dmo_2139

CDS [Dmoj\GI10688-cds]; exon [dmoj_GLEANR_10594:1]; exon [dmoj_GLEANR_10594:2]; CDS [Dmoj\GI10688-cds]; intron [Dmoj\GI10688-in]

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+
(CAG)n	Simple_repeat	Simple_repeat	+

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATCGCAGCAAGAAGCGCCAGCAGTCGAATCAAGGAGCACAGCCAAAAGCGGTAAGGCCCGTGTATAAACTAGAAAACTAGTTTTTATCTAGGAAACTGAAAATTGTTTCTCGAGGTGTATCAGCATTCATTGATTATTAATAGATAATGTCAGAATTTTGAGTATTTAATATATAATTAAATATTATTGTCATATATTTATTGAACTAATATTTCTGTTCTACTTGGGCAGCCATTGCAGCAGCAACAGCAACAACCACAACAGCAGCAGCAGCAGCAACA ************************************************.....(((((.(((.(((((((....))))))).(((((.((((((........))))))..)))))..((((.((((....((((((....))))))....)))).))))(((((((((.....)))))))))..................((((..........))))))).)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body
...................................................................................................................................................................................................................................GCAGCCATTGCAGCAGCAACAGC...............................	23	0	3	0.33	1	1	0
........................................................................................................................................................................................................................GTCCTACTTCGGGAGCCA...............................................	18	3	17	0.24	4	3	1
..........................................................................................GAAAACTGAACATTGTTTC............................................................................................................................................................................	19	2	6	0.17	1	1	0
...............................................................................................................................................................................................................................................................CCACAACAGCAGCAGCAGCA......	20	0	20	0.05	1	0	1
........................................................................................................................................................................................................................ATCCTACTTGGGGAGCCA...............................................	18	3	20	0.05	1	1	0

TAGCGTCGTTCTTCGCGGTCGTCAGCTTAGTTCCTCGTGTCGGTTTTCGCCATTCCGGGCACATATTTGATCTTTTGATCAAAAATAGATCCTTTGACTTTTAACAAAGAGCTCCACATAGTCGTAAGTAACTAATAATTATCTATTACAGTCTTAAAACTCATAAATTATATATTAATTTATAATAACAGTATATAAATAACTTGATTATAAAGACAAGATGAACCCGTCGGTAACGTCGTCGTTGTCGTTGTTGGTGTTGTCGTCGTCGTCGTCGTTGT ************************************************.....(((((.(((.(((((((....))))))).(((((.((((((........))))))..)))))..((((.((((....((((((....))))))....)))).))))(((((((((.....)))))))))..................((((..........))))))).)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V056 head
........TTCTACGCGTACGTCAGCTTA............................................................................................................................................................................................................................................................	21	3	3	0.33	1	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6540:31274042-31274322 +	dmo_2139	ATCGCAGCAAGAAGCGCCAGCAGTCGAATCAAGGAGCACAGCCAAAAG-CGGTAAGGCCCGTGTATA--AACTA----GAAA----------------------------ACTAGTTTTTAT-----------CTAGGAAACTGAAAATTGT--------------------------TTCTCG--AGGTGTATCA---GCATTC-ATTGATTATT--------AATAGA------------------------------TAATGTCAGAATTTTGA----------------GTATTTAAT-ATA-------------------------------------------------------------------TAATT----AAATATT-----------------------------AT-----------TGT---CATAT-------------------------------ATT-TATTGAACTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTC-------------------------------------------------------------------------------------------T----G------------------------------TTCTACTTGGGCAGC------CA-----------TTGCAGCAGCAACAGCAACAACC-------ACAACAG---------------CAGC-AGCAGCAGCAAC--------------------A
droVir3	scaffold_13047:9374993-9375344 -	dvi_16156	ATCGCAGCAAGAGGCGCCAG------------GGAGCACAGCAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCACAACAAGCGGTAAATCCAAAGGCATAAACGTTATAGTTAGGATAGTTTTTAGTTTAT------------------------ACTTTAACTTTAACTGTA----GCAAACCCTTTTTCTGTTATTTCCCTGCTACATTGAGGTAACTCTCAGTTGCG--------------------------------------GCATCAATTATCCAAGAGTTTTAACATTAATTTTGTGGGCTATTCTCCAGTCAGTTGATTATTTAATTGACT-----------------------------------------------------------------------------------------T-TTCTGTTAAATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTATTG---ATTCGTCGC----------TAGCCAATACAACAT------------------------------------------------CAGCAGCAACAGC--AACAACTACAACAGCAGCAGCAGCTGCA-------GCAGCAA---------------CAAC-AACAACAGCAAC--------------------A
droGri2	scaffold_14906:3887529-3887720 +		ATCGTAGCAAGAAGCGCCAGCAGTCTAATCA--GAGCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGCAGAAATCACAGCAAATGGTAA-------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGCC---TAATTTTGATA-TT-TTGATAAATAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCACATT---AAAAGAGCTAGA-------TAATTAATACAACTA----------TAAATAAA--------------------T-------GAT------TAATAT--ATTGATT------------ACAATATTA-------GCAGCAG---------------CAGC-AGCAGCAACAAC--------------------A
droWil2	scf2_1100000004963:784790-785056 -		ACAACAACAACAAGCAGCAGCAGCAACAACAACAACAACAACAGACAGGCGGCAAAACTTGCGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------GAAA--------------------------------------------------------------------------CT-------------------------------------------------------------------CGTTG----GAAAGCGAGCGTTTTTCACCAGATTATCGTGTTGTGTC-----------TGT---GTTGT-------------------------------GTT-TGTAAGGG------------------------------------------------GGAACTAAATAA---------------------------------------------AAATAAACATTAATTGTGTGAAAAATAATCATCAT----------------------------------CGAAATGG-----------------------------------AA-----------------------------------------------------------------------------TTGACCAT---------CGGAATAAT--------------------CA-------AT------CAGCATTT-----AACCAGCTACAGCAGCAACTACA-------ACAACAA---------------CTAC-AAGAGTAGAAGC--------------------A
dp5	XR_group6:938484-938643 +		ATC------------------------------------------------------------AATTTTGATGAA-----------------------------------------------TTAAATTGATT----------------------------------------------------------------------------------------------------------------------------------------ATTTTTG------------------------ATCATTTAAT---------------------------------------------------------------------------------------------------TTGCACATTTC-----------TGT---TTTGT-------------------------------TTT-TGTTTTGCAATTGTTTACTTTTTATCGGTCCATTTGTTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAA--------------------------------------------------------------AAACTT-------------C-----------------------G--ACGCAAAAATCGAAACA-------CAGTGCA---------------GGGG-CACAACAGCTAC--------------------A
droPer2	scaffold_9:2495296-2495423 +		AAT------------------------------------------------------------ATATATA------------CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGTA-----------------------------TG-----------TGG---CATAC-------------------------------AAA-TATACAACGAA------------------------------------------------------------------------------------TTTT-------------------------------------------------------------------------TTTTGAACAACAAAAT---------------------------------------------------------------------------------------------------------------------ACGCGCGTTT-GT---G-----------------------------------TGAC------CC-----------AAATAGCAGCAGCAACAACAACA-------ACAACAA---------------CAAC-AACAACAACAAC--------------------A
droAna3	scaffold_13340:20663335-20663536 +		AGA------------------------------------------------------------AAACAAA---------------------------------------------------------------------------AAAGTGT--------------------------TTGTTG--AATATTTTGA---GAAATA-ATTAAAGATTTCAAGATAAAGAGTAA-------------------------------------------------------------------------------------------------------------------------------------AATGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGCC---TTATGT------------------------------------------GAAAATTAAGAAAAAG----------------------------------CGAAATGTGCACGAAATCTATGAAA------------ATGAGAAT--------------------------------------T-----------------------------------------------------------------------------------------------------TA-----------GAGCAGCAACAGCAGCAACAGCA-------GCAGCAG---------------CAAC-AACAGCAACAGCAATCTGCCACAAGCGATAATT
droBip1	scf7180000396535:154083-154351 -		AAGCGAACGAGGT-----------TGAACCACAAAGCCAAAAAAAAAC-AGGCTAGGGGCTAGTATA--ACTTA----GTTA----------------------------AG----------ATATAGACATT----------------------------------------------------------------------------------------------------------------------------------------TTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAATTAAACATGTT----------------------------------CTAGAAGG-----------------------------------AAATAAAACCATATAGATTATGAGGAATATTTTTAATATTTTTAATTTTT---AATATTTTCAGGCTTAGCCCAAGTGACTT---------AC--------------------C-------AGATCATTGGGCCTC------AG-----------GTACAGCA------AATCCAGCGACCTCAAACAGCAGCAGCATCAATAATTCCATT-GGTGGCAACAAC--------------------A
droKik1	scf7180000302441:794961-795079 +		AGC------------------------------------------------------------AGCTTGAGTCAG-------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-ATA-------------------------------------------------------------------CAACG----CCATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------ACCATCATCCAACACATCATTAC-CA-----------------------------------------CC------AGCAGC--------AGCAGCAGCAACAGCAGCAGCA-------A---------TACCATCAACAGCAGC-AGCAGCATCAAC--------------------A
droFic1	scf7180000453495:29497-29679 +		GAA------------------------------------------------------------AATCATG-TCTG-------CAAATCT-----------------------------------------ATT------------------TTCCTTCATTGTAATTAAAAACCTTGTTTTGTG--TAATATA---------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------CAACC----ATCTCTT-----------------------------GT-----------TGT----------------------------------CAATCATCCCATTGGCTTATC----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCGAAACTGC------TC-----------TTGTTGCTGTCATAAAACGAAAAACCCCAAAACACAA---------------CATACTGCATAATAAAC--------------------A
droEle1	scf7180000490618:3702-3948 +		GAA------------------------------------------------------------AATAATCAAATTCCG----CAAAG-ACCCTCGGGCACAAATAGGTAGATTGGTTTCTAA-----------CCAA------------------CCTACTACAACGCGAAAAAACGCTTCTTG--CGATGTAATCGCA---AGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATA-----------------------------T---------------------------------------------TAATTAATTAATTAATTAATA---------------------------------------------------------------------------------------TATA-------------------------------------------------------------------------GTGCATGTATGCACTG-------------------ACCTACGCTTAT--------------------------------------------------------------C----------AGCAATAAGTAGCACAGCAGTGT-CT--------------------T------------------TAAC------CA-----------CTGCAACGGTAACAACAACAACA-------ACAACAA---------------CAAC-AACGGCAGCAAC--------------------G
droRho1	scf7180000779112:490-696 +		CGA------------------------------------------------------------CATCCATTC--------------------------------------------------------------------------------------------------------------------------------------------TATC--------ATCAAA------------------------------AAATGTCTGAATTTTT------------------------ATTATTTCATCTTCGAAA----G--------TTTTTAGTC----------------AATTTAGCACCCAAGTCGG--------------------------------------ATAAGATTGTTCTATTAATGTAAAAGTAA-------------------------------ATT-TGATGAGCTTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTCCGCTCTT------------CTCATATT--------------------------------------T-------CAGGG--------------------------------------------------------------CGGCTA-------------T-----------------------CAGCAACAACAAAGGCAGCC-------ACATCAG---------------CAGC-AGCAACAACAAC--------------------A
droBia1	scf7180000302126:2321335-2321526 +		TTAGCTTTAACAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATT--------AAGAGT------------------------------AAAAGTTAATATTTGGAGACGCTATATCTAGTTAAACTTAAT-AAATA-------------------------------------------------------------------TATTACAAACAATT-----------------------------CT-----------TGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTATAATTTTT-------------------------------------------------------------------------TTCGAATT--------------------------------------T-------TAGAG--------------AG---------TCACACCCTTTT-CT-----------------------------------------CC------CGGTGCAC-----TGCCTGCTGCAACAGCAACTGCA-------ATAATTG---------------CAGC-AGCAACATAATC--------------------A
