ID:

dmo_2121

 Coordinate:

scaffold_6540:29769051-29769201 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.3 -31.1 -31.1

Flybase annnotation

exon [dmoj_GLEANR_10516:9]; CDS [Dmoj\GI10605-cds]; intron [Dmoj\GI10605-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTGTCTGCATGGCCAAAATGTCGGCAGCCGGTTCCCCAGAGGAGGAGGTTGTAAGTACCAGTCAAAGCGGCTTATAGCCTAAAGCCTAAGCTCTGGCGTATGTGTCACTTCTCATGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGTTGAATGCGTGTGTGTGTGTGCATGTGTGCACTGTGTATTGCCCGTAATTGGCGCCAATTTCACTGTGGCCAGTTGAATATTTTGGCGACTCATAAGCA
**************************************************...(((((((((....(((((((........)))))..((((((.((((((....(((....((((...((....)).))))...)))...)))))).))))))..((((((((........)))))))))))))).))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V056
head
.............................................................TCAAAGCGGCTTATAGCCTAAAGCC..................................................................................................................................................................... 25 0 1 1.00 1 1 0 0
...............................................................................................................................................................................................................................AGTTGAATATTTTGGCGAC......... 19 0 1 1.00 1 1 0 0
................................................................................................................................................................................................................................GTTGAATATTTTGGCGACT........ 19 0 1 1.00 1 1 0 0
................................................................................................CGTATGGGTCACTGCTAATG....................................................................................................................................... 20 3 3 0.33 1 0 0 1
...............................................................................................................................................GTGCGAGAGTTTAATGCG.......................................................................................... 18 2 7 0.29 2 0 2 0
.....................................................................................................................................................................................................................CACTGTGTCCAATTGAATA................... 19 2 4 0.25 1 1 0 0
...............AAACAGCGGCAGCCGGTTCC........................................................................................................................................................................................................................ 20 3 18 0.06 1 1 0 0
..........................................................................................................................................................................GTCCATCTGTGCACTGGGT.............................................................. 19 3 20 0.05 1 0 1 0

Anti-sense strand reads

GACAGACGTACCGGTTTTACAGCCGTCGGCCAAGGGGTCTCCTCCTCCAACATTCATGGTCAGTTTCGCCGAATATCGGATTTCGGATTCGAGACCGCATACACAGTGAAGAGTACACACGCACACACACACACACACACACACACACTCTCAACTTACGCACACACACACACGTACACACGTGACACATAACGGGCATTAACCGCGGTTAAAGTGACACCGGTCAACTTATAAAACCGCTGAGTATTCGT
**************************************************...(((((((((....(((((((........)))))..((((((.((((((....(((....((((...((....)).))))...)))...)))))).))))))..((((((((........)))))))))))))).))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V049
head
 M060
embryo
............................GCCAAGGGGTCTCCTCCTCCA.......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................TGGGCATTGACCGCGGTTA........................................ 19 2 2 0.50 1 0 1 0 0
..................................GGGTGTCTTCCTCCAACACT..................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 1 0
..............................................................................................................................................................CGCACACACACACACGTACAC........................................................................ 21 0 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:29769001-29769251 + dmo_2121 CT---------------------GTCTGCATGGCCAAAATGTCGGCAGCCGGTTCCCCAGAGGAGGAGGTTGTAAGTACCAGTC-----------------------------------------------------------------------------A----------------AAGCGGCTTATAGCCTAAAGCCTAAGCTCTGGCGTATGTGTC--------ACTTC-TCA--TGT----------------------GTGCGTGTGTGTG------T-------------------GT---------------------G-TGTGTGTGTGTGT--------------------GAGAGTTGA--AT--------G----CGT------------GTGTG--------T--GTGTGCATGTG-----------------------------------------------------------------T--------------GCACTGTGTATTGCCCGT---------AATTGGCGCCAATTTCACTGTGGCCA-------GTTGAATATTTTGGCG---------------------------ACTCATAAGCA
droVir3 scaffold_13047:12012022-12012216 - GT---------------------GCCTGCATGGCCAAAATGTCGGCAGCTGGTGCGCCCGAGGAGGAGCAGGTAAGTACCAGCC-----------------------------------------------------------------------------A----------------AAGCGGCTTATAAGCTTAAGCCTCAGCTCAAGCGTATGTGTT--------GCTG-------TTC---GT------GAG---T------------------------------------------------------------------G---T-------------------------------------------GCGTGTGTGTGC--------------G------CG-------------------------------------------------------------------------------------------------------CTGTACTTTGTTCGT---------AATTGGCACCAATTTCA----------------GTTGAATATTTTTGCG---------------------------ACTCATAAGCA
droGri2 scaffold_14624:3498436-3498604 - AA---------------------GG--------------------------------------ATCAGTCAATAATGCTG-----------ACAT--CAAATTGATGCCAATCTGACGGCTCTGTCATCTCA-------------------------------------------------------------------------------------------------CAAT-TCA--TGTG------------------A--G--TGTGTGTGTGT----GTGTGTGTATG--TATGTGT-GTGT-------------------------------------------------------------------------TTGTGTGTGTGTGAG----TGTGT--T--------T--GTCTGT----T--------------------------TTTATGCGGGTT------------------------GTGTGCGT-------------------------------------TTTT-----CAATTTCA--------------------------------------------------------------------CT
droWil2 scf2_1100000004943:2637853-2638139 + GT---------------------GCTTGTATGGCCAAAGTGACGTCGTCTGGTGCCCCCGAGGAGGAGCATGTAAGTACCCGTTTGTCCCTACAACAATTTCTAAAACATAGTGGGAC----------------------GAGAAATGAGGGGAGTAGTTCTTAGTTCACCTAAAAGAAAGCCGCTTATGGGCTT----------------------AGAGCTCTTTG-----------CATCTA-TGGTAG-----------------TGTGTGCC--------TCTGTCTCTG--TGTGT-GTGT------------GTGTGTT----------TGTGTGGGAACGTAATTTTCTGGACC--------------------------------------------------------C------------------------------------------------------------------------------------------------------------TCTGCTCCTTTTCCTTTCCATTCTCATCCTCGTC--------GTTGAAGTCATCG-------------------------------------TCGA
dp5 2:4789060-4789293 + GT---------------------GCCTGCATGGCCAAAGTGGCGGCCTCCGGTGCCCCCGAGGAGGAGCATGTAAGTACC-----------ACAG--AAGGCTAACACAAAGCGAGAATGTTGGCCACCTGAATGAAGCAGCTAAAGAAGGAAAG------------------AAAGAAAGCCGCTTATGTGCCT----------------------AAAACTCTTTGCC---C---A-GCC---AT------GCA---T------------------------------------------------------------------C---T-------------------------------------------ACGTATCCGTGT--------------G------CG----------------------------------------------------------G------------------------TCT--------------ACCCTGCGGCTCGGTCGT---------AAATTGCAC-----------------------------------------CTCCTTTG------------------GATCGAAAACG
