGCTTACAGC................................................. 22 1 1 23.00 23 23 0 0 0 0 0
..........................................................................................TGTCACTGTTGTTCGCTTAC.................................................... 20 1 1 14.00 14 14 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTACT................................................... 21 1 1 12.00 12 4 3 2 2 1 0
..........................................................................................TTTCACTGTTGTTCTCTTAC.................................................... 20 1 1 11.00 11 0 1 2 8 0 0
..........................................................................................TTTCACTGTTGTTCGCTTACAA.................................................. 22 1 1 11.00 11 2 6 0 0 3 0
...........................................................................................TGCACTGTTGTTCGCTTACAG.................................................. 21 1 1 11.00 11 11 0 0 0 0 0
..................................................GGGAGTGCTAATCAACAGAAGATAAAATC................................................................................... 29 1 1 11.00 11 11 0 0 0 0 0
..........................................................................................TGTCACTGTTGTTCGCTTACAC.................................................. 22 2 1 10.00 10 10 0 0 0 0 0
..........................................................................................TGCCACTGTTGTTCGCTTACAG.................................................. 22 2 1 10.00 10 10 0 0 0 0 0
..........................................................................................TGTCACTGTTGTTCGCTTACAGT................................................. 23 2 1 10.00 10 10 0 0 0 0 0
..........................................................................................TTTCACTTTTGTTCGCTTACAG.................................................. 22 1 1 9.00 9 8 0 0 0 1 0
............................................................................................TCACTGTTGTTCGCTTACAG.................................................. 20 0 1 9.00 9 4 4 0 0 1 0
..........................................................................................CTTCACTGTTGTTCGCTTACAG.................................................. 22 1 1 8.00 8 8 0 0 0 0 0
...........................................................................................TTAACTGTTGTTCGCTTACAG.................................................. 21 1 1 8.00 8 8 0 0 0 0 0
.........................................................................................CGTTCACTGTTGTTCGCTTACAG.................................................. 23 2 1 8.00 8 8 0 0 0 0 0
..........................................................................................GTTCACTGTTGTTCGCTTACAG.................................................. 22 1 1 7.00 7 7 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTACC................................................... 21 1 1 7.00 7 0 1 2 4 0 0
..........................................................................................TTTTACTGTTGTTCGCTTACAGT................................................. 23 2 1 7.00 7 7 0 0 0 0 0
..........................................................................................TATCACTGTTGTTCGCTTACAG.................................................. 22 1 1 7.00 7 6 0 1 0 0 0
..........................................................................................TTTTACTGTTGTTCGCTTACA................................................... 21 1 1 7.00 7 7 0 0 0 0 0
........................................................................................TCTTTCACTGTTGTTCGCTTACAG.................................................. 24 2 1 6.00 6 6 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTAA.................................................... 20 1 1 6.00 6 2 4 0 0 0 0
..........................................................................................TTTCACTTTTGTTCGCTTACA................................................... 21 1 1 6.00 6 5 1 0 0 0 0
..........................................................................................TGTCACTGTTGTTCGCTTACAGA................................................. 23 2 1 6.00 6 6 0 0 0 0 0
..........................................................................................TCTCACTGTTGTTCGCTTACAG.................................................. 22 1 1 6.00 6 6 0 0 0 0 0
..........................................................................................TCTCACTGTTGTTCGCTTACA................................................... 21 1 1 5.00 5 1 2 0 1 1 0
..........................................................................................TTTCACTGCTGTTCGCTTACAG.................................................. 22 1 1 5.00 5 5 0 0 0 0 0
..........................................................................................TTTCACTGTTGCTCGCTTACA................................................... 21 1 1 5.00 5 1 2 2 0 0 0
..........................................................................................TTTCTCTGTTGTTCGCTTACAG.................................................. 22 1 1 5.00 5 5 0 0 0 0 0
..........................................................................................TTTCACTGTTGCTCGCTTAC.................................................... 20 1 1 4.00 4 0 0 2 2 0 0
..........................................................................................TTCCACTGTTGTTCGCTTACA................................................... 21 1 1 4.00 4 4 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCTCTTACA................................................... 21 1 1 4.00 4 1 0 1 1 1 0
..........................................................................................TTTCACTGTTGTTCGTTTACA................................................... 21 1 1 4.00 4 4 0 0 0 0 0
..........................................................................................TTTCACTGTTTTTCGCTTACAG.................................................. 22 1 1 4.00 4 3 1 0 0 0 0
..........................................................................................TCTCACTGTTGTTCGCTTAC.................................................... 20 1 1 4.00 4 3 0 1 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTAAA................................................... 21 1 1 4.00 4 0 3 0 0 0 1
.......................................................................................ATCTTTCACTGTTGTTCGCTTACAG.................................................. 25 2 1 4.00 4 4 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTACCG.................................................. 22 1 1 4.00 4 1 0 0 2 1 0
..........................................................................................TTTCACCGTTGTTCGCTTACA................................................... 21 1 1 3.00 3 0 2 1 0 0 0
..........................................................................................CTTCACTGTTGTTCGCTTACA................................................... 21 1 1 3.00 3 3 0 0 0 0 0
..........................................................................................TTTCACTTTTGTTCGCTTACAGT................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..........................................................................................TTTCACTGTTGGTCGCTTAC.................................................... 20 1 1 3.00 3 0 3 0 0 0 0
..........................................................................................ATTCACTGTTGTTCGCTTACAG.................................................. 22 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................TGCACTGTTGTTCGCTTACAGT................................................. 22 2 1 3.00 3 3 0 0 0 0 0
..........................................................................................TTTCTCTGTTGTTCGCTTAC.................................................... 20 1 1 3.00 3 3 0 0 0 0 0
.........................................................................................CTTTCACTGTTGTTCGCTTACAGT................................................. 24 2 1 3.00 3 3 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTACAT.................................................. 22 1 1 3.00 3 1 0 1 1 0 0
..........................................................................................TTTCACTGTTGCTCGCTTACAG.................................................. 22 1 1 3.00 3 2 1 0 0 0 0
..........................................................................................TGTTACTGTTGTTCGCTTACA................................................... 21 2 1 3.00 3 3 0 0 0 0 0
..........................................................................................TTTCAGTGTTGTTCGCTTACAG.................................................. 22 1 1 3.00 3 3 0 0 0 0 0
...........................................................................................TTCTCTGTTGTTCGCTTACAG.................................................. 21 1 1 3.00 3 3 0 0 0 0 0
..........................................................................................TGCCACTGTTGTTCGCTTACA................................................... 21 2 1 3.00 3 3 0 0 0 0 0
..........................................................................................TTTTACTGTTGTTCGCTTACAGC................................................. 23 2 1 3.00 3 3 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTAGCTTAC.................................................... 20 1 1 3.00 3 0 1 0 2 0 0
...........................................................................................TGCACTGTTGTTCGCTTACAGC................................................. 22 2 1 3.00 3 3 0 0 0 0 0
..........................................................................................TTCCACTGTTGTTCGCTTAC.................................................... 20 1 1 3.00 3 2 0 0 1 0 0
..........................................................................................TGCCACTGTTGTTCGCTTACAGT................................................. 23 3 1 3.00 3 3 0 0 0 0 0
.........................................................................................CTTTCACTGTTGTTCGCTTACA................................................... 22 1 1 2.00 2 1 1 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTACAAA................................................. 23 2 1 2.00 2 1 1 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTTCAG.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGATTAC.................................................... 20 1 1 2.00 2 0 0 1 1 0 0
..........................................................................................TTTCACTGCTGTTCGCTTAC.................................................... 20 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................................GAAGTGGGCAATGAGGAAGC................................. 20 2 1 2.00 2 0 0 0 0 0 2
..........................................................................................TTTCACTGTTGTTCGCTTACG................................................... 21 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................TTCACTTTTGTTCGCTTACAGC................................................. 22 2 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTTCACTGTGGTTCGCTTACAG.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
.........................................................................................TGTTCACTGTTGTTCGCTTACAG.................................................. 23 2 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTTCACTGTCGTTCGCTTAC.................................................... 20 1 1 2.00 2 0 0 1 1 0 0
..........................................................................................TTTCACTGTTGTTCGCCTACAG.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTTGCTTACA................................................... 21 1 1 2.00 2 1 0 0 0 1 0
..........................................................................................GTTCACTGTTGTTCGCTTAC.................................................... 20 1 1 2.00 2 1 0 1 0 0 0
..........................................................................................TTTCACTGTTGTTCCCTTACA................................................... 21 1 1 2.00 2 1 1 0 0 0 0
............................................................................................TCACTGTTGTTCGCTTACAGA................................................. 21 1 1 2.00 2 0 2 0 0 0 0
..........................................................................................TTTTACTGTTGTTCGCTTACAGA................................................. 23 2 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTACAGG................................................. 23 0 1 2.00 2 2 0 0 0 0 0
..........................................................................................TGTCACTGTTGCTCGCTTACAG.................................................. 22 2 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTACACTGTTGTTCGCTTACA................................................... 21 1 1 2.00 2 0 1 0 1 0 0
..........................................................................................TTTCACTGTTGTTCGTTTACAG.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................TGTTACTGTTGTTCGCTTAC.................................................... 20 2 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTTCACTGTTATTCGCTTACA................................................... 21 1 1 2.00 2 1 0 0 1 0 0
..........................................................................................TTTCACTGTTGTTCGCTTATA................................................... 21 1 1 2.00 2 1 0 0 1 0 0
..........................................................................................TTTCACTGTTGTTCCCTTACAG.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTAT.................................................... 20 1 1 2.00 2 0 0 0 0 0 2
..........................................................................................TGTCACTGTCGTTCGCTTACAG.................................................. 22 2 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTT...................................................... 18 0 1 2.00 2 0 0 0 1 1 0
...........................................................................................TTCACTGTTGTTCGCTTACT................................................... 20 1 1 2.00 2 0 2 0 0 0 0
..........................................................................................TTTTACTGTTGTTCGCTTAC.................................................... 20 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TGCACTGTTGTTCGCTTACAGA................................................. 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGTTGTTCGCTTAC.................................................... 18 0 1 2.00 2 0 2 0 0 0 0
..........................................................................................TGTCACTGTTGTTCGCTTACAGC................................................. 23 2 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTTCGCTGTTGTTCGCTTACAG.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TTAACTGTTGTTCGCTTACAGT................................................. 22 2 1 2.00 2 2 0 0 0 0 0
..........................................................................................TATCACTGTTGTTCGCTTACA................................................... 21 1 1 2.00 2 1 0 1 0 0 0
..........................................................................................TTTCAATGTTGTTCGCTTACAG.................................................. 22 1 1 2.00 2 0 0 0 0 2 0
............................................................................................TGACTGTTGTTCGCTTACAGT................................................. 21 2 1 2.00 2 2 0 0 0 0 0
............................................................................................TCACTGTTGTTCGCTTACA................................................... 19 0 1 2.00 2 0 2 0 0 0 0
.........................................................................................CTCTCACTGTTGTTCGCTTACAG.................................................. 23 2 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTGCACTGTTGTTCGCTTAC.................................................... 20 1 1 2.00 2 0 0 1 1 0 0
..........................................................................................TTTCACTGTTGTTTGCTTACAG.................................................. 22 1 1 2.00 2 0 1 0 0 1 0
..........................................................................................TGTCACTGTGGTTCGCTTACA................................................... 21 2 1 1.00 1 0 0 0 1 0 0
.........................................................................................ATTTCACTGTTGTTCGCTTACAGT................................................. 24 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................CTTTCACTGTTGTTCGCTTAA.................................................... 21 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TTCACTGGTGTTCGCTTACAG.................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TGTCACTGTTGTTCGCTCACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................GTTCACTGTTGTTCGCTTACA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTTCACTGTTGTGCGCTTACA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TGTCACTGTTGTTCGCTTACACC................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTTACTGTTGTTCGCTTACAC.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................CTTTCACTGTTGTTCGCTTACAC.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTACGGT................................................. 23 2 1 1.00 1 0 0 0 0 1 0
...........................................................................................TTCACTGTTGTTCTCTTACAG.................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACCGTTGTTCGCTTACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................CACTGTTGTTCGCTTACAGC................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................GTTCACTGTTGATCGCTTACA................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTTCACTGTTATTCGCTTACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGCTGTCCGCTTAC.................................................... 20 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TTCACTTTTGTTCGCTTACAGT................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTACTT.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TTTACTGTTGTTCGCTTACAGA................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGGTCGCTTACAG.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................TATTACTGTTGTTCGCTTACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTACAGAT................................................ 24 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTCACA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................CTTCACTGTTGTTCGCTTACG................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTCTA................................................... 21 2 1 1.00 1 0 0 0 0 1 0
............................................................................................TCACTGTTGTTAGCTTACAG.................................................. 20 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................TGTCACTGTTGTTCGCTTATAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TGTCACTGCTGTTCGCTTACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGATTACA................................................... 21 1 1 1.00 1 0 0 1 0 0 0
.........................................................................................CTTTCACTGTTGTTCGCTTACAGA................................................. 24 2 1 1.00 1 0 1 0 0 0 0
.........................................................................................CTTTCACTGTTGTTCGCTTAC.................................................... 21 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................TTCCACTGTTGTTCGCTGACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCAGTGTTGTTCGCTTAC.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TTCACTGTTGTCCGCTTACA................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................ATTCACTGTTGTTCGCTTACAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGCTAGCTTAC.................................................... 20 2 1 1.00 1 0 0 0 0 1 0
..........................................................................................TTGCACTGTTGTTCGCTTACA................................................... 21 1 1 1.00 1 0 0 0 0 1 0
..........................................................................................TTTCATTGTTGTTCGCTTACA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TGTCACTGTTGCTCGCTTACAGT................................................. 23 3 1 1.00 1 1 0 0 0 0 0
...........................................................................................TGCTCTGTTGTTCGCTTACAG.................................................. 21 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................ATTCACTCTTGTTCGCTTACA................................................... 21 2 1 1.00 1 0 0 0 0 1 0
..........................................................................................TTTCACGGGTGTTCGCTTACA................................................... 21 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTACATC................................................. 23 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................TGTCACTTTTGTTCGCTTACA................................................... 21 2 2 1.00 2 2 0 0 0 0 0
..........................................................................................TGTCACTGTTCTTCGCTTACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTTCAGT................................................. 23 2 1 1.00 1 0 0 0 0 1 0
..........................................................................................TTTCACTGGTGGTCGCTTAC.................................................... 20 2 1 1.00 1 0 0 0 1 0 0
..........................................................................................TGTCACTGTTATTCGCTTACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGTTTAC.................................................... 20 1 1 1.00 1 0 0 0 1 0 0
..................................................GTCAGTGCTAATCAACAGAAGATAAAATC................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................CTTTCACTGTTGCTCGCTTACAG.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TTCACTGTTGGTCGCCTAC.................................................... 19 2 1 1.00 1 0 0 0 1 0 0
......................................................................................AAGATTTCACTGTTGTTCGCTTA..................................................... 23 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTACAGATA............................................... 25 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TGTCACTGTTGTTCGCTGACA................................................... 21 2 1 1.00 1 0 0 0 0 1 0
......................................................................................GATTTTTCACTGTTGTTCGCTTACAG.................................................. 26 3 1 1.00 1 1 0 0 0 0 0
........................................................................................CTCTTCACTGTTGTTCGCTTACAG.................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTCCACTGTTGTTTGCTTACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TTCATTGTTGTTCGCTTACAGT................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCCCTTAC.................................................... 20 1 1 1.00 1 0 0 0 1 0 0
.............................................................................................CACTGTTGTTCGCTTACAG.................................................. 19 0 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTGCTAATCAACAGAA............................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................TTCACTGTTGTTCTCTTACA................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................ATTTCACTGTTGTTCGCTTACA................................................... 22 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................TTCACTGTTGTTCGCTTACAA.................................................. 21 1 1 1.00 1 0 0 0 0 1 0
..........................................................................................CTTTACTGTTGTTCGCTTACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTAGTTCGCTTACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................CGTCACTGTTGTTCGCTTACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................AGCTTTCACTGTTGTTCGCTTACA................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTCCGCTTAC.................................................... 20 1 1 1.00 1 0 0 1 0 0 0
...........................................................................................TTCACTGCTGTTCGCTTACA................................................... 20 1 1 1.00 1 0 0 0 0 1 0
..................................................................................ATGAAAGATTTCACTGTTGTTCGCTTA..................................................... 27 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................TTCACTGTTGTCCGCTTACAGC................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGTTTACAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTTACTGTTGTTCGCTGACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TGTCACTGTTGTTCGTTTACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTTTTCGCTTACAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TTCACTGTTGTCCGCTTACAG.................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GGGAGTGCTAATCAACAGAAGAT......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................CTTCCACTGTTGTTCGCTTACAG.................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..................................................GGGTGTGCTAATCAACAGAAGATAAAATC................................................................................... 29 2 1 1.00 1 1 0 0 0 0 0
......................................................................................TATATTTCACTGTTGTTCGCTTACAG.................................................. 26 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTTCATTGTTGTTCGCTTACAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTTTCTTACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................CACTGTTGTTCGCTTACA................................................... 18 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTTCACTGTGTTTCGCTTACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTATTGTTCGCTTACAG.................................................. 22 1 1 1.00 1 0 0 0 0 1 0
..........................................................................................GTTCACTGTTGTTCGCTTACAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTTTTCGCTTAC.................................................... 20 1 2 1.00 2 0 1 1 0 0 0
..........................................................................................TTTCACTGTTGTTCGCCTACTG.................................................. 22 2 1 1.00 1 0 0 0 1 0 0
..........................................................................................TTTCACTGTTCTTCGCTTACA................................................... 21 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................TTTCGCTGTTGTTCGCTTAC.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCAATGTTGTTCGCTTAC.................................................... 20 1 1 1.00 1 0 0 1 0 0 0
.......................................................................................ATCTTTCACTGTTGTTCGCTTACA................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTAG.................................................... 20 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................TTTCACTGACGTTCGCTTACA................................................... 21 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTCC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................TGTTACTGTTGTTCGCTTACAGC................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACCGTTGTTCGTTTAC.................................................... 20 2 1 1.00 1 0 0 0 1 0 0
...........................................................................................TTCACTGTTGTTCGCTTA..................................................... 18 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTACGG.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTTCACTGTTATTCGCTTAC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................ATTTCACTGTTGTTCGCTTAC.................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACCGTTGTTCGCTTAC.................................................... 20 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................TATCACTGCTGTTCGCTTACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGCTAATAAACAGAAGATAAAATC................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0
......................................................................................ATCCTTTCACTGTTGTTCGCTTACAG.................................................. 26 3 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGATAATCAACAGAAGATAAAATC................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGCTAATCAACAGAAGATAA....................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................ATAACTTTCACTGTTGTTCGCTTACA................................................... 26 3 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTTCACTATTGTTCGCTTAC.................................................... 20 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................CTCACTGTTGTTCGCTTACA................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTGCTAATCAACAGAAG........................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0
..........................................................................................TTTCACTGTGGTTCGCTTACA................................................... 21 1 1 1.00 1 0 0 1 0 0 0
................................TTTCTTACACAATCGGAAGTGGGC.......................................................................................................... 24 2 1 1.00 1 0 0 0 0 0 1
..........................................................................................TTTCACTCTTGTTCGCTTACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TTCTCTGTTGTTCGCTTACA................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TTCACTGTTGTTCGCTTACTGT................................................. 22 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTATG................................................... 21 2 1 1.00 1 0 0 0 0 1 0
..........................................................................................TTTCACTGTTGTTCGCTTACAGAA................................................ 24 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................TTCACTGTTGTTCGCTTACAC.................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTCCACTGTTGTTCGCTTACAC.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTGAGTGCTAATCAACAGAAGATAAA...................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................ATTTCACTGTTGTTCGCTTACAG.................................................. 23 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................TGTCACTGTTTTTCGCTTACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GGCAGTGCTAATCAACAGAAGATAAAATC................................................................................... 29 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGATCGCTTAC.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTTCCCTGTTGTTCGCTTAC.................................................... 20 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................TTCACTGTTGTTCGCTTATAG.................................................. 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TTTCTGTTGTTCGCTTACAG.................................................. 20 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTCCACTGTTGTTCGCTTACAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCTCTTACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
........................................................................................TGTTTCACTGTTGTTCGCTTACA................................................... 23 2 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTGCTAATCAACAGAAGATA........................................................................................ 24 0 1 1.00 1 0 0 0 0 1 0
...........................................................................................CTCACTGTTGTTCGCTTACAGT................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TGTCACTGTTGTTTGCTTACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
........................................................................................TCTTTCACTGTTGCTCGCTTACAG.................................................. 24 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................TGTCACTGTTCTTCGCTTACA................................................... 21 2 1 1.00 1 0 0 0 1 0 0
..........................................................................................TTTCACTGTTGTTCGCTTACAGAAA............................................... 25 3 1 1.00 1 1 0 0 0 0 0
.......................................................................................TCATTTCACTGTTGTTCGCTTACAG.................................................. 25 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCCCTTACAGA................................................. 23 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTACCA................................................... 21 2 1 1.00 1 0 0 1 0 0 0
..................................................GTGAGTGCTAATCAACAGAAAATAAAATC................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................TTCACTGTTGTTCGCTTACCT.................................................. 21 2 1 1.00 1 1 0 0 0 0 0
........................................................................................TGTTTCACTGTTGTTCGCTTACAG.................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................ACTGTTGTTCGCTTCCAG.................................................. 18 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTACAGTT................................................ 24 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TCATTGTTGTTCGCTTACAGT................................................. 21 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTTCAGTGTTGTTCGCTTACAGT................................................. 23 2 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGTTGTTCGCTTACAA.................................................. 20 1 1 1.00 1 0 1 0 0 0 0
..................................................GTGAGTGCTAATCAACAGAAGATAAAA..................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGATTAA.................................................... 20 2 2 0.50 1 0 0 0 1 0 0
..........................................................................................TTTTACTGTTGTTCGCTTATA................................................... 21 2 2 0.50 1 1 0 0 0 0 0
..........................................................................................TGTCACTTTTGTTCGCTTACAG.................................................. 22 2 2 0.50 1 1 0 0 0 0 0
..........................................................................................TGTCACTGTTGTTCTCTTACA................................................... 21 2 2 0.50 1 1 0 0 0 0 0
..........................................................................................TGTCACTGTGGTTCGCTTACAT.................................................. 22 3 2 0.50 1 0 0 0 1 0 0
..........................................................................................TGTCACTGTTGTTCGCTT...................................................... 18 1 2 0.50 1 1 0 0 0 0 0
..........................................................................................TGTTACTGTTGTTCGCTTACAGT................................................. 23 3 2 0.50 1 1 0 0 0 0 0
..GATTGTGAACTGAAGCTGTT............................................................................................................................................ 20 1 2 0.50 1 0 0 0 0 0 1
..........................................................................................TTTCACTGGTGGTCGATTACA................................................... 21 3 2 0.50 1 0 0 1 0 0 0
.........................................................................................CTCTCACTGTTGTTCGCTTACA................................................... 22 2 2 0.50 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGTTTACC................................................... 21 2 2 0.50 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTCCC................................................... 21 2 2 0.50 1 0 0 0 1 0 0
..........................................................................................TTTCACTGTTGTTCAATTACA................................................... 21 2 2 0.50 1 0 0 0 1 0 0
..........................................................................................TTTCAGTGTTGTTCGCTTACT................................................... 21 2 2 0.50 1 0 0 1 0 0 0
..........................................................................................TGTCACTGTTGTTCGCTTTCAG.................................................. 22 2 2 0.50 1 1 0 0 0 0 0
..........................................................................................TTTCACTTTTGTTAGCTTACA................................................... 21 2 2 0.50 1 0 0 0 1 0 0
..........................................................................................TTTCACTGTTGCTCGCTTACT................................................... 21 2 2 0.50 1 0 0 1 0 0 0
TGGACTGTGAACTGAAACTGG............................................................................................................................................. 21 2 2 0.50 1 0 0 0 1 0 0
..GACTGTGAACTGAAACTGTT............................................................................................................................................ 20 1 2 0.50 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCGCTTT..................................................... 19 1 2 0.50 1 0 0 0 0 0 1
..........................................................................................TTTCATTGTTGTTCGCTTACC................................................... 21 2 2 0.50 1 0 0 1 0 0 0
..........................................................................................TTTTTCTGTTGTTCGCTTACA................................................... 21 2 3 0.33 1 1 0 0 0 0 0
..........................................................................................TGCCACTGTTGTTCGCTTACAGA................................................. 23 3 3 0.33 1 1 0 0 0 0 0
..........................................................................................TTTCACTGTTGTTCTCTTACAA.................................................. 22 2 3 0.33 1 0 1 0 0 0 0
...........................................................................................TGCACTTTTGTTCGCTTACAGC................................................. 22 3 3 0.33 1 1 0 0 0 0 0
..........................................................................................TTTCACTTTTGTTCGTTTACA................................................... 21 2 3 0.33 1 1 0 0 0 0 0
..........................................................................................CTTCACTGTTGTTGGCTTACA................................................... 21 2 3 0.33 1 0 0 0 0 0 1
..........................................................................................TTTCACTGTTGTTCGCTTTA.................................................... 20 2 3 0.33 1 0 0 0 1 0 0
..........................................................................................TTTCACTGTTATTCTCTTAC.................................................... 20 2 3 0.33 1 0 0 0 1 0 0
..........................................................................................TTTCACTGTTGTTCGCCTGC.................................................... 20 2 4 0.25 1 0 0 1 0 0 0

Anti-sense strand reads

ACCTGACACTTGACTTCGACAACGGGTATGTGAAAGAATGTGTTAGCCTTCACTCACGATTAGTTGTCTTCTATTTTAGATATACTTTCTAAAGTGACAACAAGCGAATGTCCACCCGTTACTCCTTCGCTACTACGCGGTTACCAACCTACACACACAGTG

**************************************************(((((((.....((((((..((...(((((.......))))))).))))))..)))))))..**************************************************
Read size # Mismatch Hit Count Total Norm Total M046

female body

...................................................ACTCACGTTTTGTTGTCT............................................................................................. 18 2 18 0.11 2 2
............................................................TAGATGACTTCTATTCTAGA.................................................................................. 20 3 14 0.07 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6540:33942753-33942914 - dmo_2176 confident TGGACTGTGAACTGAAGCTGTTGCCCATACACTTTCTTACACAATCGGAAGTGAGTGC--TAATCA------------------------------------------------------------ACAGAAGATAAAATCTATA---T-------------------------------G------------------------------------AA---AGATTTCACTGTTGT--TCG------CTTACAGGTGGGCAATGAGGAAGCGATGATGCGCCAATGGTTGGATGTGTGTGTCAC
droVir3 scaffold_12822:1328550-1328707 - dvi_2469 TGGACTGCGAGCTGAAGCTGCTGCCCATACACTTTCTAACACAAACAGAGGTGAGTTT--GCG---------------------------------------------------------------GCCAA----ATTCGAA----------TTTCACT--TGTA----------------------------------------------------CTTGACCATC------TTTT--CTG------ATTGCAGGTGGGGAATGAGGAGACCATGATGCGTCAATGGCTGGACGTTTGTGTCAC
droGri2 scaffold_15074:2546878-2547041 + TGGACTGCGAGCTTAAACTCCTACCCATACACTTTTTATCGCAGTCGGAGGTCAGTTC--GAA---------------------------------------------------------------CAACA----ATTCCCAATT---CAAA-------AT--------------------C-----------------------------------GAA-CTAACTAAGTATTTTACCTCA------CTTCCAGGTTGGCAATGAGGAGACCATGATGCGTCAATGGTTGGACGTGTGTGTCAC
droWil2 scf2_1100000004902:10787357-10787412 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGGTGGGCAACGAGGAGTCGATAATGCGTCAATGGCTAGACGTTTGTGTAAC
dp5 2:5533852-5534010 + TGGACTGCGAGCTCAAGCTCTTGCCCATACATTTTCTCACACAGTCGGAGGTGAGAAT--GCA---------------------------------------------------------------ACTGA----AAGATCTGTA---A-------------------------------A------------------------------------GAA-GAAACTGATTCGTTAATTTCT------TTGACAGGTTGGCAATGAGGAGTCAATGATGCGCCAATGGCTGGATGTTTGCGTAAC
droPer2 scaffold_19:1250580-1250738 + TGGACTGCGAGCTCAAGCTCTTGCCCATACATTTTCTCACACAGTCGGAGGTGAGAAT--GCA---------------------------------------------------------------ACTGA----AAGATCTGTA---A-------------------------------A------------------------------------GAA-GAAACTGATTCGTTAATTTCT------TTGACAGGTGGGCAATGAGGAGTCAATGATGCGCCAATGGCTGGATGTTTGCGTAAC
droAna3 scaffold_13250:62462-62632 - TGGACTGCGAGCTTAAACTCTTGCCAATACATTTCCTTACACAATCTGAGGTGAGATT--TCT---------------------------------------------------------------ATCCA----TATA--TG------------------TGTACTTAAATAGAGGTGAA------------------------------------CTA-GAAAATAATATGATTA--TGT------TATGCAGGTGGGCAATGAAGAATCTATGATGCGTCAATGGCTGGACGTGTGTGTAAC
droBip1 scf7180000396413:618022-618182 - TGGACTGCGAGCTGAAACTCTTGCCAATACATTTCCTCACACAATCTGAGGTGAGATA--TTAATCATGTGCAGT--------------------------------------------------------AGTTT-----------------------G---------------------CAAATT-AA---------------------------CTAGAAAATA------TTTA--TAA------TGTACAGGTTGGCAATGAAGAATCTATGATGCGCCAGTGGCTGGACGTGTGTGTAAC
droKik1 scf7180000302461:159822-159983 + TGGATTGTGAGCTGAAACTGTTGCCTATCCATTTCCTCACCCAGTCCGAGGTAAGGGA--ATAATAATTTGAAAA--------------------------------------------------------ATATA-----------------------A---------------------CGTTTT-TT-----------------------CTAC---GAGAATT------CTAT--CTT------TTTGCAGGTGGGTAACGAAGAGACCATGATGCGCCAGTGGCTTGACGTGTGCGTTAC
droFic1 scf7180000454104:1315736-1315959 + TGGACTGCGAGCTGAAACTATTACCCATACACTTTCTCACCCAGTCCGAGGTGAGAGA--TAATGA-----AAATATATTGCATTTTCTTTGTGGGAAATTATAAAGTTCTAATTTGATATTCGTATTTAA----AATACATTTG---GAGT-------ACGGTT---------------A------------------------------------GCT-AATTAAATTTAATGTC--TAC------TTTGCAGGTGGGCAACGAGGAGTCGATGATGCGCCAATGGCTCGACGTGTGCGTGAC
droEle1 scf7180000491047:110351-110415 + TGGACTGTGAGCTGAAGCTTTTGCCCATACATTTCCTCACACAGTCCGAGGTGAGAGA--TTATTA---------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777865:308496-308559 - TTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--TTC------CTTGCAGGTGGGCAACGAGGAGTCGATGATGCGCCAGTGGCTGGATGTGTGCGTAAC
droBia1 scf7180000302402:3011974-3012159 - TGGACTGCGAGCTTAAGCTGTTGCCAATACATTTCCTCACTCAGTCCGAGGTGAGATT--TTGTAGA-----------------------------------------------------------TACAT----ATATCTTGCA---GAT-----------------------------------TTTACTAAGGTATAATGCTATGTTTACTAAT----------TA----TTGT--TTGCTATATATTGCAGGTGGGCAACGAGGAGTCGATGATGCGCCAATGGCTGGACGTGTGCGTGAC
droTak1 scf7180000415653:574311-574475 - TGGACTGCGAGCTGAAACTATTGCCCATACATTTCCTCACACAGTCCGAGGTGAGAGA--TTAGAG---------------------------------------------------------------AT----ATTATTGCTGTATCATA-------AC--------------------T--CTT-TT-----------------------AAAC----------TATTATTTGC--TAC------CTTTTAGGTGGGCAACGAGGAGTCAATGATGCGCCAATGGCTGGACGTGTGCGTAAC
droEug1 scf7180000407136:160743-160898 + TGGACTGCGAGCTGAAATTATTACCCATACATTTCCTCACACAGTCTGAGGTAAGTGA--TC-----------------------------------------------------------------TTAA----AGATGAT----------TTACTAT--TATT---------------A------------------------------------ATA-AAAATAAAATC--------GC------TTTGCAGGTAGGCAACGAGGAATCAATGATGCGCCAGTGGCTTGATGTGTGCGTAAC
dm3 chr3R:5532713-5532878 - TGGACTGCGAGCTGAAACTTTTGCCCATACATTTCCTTACACAGTCGGAGGTGAGAGC--TTA---------------------------------------------------------------TTCAA----ATATCCTGTA---GAAC-------ATTGTG---------------A------------------------------------GCT-TAGACATTTCCGTTCC--TTG------CCTGCAGGTTGGCAACGAGGAGTCAATGATGCGTCAATGGCTGGACGTGTGCGTAAC
droSim2 3r:15501523-15501688 + dsi_9275 TGGACTGCGAGCTGAAACTTTTGCCCATTCATTTCCTTACACAGTCGGAGGTGAGAGC--TTA---------------------------------------------------------------TTCAA----ATAGCCTGTG---GAAC-------ATTGTG---------------A------------------------------------GCT-TAGACATTTCCGTTCC--TTG------CTTGCAGGTTGGCAACGAGGAGTCGATGATGCGTCAATGGCTGGACGTGTGCGTAAC
droSec2 scaffold_0:16372165-16372330 + TGGACTGCGAGCTGAAACTTTTGCCCATACATTTCCTTACACAGTCGGAGGTGAGAGC--TTA---------------------------------------------------------------TTCAA----ATATCCTGTG---GAAC-------ATTGGG---------------A------------------------------------GCT-TAGACATTTCCGTTCC--TTG------CTTGCAGGTTGGCAACGAGGAGTCGATGATGCGGCAATGGCTGGACGTGTGCGTAAC
droYak3 3R:9579202-9579367 - TGGACTGCGAGCTGAAACTTTTGCCCATACATTTCCTTACACAATCGGAGGTGAGAGT--TTA---------------------------------------------------------------TTTTA----ATATCATATG---GAAC-------ATTGTG---------------A------------------------------------GCA-GAGACATTTCCGTTCC--CTA------CTTGCAGGTTGGCAACGAGGAGTCGATGATGCGTCAATGGCTGGACGTGTGCGTGAC
droEre2 scaffold_4770:16072318-16072485 + TGGACTGCGAGCTGAAACTTTTGCCCATACATTTCCTTACACAATCGGAGGTGAGAGCCCTTC---------------------------------------------------------------CTTAA----ATATAATTTG---GATT-------ACTGTA---------------A------------------------------------GCA-GAGATATATCCATTCC--TTA------CTTGCAGGTTGGCAACGAGGAGTCGATGATGCGTCAATGGCTGGACGTGTGCGTGAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TGGACTGTGAACTGAAGCTGTTGCCCATACACTTTCTTACACAATCGGAAGTGAGTGC--TAATCA------------------------------------------------------------ACAGAAGATAAAATCTATA---T-------------------------------G------------------------------------AA---AGATTTCACTGTTGT--TCG------CTTACAGGTGGGCAATGAGGAAGCGATGATGCGCCAATGGTTGGATGTGTGTGTCACSizeHit CountTotal NormTotalM046

Female-body
V041

Embryo
V049

Head
V056

Head
M060

Embryo
V110

Male-body
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTACAG..................................................2212098.00209822259192417713
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTACA...................................................2111173.0011735745710614025937
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTAC....................................................2011003.00100346913122152140107
..................................................................................................................................................................................................................................TTCACTGTTGT--TCG------CTTACAG..................................................211137.0013739500930
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTACAGT.................................................231137.00137161813990
..................................................................................................................................................................................................................................TTCACTGTTGT--TCG------CTTACA...................................................201111.00111733681011
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTACAGA.................................................23178.007814403570
..................................................................................................................................................................................................................................TTCACTGTTGT--TCG------CTTACAGT.................................................22169.006941021520
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTA.....................................................19165.0065361121213
..................................................................................................................................................................................................................................TTCACTGTTGT--TCG------CTTAC....................................................19142.00423302313
..................................................GTGAGTGC--TAATCA------------------------------------------------------------ACAGAAGATAAAATC....................................................................................................................................................................29138.00380000371
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTACAGC.................................................23137.00372000350
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTACAC..................................................22135.00350000350
..................................................................................................................................................................................................................................TTCACTGTTGT--TCG------CTTACAGA.................................................22124.00248100150
..................................................................................................................................................................................................................................TTCACTGTTGT--TCG------CTTACAGC.................................................22123.00230000230
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTACT...................................................21112.0012312240
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTACAA..................................................22111.0011630020
...................................................................................................................................................................................................................................TCACTGTTGT--TCG------CTTACAG..................................................2019.009410040
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTACC...................................................2117.007104200
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTAA....................................................2016.006400020
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTACAT..................................................2213.003001110
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTACAAA.................................................2312.002100010
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTACG...................................................2112.002200000
...................................................................................................................................................................................................................................TCACTGTTGT--TCG------CTTACAGA.................................................2112.002200000
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTACAGG.................................................2312.002000020
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTAT....................................................2012.002000002
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTT......................................................1812.002011000
..................................................................................................................................................................................................................................TTCACTGTTGT--TCG------CTTACT...................................................2012.002200000
...................................................................................................................................................................................................................................TCACTGTTGT--TCG------CTTAC....................................................1812.002200000
...................................................................................................................................................................................................................................TCACTGTTGT--TCG------CTTACA...................................................1912.002200000
................................................................................................................................................................................................................................ATTTCACTGTTGT--TCG------CTTACAGT.................................................2411.001000010
....................................................................................................................................................................................................................................CACTGTTGT--TCG------CTTACAGC.................................................2011.001000010
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTACTT..................................................2211.001000010
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTACATC.................................................2311.001100000
..........................................................................................................................................................................................................................A---AGATTTCACTGTTGT--TCG------CTTA.....................................................2311.001100000
....................................................................................................................................................................................................................................CACTGTTGT--TCG------CTTACAG..................................................1911.001100000
..................................................GTGAGTGC--TAATCA------------------------------------------------------------ACAGAA.............................................................................................................................................................................2011.001100000
................................................................................................................................................................................................................................ATTTCACTGTTGT--TCG------CTTACA...................................................2211.001100000
..................................................................................................................................................................................................................................TTCACTGTTGT--TCG------CTTACAA..................................................2111.001010000
................................................................................................................................................A---T-------------------------------G------------------------------------AA---AGATTTCACTGTTGT--TCG------CTTA.....................................................2711.001100000
....................................................................................................................................................................................................................................CACTGTTGT--TCG------CTTACA...................................................1811.001100000
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTAG....................................................2011.001000100
..................................................................................................................................................................................................................................TTCACTGTTGT--TCG------CTTA.....................................................1811.001100000
................................................................................................................................................................................................................................ATTTCACTGTTGT--TCG------CTTAC....................................................2111.001000010
..................................................GTGAGTGC--TAATCA------------------------------------------------------------ACAGAAGATAA........................................................................................................................................................................2511.001000010
..................................................GTGAGTGC--TAATCA------------------------------------------------------------ACAGAAG............................................................................................................................................................................2111.001010000
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTATG...................................................2111.001010000
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTACAGAA................................................2411.001100000
..................................................................................................................................................................................................................................TTCACTGTTGT--TCG------CTTACAC..................................................2111.001000010
..................................................GTGAGTGC--TAATCA------------------------------------------------------------ACAGAAGATAAA.......................................................................................................................................................................2611.001100000
................................................................................................................................................................................................................................ATTTCACTGTTGT--TCG------CTTACAG..................................................2311.001000010
..................................................GTGAGTGC--TAATCA------------------------------------------------------------ACAGAAGATA.........................................................................................................................................................................2411.001010000
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTACAGAAA...............................................2511.001000010
..................................................................................................................................................................................................................................TTCACTGTTGT--TCG------CTTACCT..................................................2111.001000010
...................................................................................................................................................................................................................................TCACTGTTGT--TCG------CTTACAA..................................................2011.001100000
..................................................GTGAGTGC--TAATCA------------------------------------------------------------ACAGAAGATAAAA......................................................................................................................................................................2711.001100000
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTT.....................................................1920.501000001
.................................................................................................................................................................................................................................TTTCACTGTTGT--TCG------CTTTA....................................................2030.331001000
droVir3
TGGACTGCGAGCTGAAGCTGCTGCCCATACACTTTCTAACACAAACAGAGGTGAGTTT--GCG---------------------------------------------------------------GCCAA----ATTCGAA----------TTTCACT--TGTA----------------------------------------------------CTTGACCATC------TTTT--CTG------ATTGCAGGTGGGGAATGAGGAGACCATGATGCGTCAATGGCTGGACGTTTGTGTCACSizeHit CountTotal NormTotalM027

Male-body
M028

Head
M047

Female-body
M061

Embryo
SRR060654

Ovary
SRR060655

Testis
SRR060656

Ovary
SRR060657

Testis
SRR060658

Ovary
SRR060659

Testis
SRR060660

Ovary
SRR060661

Embryo
SRR060662

Embryo
SRR060663

Embryo
SRR060664

Male-body
SRR060665

Female-body
SRR060666

Male-body
SRR060667

Female-body
SRR060668

Male-body
SRR060669

Female-body
SRR060670

Testis
SRR060671

Male-body
SRR060672

Female-body
SRR060673

Ovary
SRR060674

Ovary
SRR060675

Ovary
SRR060676

Ovary
SRR060677

Ovary
SRR060678

Testis
SRR060679

Testis
SRR060680

Testis
SRR060681

Testis
SRR060682

Embryo
SRR060683

Testis
SRR060684

Embryo
SRR060685

Embryo
SRR060686

Embryo
SRR060687

Embryo
SRR060688

Ovary
SRR060689

Testis
SRR1106712

embryo_0-2h
SRR1106713

embryo_0-2h
SRR1106714

embryo_2-4h
SRR1106715

embryo_4-6h
SRR1106716

embryo_4-6h
SRR1106717

embryo_6-8h
SRR1106718

embryo_6-8h
SRR1106719

embryo_8-10h
SRR1106720

embryo_8-10h
SRR1106721

embryo_10-12h
SRR1106722

embryo_10-12h
SRR1106723

embryo_12-14h
SRR1106724

embryo_12-14h
SRR1106725

embryo_14-16h
SRR1106726

embryo_14-16h
SRR1106727

larvae
SRR1106728

larvae
SRR1106729

mixed whole adult body
SRR1106730

embryo_16-30h
V047

Embryo
V053

Head
V116

Male-body
GSM1528803

follicle cells
SRR2096013

Ovary_Strain_9_oxidized
SRR2096014

Ovary_Strain_160_oxidized
SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers
SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers
SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers
SRR2096055

Ovary_Min_43
SRR2096056

Ovary_Min_46
SRR2096057

Ovary_Min_50
SRR2096058

Ovary_Min_98
SRR2096059

Ovary_Min_164
SRR2096060

Ovary_Min_193
SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers
SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers
SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers
SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers
SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..GACTGCGAGCTGAAGCTGCTG..........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
.......CGAGCTGAAGCTGCTGCCCA......................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000100000000000000000000000000000000000000000000
.........................CATACACTTTCTAACACAAAC...................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000100000000000000
.GGACTGCGAGCTGAAGCTGC............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001
..............................................................................................................................................................................................................................................................GGTGGGGAATGAGGAGACCATGATGC.........................2611.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
droGri2
TGGACTGCGAGCTTAAACTCCTACCCATACACTTTTTATCGCAGTCGGAGGTCAGTTC--GAA---------------------------------------------------------------CAACA----ATTCCCAATT---CAAA-------AT--------------------C-----------------------------------GAA-CTAACTAAGTATTTTACCTCA------CTTCCAGGTTGGCAATGAGGAGACCATGATGCGTCAATGGTTGGACGTGTGTGTCACSizeHit CountTotal NormTotalM041

Female-body
V109

Male-body
No Reads
droWil2
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGGTGGGCAACGAGGAGTCGATAATGCGTCAATGGCTAGACGTTTGTGTAACSizeHit CountTotal NormTotalM020

Head
M045

Female-body
V117

Male-body
V118

Embryo
V119

Head
...............................................................................................................................................................................................................................................................................CGATAATGCGTCAATGGCTAGAC...........2311.00100010
...............................................................................................................................................................................................................................................................GTGGGCAACGAGGAGTCGATAATGC.........................2511.00100100
................................................................................................................................................................................................................................................................................GATAATGCGTCAATGGCTAGACGTTTGT.....2811.00100100
................................................................................................................................................................................................................................................................................GATAATGCGTCAATGGCTAGACGTT........2511.00100100
dp5
TGGACTGCGAGCTCAAGCTCTTGCCCATACATTTTCTCACACAGTCGGAGGTGAGAAT--GCA---------------------------------------------------------------ACTGA----AAGATCTGTA---A-------------------------------A------------------------------------GAA-GAAACTGATTCGTTAATTTCT------TTGACAGGTTGGCAATGAGGAGTCAATGATGCGCCAATGGCTGGATGTTTGCGTAACSizeHit CountTotal NormTotalM022

Male-body
M040

Female-body
M059

Embryo
M062

Head
V043

Embryo
V051

Head
V112

Male-body
SRR902010

Ovary
SRR902011

Testis
SRR902012

CNS imaginal disc
......................................................................................................................................................................................................................................................................................GCGCCAATGGCTGGATGTTTGCGTA..2511.0010000001000
.................................................................................................................................................................................................................................................................................ATGATGCGCCAATGGCTGGATGTT........2411.0010000100000
droPer2
TGGACTGCGAGCTCAAGCTCTTGCCCATACATTTTCTCACACAGTCGGAGGTGAGAAT--GCA---------------------------------------------------------------ACTGA----AAGATCTGTA---A-------------------------------A------------------------------------GAA-GAAACTGATTCGTTAATTTCT------TTGACAGGTGGGCAATGAGGAGTCAATGATGCGCCAATGGCTGGATGTTTGCGTAACSizeHit CountTotal NormTotalM021

Embryo
M042

Female-body
V042

Embryo
V050

Head
V057

Head
V111

Male-body
No Reads
droAna3
TGGACTGCGAGCTTAAACTCTTGCCAATACATTTCCTTACACAATCTGAGGTGAGATT--TCT---------------------------------------------------------------ATCCA----TATA--TG------------------TGTACTTAAATAGAGGTGAA------------------------------------CTA-GAAAATAATATGATTA--TGT------TATGCAGGTGGGCAATGAAGAATCTATGATGCGTCAATGGCTGGACGTGTGTGTAACSizeHit CountTotal NormTotalM044

Female-body
M058

Embryo
V039

Embryo
V055

Head
V105

Male-body
V106

Head
........................................................................................................................................................................................................................................................................................GTCAATGGCTGGACGTGTGTGT...2211.001000010
.....................................................................................................................................................................................................................................................................AATGAAGAATCTATGATGCGT.......................2111.001000010
droBip1
TGGACTGCGAGCTGAAACTCTTGCCAATACATTTCCTCACACAATCTGAGGTGAGATA--TTAATCATGTGCAGT--------------------------------------------------------AGTTT-----------------------G---------------------CAAATT-AA---------------------------CTAGAAAATA------TTTA--TAA------TGTACAGGTTGGCAATGAAGAATCTATGATGCGCCAGTGGCTGGACGTGTGTGTAACSizeHit CountTotal NormTotal
No Reads
droKik1
TGGATTGTGAGCTGAAACTGTTGCCTATCCATTTCCTCACCCAGTCCGAGGTAAGGGA--ATAATAATTTGAAAA--------------------------------------------------------ATATA-----------------------A---------------------CGTTTT-TT-----------------------CTAC---GAGAATT------CTAT--CTT------TTTGCAGGTGGGTAACGAAGAGACCATGATGCGCCAGTGGCTTGACGTGTGCGTTACSizeHit CountTotal NormTotal
No Reads
droFic1
TGGACTGCGAGCTGAAACTATTACCCATACACTTTCTCACCCAGTCCGAGGTGAGAGA--TAATGA-----AAATATATTGCATTTTCTTTGTGGGAAATTATAAAGTTCTAATTTGATATTCGTATTTAA----AATACATTTG---GAGT-------ACGGTT---------------A------------------------------------GCT-AATTAAATTTAATGTC--TAC------TTTGCAGGTGGGCAACGAGGAGTCGATGATGCGCCAATGGCTCGACGTGTGCGTGACSizeHit CountTotal NormTotal
No Reads
droEle1
TGGACTGTGAGCTGAAGCTTTTGCCCATACATTTCCTCACACAGTCCGAGGTGAGAGA--TTATTA---------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--TTC------CTTGCAGGTGGGCAACGAGGAGTCGATGATGCGCCAGTGGCTGGATGTGTGCGTAACSizeHit CountTotal NormTotal
No Reads
droBia1
TGGACTGCGAGCTTAAGCTGTTGCCAATACATTTCCTCACTCAGTCCGAGGTGAGATT--TTGTAGA-----------------------------------------------------------TACAT----ATATCTTGCA---GAT-----------------------------------TTTACTAAGGTATAATGCTATGTTTACTAAT----------TA----TTGT--TTGCTATATATTGCAGGTGGGCAACGAGGAGTCGATGATGCGCCAATGGCTGGACGTGTGCGTGACSizeHit CountTotal NormTotal
No Reads
droTak1
TGGACTGCGAGCTGAAACTATTGCCCATACATTTCCTCACACAGTCCGAGGTGAGAGA--TTAGAG---------------------------------------------------------------AT----ATTATTGCTGTATCATA-------AC--------------------T--CTT-TT-----------------------AAAC----------TATTATTTGC--TAC------CTTTTAGGTGGGCAACGAGGAGTCAATGATGCGCCAATGGCTGGACGTGTGCGTAACSizeHit CountTotal NormTotal
No Reads
droEug1
TGGACTGCGAGCTGAAATTATTACCCATACATTTCCTCACACAGTCTGAGGTAAGTGA--TC-----------------------------------------------------------------TTAA----AGATGAT----------TTACTAT--TATT---------------A------------------------------------ATA-AAAATAAAATC--------GC------TTTGCAGGTAGGCAACGAGGAATCAATGATGCGCCAGTGGCTTGATGTGTGCGTAACSizeHit CountTotal NormTotal
No Reads
dm3
TGGACTGCGAGCTGAAACTTTTGCCCATACATTTCCTTACACAGTCGGAGGTGAGAGC--TTA---------------------------------------------------------------TTCAA----ATATCCTGTA---GAAC-------ATTGTG---------------A------------------------------------GCT-TAGACATTTCCGTTCC--TTG------CCTGCAGGTTGGCAACGAGGAGTCAATGATGCGTCAATGGCTGGACGTGTGCGTAACSizeHit CountTotal NormTotalGSM154618