droTak1	scf7180000415399:1137528-1137748 -		AAA------------------------------------------------------------ACCTTTTGTTAT-------GC-------------------------------------------------TTATCGAACAAAAAATTAT--------------------------TTTTCATTTTCTAGAATATTA---AGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATA-----------------------------C---------------------------------------------CAATTAAT-------------------------------------------ATTCTAAAAATTAAAATTAAAAATAAATTAAT--------A----------------T-----------------------------------------------AAAATCCAAATCTTATCATCGCCTTCTTTTTTCCAGTT---------------------------------------------------------------------------------------------------------------AC---------GCCCACCGATCT-CTCGAT-----------------------------------GAAG------CC-----------GACCAGCGGCCTGGGCGGCAACA-------TGGTGAA---------------CAAC-AACAACAGCAAC--------------------A
droEug1	scf7180000408176:793389-793628 -		GTA------------------------------------------------------------TAGAATA--------GGAA----------------------------TCAAGCTT----------------------------------------------------------------CAAGATCTGGAGG--------------------------------------------------------------------------ATTCGTG------------------------AT-CCCTGATCTCCGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATCCACTGGCTGATCACAAAATTCCAGAAAAAACCAAAATAAA--------ATA---TTATTTTGATA-TA-TTCTTAAATATATT--------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCTTTTT---ATTCGCATCGAGCGAGGAGCAGGCAACGC---------TT--------------------C------------------CGCT------TTCCGC--GCCGAGT------------GCAACTGCA-------ACTGCAA---CGGCAGCAACATCAGCCCGAAAAACCGAA--------------------A
dm3	chr3R:18885652-18885785 -		ATT------------------------------------------------------------TTCTGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGA-ATA-------------------------------------------------------------------TAATG----GAATATATATGATATATACAACATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAACACATT--------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCTT--------------------------------------C----T------------------------------GTTTCCACAGCTCTC------CG-----------ATGCAGCAGCAACAACAACAACA-------ACAACAG---------------CAGC-AGCAGCAGCTGC--------------------A
droSim2	2l:4711937-4712088 +		TCG------------------------------------------------------------ATTCTTCATCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGAAATAATA--------TTGTTATTC----------------GAATTAAACTCAATTTCGAACT----AACTATT-----------------------------CT-----------CAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGA-------------------TGGTAATGCTGC-------------------------------------------------------------------------------------------T----G------------------------------GGCAATACAGACGTC------AG-----------CAGAATCCGCTAAAGAAATAACA-------GCAGCAG---------------CAGC-GACAGCAACAAC--------------------G
droSec2	scaffold_12:235601-235739 +		ATA------------------------------------------------------------CATTAAA----------------------------------------------------------------------------------------------------------------------------------------------TATT--------TATATC------------------------------AAATTTG-----------------------------------------------------------------------------------------------TAAATTATTTAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTA-------------------------------------------------------------------------TTTTATACATATAAAG-------------------TCGCATTATTTC-------------------------------------------------------------------------------------------C----A------------------------------AAATCAGTTGACATT------TG-----------CTGCAGCAGCAGCAGCAGCAACA-------GCAGCAG---------------CAAC-AGCAGCAGCAAG--------------------A
droYak3	X:16521057-16521258 -		GTG------------------------------------------------------------TTTA--AACCAA-------CAAATCACTTTCAATCACAAAAAATTGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATTACAAAAAAATTAATGCGCTTTAAAAATG-------AG--------------TTATAAACATTAA-----TGCGGAATATTTAAAAT------------------------------------------------------------------------CAAGAAT--------------------------------------T---------------------------------------TAACCCA---------TAAAGTTGTCAAACAACCACAGCAA-------------T-----------------------GAGCAGCAACAATGGCAACGATCATTCGCAACAG---------------CAGCAGGTGGCATCAAC--------------------A
droEre2	scaffold_4929:1548009-1548159 -		TCA------------------------------------------------------------CCA------------------------------------------------------------------------------------------------------------------------------------------------ATGATT--------TTGAAA------------------------------AAGTTTTAGAACTGGGT----------------GTTTTTAAC-CCACA-------------------------------------------------------------------TCC----TACGAAT-----------------------------AT-----------TCT---GTGCC-------------------------------TCT-TGCTAAACGTTT------------------------------------------------------------------------------------------------------------------------------------AT-------------------------------------------------------------------------TTCATGTT--------------------------------------T-------TAGAG--------------------------------------------------------------CGGCTT-------------T-----------------------CAGCAACAACAGAGGCAGAC-------TCCCCAG---------------CATC-AGCAGCAGCAGC--------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