droPer2 scaffold_19:485857-486090 + GT---------------------GCCTGCATGGCCAAAGTGGCGGCCTCCGGTGCCCCCGAGGAGGAGCATGTAAGTACC-----------ACAG--AAGGCTAACACAAAGCGAGAATGTCGGCCACGTGAATGAAGCAGCTAAAGGAGGAAAG------------------AAAGAAAGCCGCTTATGTGCCT----------------------AAAACTCTTTGCC---C---A-GCC---AT------GCA---T------------------------------------------------------------------C---T-------------------------------------------ACGTATCCGTGT--------------G------CG----------------------------------------------------------G------------------------TCT--------------ACTCTGGGGTTCGGTCGT---------AAATTGCAC-----------------------------------------CTCCTTTG------------------GATCGAAAACG
droAna3 scaffold_12929:1384606-1384692 - TC---------------------TCATGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TGTGTGTGTGT----GAGTGTGTGTG--TGTGTGT-GTGA-------------------------------------------------------------------------GTGTGTGTGTGTGCCCAAGTT---------------------------------------------------------------------------------------------------------------TTGTGTATTTTTCGG---------GAATGGC--------------------------------------------------------------------------------
droBip1 scf7180000396712:1708826-1708903 - GT---------------------GTATGTGTATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--GTATGTGTATGTG-------------------------TAT---------------------G-TGTATGTGTATGT--------------------GTATGGTGT--AT--------G----TGT------------ATGTG--------T--ATGTGTATATG-----------------------------------------------------------------T--------------G-----------------------------------------------------------------------------------------------------------------
droKik1 scf7180000299277:117385-117466 - CTGT----------CA--------TGTGTGTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG---------------C---GT--GT--G----TGTGTGTG--------TGTGTGTG--TGTGT---GTGT------------------------GTGTGTGT---------------------------GT--------------G----TGTGT--G------TGTGTG--------T--GTGTGC----T-----------------------------------------------------------------T--------------G-----------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453882:768504-768645 + TG----------------------TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--GT--GTGTGTGTG--------------TG---------TGT---------------------G-AGTTTGCGTGTGT--------------------GATTCGAGA------------------GTGT--G------TCTGTG--------T--GTGTGT--CTGACAGCTGTCAAGGTGTTGACATC---GG----------------------------------------------AAATTG------------------CGTAGGAAA-------------------------------------------------TTTCAAAAGTGCCTGAC-ATTTCGGGCATTTTTGAGCG
droEle1 scf7180000491006:765157-765290 - CT---------------------TCGCATGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TGTGTGTGTGT----GTGTGTGTGTG--AGTGTGT-GTGT-------------------------------------------------------------------------GTGTGTAGGTGT---CAAGGG---------------------------T-----------------GCTGTCCTGGCC----------GGGAAACGAAAGCCCCACCACCA--------CCCT------------GGGCGGGA-----------------------------------------------TTGCATATTTTGCTG---------------------------CCTCA--CGAA
droRho1 scf7180000779876:153657-153808 + AC---------------------GTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------ACTTT-TCA--CACATG-CAGCAGT---GT--GT--G----TGTGTGTG--------------TG---------TGCGAGA---GGTTTGAGTGTGTT----------AGT---------------------------GCG------------------AGTGT--G------CATATG--------T--ATGTGT----T--TACAGTTA-------------GCGGGC----------GCCAAACCAAG--------------------------------------------------------------------------G--------TGTCGCC----------------GTGCACCCAAAAT----CGTTT-----CAGCGTGAATA
droBia1 scf7180000302193:855944-856043 - GCTG--CGGTGTGT---------------GTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-CTG--TGTGTG-TGTGTGTGT-GT--G--------TGTGTGTGTGTGTGTGTGTGT--GTGT--GT---------------------GTGTG-T-G------T-----------------------------GT--------------G----TGTGT----------GT--GTGTGTGTGTGTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414555:16948-17007 + CG----------------------TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--GT--GTGTGTGTG--------------TG---------TGT---------------------G-TGTGTGTGTGTGT--------------------GTGTGGTGA------------------GTGC--T------CGAGTG--------T--GTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409061:257736-257864 + TGCT----------ACTGTTCGTGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--G--TGTGTGTGTG--------TGTGTGTGTG--TGTGT-GTGT------------GTGTGTT----------AGTGTG--------------------GTACGGCA------------------GTGT--G------TGTGTG--------T--GCGTGC----T--------------------------------------------------------------GAGTAGGCTCTTGAGCCG------------------CACAACACT-------------------------------------------------TCCGGTTG-----------------------CCACTTG
dm3 chr3L:10799841-10800041 - TG----------------------TGTGTGTGCCCAAAAGG-CATTTCCCGGCGC-----------AGT--GAGAAAATCAATC-----------------------------------------------------------------------------AAAA---------------TCGATTTAAAAGCACAACTTCCG----TTGCGGATTTACC--------AATGT-CCG--TGTGT--------------------G--CCCGGGTGTG------T------GCG--TGTGTGT-GTGGGTGAATGTTTGCCATTGGG----------CT---------------------------TGTG------------------GGTGT--A------TGTATG--------G--GTGTGT----G--TATTGTGA-------------------------------------------------------------------------------------------------AAATGTTACCAATTTATT--------TG----------------------------------------------------------T
droSim2 3r:14127107-14127223 - GC---------------------TTGTGCGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---GT--GA--G----TGTGTGTG--TGTGTGTGTGT--GTGT--GTGT-GT---------------------GT-G------T-------------------------------------------GTG----TGTGT----------GT--GTGGACGTATGTGAGT------T-----------------GGCATA---GA----------------------------------------------AAATTA------------------TTTGCTACT-------------------------------------------------TTTAATTA-----------------------GTGCCAA
droSec2 scaffold_24:231369-231484 - AGCGCACGGCATAT---------------GTA--------------------------------------------------------------------------------------------------------------------------------------------------------CTCACGTATGT----------------------ATTGTCTCCT-----C-CCC--TGC---AT------GTA-TATGTGTGT--GTGTGTGTG--------------TG---------AGGGT----------------------GAGGGTGAGGGT--------------------GTTTTGCGG------------------GTGT--G------TGCGTG--------T--GTATCC----T--------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------
droYak3 X:6555407-6555550 + GCAC--CGCCATAC-----------GTGTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------TGCCGTTT---AC------ATG-----T--GTGTGTGTGTGTGT-------------------------GA---------------------G-TGTGTGTGTGCGT--------------------GAGGGGGTTAAAT--------------GC------------GAGTG----CATGT--AAAT----GTT-----------------GGCGCCGTGGCCAA-------------ACAATA-------------------------------------------------------------GCCGCTA--------------------------GTTAGTTTGCTG---------------------------GCCA--GTTGA
droEre2 scaffold_4690:9760258-9760417 - CT---------------------CTGTCGGTGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGC-CTC--TGTGT-GC---------------------GTGCGTGCG------A--------GTGT--GTGT-CT---------------------GT-GTGTGTCGTTCTG--------------------TTGCTGTTGTGT--------------GT------------GTGCG----TGCGT--GTGC----ATT-----------------GCCACTGTGTGCGTGCGAGTAG------------------------TGC--------------CTACTGCGGCCGAGTCGA---------GTGTTGCCT-----------------------------------------GTGCTTC-----------------------AAAATCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CT---------------------GTCTGCATGGCCAAAATGTCGGCAGCCGGTTCCCCAGAGGAGGAGGTTGTAAGTACCAGTC-----------------------------------------------------------------------------A----------------AAGCGGCTTATAGCCTAAAGCCTAAGCTCTGGCGTATGTGTC--------ACTTC-TCA--TGT----------------------GTGCGTGTGTGTG------T-------------------GT---------------------G-TGTGTGTGTGTGT--------------------GAGAGTTGA--AT--------G----CGT------------GTGTG--------T--GTGTGCATGTG-----------------------------------------------------------------T--------------GCACTGTGTATTGCCCGT---------AATTGGCGCCAATTTCACTGTGGCCA-------GTTGAATATTTTGGCG---------------------------ACTCATAAGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................TC-----------------------------------------------------------------------------A----------------AAGCGGCTTATAGCCTAAAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------GTTGAATATTTTGGCG---------------------------AC.........1911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATATTTTGGCG---------------------------ACT........1911.001100000
droVir3
GT---------------------GCCTGCATGGCCAAAATGTCGGCAGCTGGTGCGCCCGAGGAGGAGCAGGTAAGTACCAGCC-----------------------------------------------------------------------------A----------------AAGCGGCTTATAAGCTTAAGCCTCAGCTCAAGCGTATGTGTT--------GCTG-------TTC---GT------GAG---T------------------------------------------------------------------G---T-------------------------------------------GCGTGTGTGTGC--------------G------CG-------------------------------------------------------------------------------------------------------CTGTACTTTGTTCGT---------AATTGGCACCAATTTCA----------------GTTGAATATTTTTGCG---------------------------ACTCATAAGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................CTGGTGCGCCCGAGGAGGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
........................................GTCGGCAGCTGGTGCGCCCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
..............................................AGCTGGTGCGCCCGAGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
........................................GTCGGCAGCTGGTGCGCCCGAGGAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
................................GCCAAAATGTCGGCAGCTGGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.............................................CAGCTGGTGCGCCCGAGGAGGAGCAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000100000000000000000000000000000000000000000000000
..............................................AGCTGGTGCGCCCGAGGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
droGri2
AA---------------------GG--------------------------------------ATCAGTCAATAATGCTG-----------ACAT--CAAATTGATGCCAATCTGACGGCTCTGTCATCTCA-------------------------------------------------------------------------------------------------CAAT-TCA--TGTG------------------A--G--TGTGTGTGTGT----GTGTGTGTATG--TATGTGT-GTGT-------------------------------------------------------------------------TTGTGTGTGTGTGAG----TGTGT--T--------T--GTCTGT----T--------------------------TTTATGCGGGTT------------------------GTGTGCGT-------------------------------------TTTT-----CAATTTCA--------------------------------------------------------------------CTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................GTGTGTGTATG--TATGTGT-GTG.............................................................................................................................................................................................................................................................................................................................21200.05110
droWil2
GT---------------------GCTTGTATGGCCAAAGTGACGTCGTCTGGTGCCCCCGAGGAGGAGCATGTAAGTACCCGTTTGTCCCTACAACAATTTCTAAAACATAGTGGGAC----------------------GAGAAATGAGGGGAGTAGTTCTTAGTTCACCTAAAAGAAAGCCGCTTATGGGCTT----------------------AGAGCTCTTTG-----------CATCTA-TGGTAG-----------------TGTGTGCC--------TCTGTCTCTG--TGTGT-GTGT------------GTGTGTT----------TGTGTGGGAACGTAATTTTCTGGACC--------------------------------------------------------C------------------------------------------------------------------------------------------------------------TCTGCTCCTTTTCCTTTCCATTCTCATCCTCGTC--------GTTGAAGTCATCG-------------------------------------TCGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................CTGGTGCCCCCGAGGAGGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2116.00600600
.............................................................................................................................................................................................................................................................................................................................................................AATTTTCTGGACC--------------------------------------------------------C------------------------------------------------------------------------------------------------------------TCTGCTC.........................................................................................2112.00200020
........................CTTGTATGGCCAAAGTGACGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
..................................CAAAGTGACGTCGTCTGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
................................................CTGGTGCCCCCGAGGAGGAGCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
........................CTTGTATGGCCAAAGTGACGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
...........................................GTCGTCTGGTGCCCCCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...................................AAAGTGACGTCGTCTGGTGCCCCCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
.........................TTGTATGGCCAAAGTGACGTCGTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
..............................................GTCTGGTGCCCCCGAGGAGGAGCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
..............................................GTCTGGTGCCCCCGAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
................................................CTGGTGCCCCCGAGGAGGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...............................................TCTGGTGCCCCCGAGGAGGAGCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100001
.......................GCTTGTATGGCCAAAGTGACGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.............................ATGGCCAAAGTGACGTCGTCTGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
................................................................................................................................................................................................................................................................................................GTCTCTG--TGTGT-GTGT------------GTGTGTT----------...............................................................................................................................................................................................................................................................................................23110.09100010
...........................................................................................................................................................................................................................................................................................................TGT-GTGT------------GTGTGTT----------TGTGT..........................................................................................................................................................................................................................................................................................19200.05101000
dp5
GT---------------------GCCTGCATGGCCAAAGTGGCGGCCTCCGGTGCCCCCGAGGAGGAGCATGTAAGTACC-----------ACAG--AAGGCTAACACAAAGCGAGAATGTTGGCCACCTGAATGAAGCAGCTAAAGAAGGAAAG------------------AAAGAAAGCCGCTTATGTGCCT----------------------AAAACTCTTTGCC---C---A-GCC---AT------GCA---T------------------------------------------------------------------C---T-------------------------------------------ACGTATCCGTGT--------------G------CG----------------------------------------------------------G------------------------TCT--------------ACCCTGCGGCTCGGTCGT---------AAATTGCAC-----------------------------------------CTCCTTTG------------------GATCGAAAACGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................GGCCAAAGTGGCGGCCTCCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
droPer2
GT---------------------GCCTGCATGGCCAAAGTGGCGGCCTCCGGTGCCCCCGAGGAGGAGCATGTAAGTACC-----------ACAG--AAGGCTAACACAAAGCGAGAATGTCGGCCACGTGAATGAAGCAGCTAAAGGAGGAAAG------------------AAAGAAAGCCGCTTATGTGCCT----------------------AAAACTCTTTGCC---C---A-GCC---AT------GCA---T------------------------------------------------------------------C---T-------------------------------------------ACGTATCCGTGT--------------G------CG----------------------------------------------------------G------------------------TCT--------------ACTCTGGGGTTCGGTCGT---------AAATTGCAC-----------------------------------------CTCCTTTG------------------GATCGAAAACGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................AAGTGGCGGCCTCCGGTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droAna3
TC---------------------TCATGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TGTGTGTGTGT----GAGTGTGTGTG--TGTGTGT-GTGA-------------------------------------------------------------------------GTGTGTGTGTGTGCCCAAGTT---------------------------------------------------------------------------------------------------------------TTGTGTATTTTTCGG---------GAATGGC--------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................CATGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TGTGTGTGTGT----GAGTGTGT.............................................................................................................................................................................................................................................................................................................................................2730.331100000
........................CATGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TGTGTGTGTGT----GAGTGTG..............................................................................................................................................................................................................................................................................................................................................2630.331100000
.............................................................................................................................................................................................................................................................................................TGTGTGTG--TGTGTGT-GTGA-------------------------------------------------------------------------GTGTGT.............................................................................................................................................................................................................................................25200.306500010
..........................TGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TGTGTGTGTGT----GAGTGTGTG............................................................................................................................................................................................................................................................................................................................................26190.214100003
.............................................................................................................................................................................................................................................................................................TGTGTGTG--TGTGTGT-GTGA-------------------------------------------------------------------------GTGTGTG............................................................................................................................................................................................................................................26190.214100003
.........................ATGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TGTGTGTGTGT----GAGTGTGT.............................................................................................................................................................................................................................................................................................................................................26100.202200000
...................................................................................................................................................................................................................................................................................................TG--TGTGTGT-GTGA-------------------------------------------------------------------------GTGTGTGTGTG........................................................................................................................................................................................................................................24200.153100002
...........................................................................................................................................................................................................................................................................TGTGTGTGTGT----GAGTGTGTGTG--TGTG....................................................................................................................................................................................................................................................................................................................................26140.142000002
...................................................................................................................................................................................................................................................................................................TG--TGTGTGT-GTGA-------------------------------------------------------------------------GTGTGTGTGTGTG......................................................................................................................................................................................................................................26140.142000002
...............................................................................................................................................................................................................................................................................................TGTGTG--TGTGTGT-GTGA-------------------------------------------------------------------------GTGTGTGTG..........................................................................................................................................................................................................................................26160.132000002
............................TGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TGTGTGTGTGT----GAGTGTGTGTG--........................................................................................................................................................................................................................................................................................................................................26160.132000002
................................................................................................................................................................................................................................................................................................GTGTG--TGTGTGT-GTGA-------------------------------------------------------------------------GTGTGTGTG..........................................................................................................................................................................................................................................25200.102000002
...........................................................................................................................................................................................................................................................................TGTGTGTGTGT----GAGTGTGTGTG--TG......................................................................................................................................................................................................................................................................................................................................24200.102000002
.............................GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TGTGTGTGTGT----GAGTGTGTGTG--........................................................................................................................................................................................................................................................................................................................................25200.102000002
...........................................................................................................................................................................................................................................................................................AGTGTGTGTG--TGTGTGT-GTG.............................................................................................................................................................................................................................................................................................................................20200.102000002
.........................ATGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TGTGTGTGTGT----GAGTGTG..............................................................................................................................................................................................................................................................................................................................................25120.081100000
.........................ATGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TGTGTGTGTGT----GAGT.................................................................................................................................................................................................................................................................................................................................................22200.051000010
............................................................................................................................................................................................................................................................................................GTGTGTGTG--TGTGTGT-GTGA-------------------------------------------------------------------------GTGTG..............................................................................................................................................................................................................................................25200.051000001
................................................................................................................................................................................................................................................................................GTGTGT----GAGTGTGTGTG--TGTGTGT-................................................................................................................................................................................................................................................................................................................................24200.051000001
..................................................................................................................................................................................................................................................................................................GTG--TGTGTGT-GTGA-------------------------------------------------------------------------GTGTGT.............................................................................................................................................................................................................................................20200.051100000
..........................TGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TGTGTGTGTGT----GAGTGTGT.............................................................................................................................................................................................................................................................................................................................................25200.051000010
...............................................................................................................................................................................................................................................................................TGTGTGT----GAGTGTGTGTG--TGTGTG..................................................................................................................................................................................................................................................................................................................................24200.051000001
droBip1
GT---------------------GTATGTGTATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--GTATGTGTATGTG-------------------------TAT---------------------G-TGTATGTGTATGT--------------------GTATGGTGT--AT--------G----TGT------------ATGTG--------T--ATGTGTATATG-----------------------------------------------------------------T--------------G-----------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CTGT----------CA--------TGTGTGTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG---------------C---GT--GT--G----TGTGTGTG--------TGTGTGTG--TGTGT---GTGT------------------------GTGTGTGT---------------------------GT--------------G----TGTGT--G------TGTGTG--------T--GTGTGC----T-----------------------------------------------------------------T--------------G-----------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TG----------------------TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--GT--GTGTGTGTG--------------TG---------TGT---------------------G-AGTTTGCGTGTGT--------------------GATTCGAGA------------------GTGT--G------TCTGTG--------T--GTGTGT--CTGACAGCTGTCAAGGTGTTGACATC---GG----------------------------------------------AAATTG------------------CGTAGGAAA-------------------------------------------------TTTCAAAAGTGCCTGAC-ATTTCGGGCATTTTTGAGCGSizeHit CountTotal NormTotal
No Reads
droEle1
CT---------------------TCGCATGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TGTGTGTGTGT----GTGTGTGTGTG--AGTGTGT-GTGT-------------------------------------------------------------------------GTGTGTAGGTGT---CAAGGG---------------------------T-----------------GCTGTCCTGGCC----------GGGAAACGAAAGCCCCACCACCA--------CCCT------------GGGCGGGA-----------------------------------------------TTGCATATTTTGCTG---------------------------CCTCA--CGAASizeHit CountTotal NormTotal
No Reads
droRho1
AC---------------------GTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------ACTTT-TCA--CACATG-CAGCAGT---GT--GT--G----TGTGTGTG--------------TG---------TGCGAGA---GGTTTGAGTGTGTT----------AGT---------------------------GCG------------------AGTGT--G------CATATG--------T--ATGTGT----T--TACAGTTA-------------GCGGGC----------GCCAAACCAAG--------------------------------------------------------------------------G--------TGTCGCC----------------GTGCACCCAAAAT----CGTTT-----CAGCGTGAATASizeHit CountTotal NormTotal
No Reads
droBia1
GCTG--CGGTGTGT---------------GTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-CTG--TGTGTG-TGTGTGTGT-GT--G--------TGTGTGTGTGTGTGTGTGTGT--GTGT--GT---------------------GTGTG-T-G------T-----------------------------GT--------------G----TGTGT----------GT--GTGTGTGTGTGTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CG----------------------TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--GT--GTGTGTGTG--------------TG---------TGT---------------------G-TGTGTGTGTGTGT--------------------GTGTGGTGA------------------GTGC--T------CGAGTG--------T--GTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TGCT----------ACTGTTCGTGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--G--TGTGTGTGTG--------TGTGTGTGTG--TGTGT-GTGT------------GTGTGTT----------AGTGTG--------------------GTACGGCA------------------GTGT--G------TGTGTG--------T--GCGTGC----T--------------------------------------------------------------GAGTAGGCTCTTGAGCCG------------------CACAACACT-------------------------------------------------TCCGGTTG-----------------------CCACTTGSizeHit CountTotal NormTotal
No Reads
dm3
TG----------------------TGTGTGTGCCCAAAAGG-CATTTCCCGGCGC-----------AGT--GAGAAAATCAATC-----------------------------------------------------------------------------AAAA---------------TCGATTTAAAAGCACAACTTCCG----TTGCGGATTTACC--------AATGT-CCG--TGTGT--------------------G--CCCGGGTGTG------T------GCG--TGTGTGT-GTGGGTGAATGTTTGCCATTGGG----------CT---------------------------TGTG------------------GGTGT--A------TGTATG--------G--GTGTGT----G--TATTGTGA-------------------------------------------------------------------------------------------------AAATGTTACCAATTTATT--------TG----------------------------------------------------------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................CCCAAAAGG-CATTTCCCGGCGC-----------AGT--GA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................T---------------------------TGTG------------------GGTGT--A------TGTATG--------G--.............................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................T--------------------G--CCCGGGTGTG------T------GCG--TGTGTG..................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................AGAAAATCAATC-----------------------------------------------------------------------------AAAA---------------TCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................G------T------GCG--TGTGTGT-GTGGGT..........................................................................................................................................................................................................................................................................................................................18100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................................................................................................TG------T------GCG--TGTGTGT-GTGGGTG.........................................................................................................................................................................................................................................................................................................................2060.1710000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TG------T------GCG--TGTGTGT-GTGGGT..........................................................................................................................................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................TGTG------T------GCG--TGTGTGT-GTGG............................................................................................................................................................................................................................................................................................................................19190.1120000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................GGTGTG------T------GCG--TGTGTGT-GT..............................................................................................................................................................................................................................................................................................................................19120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................GTGTG------T------GCG--TGTGTGT-GTGGG...........................................................................................................................................................................................................................................................................................................................21130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..................................................................................................................................................................................................................................................................................GTG------T------GCG--TGTGTGT-GTGG............................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TGTG------T------GCG--TGTGTGT-GTG.............................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................................................................................................................................................................................................................................TG------T------GCG--TGTGTGT-GTGGG...........................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
droSim2
GC---------------------TTGTGCGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---GT--GA--G----TGTGTGTG--TGTGTGTGTGT--GTGT--GTGT-GT---------------------GT-G------T-------------------------------------------GTG----TGTGT----------GT--GTGGACGTATGTGAGT------T-----------------GGCATA---GA----------------------------------------------AAATTA------------------TTTGCTACT-------------------------------------------------TTTAATTA-----------------------GTGCCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................G------T-------------------------------------------GTG----TGTGT----------GT--GTGGACG..................................................................................................................................................................................................................1931.33400004000000000000
.......................................................................................................................................................................................................................................................................................TGTGTGTGTGT--GTGT--GT...................................................................................................................................................................................................................................................................................................................................17200.40800000000008000000
...................................................................................................................................................................................................................................................................................TG--TGTGTGTGTGT--GTGT--GT...................................................................................................................................................................................................................................................................................................................................19200.30600000000006000000
...............................................................................................................................................................................................................................................................................................................GT---------------------GT-G------T-------------------------------------------GTG----TGTGT----------GT--GTGGAC...................................................................................................................................................................................................................2250.20110000000000000000
droSec2
AGCGCACGGCATAT---------------GTA--------------------------------------------------------------------------------------------------------------------------------------------------------CTCACGTATGT----------------------ATTGTCTCCT-----C-CCC--TGC---AT------GTA-TATGTGTGT--GTGTGTGTG--------------TG---------AGGGT----------------------GAGGGTGAGGGT--------------------GTTTTGCGG------------------GTGT--G------TGCGTG--------T--GTATCC----T--------------------------------------------------------------------------------G-----------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................TTGCGG------------------GTGT--G------TGCGTG--------T--GT...........................................................................................................................................................................................................2020.5010010
........................................................................................................................................................................................................................................................................GT--GTGTGTGTG--------------TG---------AGGGT----------------------......................................................................................................................................................................................................................................................................................................18160.0610010
droYak3
GCAC--CGCCATAC-----------GTGTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------------TGCCGTTT---AC------ATG-----T--GTGTGTGTGTGTGT-------------------------GA---------------------G-TGTGTGTGTGCGT--------------------GAGGGGGTTAAAT--------------GC------------GAGTG----CATGT--AAAT----GTT-----------------GGCGCCGTGGCCAA-------------ACAATA-------------------------------------------------------------GCCGCTA--------------------------GTTAGTTTGCTG---------------------------GCCA--GTTGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................TGTGT-------------------------GA---------------------G-TGTGTGTGTGCG...........................................................................................................................................................................................................................................................................................20150.13201010000000
....................................................................................................................................................................................................................................................................................GT-------------------------GA---------------------G-TGTGTGTGTGCGT--------------------......................................................................................................................................................................................................................................................................18160.06100000010000
..........................................................................................................................................................................................................................................................................GTGTGTGTGTGT-------------------------GA---------------------G-TGTGTGTGTG.............................................................................................................................................................................................................................................................................................25200.05101000000000
................................................................................................................................................................................................................................................................................GTGTGT-------------------------GA---------------------G-TGTGTGTGTGC............................................................................................................................................................................................................................................................................................20200.05100100000000
droEre2
CT---------------------CTGTCGGTGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGC-CTC--TGTGT-GC---------------------GTGCGTGCG------A--------GTGT--GTGT-CT---------------------GT-GTGTGTCGTTCTG--------------------TTGCTGTTGTGT--------------GT------------GTGCG----TGCGT--GTGC----ATT-----------------GCCACTGTGTGCGTGCGAGTAG------------------------TGC--------------CTACTGCGGCCGAGTCGA---------GTGTTGCCT-----------------------------------------GTGCTTC-----------------------AAAATCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................GT--GTGT-CT---------------------GT-GTGTGTCGT.............................................................................................................................................................................................................................................................................................1911.0010000100
..................................................................................................................................................................................................................................................................................................................................................TCTG--------------------TTGCTGTTGTGT--------------GT------------GTG..........................................................................................................................................................................................................................2111.0010000010
................................................................................................................................................................................................................................................................................................................................................GTTCTG--------------------TTGCTGTTGTGT--------------GT------------GTGCG----TG..................................................................................................................................................................................................................2711.0011000000
................................................................................................................................................................................................................................................................................................................................................GTTCTG--------------------TTGCTGTTGTGT--------------GT------------.............................................................................................................................................................................................................................2011.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGAGTCGA---------GTGTTGCCT-----------------------------------------.....................................2011.0010001000
...........................................................................................................................................................................................................................................................................................A--------GTGT--GTGT-CT---------------------GT-GTGTGTCG..............................................................................................................................................................................................................................................................................................2111.0010001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGAGTCGA---------GTGTTGC................................................................................1811.0011000000
................................................................................................................................................................................................................................................................................GTGCG------A--------GTGT--GTGT-CT---------------------GT-GTGTGTCG..............................................................................................................................................................................................................................................................................................2611.0011000000
...................................................................................................................................................................................................................................................................................................................................................CTG--------------------TTGCTGTTGTGT--------------GT------------GTGCG----TG..................................................................................................................................................................................................................2411.0011000000
.............................................................................................................................................................................................................................................................................................................................................GTCGTTCTG--------------------TTGCTGTTGT...........................................................................................................................................................................................................................................................1911.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................GTGT--------------GT------------GTGCG----TGCGT--GTGC----A....................................................................................................................................................................................................2120.5010000010

Generated: 05/18/2015 at 01:57 AM