dmo_2132

exon [dmoj_GLEANR_10535:6]; exon [dmoj_GLEANR_10535:5]; CDS [Dmoj\GI10623-cds]; CDS [Dmoj\GI10623-cds]; intron [Dmoj\GI10623-in]

##################################################------------------------------------------------------------------################################################## ACATGATCTCACAAGCCTGCGAGGACTTGCCAGCCAAGTACTATAGCATTGTAAGTAGATACATTCCCAATTCGATATATTTCTGTATCTTATATTATTTAATGTTTATATTTTAGTGCTCGCGAATGATAACTATTTACGGCTACAGCATCATGCACCTGTCCGA ************************************************..(((((...(((((...(((..((((((....))))))....)))....)))))...)))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body	V110 male body	M060 embryo	V056 head
....GATCTCACAAGCCTGCGAGGACTT..........................................................................................................................................	24	0	1	4.00	4	3	1	0	0
.....ATCTCACAAGCCTGCGAGGACTT..........................................................................................................................................	23	0	1	2.00	2	2	0	0	0
.....AACTCACAAGCCTGCGAGGACT...........................................................................................................................................	22	1	1	1.00	1	0	0	1	0
.........................................................................................................................GCGAATGATAACTATTTACGGCTACA...................	26	0	1	1.00	1	1	0	0	0
..............................................................................................................................TGATAACTATTTACGGCTACAGCATCAT............	28	0	1	1.00	1	1	0	0	0
.......CTCACAAGCCTGCGAGGACTT..........................................................................................................................................	21	0	1	1.00	1	1	0	0	0
......TCTCACAAGCCTGCGAGGACTTGCCAGC....................................................................................................................................	28	0	1	1.00	1	1	0	0	0
....GATCTCACAAGCCTGCGAGGACTTGCCA......................................................................................................................................	28	0	1	1.00	1	1	0	0	0
.......CTCACAAGCCTGCGAGGACT...........................................................................................................................................	20	0	1	1.00	1	1	0	0	0
...........................TGCCAGCCAAGTACTATAGC.......................................................................................................................	20	0	1	1.00	1	0	1	0	0
......................................................................................................................................ATTTACGGCTACAGCATCA.............	19	0	1	1.00	1	0	1	0	0
...........................................................................................................................GAATGATAACTATTTACGGCTAC....................	23	0	1	1.00	1	1	0	0	0
.CATGATCTCACAAGCCTGCGAGGACT...........................................................................................................................................	26	0	1	1.00	1	0	1	0	0
........................................................................................................................CGCGAATGATAACTATTTACGGCTACA...................	27	0	1	1.00	1	1	0	0	0
...........CAAGCCTGCGAGGACTTGCC.......................................................................................................................................	20	0	1	1.00	1	1	0	0	0
...............................................................................................................................GATAACTATTTACGGCTACAGCATC..............	25	0	1	1.00	1	1	0	0	0
........................................................................................................................................TTACGGCTACAGCATCATG...........	19	0	1	1.00	1	1	0	0	0
..........ACAAGCCTGCGAGGACTTGCCAGCCAA.................................................................................................................................	27	0	1	1.00	1	1	0	0	0
............................GCCAGCCAAGTACTATAGC.......................................................................................................................	19	0	1	1.00	1	0	0	0	1
.............AGCCTGCGAGGACTTGCCA......................................................................................................................................	19	0	1	1.00	1	1	0	0	0
ACATGATCTCACAAGCCTGCGAG...............................................................................................................................................	23	0	1	1.00	1	1	0	0	0
.......CTCACAAGCCTGCGAGGACTTGC........................................................................................................................................	23	0	1	1.00	1	1	0	0	0
..................................................................................................................................AACTATTTACGGCTACAGCAT...............	21	0	1	1.00	1	1	0	0	0
.............AGCCTGCGAGGACTTGCCAGCCA..................................................................................................................................	23	0	1	1.00	1	0	0	1	0
....GATCTCACAAGCCTGCGAGGA.............................................................................................................................................	21	0	1	1.00	1	1	0	0	0
.............................................................................................................................ATGATAACTATTTACGGCTACA...................	22	0	1	1.00	1	1	0	0	0
.............................................................................................ATTATTTAATGTTTATGTT......................................................	19	1	7	0.57	4	4	0	0	0
....................................................................AACTCGAAATATGTCTGTATC.............................................................................	21	3	7	0.14	1	0	1	0	0
............................................................................................CATTATTTAATGTTTATGTT......................................................	20	2	15	0.13	2	2	0	0	0
..............................................................................................TTATTTAATGTTTATGTT......................................................	18	1	20	0.05	1	1	0	0	0

TGTACTAGAGTGTTCGGACGCTCCTGAACGGTCGGTTCATGATATCGTAACATTCATCTATGTAAGGGTTAAGCTATATAAAGACATAGAATATAATAAATTACAAATATAAAATCACGAGCGCTTACTATTGATAAATGCCGATGTCGTAGTACGTGGACAGGCT ************************************************..(((((...(((((...(((..((((((....))))))....)))....)))))...)))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M046 female body
.............................................................................................TAATAAATTACAAATACAA......................................................	19	1	7	0.43	3	3
............TTGGGACGCTCCTGCTCGG.......................................................................................................................................	19	3	11	0.09	1	1
............................................................................................GTAATAAATTACAAATACAA......................................................	20	2	15	0.07	1	1

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6540:30212394-30212559 +	dmo_2132	ACATGATCTCACAAGCCTGCGAGGACTTGCCAGCCAAGTACTATAGCATTGTAAGT--AGAT-ACA-TTCC------------CAATTCGATA-------TATTTCTGTATCTT----A-T---A-T-TATTTAA-------TGTTTATATTTTAGTGCTCGCGAATGATAACTATTTACGGCTACAGCATCATGCACCTGTCCGA
droVir3	scaffold_13047:11547461-11547628 -		ACATGATCTCAGAGGCCTGTGAGAACTTGCCAGCCAAGTACTATAATATTGTAAGC--CAA------GAAC--AAGAC------ATCTCAATT-------TCATTTTGTATCTT----ACT---A-A-TTTGAAA----T--GGGTTTGATTTAAGTGCTCCGAGATGATCTCCATTTATGGCTTCAGCATTATGCATCTGTCTGA
droGri2	scaffold_14624:1600144-1600234 -		CAA----------------------CTTGTTA--------------------------------------------------------------------ATTTTGTG-------------------TGCCT--T--TTT--CTTATTTGTTGTAGTGCTCGGAAATGATCTCGATTTATGGCATCAGCATCATGCATCTGGCGGA
droWil2	scf2_1100000004943:10295286-10295447 -		ATATGACTGAGGTGGCTTGCGGTGATTTGCCAGCCAAATACTATAGCATTGTAAGT--AATT-TAT-GCTT----------------------GAAGAAGAGATAAAT---------AA-TTCAAATA--AT--TAACTC--TC--ATTTTTATAGTGCTCCGAAATGATCTCGATCTATGGCATCAGCATCAAACATTTGGCCGA
dp5	2:461729-461896 +		AAATGACCTCGGTGGCCTGCGAGAACTTGCCAGCCAAGTACTACAGCATTGTAAGG--CTCC-TAA-GACC--CTCCCACCCCCAACC-------AGATGTTGTTATT-------------------TAATT--TATCTT--CC--CTCTCGGTAGTGCTCTAAAATGATCTCCATCTATGGCAACAGCTTTAAGCATCTGTCCGA
droPer2	scaffold_7:3244236-3244403 +		AAATGACCTCGGTGGCCTGCGAGAACTTGCCAGCCAAGTACTACAGCATTGTAAGG--CTCC-TAA-GACC--CTCCCACCCCCAACC-------AGATGTTGTTATT-------------------TAATT--TATCTT--CC--CTCTCGGTAGTGCTCTAAAATGATCTCCATCTATGGCAACAGCTTTAAGCATCTGTCCGA
droAna3	scaffold_12911:4246628-4246804 +		AGATGACTTCCGTGGGCTGCGAGAACTTGCCGGCCAAGTACTACAAGATTGTAAGT--TCT--TAACCCTTAACTCATACGCAAAAC--A-------------TTATT--TATTAATTG-T---A--TTATTTAT--TATTACTATTATGTTGCAGTGCTCTGAGATGATCTCCATCTATGGAAAGAGCATCAACAATCTGGCCTC
droBip1	scf7180000396640:1100379-1100535 +		AGATGACTTCTGTGGGCTGCGAGAACTTGCCGGCCAAGTACTACAAGATTGTAAGT--TCC--TAAC--------------------CGAAAAGTGTATGACAGCAT--------------------GGCTT--AA-TTT--CTGACATCTTGCAGTGCTCTGAGATGATCTCCATCTATGGAAAGAGCATCATCAATCTGGCCTC
droKik1	scf7180000302390:728315-728481 -		AGATGACATCGACGGCCTGCGAGAACTTGCCAGCCAAGTACTACAAGATTGTAAGT--TGTGATAAC--------------------CCGATA-------ATATACCATTTCTTTAAAA-T---T--TAATTAAA--TAT--TTCTCTTTTTTCAGTGCTCTGAGATGATCTCCATTTATGGCAACAGCATCAAGAACCTGGCCAA
droFic1	scf7180000453782:586168-586325 +		AGATGACATCCGTGGGGTGCGAGAACTTGCCCGCCAAGTACTACAAAATTGTAAGATTGATT-TAT-ATTA----------------------A----TC---TAAAC---------AC-CTCA---AGCAG--TACTTT--CTTATCATCCGTAGTGCTCTGAGATGATCTCCATCTACGGCAACAGCATTAAGAACCTGGCCAA
droEle1	scf7180000491212:781177-781332 -		A--TGACATCGGTGGCATGCGAGATCTTGCCAGCCAAGTACTACAAGATTGTAGGACCTATT-TAC-ATTT----------------------CTATGTGTTACGAAT-------------------ACTTA--TAAT-T--CTCCCATTTTTTAGTGCTCCGAGATGATCTCCATCTATGGCAACAGCATTAAGAACCTGTCCAA
droRho1	scf7180000767479:44372-44528 +		AGATGACATCGGTGGCATGCGAGAACTTGCCAGCCAAGTACTATAAGATTGTAAGA--CTTT-TTG-TAT-------------------AT--ATATTTATTACAAAT-------------------TCTTA--TAAT-T--CTGTTATTTTGTAGTGCTCTGAGATGATCTCCATTTATGGCCACAGCATTAAGAACCTTTCCAA
droBia1	scf7180000302113:630990-631143 +		AGATGACATCGGTGGCCTGCGAGACCTTGCCAGCCAAGTACTACAAGATTGTAAGG--TTACATAT---CC----------------------CCTTATGGAAGAGAA-------------------ATCTT--TAACTA--TC--TTCATTTCAGTGCTCTGAGATGATCTCCATCTATGGCAACAGCCTTAAGAACTTGGCTCA
droTak1	scf7180000415367:4576-4729 +		AGATGACATCGCTGGCCTGCGAGAACTTGCCAGCCAAGTACTACAAGATTGTAAGA--T----TAC-ATTT----------------------GTTTATATAAGCAAA-------------------ATCTG--TAACTC--TTCTTATTTTCCAGTGCTCTGAGATGATCTCCATCTATGGCAACAGCATCAAGAACCTGGCCAA
droEug1	scf7180000409679:178476-178633 -		AAATGACATCGACGGCTTGCGAGACCTTGCCAGCCAAGTACTACAAGATTGTAAGAGTCCAT-TAT-ATTT----------------------GTTTATATAACAAA--------------------GGCTA--TAAGTC--TTCCTTACTTACAGTGCTCTGAGATGATCTCCATCTATGGCAACAGCATTAAGAACCTGTCCAA
dm3	chr3R:26709790-26709946 -		AGATGACATCGGTGGGATGCGAGAACTTGCCAGCCAAGTACTACAAGATCGTATGT--AACT-TAC-AATC----------------------CTGAATGTTATAAAT-------------------ATCTA--TAAGTT--CCTTTGCGTTGCAGTGCTCTGAGATGATCTCCATCTATGGCAGTAGCATTAAGAACTTGGCCAA
droSim2	3r:26020734-26020890 -		AGATGACATCGGTGGGATGCGAGAACTTGCCAGCCAAGTACTACAAGATTGTAAGC--AACT-TAA-AATC----------------------CTAAATGTTATAAAT-------------------ATCTA--TAAGTT--CCTTTGCGTTGCAGTGCTCTGAGATGATCTCCATCTATGGCAATAGCATTAAGAACTTGGCCAA
droSec2	scaffold_4:5535506-5535662 -		AGATGACATCGGTGGGATGCGAGAACTTGCCAGCCAAGTACTACAAGATTGTAAGT--AACT-TAA-AATC----------------------CTAAATGTTATAAAT-------------------ATCTA--TAAGTT--CCTTGGCGTTGCAGTGCTCTGAGATGATTTCCATCTATGGCAATAGCATTAAGAACTTGGCCAA
droYak3	3R:27633526-27633682 -		AGATGACATCGGTTGGATGCGAGAACTTGCCAGCCAAGTACTACAAGATTGTAAGT--AACT-TGA-ATGT----------------------GTAAATGTTACAAAT-------------------ACCTA--TACGTT--CGCTTGCATTGCAGTGCTCTGAGATGATCTCCATCTATGGCAATAGCATTAAGAACTTGGCCAA
droEre2	scaffold_4820:1280265-1280420 +		AGATGACATCGGTGGGATGCGAGAACTTGCCAGCCAAGTACTACAAAATTGTAAGT--AACC-TGA-ATTC----------------------TTAAATGTTACATAT-------------------ATGTA--TCTA-T--CGATTGTGTTGCAGTGCTCCGAGATGATCTCCATCTATGGCAATAGCATTAAGAACTTGGCCAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