ATCGCAGCAAGAAGCGCCAGCAGTCGAATCAAGGAGCACAGCCAAAAG-CGGTAAGGCCCGTGTATA--AACTA----GAAA----------------------------ACTAGTTTTTAT-----------CTAGGAAACTGAAAATTGT--------------------------TTCTCG--AGGTGTATCA---GCATTC-ATTGATTATT--------AATAGA------------------------------TAATGTCAGAATTTTGA----------------GTATTTAAT-ATA-------------------------------------------------------------------TAATT----AAATATT-----------------------------AT-----------TGT---CATAT-------------------------------ATT-TATTGAACTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTC-------------------------------------------------------------------------------------------T----G------------------------------TTCTACTTGGGCAGC------CA-----------TTGCAGCAGCAACAGCAACAACC-------ACAACAG---------------CAGC-AGCAGCAGCAAC--------------------A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC------CA-----------TTGCAGCAGCAACAGC..........................................................................	23	3	0.33	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-------ACAACAG---------------CAGC-AGCAGCA..........................	20	20	0.05	1	0	0	0	0	0	1

droVir3

ATCGCAGCAAGAGGCGCCAG------------GGAGCACAGCAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCACAACAAGCGGTAAATCCAAAGGCATAAACGTTATAGTTAGGATAGTTTTTAGTTTAT------------------------ACTTTAACTTTAACTGTA----GCAAACCCTTTTTCTGTTATTTCCCTGCTACATTGAGGTAACTCTCAGTTGCG--------------------------------------GCATCAATTATCCAAGAGTTTTAACATTAATTTTGTGGGCTATTCTCCAGTCAGTTGATTATTTAATTGACT-----------------------------------------------------------------------------------------T-TTCTGTTAAATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTATTG---ATTCGTCGC----------TAGCCAATACAACAT------------------------------------------------CAGCAGCAACAGC--AACAACTACAACAGCAGCAGCAGCTGCA-------GCAGCAA---------------CAAC-AACAACAGCAAC--------------------A	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............GGCGCCAG------------GGAGCACAGCAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AGAGGCGCCAG------------GGAGCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................AAATCCAAAGGCATAAACGTTATAGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACAACAGCAGCAGCAGCT......................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCTGCA-------GCAGCAA---------------CAA...................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACAACAGCAGCAGCAGC.......................................................................	21	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAT------------------------------------------------CAGCAGCAACAGC--A..............................................................................................	21	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACAACAGCAGCAGCAGC.......................................................................	20	11	0.09	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCTGCA-------GCAGCAA---------------CA....................................	21	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGC--AACAACT........................................................................................	20	16	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAT------------------------------------------------CAGCAGCAACAGC--AAC............................................................................................	21	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA---------------CAAC-AACAACAGCAAC--------------------.	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGC--AACAACTACAAC...................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

ATCGTAGCAAGAAGCGCCAGCAGTCTAATCA--GAGCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGCAGAAATCACAGCAAATGGTAA-------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGCC---TAATTTTGATA-TT-TTGATAAATAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCACATT---AAAAGAGCTAGA-------TAATTAATACAACTA----------TAAATAAA--------------------T-------GAT------TAATAT--ATTGATT------------ACAATATTA-------GCAGCAG---------------CAGC-AGCAGCAACAAC--------------------A	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......GCAAGAAGCGCCAGCAGTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG---------------CAGC-AGCAGCAAC........................	19	20	0.05	1	1	0

droWil2

ACAACAACAACAAGCAGCAGCAGCAACAACAACAACAACAACAGACAGGCGGCAAAACTTGCGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------GAAA--------------------------------------------------------------------------CT-------------------------------------------------------------------CGTTG----GAAAGCGAGCGTTTTTCACCAGATTATCGTGTTGTGTC-----------TGT---GTTGT-------------------------------GTT-TGTAAGGG------------------------------------------------GGAACTAAATAA---------------------------------------------AAATAAACATTAATTGTGTGAAAAATAATCATCAT----------------------------------CGAAATGG-----------------------------------AA-----------------------------------------------------------------------------TTGACCAT---------CGGAATAAT--------------------CA-------AT------CAGCATTT-----AACCAGCTACAGCAGCAACTACA-------ACAACAA---------------CTAC-AAGAGTAGAAGC--------------------A	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------TGT---GTTGT-------------------------------GTT-TGTAAGGG------------------------------------------------GGA...........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.....................................................AAAACTTGCGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------GAAA--------------------------------------------------------------------------CT-------------------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..............CAGCAGCAGCAACAACAACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0
......................GCAACAACAACAACAACAACAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	16	0.06	1	0	1	0	0	0

dp5

ATC------------------------------------------------------------AATTTTGATGAA-----------------------------------------------TTAAATTGATT----------------------------------------------------------------------------------------------------------------------------------------ATTTTTG------------------------ATCATTTAAT---------------------------------------------------------------------------------------------------TTGCACATTTC-----------TGT---TTTGT-------------------------------TTT-TGTTTTGCAATTGTTTACTTTTTATCGGTCCATTTGTTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAA--------------------------------------------------------------AAACTT-------------C-----------------------G--ACGCAAAAATCGAAACA-------CAGTGCA---------------GGGG-CACAACAGCTAC--------------------A

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

AAT------------------------------------------------------------ATATATA------------CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGTA-----------------------------TG-----------TGG---CATAC-------------------------------AAA-TATACAACGAA------------------------------------------------------------------------------------TTTT-------------------------------------------------------------------------TTTTGAACAACAAAAT---------------------------------------------------------------------------------------------------------------------ACGCGCGTTT-GT---G-----------------------------------TGAC------CC-----------AAATAGCAGCAGCAACAACAACA-------ACAACAA---------------CAAC-AACAACAACAAC--------------------A	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACA-------ACAACAA---------------CAAC-AACAAC...........................	28	20	0.05	1	0	1	0	0	0	0

droAna3

AGA------------------------------------------------------------AAACAAA---------------------------------------------------------------------------AAAGTGT--------------------------TTGTTG--AATATTTTGA---GAAATA-ATTAAAGATTTCAAGATAAAGAGTAA-------------------------------------------------------------------------------------------------------------------------------------AATGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGCC---TTATGT------------------------------------------GAAAATTAAGAAAAAG----------------------------------CGAAATGTGCACGAAATCTATGAAA------------ATGAGAAT--------------------------------------T-----------------------------------------------------------------------------------------------------TA-----------GAGCAGCAACAGCAGCAACAGCA-------GCAGCAG---------------CAAC-AACAGCAACAGCAATCTGCCACAAGCGATAATT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................AAA---------------------------------------------------------------------------AAAGTGT--------------------------TTGTTG--AA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAA------------ATGAGAAT--------------------------------------T-----------------------------------------------------------------------------------------------------TA-----------GAGCAGC...................................................................................	24	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA-------GCAGCAG---------------CAAC-AACA.............................	22	20	0.60	12	11	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA-------GCAGCAG---------------CAAC-AACAGCAAC........................	27	4	0.25	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCA-------GCAGCAG---------------CAAC-AACAGC...........................	28	12	0.17	2	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCA-------GCAGCAG---------------CAAC-A................................	23	20	0.10	2	0	0	0	1	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA-------GCAGCAG---------------CAAC-AACAGC...........................	24	20	0.10	2	1	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCA-------GCAGCAG---------------C.....................................	18	20	0.10	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCA-------GCAGCAG---------------CA....................................	20	20	0.10	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCA-------GCAGCAG---------------CAAC-AACAGC...........................	27	12	0.08	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA-------GCAGCAG---------------CAAC-AACAGCAACAG......................	27	17	0.06	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---------------CAAC-AACAGCAACAGC.....................	20	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA-------GCAGCAG---------------CAAC-AACAGC...........................	25	20	0.05	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAACAGCA-------GCA.........................................................	22	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---------------CAAC-AACAGCAACAGC.....................	21	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCA-------GCAGCAG---------------CA....................................	19	20	0.05	1	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAGCAACAGC....................................................................	21	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGCA-------GCAGCA......................................................	20	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---------------CAAC-AACAGCAACAGCA....................	22	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCA-------GCAGCAG---------------CAAC-AACAGC...........................	23	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA-------GCAGCAG---------------CAAC-AACAGC...........................	21	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------GCAGCAG---------------CAAC-AACAGCAACAGC.....................	24	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA-------GCAGCAG---------------CAAC-AACAGCAACA.......................	25	20	0.05	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAACAGC....................................................................	20	20	0.05	1	0	1	0	0	0	0

droBip1

AAGCGAACGAGGT-----------TGAACCACAAAGCCAAAAAAAAAC-AGGCTAGGGGCTAGTATA--ACTTA----GTTA----------------------------AG----------ATATAGACATT----------------------------------------------------------------------------------------------------------------------------------------TTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAATTAAACATGTT----------------------------------CTAGAAGG-----------------------------------AAATAAAACCATATAGATTATGAGGAATATTTTTAATATTTTTAATTTTT---AATATTTTCAGGCTTAGCCCAAGTGACTT---------AC--------------------C-------AGATCATTGGGCCTC------AG-----------GTACAGCA------AATCCAGCGACCTCAAACAGCAGCAGCATCAATAATTCCATT-GGTGGCAACAAC--------------------A	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGC------------------------------------------------------------AGCTTGAGTCAG-------CA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-ATA-------------------------------------------------------------------CAACG----CCATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------ACCATCATCCAACACATCATTAC-CA-----------------------------------------CC------AGCAGC--------AGCAGCAGCAACAGCAGCAGCA-------A---------TACCATCAACAGCAGC-AGCAGCATCAAC--------------------A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GAA------------------------------------------------------------AATCATG-TCTG-------CAAATCT-----------------------------------------ATT------------------TTCCTTCATTGTAATTAAAAACCTTGTTTTGTG--TAATATA---------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------CAACC----ATCTCTT-----------------------------GT-----------TGT----------------------------------CAATCATCCCATTGGCTTATC----------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCGAAACTGC------TC-----------TTGTTGCTGTCATAAAACGAAAAACCCCAAAACACAA---------------CATACTGCATAATAAAC--------------------A	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAA------------------------------------------------------------AATAATCAAATTCCG----CAAAG-ACCCTCGGGCACAAATAGGTAGATTGGTTTCTAA-----------CCAA------------------CCTACTACAACGCGAAAAAACGCTTCTTG--CGATGTAATCGCA---AGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATA-----------------------------T---------------------------------------------TAATTAATTAATTAATTAATA---------------------------------------------------------------------------------------TATA-------------------------------------------------------------------------GTGCATGTATGCACTG-------------------ACCTACGCTTAT--------------------------------------------------------------C----------AGCAATAAGTAGCACAGCAGTGT-CT--------------------T------------------TAAC------CA-----------CTGCAACGGTAACAACAACAACA-------ACAACAA---------------CAAC-AACGGCAGCAAC--------------------G	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGA------------------------------------------------------------CATCCATTC--------------------------------------------------------------------------------------------------------------------------------------------TATC--------ATCAAA------------------------------AAATGTCTGAATTTTT------------------------ATTATTTCATCTTCGAAA----G--------TTTTTAGTC----------------AATTTAGCACCCAAGTCGG--------------------------------------ATAAGATTGTTCTATTAATGTAAAAGTAA-------------------------------ATT-TGATGAGCTTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTCCGCTCTT------------CTCATATT--------------------------------------T-------CAGGG--------------------------------------------------------------CGGCTA-------------T-----------------------CAGCAACAACAAAGGCAGCC-------ACATCAG---------------CAGC-AGCAACAACAAC--------------------A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTAGCTTTAACAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATT--------AAGAGT------------------------------AAAAGTTAATATTTGGAGACGCTATATCTAGTTAAACTTAAT-AAATA-------------------------------------------------------------------TATTACAAACAATT-----------------------------CT-----------TGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTATAATTTTT-------------------------------------------------------------------------TTCGAATT--------------------------------------T-------TAGAG--------------AG---------TCACACCCTTTT-CT-----------------------------------------CC------CGGTGCAC-----TGCCTGCTGCAACAGCAACTGCA-------ATAATTG---------------CAGC-AGCAACATAATC--------------------A	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAA------------------------------------------------------------ACCTTTTGTTAT-------GC-------------------------------------------------TTATCGAACAAAAAATTAT--------------------------TTTTCATTTTCTAGAATATTA---AGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATA-----------------------------C---------------------------------------------CAATTAAT-------------------------------------------ATTCTAAAAATTAAAATTAAAAATAAATTAAT--------A----------------T-----------------------------------------------AAAATCCAAATCTTATCATCGCCTTCTTTTTTCCAGTT---------------------------------------------------------------------------------------------------------------AC---------GCCCACCGATCT-CTCGAT-----------------------------------GAAG------CC-----------GACCAGCGGCCTGGGCGGCAACA-------TGGTGAA---------------CAAC-AACAACAGCAAC--------------------A	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GTA------------------------------------------------------------TAGAATA--------GGAA----------------------------TCAAGCTT----------------------------------------------------------------CAAGATCTGGAGG--------------------------------------------------------------------------ATTCGTG------------------------AT-CCCTGATCTCCGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATCCACTGGCTGATCACAAAATTCCAGAAAAAACCAAAATAAA--------ATA---TTATTTTGATA-TA-TTCTTAAATATATT--------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCTTTTT---ATTCGCATCGAGCGAGGAGCAGGCAACGC---------TT--------------------C------------------CGCT------TTCCGC--GCCGAGT------------GCAACTGCA-------ACTGCAA---CGGCAGCAACATCAGCCCGAAAAACCGAA--------------------A	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATT------------------------------------------------------------TTCTGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGA-ATA-------------------------------------------------------------------TAATG----GAATATATATGATATATACAACATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAACACATT--------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCTT--------------------------------------C----T------------------------------GTTTCCACAGCTCTC------CG-----------ATGCAGCAGCAACAACAACAACA-------ACAACAG---------------CAGC-AGCAGCAGCTGC--------------------A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................TGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGA-ATA-------------------------------------------------------------------TAATG----GA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCACAGCTCTC------CG-----------A.........................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCTC------CG-----------ATGCAGCAGC................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-------ACAACAG---------------CAGC-AGCAG............................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TCG------------------------------------------------------------ATTCTTCATCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGAAATAATA--------TTGTTATTC----------------GAATTAAACTCAATTTCGAACT----AACTATT-----------------------------CT-----------CAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGA-------------------TGGTAATGCTGC-------------------------------------------------------------------------------------------T----G------------------------------GGCAATACAGACGTC------AG-----------CAGAATCCGCTAAAGAAATAACA-------GCAGCAG---------------CAGC-GACAGCAACAAC--------------------G	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGACGTC------AG-----------CAGA......................................................................................	15	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

ATA------------------------------------------------------------CATTAAA----------------------------------------------------------------------------------------------------------------------------------------------TATT--------TATATC------------------------------AAATTTG-----------------------------------------------------------------------------------------------TAAATTATTTAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTA-------------------------------------------------------------------------TTTTATACATATAAAG-------------------TCGCATTATTTC-------------------------------------------------------------------------------------------C----A------------------------------AAATCAGTTGACATT------TG-----------CTGCAGCAGCAGCAGCAGCAACA-------GCAGCAG---------------CAAC-AGCAGCAGCAAG--------------------A	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA-------GCAGCAG---------------CAAC-A................................	21	20	0.05	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACA-------GCA.........................................................	19	20	0.05	1	0	0	0	1

droYak3

GTG------------------------------------------------------------TTTA--AACCAA-------CAAATCACTTTCAATCACAAAAAATTGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATTACAAAAAAATTAATGCGCTTTAAAAATG-------AG--------------TTATAAACATTAA-----TGCGGAATATTTAAAAT------------------------------------------------------------------------CAAGAAT--------------------------------------T---------------------------------------TAACCCA---------TAAAGTTGTCAAACAACCACAGCAA-------------T-----------------------GAGCAGCAACAATGGCAACGATCATTCGCAACAG---------------CAGCAGGTGGCATCAAC--------------------A

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

TCA------------------------------------------------------------CCA------------------------------------------------------------------------------------------------------------------------------------------------ATGATT--------TTGAAA------------------------------AAGTTTTAGAACTGGGT----------------GTTTTTAAC-CCACA-------------------------------------------------------------------TCC----TACGAAT-----------------------------AT-----------TCT---GTGCC-------------------------------TCT-TGCTAAACGTTT------------------------------------------------------------------------------------------------------------------------------------AT-------------------------------------------------------------------------TTCATGTT--------------------------------------T-------TAGAG--------------------------------------------------------------CGGCTT-------------T-----------------------CAGCAACAACAGAGGCAGAC-------TCCCCAG---------------CATC-AGCAGCAGCAGC--------------------A	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---------------CATC-AGCAGCAGCAGC--------------------.	19	20	0.05	1	0	0	0	0	1	0	0

dmo_2139

scaffold_6540:31274092-31274272 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads