dmo_2165

CDS [Dmoj\GI21966-cds]; exon [dmoj_GLEANR_7222:3]; exon [dmoj_GLEANR_7222:2]; CDS [Dmoj\GI21966-cds]; intron [Dmoj\GI21966-in]

##################################################-----------------------------------------------------------------------------------------------------------------------################################################## AGATATCCCTGGGACCTGAGGCGAAGTCCGGCGAATTCAACGTCGTTCAGGTATGGAAAAACACTGACCAACACTTTGATAGAGCTCTGTCTGGTCAAAAGGGGGCAGAGCGGCTGTGAGAGGTAGTGCATGAATATCGTATAACACAAAACTACTCGCCCATTTGCAGGCGGAAACGAACGTGAACGACGACGGCGAGAAGAAGACAGTCAAAATTCC ************************************************..((((.................((((.((((.(((((((((..........)))))))))..)))).))))(((((.......................)))))....))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	M046 female body	M060 embryo	V056 head	V049 head
...........................................................................................................................................................................................GACGATGGCGAGAAGGATACA...........	21	3	3	40.67	122	88	33	0	1	0
...........................................................................................................................................................................................GACGATGGCGAGAAGGATAC............	20	3	8	18.38	147	108	37	0	0	2
............................................................................................................................................................................................ACGATGGCGAGAAGGATACA...........	20	3	4	5.00	20	13	7	0	0	0
.............................................................................................................................................................................................CGATGGCGAGAAGGATACA...........	19	3	20	2.80	56	29	26	0	0	1
............................................................................................................................................................................................ACGATGGCGAGAAGGATAC............	19	3	19	1.58	30	21	9	0	0	0
......................................................................................................................................................................CAGGCGGAAACGAACGTGAACGA..............................	23	0	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................AGGCGGAAACGAACGTGAACGA..............................	22	0	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................GAACGACGACGGCGAGAAGAAGACA...........	25	0	1	1.00	1	0	1	0	0	0
...................................................................................................................................................AAAACTACTCGCCCATTTGCAG..................................................	22	0	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................GGCGGAAACGAACGTGAAC................................	19	0	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................GACGACGGCGAGAAGGATA.............	19	2	2	0.50	1	1	0	0	0	0
...................................................................................................................................................................................................GGAGAAGAGGACAGTCAAACT...	21	3	2	0.50	1	0	0	0	1	0
........................................................................................................................AGGTAGTGCATGGTTGTCGT...............................................................................	20	3	6	0.17	1	1	0	0	0	0
..............................................................................................................................................................................................GACGCCGACAAGAAGACA...........	18	2	9	0.11	1	0	0	0	0	1
...........................................................................................................................................................................................GACGACGGCGAGAAGGAT..............	18	2	11	0.09	1	1	0	0	0	0
......................GAAGTCCGGCGAAACCATCG.................................................................................................................................................................................	20	3	13	0.08	1	0	1	0	0	0

TCTATAGGGACCCTGGACTCCGCTTCAGGCCGCTTAAGTTGCAGCAAGTCCATACCTTTTTGTGACTGGTTGTGAAACTATCTCGAGACAGACCAGTTTTCCCCCGTCTCGCCGACACTCTCCATCACGTACTTATAGCATATTGTGTTTTGATGAGCGGGTAAACGTCCGCCTTTGCTTGCACTTGCTGCTGCCGCTCTTCTTCTGTCAGTTTTAAGG ************************************************..((((.................((((.((((.(((((((((..........)))))))))..)))).))))(((((.......................)))))....))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V041 embryo
.................................................................CTGGTTGTGAAACTATCTCGA.....................................................................................................................................	21	0	1	1.00	1	0	1
...........CCTGGACTCCGCTTCAGGC.............................................................................................................................................................................................	19	0	1	1.00	1	1	0
..............................................................TGACTGGTTGTGAAACTA...........................................................................................................................................	18	0	1	1.00	1	1	0
..............................CGCTTAAGTTGCAGCAAGTCCATA.....................................................................................................................................................................	24	0	1	1.00	1	1	0
.................................................................................................................................................TCTTGTGATGAGCGGGTC........................................................	18	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6540:33441808-33442026 -	dmo_2165	AGATATCCCTGGGACCTGAGGCGAAGTCCGGCGAATTCAACGTCGTTCAGGTATG---------------------GAAAAACACTGACCAACA---------------------CTTTGATAGAGCTCTGTCTGGTC-------AAAAGGGGGCA--G----------AG--C--GGC--TGTGAGAG---------GTAGT---G------CATGA-----------------A------------------TATCGTATA--ACAC--AAAACT-------ACTCGCCCA------------------------------------------------TTTGCAGGCGGAAACGAACGTGAACGACGACGGCGAGAAGAAGACAGTCAAAATTCC
droVir3	scaffold_12822:783410-783641 -	dvi_2351	AGATATCACTCGGACCCGAGGCAAAATCTGGTGAATTCAATGTTGTACAGGTATGTACATAAACAATTTTCAAGTGGAAAAATACCGACAAGCACTTGG-------------------------------------TC-------A------------AGGGATTGTCGAGGG------GTTG----GGGTTATGGCTGTGGT---CTATTAGTACTCATATCACAT--AACAAATT-----------------------------------------------ACTTGGGCA------------------------------------------------TCTGCAGGCGGAAACCAACGTGCACGACGACGGCGAGAAGAAGACAGTCAAAATTCC
droGri2	scaffold_15074:3012406-3012643 +		AGATCTCCTTGGGACCCGAGGCGAAAACGGGCGAATTCAATGTTGTTCAGGCATGTAGACAATAATTTCTCCAGTGGAAAAACACTGACATACAG-------------------------------------------------------GAGGCA--GGGGAAAGTGGAAA----------G----GGGCAGTGACAGTGGCCATCTATTA------------------GCTTAA------------------TATCGCATA--ACAACAA---GTATTTAATAATCGTACA------------------------------------------------CTTGCAGGCGGAAACAAACGTGCACGATGACGGCGAGAAAAAGACAGTTAAAATTCC
droWil2	scf2_1100000004943:6063279-6063476 -		AGATTTCGCTGGGACACGAGGCAAAAACAGGCGAATTCAATGTTGTACAGGTTCGTAT---------------------CGGTGGA---------------------------------------------------------------------------------------------AT-----------------------------------------------------------------------------GAAGGGAAGGG--AAATGA-------CGAGTTGGAGACGCCTAATGACCTATGTGTGCTTGGGCCTTTTTTCCTTATTCAATTTTTATAGGCTGAAACGAACGCTATTAACGAGGGTGAGAAAAAGACAGTGAAGATTCC
dp5	2:937175-937342 -		AGATCTCCCTTGGATCCGAAGCGAAGACGGGGGAATTTAATGTTGTACAGGTACA---------------------GTATAGCATT----------TAGC-----------ATGGCTGT------------------------------------------------TGATGA------GC-----------------------------------------------------------------------------AAGGCCAAGAT--AATAGT-------TGATTCGCA------------------------------------------------ATTGCAGGCGGAGACAAACGTGAACGATGATGGTGAGAAAAAGACTGTGAAGATTCC
droPer2	scaffold_7:3723189-3723356 -		AGATCTCCCTTGGATCCGAAGCGAAGACGGGGGAATTTAATGTTGTACAGGTACA---------------------GTATAGCATT----------TAGC-----------ATGGCTGT------------------------------------------------TGATGA------GC-----------------------------------------------------------------------------AAGGCCAAGAT--AATAGT-------TGATTCGCA------------------------------------------------ATTGCAGGCGGAGACAAACGTGAACGATGATGGTGAGAAAAAGACTGTGAAGATTCC
droAna3	scaffold_13340:20838627-20838683 -		AGATTTCCCTCGGGCCCGAGGCAAAGTCCGGCGAATTCAACGTGGTGCAGGTGAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396413:1567673-1567761 +		ATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTAAATAA--AA--TAATTTA----ATTTTT------------------------------------------------TGTTTCAGGTGGAGACATTCACAAACGAAGATGGTGAGAAGAAGGAGGTGAAGATTCC
droKik1	scf7180000302810:863895-863951 -		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTAGGCAGAGACAAACGTGAACGACGATGGCGAAAAGAAGACAGTAAAGATTCC
droFic1	scf7180000453826:769036-769092 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACAGGCCGAGACGAACATAAACGATGATGGTGAGAAGAAGACGGTGAAGATTCC
droEle1	scf7180000491280:2103343-2103428 -		AGAAAGTTCATGACTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------A--------------------------------------------TAT---CGTATC------------------------------------------------TTTCTCAGGCGGAAACGAACATTAACGAAGATGGCGAGAAGAAGACGGTGAAGATTCC
droRho1	scf7180000779336:150959-151015 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCAGGCGGAGACAAACATAAACGACGATGGCGAGAAGAAGACTGTGAAGATTCC
droBia1	scf7180000302113:1567115-1567171 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCCAGGCGGAAACGAACATAAACGACGATGGCGAGAAGAAGACGGTGAAGATTCC
droTak1	scf7180000415765:219022-219078 -		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCAGGCGGAGACAAACATAAACGACGATGGCGAGAAGAAGACGGTGAAGATTCC
droEug1	scf7180000409555:310081-310132 -		AGATTTCCCTCGGACCCGAGGCAAAGACCGGCGAATTCAACGTTGTACAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr3R:25829830-25830075 -		AGATTTCCCTCGGCCCAGAAGCGAAGACCGGCGAATTCAACGTTGTACAGGTGAGCCT---------------------CGATACCG----------GCAATCTGCCCCGCGTCGCA-----------------GGTCGTAAATTTAAAGGCGACATGG--------------C-----------------------TG----------ATTTAACTCATATCATATTTCGCGAAAAACTCGGAAATTATACAGTGATAAAAT---GCACAC---AAATTTAA---TGTTTC------------------------------------------------GCTTCCAGGCGGAGACGAACATAAACGACGATGGCGAGAAGAAAACCTTGAAGATCCC
droSim2	3r:25176110-25176355 -	dsi_22056	AGATTTCCCTCGGCCCAGAAGCGAAGACCGGCGAATTCAACGTTGTACAGGTGAGCCT---------------------CGATACAG----------GCAATTTGCCCCGAGCCGCA-----------------GGTCGTAAATTAAAAAACGGCATGT--------------C-----------------------TG----------ATTTAACTCATCTCATATTTCGTGAAAAACTAGAAAATTTTACAGTGATAAAAT---TAACAA---AAATGTAA---TATTTC------------------------------------------------TCTTCCAGGCGGAGACGAACATAAACGACGATGGCGAGAAGAAAACACTGAAGATCCC
droSec2	scaffold_4:4675620-4675865 -		AGATTTCCCTCGGCCCAGAAGCGAAAACCGGCGAATTCAACGTTGTACAGGTGAGCCT---------------------CGATACAG----------GCAATTTGCCCCGAGCCGCA-----------------GGTCGTAAATTAAAAAACGGCATGT--------------C-----------------------TG----------ATTTAACTCATCTCATATTTCGCGAAAAACTAGGAAATTTGTCAGTGATAAAAT---TAACAA---AAATGTAA---TATTTA------------------------------------------------TCTTCCAGGCGGAGACGAACATAAACGACGATGGCGAGAAGAAAACCCTGAAGATCCC
droYak3	3R:26752413-26752650 -		AGATTTCCCTCGGCCCCGAGGCAAAGACCGGCGAATTCAACGTTGTACAGGTGAGCCT---------------------CGATACAG----------GGAATTCGCCTCGGTCTGCC-----------------GGTCGTAAATTATAGAACGGCATGG--------------CGTTCC--TTTAAGAG---------G--GA---A------CACTGATATCACCT--AACATAT------------------AATGGAATT--TTTACAA---ATATTTTA---TATTTC------------------------------------------------TCTACCAGGCGGAGACGAACATAAACGACGATGGCGAGAAGAAGACGGTGAAGATCCC
droEre2	scaffold_4820:2177951-2178036 +		AGATTTCCCTCGGCCCAGAGGCAAAGACCGGCGAATTCAACGTTGTACAGGTGAGCCT---------------------CGATATGG----------AGA-----------ACCGCC-----------------GGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAAAATT--

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

AGATATCCCTGGGACCTGAGGCGAAGTCCGGCGAATTCAACGTCGTTCAGGTATG---------------------GAAAAACACTGACCAACA---------------------CTTTGATAGAGCTCTGTCTGGTC-------AAAAGGGGGCA--G----------AG--C--GGC--TGTGAGAG---------GTAGT---G------CATGA-----------------A------------------TATCGTATA--ACAC--AAAACT-------ACTCGCCCA------------------------------------------------TTTGCAGGCGGAAACGAACGTGAACGACGACGGCGAGAAGAAGACAGTCAAAATTCC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................................................................................................................................................CAGGCGGAAACGAACGTGAACGA..............................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AGGCGGAAACGAACGTGAACGA..............................	22	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GAACGACGACGGCGAGAAGAAGACA...........	25	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................AAAACT-------ACTCGCCCA------------------------------------------------TTTGCAG..................................................	22	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................GGCGGAAACGAACGTGAAC................................	19	1	1.00	1	1	0	0	0	0	0

droVir3

AGATATCACTCGGACCCGAGGCAAAATCTGGTGAATTCAATGTTGTACAGGTATGTACATAAACAATTTTCAAGTGGAAAAATACCGACAAGCACTTGG-------------------------------------TC-------A------------AGGGATTGTCGAGGG------GTTG----GGGTTATGGCTGTGGT---CTATTAGTACTCATATCACAT--AACAAATT-----------------------------------------------ACTTGGGCA------------------------------------------------TCTGCAGGCGGAAACCAACGTGCACGACGACGGCGAGAAGAAGACAGTCAAAATTCC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................ACGTGCACGACGACGGCG......................	18	1	2.00	2	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................GACGGCGAGAAGAAGACAGT.........	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TGGGCA------------------------------------------------TCTGCAGGCGGAAAC..........................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ATATCACTCGGACCCGAGGC........................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GAATTCAATGTTGTACAGGC..........................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TTGGGCA------------------------------------------------TCTGCAGGCGGAAA...........................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................AAAAATACCGACAAGCACTTG............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ATATCACTCGGACCCGAGGCA.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AGGCGGAAACCAACGTGCA.................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................AACGTGCACGACGACGGCG......................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................AACGTGCACGACGACGGC.......................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ATCACTCGGACCCGAGGCAAAATCTGG...............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GCACGACGACGGCGAGAAGAAGAC............	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GATATCACTCGGACCCGA...........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ATCACTCGGACCCGAGGCAAA.....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................GGAAACCAACGTGCACGACGACGGCG......................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................CAGGCGGAAACCAACGTGCACGACGAC..........................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................CGTGCACGACGACGGCGAGA...................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................CAACGTGCACGACGACGGCG......................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CTGGTGAATTCAATGTTGTACAGGCG.........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CACGACGACGGCGAGAAGAAGACA...........	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CGACGACGGCGAGAAGAAG..............	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................ACGACGGCGAGAAGAAGACAGTC........	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CTCGGACCCGAGGCAAAATCTGGT..............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ATCACTCGGACCCGAGGCAAAATCTGGT..............................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GACGACGGCGAGAAGAAGAC............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................AACGTGCACGACGACGGCGAGAA..................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GATATCACTCGGACCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................CAACGTGCACGACGACGGC.......................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAACCAACGTGCACGACGAC..........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................CGTGCACGACGACGGCGAGAAG.................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AATTCAATGTTGTACAGGCG.........................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

AGATCTCCTTGGGACCCGAGGCGAAAACGGGCGAATTCAATGTTGTTCAGGCATGTAGACAATAATTTCTCCAGTGGAAAAACACTGACATACAG-------------------------------------------------------GAGGCA--GGGGAAAGTGGAAA----------G----GGGCAGTGACAGTGGCCATCTATTA------------------GCTTAA------------------TATCGCATA--ACAACAA---GTATTTAATAATCGTACA------------------------------------------------CTTGCAGGCGGAAACAAACGTGCACGATGACGGCGAGAAAAAGACAGTTAAAATTCC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AGATTTCGCTGGGACACGAGGCAAAAACAGGCGAATTCAATGTTGTACAGGTTCGTAT---------------------CGGTGGA---------------------------------------------------------------------------------------------AT-----------------------------------------------------------------------------GAAGGGAAGGG--AAATGA-------CGAGTTGGAGACGCCTAATGACCTATGTGTGCTTGGGCCTTTTTTCCTTATTCAATTTTTATAGGCTGAAACGAACGCTATTAACGAGGGTGAGAAAAAGACAGTGAAGATTCC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.GATTTCGCTGGGACACGAGGC........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.................................AATTCAATGTTGTACAGG...........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
........CTGGGACACGAGGCAAAAAC..................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................ATTAACGAGGGTGAGAAA.................	18	1	1.00	1	0	0	1	0	0
.........................AACAGGCGAATTCAATGTT..................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AAACGAACGCTATTAACGAGGGTGA.....................	25	1	1.00	1	0	0	1	0	0
.GATTTCGCTGGGACACGA...........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GAACGCTATTAACGAGGGTGAGAAA.................	25	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................ATTAACGAGGGTGAGAAAAA...............	20	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................CTGAAACGAACGCTATTAACGAGGGT.......................	26	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................GCTATTAACGAGGGTGAG....................	18	1	1.00	1	0	0	0	1	0
..................................ATTCAATGTTGTACAGGC..........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...........GGACACGAGGCAAAAACAGGCGAA...........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................ATTAACGAGGGTGAGAAAAAGACAGT.........	26	1	1.00	1	0	0	1	0	0
.GATTTCGCTGGGACACGAGGCAAAAAC..................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................GAAACGAACGCTATTAACGAG..........................	21	1	1.00	1	0	0	0	1	0

dp5

AGATCTCCCTTGGATCCGAAGCGAAGACGGGGGAATTTAATGTTGTACAGGTACA---------------------GTATAGCATT----------TAGC-----------ATGGCTGT------------------------------------------------TGATGA------GC-----------------------------------------------------------------------------AAGGCCAAGAT--AATAGT-------TGATTCGCA------------------------------------------------ATTGCAGGCGGAGACAAACGTGAACGATGATGGTGAGAAAAAGACTGTGAAGATTCC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................CGAAGCGAAGACGGGGGA............................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CGGAGACAAACGTGAACGATGATGGT.......................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	2
...TCTCCCTTGGATCCGAAGCGAAGACGG................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	2	0
................................................................................................................................................................................................................................................................................................................................................................................TGATGGTGAGAAAAAGACTGT.........	21	1	2.00	2	0	0	0	0	0	0	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................................................................GGTGAGAAAAAGACTGTGAAGATT..	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................GACAAACGTGAACGATGATG.........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........GGATCCGAAGCGAAGACGGGGGA............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............CCGAAGCGAAGACGGGGGAATTTAATG....................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............CCGAAGCGAAGACGGGGGAATT.........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GACAAACGTGAACGATGAT..........................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GATGATGGTGAGAAAAAGA.............	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AAACGTGAACGATGATGGTGAGAA..................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............TCCGAAGCGAAGACGGGGGAA...........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AAACGTGAACGATGATGGT.......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........CTTGGATCCGAAGCGAAGA...................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............CCGAAGCGAAGACGGGGGA............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................GATGA------GC-----------------------------------------------------------------------------AAGGCCAAGAT--AATAGT-------TG................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............TCCGAAGCGAAGACGGGGGAATT.........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................AAACGTGAACGATGATGGTGAG....................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TGAACGATGATGGTGAGAAAAAGAC............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GACAAACGTGAACGATGATGGT.......................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..ATCTCCCTTGGATCCGAAGC........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................ACGTGAACGATGATGGTGAGAA..................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GAACGATGATGGTGAGAAAAAGACTG..........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................GGTGAGAAAAAGACTGTGAAGA....	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AAACGTGAACGATGATGGTGAGA...................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................AACGTGAACGATGATGGT.......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1

droPer2

AGATCTCCCTTGGATCCGAAGCGAAGACGGGGGAATTTAATGTTGTACAGGTACA---------------------GTATAGCATT----------TAGC-----------ATGGCTGT------------------------------------------------TGATGA------GC-----------------------------------------------------------------------------AAGGCCAAGAT--AATAGT-------TGATTCGCA------------------------------------------------ATTGCAGGCGGAGACAAACGTGAACGATGATGGTGAGAAAAAGACTGTGAAGATTCC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGACTGTGAAGATTCC	21	1	4.00	4	4	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................GATGGTGAGAAAAAGACTGTGAAGATTCC	29	1	3.00	3	3	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................GAGAAAAAGACTGTGAAGATTCC	23	1	3.00	3	3	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................GTGAGAAAAAGACTGTGAAG.....	20	1	3.00	3	3	0	0	0	0	0
.....TCCCTTGGATCCGAAGCGAAGACGGGG..............................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................AAAGACTGTGAAGATTCC	18	1	2.00	2	2	0	0	0	0	0
AGATCTCCCTTGGATCCGAAGCGAAGACG.................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................AAAAGACTGTGAAGATTCC	19	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................GGTGAGAAAAAGACTGTGAA......	20	1	1.00	1	1	0	0	0	0	0
............GATCCGAAGCGAAGACGGGGGA............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1

droAna3

AGATTTCCCTCGGGCCCGAGGCAAAGTCCGGCGAATTCAACGTGGTGCAGGTGAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................CGAGGCAAAGTCCGGCGAATC.........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
.............................GGCGAATTCAACGTGGTGCAGGCC.........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0

droBip1

ATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTAAATAA--AA--TAATTTA----ATTTTT------------------------------------------------TGTTTCAGGTGGAGACATTCACAAACGAAGATGGTGAGAAGAAGGAGGTGAAGATTCC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTAGGCAGAGACAAACGTGAACGACGATGGCGAAAAGAAGACAGTAAAGATTCC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACAGGCCGAGACGAACATAAACGATGATGGTGAGAAGAAGACGGTGAAGATTCC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGAAAGTTCATGACTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------A--------------------------------------------TAT---CGTATC------------------------------------------------TTTCTCAGGCGGAAACGAACATTAACGAAGATGGCGAGAAGAAGACGGTGAAGATTCC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCAGGCGGAGACAAACATAAACGACGATGGCGAGAAGAAGACTGTGAAGATTCC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCCAGGCGGAAACGAACATAAACGACGATGGCGAGAAGAAGACGGTGAAGATTCC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCAGGCGGAGACAAACATAAACGACGATGGCGAGAAGAAGACGGTGAAGATTCC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGATTTCCCTCGGACCCGAGGCAAAGACCGGCGAATTCAACGTTGTACAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

AGATTTCCCTCGGCCCAGAAGCGAAGACCGGCGAATTCAACGTTGTACAGGTGAGCCT---------------------CGATACCG----------GCAATCTGCCCCGCGTCGCA-----------------GGTCGTAAATTTAAAGGCGACATGG--------------C-----------------------TG----------ATTTAACTCATATCATATTTCGCGAAAAACTCGGAAATTATACAGTGATAAAAT---GCACAC---AAATTTAA---TGTTTC------------------------------------------------GCTTCCAGGCGGAGACGAACATAAACGACGATGGCGAGAAGAAAACCTTGAAGATCCC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................TAAACGACGATGGCGAGAAGAAAACCT..........	27	1	18.00	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................ACATAAACGACGATGGCGAG....................	20	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GACGAACATAAACGACGATGGCGAGAA..................	27	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TAAACGACGATGGCGAGAAGAAAACCTT.........	28	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0
.......................AAGACCGGCGAATTCAACGTTGT................................................................................................................................................................................................................................................................................................................................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................ATAAACGACGATGGCGAGAAGAAAAC............	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................CGCGTCGCA-----------------GGTCGTAAATTTAAAGGC......................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............GCCCAGAAGCGAAGACCGGCG.............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CCTCGGCCCAGAAGCGAAGACCGGC..............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TTCCCTCGGCCCAGAAGCGAA.....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ACGAACATAAACGACGATGGCGA.....................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGATTTCCCTCGGCCCAGAAGCGAAGACCGGCGAATTCAACGTTGTACAGGTGAGCCT---------------------CGATACAG----------GCAATTTGCCCCGAGCCGCA-----------------GGTCGTAAATTAAAAAACGGCATGT--------------C-----------------------TG----------ATTTAACTCATCTCATATTTCGTGAAAAACTAGAAAATTTTACAGTGATAAAAT---TAACAA---AAATGTAA---TATTTC------------------------------------------------TCTTCCAGGCGGAGACGAACATAAACGACGATGGCGAGAAGAAAACACTGAAGATCCC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................AGCGAAGACCGGCGAATTCAACGTT..................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
.............CCCAGAAGCGAAGACCGGCGAATTC........................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GACGAACATAAACGACGATGGCGAGA...................	26	1	2.00	2	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CAGGCGGAGACGAACATAAACGACGA...........................	26	1	2.00	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
....TTCCCTCGGCCCAGAAGCGAAGAC..................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........TCGGCCCAGAAGCGAAGACCGGCGAATT.........................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............CCAGAAGCGAAGACCGGCGAATTCA.......................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...TTTCCCTCGGCCCAGAAGCGAAGAC..................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CAGGCGGAGACGAACATAAACGACG............................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................ACCGGCGAATTCAACGTTGTACAGGC..........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........CTCGGCCCAGAAGCGAAGACCGGCGAA...........................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................GACCGGCGAATTCAACGTTGTACAGGC..........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CGAACATAAACGACGATGGCG......................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AGGCGGAGACGAACATAAACGACGAT..........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...TTTCCCTCGGCCCAGAAGCGAAGACCGGC..............................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GACGAACATAAACGACGATGGC.......................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TAAACGACGATGGCGAGAAGAAAACAC..........	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GGCGGAGACGAACATAAACGACGAT..........................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................ACCGGCGAATTCAACGTTGTACAGGA..........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................ACGATGGCGAGAAGAAAACACTGAAG.....	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............CCAGAAGCGAAGACC.................................................................................................................................................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................CGGCGAATTCAACGTTGTACAGGC..........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................GAAGACCGGCGAATTCAACGTTG.................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................GAAGCGAAGACCGGCGAATTCAACGTT..................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................AAACGACGATGGCGAGAAGAAAAC............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................TTCAACGTTGTACAGG...........................................................................................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...TTTCCCTCGGCCCAGAAGCGAAG....................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................CAGGCGGAGACGAACATAAACGACGAT..........................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AGGCGGAGACGAACATAAACGACGA...........................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................ATTCAACGTTGTACAGGC..........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...TTTCCCTCGGCCCAGAAGCGAAGACCG................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................AACGACGATGGCGAGAA..................	17	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................GCGAATTCAACGTTG.................................................................................................................................................................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AGATTTCCCTCGGCCCAGAAGCGAAAACCGGCGAATTCAACGTTGTACAGGTGAGCCT---------------------CGATACAG----------GCAATTTGCCCCGAGCCGCA-----------------GGTCGTAAATTAAAAAACGGCATGT--------------C-----------------------TG----------ATTTAACTCATCTCATATTTCGCGAAAAACTAGGAAATTTGTCAGTGATAAAAT---TAACAA---AAATGTAA---TATTTA------------------------------------------------TCTTCCAGGCGGAGACGAACATAAACGACGATGGCGAGAAGAAAACCCTGAAGATCCC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................................................................................................................................GACGATGGCGAGAAGAAAACCCTGAA......	26	1	1.00	1	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GACGAACATAAACGACGATGGCGAG....................	25	1	1.00	1	0	0	1	0
............GCCCAGAAGCGAAAACCGGCG.............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
......CCCTCGGCCCAGAAGCGAAAACCGGCG.............................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................ATAAACGACGATGGCGAGAAG.................	21	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................CATAAACGACGATGGCGAGA...................	20	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................GACGAACATAAACGACGATGGCG......................	23	1	1.00	1	0	0	1	0
..........CGGCCCAGAAGCGAAAACC.................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
................................GAATTCAACGTTGTACAGG...........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................ACGACGATGGCGAGAAGAAA..............	20	1	1.00	1	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GAACATAAACGACGATGGCGAGA...................	23	1	1.00	1	0	1	0	0
..................................ATTCAACGTTGTACAGGT..........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................AACGACGATGGCGAGAAGAA...............	20	1	1.00	1	0	0	1	0
..................................ATTCAACGTTGTACAGGC..........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................TAAACGACGATGGCGAGAA..................	19	1	1.00	1	0	0	1	0

droYak3

AGATTTCCCTCGGCCCCGAGGCAAAGACCGGCGAATTCAACGTTGTACAGGTGAGCCT---------------------CGATACAG----------GGAATTCGCCTCGGTCTGCC-----------------GGTCGTAAATTATAGAACGGCATGG--------------CGTTCC--TTTAAGAG---------G--GA---A------CACTGATATCACCT--AACATAT------------------AATGGAATT--TTTACAA---ATATTTTA---TATTTC------------------------------------------------TCTACCAGGCGGAGACGAACATAAACGACGATGGCGAGAAGAAGACGGTGAAGATCCC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................AAAGACCGGCGAATTCAACGTTGT................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
....TTCCCTCGGCCCCGAGGCAAAGACCGG...............................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2
....................................................................................................................................................................................................................................................................................................................................................................GAACATAAACGACGATGGC.......................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GAACATAAACGACGATGGCGA.....................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................AACATAAACGACGATGGCGAGAAGAAGA.............	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................GCAAAGACCGGCGAATTCAACGT...................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............CCGAGGCAAAGACCGGCGA............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................GGCGAGAAGAAGACGGTGAAGATCCC	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GACGATGGCGAGAAGAAGACGGTGAA......	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................ATGGCGAGAAGAAGACGGTGAAGATCC.	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................GAGGCAAAGACCGGCGAATTCAACGT...................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GACGATGGCGAGAAG.................	15	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0

droEre2

AGATTTCCCTCGGCCCAGAGGCAAAGACCGGCGAATTCAACGTTGTACAGGTGAGCCT---------------------CGATATGG----------AGA-----------ACCGCC-----------------GGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAAAATT--	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................GACCGGCGAATTCAACGTTGTACAG............................................................................................................................................................................................................................................................................................................................................................	25	1	21.00	21	0	0	0	0	0	0	21
..................................ATTCAACGTTGTACAGGC..........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0
AGATTTCCCTCGGCCCAGAGGC........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.................GAGGCAAAGACCGGCGAATTCAACGTT..................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0

dmo_2165

scaffold_6540:33441858-33441976 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-26.4	-26.3	-26.2