Ovary
GSM154620

Ovary
GSM154621

Ovary
GSM154622

Ovary
GSM180328

Head
GSM180329

Mixed-body
GSM180330

Embryo
GSM180331

Embryo
GSM180332

Embryo
GSM180333

Embryo
GSM180334

Larvae
GSM180335

Disc
GSM180336

Pupae
GSM180337

S2
GSM239041

Head
GSM239050

Head
GSM239051

S2
GSM239052

S2
GSM246084

Head
GSM266765

S2
GSM280082

Ovary
GSM280083

Ovary
GSM280084

Ovary
GSM280085

Testis
GSM280086

Ovary
GSM280087

S2-NP
GSM280088

S2-NP
GSM312995

Head
GSM313160

Head
GSM313161

Head
GSM313162

Head
GSM313163

Head
GSM313164

Head
GSM313165

Head
GSM343287

Embryo
GSM379050

Ovary
GSM379051

Ovary
GSM379052

Ovary
GSM379053

Ovary
GSM379054

Ovary
GSM379055

Ovary
GSM379056

Ovary
GSM379057

Ovary
GSM379058

Ovary
GSM379059

Ovary
GSM379060

Ovary
GSM379061

Ovary
GSM379062

Ovary
GSM379063

Ovary
GSM379064

Ovary
GSM379065

Ovary
GSM379066

Ovary
GSM379067

Ovary
GSM424739

S2
GSM424740

S2
GSM424741

S2
GSM467729

Female-body
GSM467730

Female-body
GSM467731

Female-body
M002

CS
M003

Male-body
M004

Male-body
M005

ML-DmD32
M006

ML-DmD32
M029

OSC
M030

OSC
M031

OSC
M032

S2-R+
M033

S2-R+
M034

S2-R+
M035

S2-R+
M036

S2-R+
M037

S2-R+
M038

S2-R+
M039

S2-R+
M048

S2-R+
OSS2

OSS
OSS6

OSS
OSS7

OSS
OSS8

OSS
S1

Head
S10

Embryo
S11

Embryo
S12

Embryo
S13

Embryo
S14

Embryo
S15

S2-GMR
S16

Kc
S17

Larvae
S18

Larvae
S19

Pupae
S2

Head
S20

Pupae
S21

Disc
S22

Head
S23

Female-body
S24

Male-body
S25

Larvae
S26

Larvae
S27

Pupae
S28

Pupae
S29

Head
S3

Male-body
S30

S2-GMR
S31

S2
S32

S2
S33

Kc
S34

Kc
S35

Kc
S4

Female-body
S5

Disc
S6

Embryo
S7

Embryo
S8

S2
S9

Embryo
SRR001337

Head
SRR001338

Head
SRR001339

Head
SRR001340

Head
SRR001341

Head
SRR001342

Head
SRR001343

Head
SRR001344

Head
SRR001345

Head
SRR001346

Head
SRR001347

Head
SRR001348

Head
SRR001349

Head
SRR001664

Head
SRR010951

Ovary
SRR010952

Ovary
SRR010953

Ovary
SRR010954

Ovary
SRR010955

Ovary
SRR010956

Ovary
SRR010957

Ovary
SRR010958

Ovary
SRR010959

Ovary
SRR010960

Ovary
SRR014268

Embryo
SRR014269

Embryo
SRR014270

Embryo
SRR014271

Embryo
SRR014272

Embryo
SRR014273

Ovary
SRR014274

Ovary
SRR014275

Ovary
SRR014276

Ovary
SRR014277

Ovary
SRR014278

Ovary
SRR014279

Ovary
SRR014280

Ovary
SRR014281

Ovary
SRR014282

Ovary
SRR023197

S2
SRR023399

S2
SRR023400

S2
SRR023402

S2
SRR023407

S2
SRR029028

S2
SRR029029

S2
SRR029030

S2
SRR029031

S2
SRR029032

S2
SRR029033

S2
SRR029608

Head
SRR029633

Head
SRR030145

gb3
SRR031692

Head
SRR031693

Head
SRR031694

Head
SRR031696

Head
SRR031697

Head
SRR031698

Head
SRR031699

Head
SRR031700

Head
SRR031701

Head
SRR031702

Head
SRR031703

Head
SRR031704

Head
SRR032092

S2
SRR032093

S2
SRR032094

S2
SRR032095

S2-NP
SRR032096

S2-NP
SRR032152

Head
SRR060643

Testis
SRR060644

Ovary
SRR060645

Testis
SRR060646

Ovary
SRR060647

Ovary
SRR060648

Ovary
SRR060649

Ovary
SRR060650

Testis
SRR060651

Ovary
SRR060652

Testis
SRR060653

Ovary
SRR065151

Ovary
SRR065152

Ovary
SRR065153

Ovary
SRR065154

Ovary
SRR065155

Ovary
SRR065800

Ovary
SRR065801

Ovary
SRR065802

Ovary
SRR065803

Ovary
SRR065804

Ovary
SRR065805

Ovary
SRR065806

Ovary
SRR065807

Ovary
SRR097865

S2-NP
SRR097866

S2-NP
SRR097867

S2-NP
SRR298536

Ovary
SRR298537

Ovary
SRR298711

Ovary
SRR298712

Ovary
SRR317110

Ovary
SRR317111

Ovary
SRR317112

Ovary
SRR317113

Ovary
SRR317114

Ovary
SRR317115

Ovary
SRR317116

Ovary
SRR317117

Ovary
SRR341115

S2
SRR341116

S2
SRR341117

S2
SRR341118

S2
SRR351332

Mixed-body
SRR351333

Mixed-body
T004

OSC
T005

CME-L1
V001

Embryo
V002

Embryo
V003

S2
V006

Female-body
V007

Head
V008

S2
V009

CME-L1
V010

ML-DmD20-C5
V011

Sg4
V012

Male-body
V013

Head
V014

DTT
V015

DreRFHV
V018

Kc167
V019

GM2
V020

S2-R+
V021

ML-DmD21
V022

ML-DmD32
V023

Head
V024

Kc167
V025

S2-R+
V026

1182-2H
V027

ML-DmD21
V028

CME-W1-Cl.8+
V029

ML-DmD9
V030

ML-DmD8
V031

GM2
V032

S1
V033

CME-W1-Cl.8+
V034

ML-DmD16-C3
V035

ML-DmD32
V036

ML-DmD20-C5
V037

S2
V038

S2
V063

Ovary
V0632

Ovary
V064

Ovary
V0642

Ovary
V065

Ovary
V0652

Ovary
V066

Ovary
V0662

Ovary
V067

S2-NP
V073

mbn2
V074

S3
V075

ML-DmBG1-C1
V076

ML-DmBG3-C2
V077

Head
V078

Head
V079

Head
V080

Head
V081

Embryo
V082

Embryo
V083

Male-body
V084

Female-body
V085

CME-W2
V086

Female-body
V088

Ovary
V0882

Ovary
V089

Ovary
V0892

Ovary
V090

Male-body
V091

fGS/OSS
V092

Male-body
V093

Male-body
V094

S2-R+
V095

S2-R+
V096

Ovary
V097

Ovary
V098

Ovary
V125

ML-DmD9
V126

CME-L1
V127

G2
V128

S3
V129

ML-DmBG1-C1
V130

ML-DmBG3-C2
V131

ML-DmD16-C3
V132

ML-DmD32
V133

Sg4
V134

ML-DmD8
V135

CME-W2
V136

Male-body
V137

Head
V138

Male-body
V139

Female-body
V140

Female-body
V141

Female-body
V142

Female-body
V144

OSC
V145

S2
V146

S1
V147

1182-2H
V148

mbn2
GSM1528798

follicle cells
........................................................................................................................................................................................................................................................................GAGGAGTCAATGATGCGTCA.....................2017.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TGGCAACGAGGAGTCAATGATGCGTC......................2615.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000210000000000001000000000000
.........................CATACATTTCCTTACACAGTCGGAG...............................................................................................................................................................................................................................................................2514.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................ATGGCTGGACGTGTGCGT...1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000100000000000000000000000000000
......GCGAGCTGAAACTTTTGCCCATACA..................................................................................................................................................................................................................................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ATTTCCTTACACAGTCGGAGGT.............................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................ATGGCTGGACGTGTGCGTA..1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GATGCGTCAATGGCTGGACGTGTGC.....2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................GGCTGGACGTGTGCGTAA.1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GAGCTGAAACTTTTGCCCATACA..................................................................................................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GGACTGCGAGCTGAAACTT.............................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002
........GAGCTGAAACTTTTGCCCATAC...................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ATGATGCGTCAATGGCTGGAC...........2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..............................................................................................................................................................................................................................................................GGTTGGCAACGAGGAGTCAATG.............................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................CAATGATGCGTCAATGGCTGG.............2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................................................................................................................................................................................................................................................................GGAGTCAATGATGCGTCAATGGCTGG.............2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GGCAACGAGGAGTCAATGATGC.........................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGCGAGCTGAAACTTTTGCCCATAC...................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................CGAGGAGTCAATGATGCGTCAATGGCTA..............2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................TCAATGGCTGGACGTGTGCGATC.2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................CAATGGCTGGACGTGTGCGTAAC2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................GGCAACGAGGAGTCAATGATGCGTCA.....................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CGTCAATGGCTGGACGTGTGCGTAA.2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................AGGAGTCAATGATGCGTCAATG..................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.....TGCGAGCTGAAACTTTTGCCC.......................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GATGCGTCAATGGCTGGACGTGT.......2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
......GCGAGCTGAAACTTTTGCCCATACATTT...............................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ATGATGCGTCAATGGCTGGA............2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TGATGCGTCAATGGCTGGACGTGTG......2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................CAATGGCTGGACGTGTGCGTT..2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........................................................................................................................................................................................................................................................................................CAATGGCTGGACGTGTGCGT...2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................CATACATTTCCTTACACAGTCGGAGGT.............................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................TCAATGGCTGGACGTGTGCGTAA.2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................AATGGCTGGACGTGTGCGT...1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................GAGGAGTCAATGATGCGTC......................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
......................................................................................................................................................................................................................................................................ACGAGGAGTCAATGATGCGTCAATGGC................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................A---GAAC-------ATTGTG---------------A------------------------------------GCT-TAGACATTT...........................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................GCCCATACATTTCCTTACACAGTCGGA................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GGTTGGCAACGAGGAGTCAATGATG..........................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................GGAGTCAATGATGCGTCA.....................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TCAATGATGCGTCAATGGCTGGACGT.........2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGAGAGC--TTA---------------------------------------------------------------TTCAA----ATATCCT...................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGCGTCAATGGCTGGACGTGTGCGTA..2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TGAAACTTTTGCCCATACATTTCCT............................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CAACGAGGAGTCAATGATGCGTC......................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........AGCTGAAACTTTTGCCCATACA..................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ATTTCCTTACACAGTCGGAGGTT............................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TGATGCGTCAATGGCTGGACGTGT.......2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GATGCGTCAATGGCTGGAC...........1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AACGAGGAGTCAATGATGCGTCA.....................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................ATTGTG---------------A------------------------------------GCT-TAGACATTTCCGT.......................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
droSim2
TGGACTGCGAGCTGAAACTTTTGCCCATTCATTTCCTTACACAGTCGGAGGTGAGAGC--TTA---------------------------------------------------------------TTCAA----ATAGCCTGTG---GAAC-------ATTGTG---------------A------------------------------------GCT-TAGACATTTCCGTTCC--TTG------CTTGCAGGTTGGCAACGAGGAGTCGATGATGCGTCAATGGCTGGACGTGTGCGTAACSizeHit CountTotal NormTotalM023

Head
M024

Male-body
M025

Embryo
M053

Female-body
O001

Testis
O002

Head
SRR553485

Ovary
SRR553486

Ovary
SRR553487

Ovary
SRR553488

Ovary
SRR618934

Ovary
V044

Embryo
SRR902008

Ovary
SRR902009

Testis
SRR1275487

Male larvae
SRR1275485

Male prepupae
SRR1275483

Male prepupae
..........................ATTCATTTCCTTACACAGTCGGAGGT.............................................................................................................................................................................................................................................................2611.00101000000000000000
......GCGAGCTGAAACTTTTGCC........................................................................................................................................................................................................................................................................................1911.00100100000000000000
droSec2
TGGACTGCGAGCTGAAACTTTTGCCCATACATTTCCTTACACAGTCGGAGGTGAGAGC--TTA---------------------------------------------------------------TTCAA----ATATCCTGTG---GAAC-------ATTGGG---------------A------------------------------------GCT-TAGACATTTCCGTTCC--TTG------CTTGCAGGTTGGCAACGAGGAGTCGATGATGCGGCAATGGCTGGACGTGTGCGTAACSizeHit CountTotal NormTotalM054

Female-body
V113

Male-body
V114

Embryo
V115

Head
.....................................................................................................................................................................................................................................................................AACGAGGAGTCGATGATGCGGCAAT...................2511.0010010
...............................................................................................................................................................................................................................................................................CGATGATGCGGCAATGGCTGGAC...........2311.0010100
...............................................................................................................................................................................................................................................................................CGATGATGCGGCAATGGCT...............1911.0010010
droYak3
TGGACTGCGAGCTGAAACTTTTGCCCATACATTTCCTTACACAATCGGAGGTGAGAGT--TTA---------------------------------------------------------------TTTTA----ATATCATATG---GAAC-------ATTGTG---------------A------------------------------------GCA-GAGACATTTCCGTTCC--CTA------CTTGCAGGTTGGCAACGAGGAGTCGATGATGCGTCAATGGCTGGACGTGTGCGTGACSizeHit CountTotal NormTotalM026

Head
M043

Female-body
M056

Embryo
V046

Embryo
V052

Head
V058

Head
V120

Male-body
SRR1275488

Male larvae
SRR1275486

Male prepupae
SRR1275484

Male prepupae
GSM1528802

follicle cells
.....................................................................................................................................................................................................................................................................AACGAGGAGTCGATGATGCGT.......................2111.00100000010000
..........................ATACATTTCCTTACACAATCGGAGGTT............................................................................................................................................................................................................................................................2711.00100000010000
...........................................................................................................................................................................................................................................................................GAGTCGATGATGCGTCAATGGCT...............2311.00100000010000
........................................................................................................................................................................................................................................................................................GTCAATGGCTGGACGTGTGCGTG..2311.00100000010000
droEre2
TGGACTGCGAGCTGAAACTTTTGCCCATACATTTCCTTACACAATCGGAGGTGAGAGCCCTTC---------------------------------------------------------------CTTAA----ATATAATTTG---GATT-------ACTGTA---------------A------------------------------------GCA-GAGATATATCCATTCC--TTA------CTTGCAGGTTGGCAACGAGGAGTCGATGATGCGTCAATGGCTGGACGTGTGCGTGACSizeHit CountTotal NormTotalM055

Female-body
M057

Embryo
V060

Head
V040

Embryo
V107

Male-body
V108

Head
GSM1528801

follicle cells
..........................ATACATTTCCTTACACAATCGGAG...............................................................................................................................................................................................................................................................2412.0020000200
.....................................................................................................................................................................................................................................................................................TGCGTCAATGGCTGGACGTGTGCG....2411.0010000100
......................................................................................................................................................................................................................................................................................GCGTCAATGGCTGGACGTGTGCG....2311.0011000000
..........................................................................................................................................................................................................................................................................................CAATGGCTGGACGTGTGCGT...2011.0010000100
................................................................................................................................................................................................................................................................................GATGATGCGTCAATGGCTGGA............2111.0010000010
.................................................................................................................................................................................................................................................................TGGCAACGAGGAGTCGATG.............................1911.0011000000
.............................................................................................................................................................................................................................................................................................TGGCTGGACGTGTGCGTGAC2011.0011000000
....................................................................................................................................................................................................................................................................................ATGCGTCAATGGCTGGACGTGTGCGTGA.2811.0010000100

Generated: 10/20/2015 at 07:10 PM