ACATGATCTCACAAGCCTGCGAGGACTTGCCAGCCAAGTACTATAGCATTGTAAGT--AGAT-ACA-TTCC------------CAATTCGATA-------TATTTCTGTATCTT----A-T---A-T-TATTTAA-------TGTTTATATTTTAGTGCTCGCGAATGATAACTATTTACGGCTACAGCATCATGCACCTGTCCGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....GATCTCACAAGCCTGCGAGGACTT..................................................................................................................................................................................	24	1	4.00	4	3	0	0	0	0	1
.....ATCTCACAAGCCTGCGAGGACTT..................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................GCGAATGATAACTATTTACGGCTACA...................	26	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................TGATAACTATTTACGGCTACAGCATCAT............	28	1	1.00	1	1	0	0	0	0	0
.......CTCACAAGCCTGCGAGGACTT..................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......TCTCACAAGCCTGCGAGGACTTGCCAGC............................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
....GATCTCACAAGCCTGCGAGGACTTGCCA..............................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.......CTCACAAGCCTGCGAGGACT...................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................TGCCAGCCAAGTACTATAGC...............................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................ATTTACGGCTACAGCATCA.............	19	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................GAATGATAACTATTTACGGCTAC....................	23	1	1.00	1	1	0	0	0	0	0
.CATGATCTCACAAGCCTGCGAGGACT...................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................CGCGAATGATAACTATTTACGGCTACA...................	27	1	1.00	1	1	0	0	0	0	0
...........CAAGCCTGCGAGGACTTGCC...............................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................GATAACTATTTACGGCTACAGCATC..............	25	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................TTACGGCTACAGCATCATG...........	19	1	1.00	1	1	0	0	0	0	0
..........ACAAGCCTGCGAGGACTTGCCAGCCAA.........................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
............................GCCAGCCAAGTACTATAGC...............................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0
.............AGCCTGCGAGGACTTGCCA..............................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
ACATGATCTCACAAGCCTGCGAG.......................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......CTCACAAGCCTGCGAGGACTTGC................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................AACTATTTACGGCTACAGCAT...............	21	1	1.00	1	1	0	0	0	0	0
.............AGCCTGCGAGGACTTGCCAGCCA..........................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
....GATCTCACAAGCCTGCGAGGA.....................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................ATGATAACTATTTACGGCTACA...................	22	1	1.00	1	1	0	0	0	0	0

droVir3

ACATGATCTCAGAGGCCTGTGAGAACTTGCCAGCCAAGTACTATAATATTGTAAGC--CAA------GAAC--AAGAC------ATCTCAATT-------TCATTTTGTATCTT----ACT---A-A-TTTGAAA----T--GGGTTTGATTTAAGTGCTCCGAGATGATCTCCATTTATGGCTTCAGCATTATGCATCTGTCTGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........AGAGGCCTGTGAGAACTTGCC...............................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTGTGAGAACTTGCCAGCCAA.........................................................................................................................................................................	21	1	4.00	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACATGATCTCAGAGGCCTGTGA........................................................................................................................................................................................	22	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........AGAGGCCTGTGAGAACTTGCCAGCC...........................................................................................................................................................................	25	1	3.00	3	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GGCCTGTGAGAACTTGCCAGCCAA.........................................................................................................................................................................	24	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CAGAGGCCTGTGAGAACT...................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGTGAGAACTTGCCAGCCAAGT.......................................................................................................................................................................	22	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CAGAGGCCTGTGAGAACTT..................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GATCTCAGAGGCCTGTGA........................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GAGGCCTGTGAGAACTTGCCAGCCAAGT.......................................................................................................................................................................	28	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............GGCCTGTGAGAACTTGCCAGC............................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GATCTCCATTTATGGCTTCA...................	20	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................GATGATCTCCATTTATGGCTT.....................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GCCTGTGAGAACTTGCCAGCCAA.........................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ATGATCTCAGAGGCCTGTGG........................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TGCTCCGAGATGATCTCC................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................CCGAGATGATCTCCATTTATGGC.......................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................ATGGCTTCAGCATTATGCAT........	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AAC--AAGAC------ATCTCAATT-------TCAT......................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................ATGATCTCCATTTATGGCT......................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ATGATCTCAGAGGCCTGTGAGA......................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................GATGATCTCCATTTATGGCTTC....................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................CCATTTATGGCTTCAGCAT...............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TTTGAAA----T--GGGTTTGATTTAAGA.................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GATCTCAGAGGCCTGTGAGAACTTGC................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CTCAGAGGCCTGTGAGAACTTGCC...............................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TTTGAAA----T--GGGTTTGATTT.....................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TCAGAGGCCTGTGAGAACTTGC................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TGCTCCGAGATGATCTCCA...............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TGATCTCCATTTATGGCTTCAGC.................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTGTGAGAACTTGCCAGCCA..........................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TGCTCCGAGATGATCTCCATTTATGGCT......................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TGCCAGCCAAGTACTATAAT...............................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CAGAGGCCTGTGAGAACTTGCCAGCC...........................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TCTCAGAGGCCTGTGAGAACTTG.................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CAGAGGCCTGTGAGAACTTGCCA..............................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CATGATCTCAGAGGCCTGTG.........................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CAGAGGCCTGTGAGAACTTGCCAGCCAA.........................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................GATGATCTCCATTTATGG........................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ATGATCTCAGAGGCCTGT..........................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACATGATCTCAGAGGCCTGTGAGA......................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TCTCAGAGGCCTGTGAGAAC....................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........AGAGGCCTGTGAGAACTTGCCA..............................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................GATGATCTCCATTTATGGC.......................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GCCTGTGAGAACTTGCCAGC............................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................GATGATCTCCATTTATGGCT......................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AGGCCTGTGAGAACTTGCCAGC............................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
................CTGTGAGAACTTGCCAGC............................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GATCTCCATTTATGGCTTCAGCATT..............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTAAGC--CAA------GAAC--AAGAC------ATCTCAATT-------..........................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GATCTCAGAGGCCTGTGAGAA.....................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CATGATCTCAGAGGCCTGT..........................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............GGCCTGTGAGAACTTGCCAGCCAAGT.......................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ATGATCTCCATTTATGGCTTCAGCAT...............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GCTTCAGCATTATGCATCTGTCT..	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AGGCCTGTGAGAACTTGCCAGCC...........................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AAA----T--GGGTTTGATTTAAG..................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GATCTCCATTTATGGCTT.....................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................ATCTCCATTTATGGCTTCAGCATCC.............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........AGAGGCCTGTGAGAACTTGCCAGCCAAGT.......................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..........................TTGCCAGCCAAGTACTATAA................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CAGAGGCCTGTGAGAACTTGCCAGC............................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AGAACTTGCCAGCCAAGT.......................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTGTGAGAACTTGCCAGCCAAGT.......................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GGCTTCAGCATTATGCATCTGTCTGA	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........AGAGGCCTGTGAGAACTTGCCAGC............................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

CAA----------------------CTTGTTA--------------------------------------------------------------------ATTTTGTG-------------------TGCCT--T--TTT--CTTATTTGTTGTAGTGCTCGGAAATGATCTCGATTTATGGCATCAGCATCATGCATCTGGCGGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................................................................................................................................................GCATCAGCATCATGCATCTGGCGGA	25	1	1.00	1	1	0
.............................................................................................................................................................GCTCGGAAATGATCTCGATTTATG.........................	24	1	1.00	1	1	0
.......................................................................................................................................................................................ATCAGCATCATGCATCTGGCGGA	23	1	1.00	1	1	0
..................................................................................................................................................................................ATGGCATCAGCATCATGCA.........	19	1	1.00	1	1	0

droWil2

ATATGACTGAGGTGGCTTGCGGTGATTTGCCAGCCAAATACTATAGCATTGTAAGT--AATT-TAT-GCTT----------------------GAAGAAGAGATAAAT---------AA-TTCAAATA--AT--TAACTC--TC--ATTTTTATAGTGCTCCGAAATGATCTCGATCTATGGCATCAGCATCAAACATTTGGCCGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
ATATGACTGAGGTGGCTTGC..........................................................................................................................................................................................	20	1	6.00	6	2	0	1	3	0
..ATGACTGAGGTGGCTTGCGGT.......................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0
ATATGACTGAGGTGGCTTGCGGT.......................................................................................................................................................................................	23	1	2.00	2	0	1	0	1	0
...................................................................................................................................................................AAATGATCTCGATCTATGGCATC....................	23	1	2.00	2	2	0	0	0	0
....................................................................................................................................................................AATGATCTCGATCTATGGCATC....................	22	1	1.00	1	0	0	0	1	0
......CTGAGGTGGCTTGCGGTGATTTGC................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.............GGCTTGCGGTGATTTGCCAGC............................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................ATGATCTCGATCTATGGC.......................	18	1	1.00	1	0	0	0	1	0
...................CGGTGATTTGCCAGCCAAATAC.....................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................CTCGATCTATGGCATCAGCA................	20	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................CTCGATCTATGGCATCAGC.................	19	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................ATGATCTCGATCTATGGCATCA...................	22	1	1.00	1	0	0	0	1	0
..ATGACTGAGGTGGCTTGC..........................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................TCTCGATCTATGGCATCAGC.................	20	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................AATGATCTCGATCTATGGCAT.....................	21	1	1.00	1	0	1	0	0	0
........GAGGTGGCTTGCGGTGATTTGCCAGCCAA.........................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................CTATGGCATCAGCATCAAAC..........	20	1	1.00	1	0	0	0	1	0
....GACTGAGGTGGCTTGCGGT.......................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................CTATGGCATCAGCATCAAACATTTGGC...	27	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................ATCTCGATCTATGGCATCAGC.................	21	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................GAAATGATCTCGATCTATGGCATCAGC.................	27	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................ATCTCGATCTATGGCATCAGCATCAAAC..........	28	1	1.00	1	0	0	1	0	0
.TATGACTGAGGTGGCTTGCGGT.......................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................TGATCTCGATCTATGGCATCAGC.................	23	1	1.00	1	0	0	0	0	1
....................GGTGATTTGCCAGCCAAATACT....................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
..ATGACTGAGGTGGCTTGCGGTGATTTG.................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0

dp5

AAATGACCTCGGTGGCCTGCGAGAACTTGCCAGCCAAGTACTACAGCATTGTAAGG--CTCC-TAA-GACC--CTCCCACCCCCAACC-------AGATGTTGTTATT-------------------TAATT--TATCTT--CC--CTCTCGGTAGTGCTCTAAAATGATCTCCATCTATGGCAACAGCTTTAAGCATCTGTCCGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..ATGACCTCGGTGGCCTGCGA........................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................CCATCTATGGCAACAGCTTTAAGC..........	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....GACCTCGGTGGCCTGCGAGAACT...................................................................................................................................................................................	23	1	2.00	2	0	1	0	1	0	0	0	0	0	0
........TCGGTGGCCTGCGAGAACTTGCCA..............................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.AATGACCTCGGTGGCCTGCGA........................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0
....................................................................................................................................................................AATGATCTCCATCTATGGCA......................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..................GCGAGAACTTGCCAGCCAA.........................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................TATCTT--CC--CTCTCGGTAGTGCTC.............................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........CGGTGGCCTGCGAGAACTTGCC...............................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......CCTCGGTGGCCTGCGAGAACTTGCC...............................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......CCTCGGTGGCCTGCGAGAACT...................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ATGATCTCCATCTATGGCA......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
AAATGACCTCGGTGGCCTGCGA........................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................AGCCAAGTACTACAGCATT............................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CATCTATGGCAACAGCTTTAAGC..........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............GGCCTGCGAGAACTTGCCAGCCAAGT.......................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...TGACCTCGGTGGCCTGCGAGAACTTGC................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....GACCTCGGTGGCCTGCGA........................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....ACCTCGGTGGCCTGCGAGAACTTG.................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............GGCCTGCGAGAACTTGCCAGC............................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GATCTCCATCTATGGCAACAG..................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GATCTCCATCTATGGCAAC....................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................ATCTCCATCTATGGCAACAGCTTTAAGC..........	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................AATGATCTCCATCTATGGC.......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...TGACCTCGGTGGCCTGCGA........................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................AAAATGATCTCCATCTATGG........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AAATGACCTCGGTGGCCTGCGAGAACTTGCCAGCCAAGTACTACAGCATTGTAAGG--CTCC-TAA-GACC--CTCCCACCCCCAACC-------AGATGTTGTTATT-------------------TAATT--TATCTT--CC--CTCTCGGTAGTGCTCTAAAATGATCTCCATCTATGGCAACAGCTTTAAGCATCTGTCCGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....GACCTCGGTGGCCTGCGA........................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0
..ATGACCTCGGTGGCCTGCGAGA......................................................................................................................................................................................	22	1	2.00	2	0	1	1	0	0	0
...........GTGGCCTGCGAGAACTTGCC...............................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...TGACCTCGGTGGCCTGCGAG.......................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..........GGTGGCCTGCGAGAACTTGC................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................TCTATGGCAACAGCTTTAA............	19	1	1.00	1	0	0	0	1	0	0
.........CGGTGGCCTGCGAGAACTTGCCA..............................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................CTATGGCAACAGCTTTAAGC..........	20	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................ATGGCAACAGCTTTAAGC..........	18	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................ATCTATGGCAACAGCTTTAAGC..........	22	1	1.00	1	0	1	0	0	0	0
AAATGACCTCGGTGGCCTGC..........................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................CTCCATCTATGGCAACAGC.................	19	1	1.00	1	0	0	1	0	0	0
......CCTCGGTGGCCTGCGAGAACTTGCCAG.............................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................CTCTAAAATGATCTCCATCTATGGC.......................	25	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................CATCTATGGCAACAGCTTTAAGCATC.......	26	1	1.00	1	0	0	0	0	0	1
......CCTCGGTGGCCTGCGAGAACTTGC................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..ATGACCTCGGTGGCCTGCGA........................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..............GCCTGCGAGAACTTGCCAGCCAAGTAC.....................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
................CTGCGAGAACTTGCCAGCCAAGT.......................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0

droAna3

AGATGACTTCCGTGGGCTGCGAGAACTTGCCGGCCAAGTACTACAAGATTGTAAGT--TCT--TAACCCTTAACTCATACGCAAAAC--A-------------TTATT--TATTAATTG-T---A--TTATTTAT--TATTACTATTATGTTGCAGTGCTCTGAGATGATCTCCATCTATGGAAAGAGCATCAACAATCTGGCCTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................GATCTCCATCTATGGAAAGAGC.................	22	1	10.00	10	0	0	0	0	8	2
.GATGACTTCCGTGGGCTGCGA........................................................................................................................................................................................	21	1	7.00	7	4	0	0	1	2	0
.GATGACTTCCGTGGGCTGC..........................................................................................................................................................................................	19	1	4.00	4	0	2	0	1	0	1
AGATGACTTCCGTGGGCTGCGA........................................................................................................................................................................................	22	1	3.00	3	2	0	0	0	1	0
.....................................................................................................................................................................ATGATCTCCATCTATGGAAAGAGC.................	24	1	3.00	3	0	1	0	0	2	0
....GACTTCCGTGGGCTGCGAGAA.....................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0
........................................................................................................................................................................ATCTCCATCTATGGAAAGAGC.................	21	1	2.00	2	0	0	1	0	1	0
....................................................................................................................................................................GATGATCTCCATCTATGGAAAGAGC.................	25	1	2.00	2	0	0	0	0	2	0
AGATGACTTCCGTGGGCTGC..........................................................................................................................................................................................	20	1	2.00	2	1	0	0	0	1	0
.............................................................................................................................................................GCTCTGAGATGATCTCCAT..............................	19	1	2.00	2	1	0	0	0	0	1
..ATGACTTCCGTGGGCTGCGA........................................................................................................................................................................................	20	1	2.00	2	1	0	0	0	1	0
.GATGACTTCCGTGGGCTGCGAG.......................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
....................................................................................................................................................................GATGATCTCCATCTATGGAAAGAGCAT...............	27	1	2.00	2	0	0	0	0	2	0
...................................................................................................................................................................AGATGATCTCCATCTATGGAAAGAGC.................	26	1	2.00	2	0	0	0	0	1	1
................................................................................................................................................................................CTATGGAAAGAGCATCAAC...........	19	1	1.00	1	0	0	0	0	1	0
..................GCGAGAACTTGCCGGCCAAGTA......................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................CCATCTATGGAAAGAGCATC..............	20	1	1.00	1	0	1	0	0	0	0
AGATGACTTCCGTGGGCTGCGAGAA.....................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................CTCCATCTATGGAAAGAGCAT...............	21	1	1.00	1	0	0	0	0	1	0
.............GGGCTGCGAGAACTTGCCGGCCAAG........................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.GATGACTTCCGTGGGCTGCGAGA......................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....................GAGAACTTGCCGGCCAAG........................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................GAGATGATCTCCATCTATGGAAAGAGC.................	27	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................CTATGGAAAGAGCATCAACAATCTGG....	26	1	1.00	1	0	0	0	0	0	1
.......TTCCGTGGGCTGCGAGAACTTGCCG..............................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................ATGATCTCCATCTATGGAAAGAG..................	23	1	1.00	1	0	0	0	1	0	0
................................................................................................................................................................................CTATGGAAAGAGCATCAACAATCT......	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................GCTCTGAGATGATCTCCATC.............................	20	1	1.00	1	0	1	0	0	0	0
AGATGACTTCCGTGGGCTG...........................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................CTATGGAAAGAGCATCAACAAT........	22	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................TATGGAAAGAGCATCAACA..........	19	1	1.00	1	0	0	0	1	0	0
....................GAGAACTTGCCGGCCAAGT.......................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................ATCTCCATCTATGGAAAGAGCATCAAC...........	27	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................CATCTATGGAAAGAGCATCAACAAT........	25	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................ATCTATGGAAAGAGCATCAACAATCT......	26	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................TCTATGGAAAGAGCATCAACA..........	21	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................GATCTCCATCTATGGAAAGAGCATCAAC...........	28	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................CTATGGAAAGAGCATCAACA..........	20	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................AGATGATCTCCATCTATGGAAAGA...................	24	1	1.00	1	0	0	0	0	1	0
.GATGACTTCCGTGGGCTGCGAGAACT...................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........CCGTGGGCTGCGAGAACTTGCCGGCC...........................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................GATCTCCATCTATGGAAAGA...................	20	1	1.00	1	0	0	0	0	1	0
........TCCGTGGGCTGCGAGAACTTGCCGG.............................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...................CGAGAACTTGCCGGCCAAGT.......................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..................GCGAGAACTTGCCGGCCAA.........................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................ATGGAAAGAGCATCAACAAT........	20	1	1.00	1	0	0	0	0	1	0
...TGACTTCCGTGGGCTGCGAGAACT...................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................GATGATCTCCATCTATGGAAAGAG..................	24	1	1.00	1	0	0	0	0	1	0
....GACTTCCGTGGGCTGCGA........................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.GATGACTTCCGTGGGCTCGA.........................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	1	0

droBip1

AGATGACTTCTGTGGGCTGCGAGAACTTGCCGGCCAAGTACTACAAGATTGTAAGT--TCC--TAAC--------------------CGAAAAGTGTATGACAGCAT--------------------GGCTT--AA-TTT--CTGACATCTTGCAGTGCTCTGAGATGATCTCCATCTATGGAAAGAGCATCATCAATCTGGCCTC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGATGACATCGACGGCCTGCGAGAACTTGCCAGCCAAGTACTACAAGATTGTAAGT--TGTGATAAC--------------------CCGATA-------ATATACCATTTCTTTAAAA-T---T--TAATTAAA--TAT--TTCTCTTTTTTCAGTGCTCTGAGATGATCTCCATTTATGGCAACAGCATCAAGAACCTGGCCAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGATGACATCCGTGGGGTGCGAGAACTTGCCCGCCAAGTACTACAAAATTGTAAGATTGATT-TAT-ATTA----------------------A----TC---TAAAC---------AC-CTCA---AGCAG--TACTTT--CTTATCATCCGTAGTGCTCTGAGATGATCTCCATCTACGGCAACAGCATTAAGAACCTGGCCAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

A--TGACATCGGTGGCATGCGAGATCTTGCCAGCCAAGTACTACAAGATTGTAGGACCTATT-TAC-ATTT----------------------CTATGTGTTACGAAT-------------------ACTTA--TAAT-T--CTCCCATTTTTTAGTGCTCCGAGATGATCTCCATCTATGGCAACAGCATTAAGAACCTGTCCAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGATGACATCGGTGGCATGCGAGAACTTGCCAGCCAAGTACTATAAGATTGTAAGA--CTTT-TTG-TAT-------------------AT--ATATTTATTACAAAT-------------------TCTTA--TAAT-T--CTGTTATTTTGTAGTGCTCTGAGATGATCTCCATTTATGGCCACAGCATTAAGAACCTTTCCAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGATGACATCGGTGGCCTGCGAGACCTTGCCAGCCAAGTACTACAAGATTGTAAGG--TTACATAT---CC----------------------CCTTATGGAAGAGAA-------------------ATCTT--TAACTA--TC--TTCATTTCAGTGCTCTGAGATGATCTCCATCTATGGCAACAGCCTTAAGAACTTGGCTCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGATGACATCGCTGGCCTGCGAGAACTTGCCAGCCAAGTACTACAAGATTGTAAGA--T----TAC-ATTT----------------------GTTTATATAAGCAAA-------------------ATCTG--TAACTC--TTCTTATTTTCCAGTGCTCTGAGATGATCTCCATCTATGGCAACAGCATCAAGAACCTGGCCAA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAATGACATCGACGGCTTGCGAGACCTTGCCAGCCAAGTACTACAAGATTGTAAGAGTCCAT-TAT-ATTT----------------------GTTTATATAACAAA--------------------GGCTA--TAAGTC--TTCCTTACTTACAGTGCTCTGAGATGATCTCCATCTATGGCAACAGCATTAAGAACCTGTCCAA	Size	Hit Count	Total Norm	Total
No Reads

dm3

AGATGACATCGGTGGGATGCGAGAACTTGCCAGCCAAGTACTACAAGATCGTATGT--AACT-TAC-AATC----------------------CTGAATGTTATAAAT-------------------ATCTA--TAAGTT--CCTTTGCGTTGCAGTGCTCTGAGATGATCTCCATCTATGGCAGTAGCATTAAGAACTTGGCCAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.GATGACATCGGTGGGATGC..........................................................................................................................................................................................	19	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	1	0	0	0	0	0	0	0
........TCGGTGGGATGCGAGAACTTGCCAGC............................................................................................................................................................................	26	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....GACATCGGTGGGATGCGAGAACT...................................................................................................................................................................................	23	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GATGACATCGGTGGGATGCGAGAACT...................................................................................................................................................................................	26	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................TGCCAGCCAAGTACTACAAGATCTGC.........................................................................................................................................................	26	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
AGATGACATCGGTGGGATGC..........................................................................................................................................................................................	20	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........CGGTGGGATGCGAGAACT...................................................................................................................................................................................	18	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................TCTATGGCAGTAGCATTAAGAACTTGGC...	28	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
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AGATGACATCGGTGGGAT............................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0
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....................................................................................................................................................................GATGATCTCCATCTATGGCAGT....................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
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......................GAACTTGCCAGCCAAGTA......................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ATGCGAGAACTTGCCAGCCA..........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GATGACATCGGTGGGATGCGT........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CGGTGGGATGCGAGAACTTGCA...............................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................ATGGCAGTAGCATTAAGAACTT......	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................ATCTATGGCAGTAGCATTA.............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GCCAAGTACTACAAGATCTG..........................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGATGACATCGGTGGGATGCGAGAACTTGCCAGCCAAGTACTACAAGATTGTAAGC--AACT-TAA-AATC----------------------CTAAATGTTATAAAT-------------------ATCTA--TAAGTT--CCTTTGCGTTGCAGTGCTCTGAGATGATCTCCATCTATGGCAATAGCATTAAGAACTTGGCCAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................................................................................ATGATCTCCATCTATGGC.......................	18	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................ATAGCATTAAGAACTTGGCC..	20	1	3.00	3	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
....................................................................................................................................................................GATGATCTCCATCTATGGC.......................	19	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GGGATGCGAGAACTTGCCAGCC...........................................................................................................................................................................	22	1	2.00	2	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........CGGTGGGATGCGAGAACTTGCCAGCC...........................................................................................................................................................................	26	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ATGCGAGAACTTGCCAGCCAA.........................................................................................................................................................................	21	1	2.00	2	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................AGATTGTAAGC--AACT-TAA-A..........................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......ATCGGTGGGATGCGAGAACT...................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................ATAGCATTAAGAACTTGGCCAA	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGCGAGAACTTGCCAGCCAA.........................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................ATGCGAGAACTTGCCAGCCA..........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........GTGGGATGCGAGAACTTGCCAGCCAA.........................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GGGATGCGAGAACTTGCC...............................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GGGATGCGAGAACTTGCCAGCCAA.........................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AGATGACATCGGTGGGAT............................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GGATGCGAGAACTTGCCAGCCAA.........................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......CATCGGTGGGATGCGAGAACT...................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................GATGATCTCCATCTATGGCAATAG..................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GGGATGCGAGAACTTGCCAGCCAAG........................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................ATGGCAATAGCATTAAGA..........	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AGCATTAAGAACTTGGCCA.	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..ATGACATCGGTGGGATGC..........................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................ATGCGAGAACTTGCCAGCC...........................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GGGATGCGAGAACTTGCCAGCCAG.........................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TCGGTGGGATGCGAGAACT...................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................ATGGCAATAGCATTAAGAACTT......	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...TGACATCGGTGGGATGCGAGAACT...................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................ATCTATGGCAATAGCATTAAGAACTTGGC...	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....ACATCGGTGGGATGCGAGAACTTGC................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CGGTGGGATGCGAGAACTTGCC...............................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CGAGAACTTGCCAGCCAA.........................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TGACATCGGTGGGATGCGAGAACTTGCC...............................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...TGACATCGGTGGGATGCGAGAA.....................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......CATCGGTGGGATGCGAGAACTTGCCAGC............................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GGCAATAGCATTAAGAACTTGGCCA.	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................GAGATGATCTCCATCTATG.........................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TGATCTCCATCTATGGCAATAG..................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...............GATGCGAGAACTTGCCAGCCAA.........................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................ATGCGAGAACTTGCCAGCCAAGT.......................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
AGATGACATCGGTGGGATGCGAGAAC....................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droSec2

AGATGACATCGGTGGGATGCGAGAACTTGCCAGCCAAGTACTACAAGATTGTAAGT--AACT-TAA-AATC----------------------CTAAATGTTATAAAT-------------------ATCTA--TAAGTT--CCTTGGCGTTGCAGTGCTCTGAGATGATTTCCATCTATGGCAATAGCATTAAGAACTTGGCCAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................GATGATTTCCATCTATGGCA......................	20	1	2.00	2	1	0	1	0
..........GGTGGGATGCGAGAACTTGCC...............................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.............................................................................................................................................................GCTCTGAGATGATTTCCAT..............................	19	1	1.00	1	0	0	1	0
AGATGACATCGGTGGGATGCG.........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
............................................................................................................................................................TGCTCTGAGATGATTTCCATCTATGGC.......................	27	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................AATAGCATTAAGAACTTGGC...	20	1	1.00	1	0	0	1	0
...TGACATCGGTGGGATGCGAGAACTTGCC...............................................................................................................................................................................	28	1	1.00	1	0	1	0	0
..............GGATGCGAGAACTTGCCAGCCAAGT.......................................................................................................................................................................	25	1	1.00	1	0	1	0	0
....GACATCGGTGGGATGCGAGAACTTGC................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
................ATGCGAGAACTTGCCAGCCAAG........................................................................................................................................................................	22	1	1.00	1	1	0	0	0
.......ATCGGTGGGATGCGAGAACTTGCCAGC............................................................................................................................................................................	27	1	1.00	1	0	1	0	0
......................................................................................................................................TAAGTT--CCTTGGCGTTGCAG..................................................	20	1	1.00	1	0	0	0	1
........TCGGTGGGATGCGAGAACT...................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
...............GATGCGAGAACTTGCCAGCCAA.........................................................................................................................................................................	22	1	1.00	1	0	0	1	0
..........GGTGGGATGCGAGAACTTGC................................................................................................................................................................................	20	1	1.00	1	0	0	0	1
..................GCGAGAACTTGCCAGCCAAGTA......................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.GATGACATCGGTGGGATGCGAGA......................................................................................................................................................................................	23	1	1.00	1	1	0	0	0
........................................................................................................................................................................................ATAGCATTAAGAACTTGGCCA.	21	1	1.00	1	0	1	0	0
...........................TGCCAGCCAAGTACTACAAG...............................................................................................................................................................	20	1	1.00	1	1	0	0	0
.......ATCGGTGGGATGCGAGAACTTGCCA..............................................................................................................................................................................	25	1	1.00	1	0	1	0	0

droYak3

AGATGACATCGGTTGGATGCGAGAACTTGCCAGCCAAGTACTACAAGATTGTAAGT--AACT-TGA-ATGT----------------------GTAAATGTTACAAAT-------------------ACCTA--TACGTT--CGCTTGCATTGCAGTGCTCTGAGATGATCTCCATCTATGGCAATAGCATTAAGAACTTGGCCAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................GATGATCTCCATCTATGGCA......................	20	1	12.00	12	0	11	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................GATCTCCATCTATGGCAAT....................	19	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................GATGATCTCCATCTATGGC.......................	19	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
...............GATGCGAGAACTTGCCAGCCAA.........................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GATCTCCATCTATGGCAATAGC.................	22	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.GATGACATCGGTTGGATGCGAGAACT...................................................................................................................................................................................	26	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
............TTGGATGCGAGAACTTGCCAGCC...........................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ATGATCTCCATCTATGGCA......................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................GATGATCTCCATCTATGGCAATAGC.................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..........GGTTGGATGCGAGAACTTGCCAGCCAA.........................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................TGCGAGAACTTGCCAGCCAAGT.......................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.GATGACATCGGTTGGATGCGA........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.GATGACATCGGTTGGATGCGAGAAC....................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........GTTGGATGCGAGAACTTGCC...............................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....GACATCGGTTGGATGCGAGAACTTGCC...............................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........CGGTTGGATGCGAGAACTTGCCAGC............................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................ATGATCTCCATCTATGGC.......................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CAATAGCATTAAGAACTTG.....	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
AGATGACATCGGTTGGATGC..........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
AGATGACATCGGTTGGATGCGAGAACT...................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......ATCGGTTGGATGCGAGAACTTGCCAGCCA..........................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............TGGATGCGAGAACTTGCCAGCCAAGTA......................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................ATAGCATTAAGAACTTGGC...	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
..............GGATGCGAGAACTTGCCAGC............................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............TTGGATGCGAGAACTTGCCAGCCAAGT.......................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......CATCGGTTGGATGCGAGA......................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.GATGACATCGGTTGGATGC..........................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............GATGCGAGAACTTGCCAGCCAAGTA......................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.GATGACATCGGTTGGATGCGAGAACTTG.................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........CGGTTGGATGCGAGAACTT..................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......ATCGGTTGGATGCGAGAA.....................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........CGGTTGGATGCGAGAACTTGCC...............................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......CATCGGTTGGATGCGAGAACTTGCC...............................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.GATGACATCGGTTGGATGCGAG.......................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................GCGAGAACTTGCCAGCCAAG........................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.GATGACATCGGTTGGATGCGAGA......................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................GCGAGAACTTGCCAGCCAA.........................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GCAATAGCATTAAGAACTTGGC...	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GATCTCCATCTATGGCAATA...................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..ATGACATCGGTTGGATGC..........................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.GATGACATCGGTTGGATG...........................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................ATCTATGGCAATAGCATTAAGAA.........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.GATGACATCGGTTGGATGCGAGAACTT..................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.GATGACATCGGTTGGATGCGAGAA.....................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........GTTGGATGCGAGAACTTGCCAGCCAA.........................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
AGATGACATCGGTTGGATGCGAGAAC....................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...TGACATCGGTTGGATGCGAGAACT...................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......CATCGGTTGGATGCGAGAACTTGCCAGC............................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................AATAGCATTAAGAACTTGGC...	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..ATGACATCGGTTGGATGCGAGAACT...................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TGCTCTGAGATGATCTCCATCT............................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........CGGTTGGATGCGAGAACTTGCCA..............................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................GATGATCTCCATCTATGGCAATAG..................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................GCTCTGAGATGATCTCCAT..............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...TGACATCGGTTGGATGCGAGAA.....................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......CATCGGTTGGATGCGAGAACTTGC................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............TGGATGCGAGAACTTGCCA..............................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AGATGACATCGGTGGGATGCGAGAACTTGCCAGCCAAGTACTACAAAATTGTAAGT--AACC-TGA-ATTC----------------------TTAAATGTTACATAT-------------------ATGTA--TCTA-T--CGATTGTGTTGCAGTGCTCCGAGATGATCTCCATCTATGGCAATAGCATTAAGAACTTGGCCAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....GACATCGGTGGGATGCGAGAACTTGCCAGC............................................................................................................................................................................	30	1	18.00	18	0	0	0	0	0	0	18
.GATGACATCGGTGGGATGCGAGAACTT..................................................................................................................................................................................	27	1	6.00	6	0	0	0	0	1	0	5
....................................................................................................................................................................GATGATCTCCATCTATGGCAATAGC.................	25	1	4.00	4	1	1	0	0	0	2	0
.GATGACATCGGTGGGATGCGAGAACT...................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	1	1	0
......................................................................................................................................................................................CAATAGCATTAAGAACTTGGC...	21	1	1.00	1	1	0	0	0	0	0	0
.............GGGATGCGAGAACTTGCCAGCCAA.........................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................A--TCTA-T--CGATTGTGTTGCAGAA................................................	22	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................ATGTA--TCTA-T--CGATTGTGTTGCAGA.................................................	25	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................ATGGCAATAGCATTAAGAACTT......	22	1	1.00	1	0	0	0	0	1	0	0
................ATGCGAGAACTTGCCAGCCAAGTA......................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
............TGGGATGCGAGAACTTGCCAGCCAAGTA......................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................CTATGGCAATAGCATTAAGAACTT......	24	1	1.00	1	1	0	0	0	0	0	0
.GATGACATCGGTGGGATGCGA........................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................GATCTCCATCTATGGCAATAG..................	21	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................AATAGCATTAAGAACTTGG....	19	1	1.00	1	0	0	0	0	1	0	0
.GATGACATCGGTGGGATGCGAGAA.....................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................ATAGCATTAAGAACTTGGC...	19	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................ATAGCATTAAGAACTTGGCC..	20	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................ATGTA--TCTA-T--CGATTGTGTTGCAGT.................................................	25	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................GATGATCTCCATCTATGGCAAT....................	22	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................ATGGCAATAGCATTAAGAACT.......	21	1	1.00	1	1	0	0	0	0	0	0
AGATGACATCGGTGGGATGC..........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................GATGATCTCCATCTATGGCAATA...................	23	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................GATCTCCATCTATGGCAATAGC.................	22	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................TATGGCAATAGCATTAAGAACTT......	23	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................GATGATCTCCATCTATGGCA......................	20	1	1.00	1	1	0	0	0	0	0	0
.GATGACATCGGTGGGATGCGAGAAC....................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................A--TCTA-T--CGATTGTGTTGCAG..................................................	20	1	1.00	1	0	0	0	0	0	1	0
...............GATGCGAGAACTTGCCAGCCAA.........................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................GATCTCCATCTATGGCAAT....................	19	1	1.00	1	0	0	0	1	0	0	0
AGATGACATCGGTGGGAT............................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................................................TCTATGGCAATAGCATTAAGAAC........	23	1	1.00	1	1	0	0	0	0	0	0
....GACATCGGTGGGATGCGAGAACTTGC................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
..................GCGAGAACTTGCCAGCCAAGT.......................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................AATAGCATTAAGAACTTGGC...	20	1	1.00	1	1	0	0	0	0	0	0

dmo_2132

scaffold_6540:30212444-30212509 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads