ID:

dmo_21

 Coordinate:

scaffold_6496:9090463-9090534 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.9 -26.9 -26.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TAAGTTTCAAAAGAAAAAACGAAAAATGTCAAATTTTCAGCTGCGTTTGCAGGACGGTATTTGTGACAATATGAATTATTGAAATCAATTTATTCAGCATATTGCACATCTCCCGGCCTATAAAACAGTTGTGAGCCCGTCGATTTAAATGATTTGTGTATTTAAAATAAAT

***********************************..((((((..((((.(((.(((....((((.((((((((((.((((....))))..)))))...)))))))))....))).))).)))).)))))).....************************************ 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 M046

female body

 V041

embryo

 V110

male body		 V056

head

 V049

head
...................................................................................................TATTGCACATCTCCCGGCCTAT................................................... 22 0 1 98033.00 98033 53028 42391 2531 57 16 10
...................................................................................................TATTGCACATCTCCCGGCCTA.................................................... 21 0 2 17548.50 35097 20844 12031 2076 108 17 21
...................................................................................................TATTGCACATCTCCCGGCCTATA.................................................. 23 0 1 10954.00 10954 8173 2507 271 3 0 0
...................................................................................................TATTGCACATCTCCCGGCCT..................................................... 20 0 2 8204.50 16409 7799 7412 938 188 44 28
...................................................................................................TATTGCACATCTCCCGGCCTATAA................................................. 24 0 1 4601.00 4601 2783 1728 87 1 1 1
...................................................................................................TATTGCACATCTCCCGGCCTATAAA................................................ 25 0 1 3822.00 3822 513 3212 75 19 3 0
....................................................................................................ATTGCACATCTCCCGGCCTAT................................................... 21 0 1 2956.00 2956 678 2276 2 0 0 0
...................................................................................................TGTTGCACATCTCCCGGCCTAT................................................... 22 1 1 2860.00 2860 2850 5 5 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATT.................................................. 23 1 1 2262.00 2262 1488 755 17 1 1 0
...................................................................................................TATTGCACATCTCCCGGCCTAA................................................... 22 1 2 1986.00 3972 2345 1546 77 2 1 1
..................................................AGGACGGTATTTGTGACAATATG................................................................................................... 23 0 1 1845.00 1845 642 1029 153 19 2 0
...................................................................................................TATTGCACATCTCCCGGCCTATAAAA............................................... 26 0 1 1390.00 1390 61 1309 14 6 0 0
...................................................................................................TACTGCACATCTCCCGGCCTAT................................................... 22 1 1 1237.00 1237 1217 17 3 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTAAA.................................................. 23 1 2 1207.50 2415 1020 1370 20 4 0 1
..................................................AGGACGGTATTTGTGACAATAT.................................................................................................... 22 0 1 1011.00 1011 662 271 76 1 0 1
...................................................................................................TATTGCACATCTCCCGGCCC..................................................... 20 1 2 903.50 1807 1803 3 1 0 0 0
..................................................................................................CTATTGCACATCTCCCGGCCTAT................................................... 23 1 1 669.00 669 558 102 9 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATAAAAA.............................................. 27 1 1 662.00 662 6 654 0 2 0 0
...................................................................................................TATGGCACATCTCCCGGCCTAT................................................... 22 1 1 625.00 625 622 1 2 0 0 0
...................................................................................................TATTGCACACCTCCCGGCCTAT................................................... 22 1 1 597.00 597 565 13 18 1 0 0
...................................................................................................TGTTGCACATCTCCCGGCCTA.................................................... 21 1 2 560.00 1120 1115 2 3 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTAAAAA................................................ 25 1 1 536.00 536 29 502 3 1 1 0
...................................................................................................TATCGCACATCTCCCGGCCTAT................................................... 22 1 1 512.00 512 506 5 0 1 0 0
...................................................................................................TTTTGCACATCTCCCGGCCTAT................................................... 22 1 1 482.00 482 480 2 0 0 0 0
...................................................................................................TGTTGCACATCTCCCGGCCTATA.................................................. 23 1 1 444.00 444 443 1 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTAAAA................................................. 24 1 2 441.00 882 146 729 7 0 0 0
...................................................................................................TATTGCACATCTCCCGGCC...................................................... 19 0 2 434.50 869 689 165 12 2 1 0
...................................................................................................TATTGCACATCTCCCGGCCTATC.................................................. 23 1 1 417.00 417 203 207 2 5 0 0
....................................................................................................ATTGCACATCTCCCGGCCTA.................................................... 20 0 2 389.50 779 168 602 5 4 0 0
...................................................................................................TATAGCACATCTCCCGGCCTAT................................................... 22 1 1 307.00 307 307 0 0 0 0 0
.....................................................................................................TTGCACATCTCCCGGCCTAT................................................... 20 0 1 288.00 288 149 139 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTACAAAA............................................... 26 1 1 272.00 272 40 225 1 4 1 1
...................................................................................................TACTGCACATCTCCCGGCCTA.................................................... 21 1 2 254.50 509 506 1 2 0 0 0
...................................................................................................TATTGCACATCGCCCGGCCTAT................................................... 22 1 1 252.00 252 1 242 9 0 0 0
....................................................................................................ATTGCACATCTCCCGGCCTATA.................................................. 22 0 1 249.00 249 122 127 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATAAAAAA............................................. 28 1 1 245.00 245 3 240 0 1 1 0
....................................................................................................ATTGCACATCTCCCGGCCT..................................................... 19 0 2 233.50 467 87 379 0 0 0 1
...................................................................................................TATTGCACATCTCCCGGCCTACAAA................................................ 25 1 2 230.50 461 154 303 1 2 1 0
...................................................................................................TATTGCACATCTCCAGGCCTAT................................................... 22 1 1 213.00 213 206 5 2 0 0 0
...................................................................................................TACTGCACATCTCCCGGCCTATA.................................................. 23 1 1 211.00 211 211 0 0 0 0 0
...................................................................................................CATTGCACATCTCCCGGCCTAT................................................... 22 1 1 210.00 210 190 18 2 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTAAAAAA............................................... 26 1 1 207.00 207 4 203 0 0 0 0
...................................................................................................TATTGCACATATCCCGGCCTAT................................................... 22 1 1 206.00 206 193 7 6 0 0 0
....................................................................................................ATTGCACATCTCCCGGCCTATAAA................................................ 24 0 1 205.00 205 8 196 1 0 0 0
...................................................................................................TGTTGCACATCTCCCGGCCT..................................................... 20 1 2 203.00 406 403 2 1 0 0 0
...................................................................................................TATTGCACATCTCCCTGCCTAT................................................... 22 1 1 180.00 180 161 11 8 0 0 0
...................................................................................................GATTGCACATCTCCCGGCCTAT................................................... 22 1 1 175.00 175 156 19 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTACAAAAA.............................................. 27 2 1 172.00 172 3 168 0 1 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATG.................................................. 23 1 1 167.00 167 77 85 5 0 0 0
..................................................ATGACGGTATTTGTGACAATATG................................................................................................... 23 1 1 163.00 163 162 1 0 0 0 0
..................................................ATGACGGTATTTGTGACAATAT.................................................................................................... 22 1 1 163.00 163 163 0 0 0 0 0
...................................................................................................TATTGCAAATCTCCCGGCCTAT................................................... 22 1 1 162.00 162 157 2 3 0 0 0
....................................................................................................ATTGCACATCTCCCGGCCTATAA................................................. 23 0 1 157.00 157 49 107 1 0 0 0
...................................................................................................TGTTGCACATCTCCCGGCCTATAA................................................. 24 1 1 145.00 145 145 0 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTT.................................................... 21 1 2 144.50 289 126 147 10 5 1 0
...................................................................................................TATTGCACATCTACCGGCCTAT................................................... 22 1 1 139.00 139 132 2 5 0 0 0
...................................................................................................AATTGCACATCTCCCGGCCTAT................................................... 22 1 1 128.00 128 107 20 1 0 0 0
...................................................................................................TATTGGACATCTCCCGGCCTAT................................................... 22 1 1 122.00 122 120 2 0 0 0 0
...................................................................................................TATGGCACATCTCCCGGCCTA.................................................... 21 1 2 122.00 244 244 0 0 0 0 0
...................................................................................................TATTGCACATCACCCGGCCTAT................................................... 22 1 1 121.00 121 2 117 2 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTTT................................................... 22 1 1 120.00 120 56 55 7 2 0 0
...................................................GGACGGTATTTGTGACAATATG................................................................................................... 22 0 1 116.00 116 1 115 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATTAAA............................................... 26 1 1 113.00 113 14 98 1 0 0 0
...................................................................................................TATGGCACATCTCCCGGCCTATA.................................................. 23 1 1 110.00 110 108 1 1 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATTA................................................. 24 1 1 110.00 110 80 30 0 0 0 0
...................................................................................................TACTGCACATCTCCCGGCCT..................................................... 20 1 2 105.00 210 208 2 0 0 0 0
...................................................................................................TATCGCACATCTCCCGGCCTA.................................................... 21 1 2 104.00 208 205 1 2 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTC.................................................... 21 1 2 102.50 205 36 149 13 6 1 0
...................................................................................................TATTTCACATCTCCCGGCCTAT................................................... 22 1 1 101.00 101 84 17 0 0 0 0
..................................................................................................CTATTGCACATCTCCCGGCCTATA.................................................. 24 1 1 98.00 98 91 7 0 0 0 0
....................................................................................................AGTGCACATCTCCCGGCCTAT................................................... 21 1 1 97.00 97 97 0 0 0 0 0
...................................................................................................TATTGCACATCCCCCGGCCTAT................................................... 22 1 1 97.00 97 44 51 2 0 0 0
...................................................................................................TTTTGCACATCTCCCGGCCTA.................................................... 21 1 2 95.00 190 190 0 0 0 0 0
...................................................................................................CATTGCACTTGTCCCGGCCTATAAAA............................................... 26 3 2 94.00 188 28 156 3 1 0 0
...................................................................................................TATTGCACATCTCCCGGCCTACAAAAAA............................................. 28 2 1 94.00 94 2 91 0 1 0 0
...................................................................................................TATCGCACATCTCCCGGCCTATA.................................................. 23 1 1 92.00 92 92 0 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATAAAAAAA............................................ 29 2 1 91.00 91 1 90 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTAAAAAAA.............................................. 27 2 1 90.00 90 1 89 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATAT................................................. 24 1 1 89.00 89 64 25 0 0 0 0
...................................................................................................TATTGCGCATCTCCCGGCCTAT................................................... 22 1 1 88.00 88 65 16 7 0 0 0
..................................................AGGACGGTATTTGTGACAATATA................................................................................................... 23 1 1 86.00 86 58 23 5 0 0 0
....................................................................................................ATTGCACATCTCCCGGCCTATT.................................................. 22 1 1 82.00 82 28 54 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCA..................................................... 20 1 2 81.00 162 41 117 3 0 1 0
..................................................................................................CGATTGCACATCTCCCGGCCTAT................................................... 23 2 1 81.00 81 81 0 0 0 0 0
...................................................................................................TATTGCACATCTCCCGTCCTAT................................................... 22 1 1 81.00 81 70 9 2 0 0 0
..................................................................................................ATATTGCACATCTCCCGGCCTAT................................................... 23 0 1 80.00 80 4 76 0 0 0 0
...................................................................................................TACTGCACATCTCCCGGCCTATAA................................................. 24 1 1 80.00 80 79 1 0 0 0 0
..................................................AGGACGGTATTTGTGACAATA..................................................................................................... 21 0 1 79.00 79 52 24 2 1 0 0
...................................................................................................TATTGCACATCTCCCGGCCTCT................................................... 22 1 1 79.00 79 3 26 50 0 0 0
...................................................................................................TTTTGCACATCTCCCGGCCTATA.................................................. 23 1 1 79.00 79 79 0 0 0 0 0
...................................................................................................TATTGCACATCTCCCGCCCTAT................................................... 22 1 1 74.00 74 59 12 3 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATTAA................................................ 25 1 1 72.00 72 32 37 3 0 0 0
....................................................................................................ATTGCACATCTCCCGGCCTATAAAA............................................... 25 0 1 71.00 71 4 67 0 0 0 0
...................................................................................................TGTTGCACATCTCCCGGCCTAA................................................... 22 2 2 70.50 141 140 0 1 0 0 0
...................................................................................................TATTGCACACCTCCCGGCCTATA.................................................. 23 1 1 67.00 67 61 0 6 0 0 0
...................................................................................................TATTGCACATCTCCCAGCCTAT................................................... 22 1 1 65.00 65 44 11 10 0 0 0
...................................................................................................TATTGTACATCTCCCGGCCTAT................................................... 22 1 1 62.00 62 50 10 2 0 0 0
...................................................................................................TGTTGCACATCTCCCGGCCTATT.................................................. 23 2 1 60.00 60 60 0 0 0 0 0
...................................................................................................TATGGCACATCTCCCGGCCT..................................................... 20 1 2 59.00 118 117 0 1 0 0 0
..................................................................................................CTATTGCACATCTCCCGGCCTA.................................................... 22 1 2 57.50 115 89 26 0 0 0 0
..................................................AGGTCGGTATTTGTGACAATATG................................................................................................... 23 1 1 56.00 56 56 0 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCCAT................................................... 22 1 1 56.00 56 44 12 0 0 0 0
......................................................................................................TGCACATCTCCCGGCCTAT................................................... 19 0 1 54.00 54 22 30 2 0 0 0
..................................................................................................TTATTGCACATCTCCCGGCCTAT................................................... 23 1 1 53.00 53 5 48 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTAG................................................... 22 1 2 53.00 106 35 64 4 3 0 0
...................................................................................................TATTGCACACCTCCCGGCCTA.................................................... 21 1 2 53.00 106 83 0 23 0 0 0
....................................................................................................ATTGCACATCTCCCGGCCTAA................................................... 21 1 2 52.50 105 29 76 0 0 0 0
...................................................................................................TATAGCACATCTCCCGGCCTATA.................................................. 23 1 1 52.00 52 52 0 0 0 0 0
...................................................................................................TATAGCACATCTCCCGGCCTA.................................................... 21 1 2 52.00 104 103 1 0 0 0 0
..................................................................................................GTATTGCACATCTCCCGGCCTAT................................................... 23 1 1 51.00 51 1 50 0 0 0 0
..................................................................................................CTATTGCACATCTCCCGGCCT..................................................... 21 1 2 50.00 100 89 10 1 0 0 0
...................................................................................................TATTACACATCTCCCGGCCTAT................................................... 22 1 1 49.00 49 38 8 3 0 0 0
...................................................................................................TGTTGCACATCTCCCGGCCC..................................................... 20 2 2 49.00 98 98 0 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTAAAAAAAA............................................. 28 2 1 48.00 48 0 48 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTGT................................................... 22 1 1 47.00 47 38 6 2 1 0 0
...................................................................................................TATTGCACATCTCCCGGCCTACAAAAAAA............................................ 29 3 1 47.00 47 1 46 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATTT................................................. 24 2 1 46.00 46 36 9 0 1 0 0
....................................................................................................ATTGCACATCTCCCGGCCTAAA.................................................. 22 1 2 45.00 90 17 73 0 0 0 0
...................................................................................................TATTGCACATATCCCGGCCTA.................................................... 21 1 2 45.00 90 84 3 3 0 0 0
.......................................................................................................GCACATCTCCCGGCCTAT................................................... 18 0 1 44.00 44 15 29 0 0 0 0
...................................................................................................TATTGCACATCTCCAGGCCTA.................................................... 21 1 2 43.50 87 79 2 5 0 1 0
...................................................................................................TATTGCACATCTCCCGGCCTATCC................................................. 24 2 1 43.00 43 1 42 0 0 0 0
..................................................................................................ATATTGCACATCTCCCGGCCT..................................................... 21 0 2 42.00 84 56 22 5 0 1 0
...................................................................................................TATTGCACATCTCCCCGCCTAT................................................... 22 1 1 42.00 42 29 4 9 0 0 0
..................................................AGGTCGGTATTTGTGACAATAT.................................................................................................... 22 1 1 42.00 42 42 0 0 0 0 0
...................................................................................................TATTGCACGTCTCCCGGCCTAT................................................... 22 1 1 40.00 40 22 13 5 0 0 0
...................................................................................................TATGGCACATCTCCCGGCCTATAA................................................. 24 1 1 40.00 40 40 0 0 0 0 0
..................................................AGGACGGTATTTGTGACAATATGA.................................................................................................. 24 0 1 39.00 39 18 16 5 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATAC................................................. 24 1 1 39.00 39 25 12 2 0 0 0
...................................................................................................TATTGCAAATCTCCCGGCCTA.................................................... 21 1 2 38.00 76 71 0 5 0 0 0
...................................................GGACGGTATTTGTGACAATAT.................................................................................................... 21 0 1 38.00 38 1 37 0 0 0 0
...................................................................................................TATTGCACATCTCCAGGCCTATA.................................................. 23 1 1 38.00 38 38 0 0 0 0 0
...................................................................................................TACTGCACATCTCCCGGCCTAA................................................... 22 2 2 38.00 76 75 0 1 0 0 0
...................................................................................................TTTTGCACATCTCCCGGCCT..................................................... 20 1 2 37.50 75 74 0 0 1 0 0
...................................................................................................TATCGCACATCTCCCGGCCT..................................................... 20 1 2 37.50 75 71 1 3 0 0 0
..................................................................................................CTATTGCACATCTCCCGGCCTATAA................................................. 25 1 1 37.00 37 34 3 0 0 0 0
...................................................................................................TATTGCACATCTTCCGGCCTAT................................................... 22 1 1 36.00 36 31 2 3 0 0 0
...................................................................................................TACTGCACATCTCCCGGCCTATT.................................................. 23 2 1 36.00 36 36 0 0 0 0 0
...................................................................................................TATTGCACATCTCCCGACCTAT................................................... 22 1 1 36.00 36 25 8 3 0 0 0
...................................................................................................TGTTGCACACCTCCCGGCCTAT................................................... 22 2 1 35.00 35 35 0 0 0 0 0
...................................................................................................TATTGCATATCTCCCGGCCTAT................................................... 22 1 1 35.00 35 29 3 3 0 0 0
.................................................................................................TCTATTGCACATCTCCCGGCCTAT................................................... 24 2 1 35.00 35 34 1 0 0 0 0
..................................................AGGACGGTATTTGTGACAATATAAA................................................................................................. 25 1 1 34.00 34 2 29 3 0 0 0
...................................................................................................TATTGCACATCGCCCGGCCTA.................................................... 21 1 2 33.50 67 0 66 1 0 0 0
...................................................................................................TATTGCAAATCTCCCGGCCTAA................................................... 22 2 2 33.50 67 67 0 0 0 0 0
...................................................................................................TATTCCACATCTCCCGGCCTAT................................................... 22 1 1 33.00 33 26 6 1 0 0 0
...................................................................................................TATTGCACATCTACAGGCCTAT................................................... 22 2 1 32.00 32 32 0 0 0 0 0
...................................................................................................TATTGCACATCTCTCGGCCTAT................................................... 22 1 1 32.00 32 23 5 4 0 0 0
...................................................................................................TATTGCACATCTACCGGCCTA.................................................... 21 1 2 32.00 64 62 1 1 0 0 0
...................................................................................................TATTGCACATCTCCTGGCCTAT................................................... 22 1 1 31.00 31 24 6 1 0 0 0
....................................................................................................ATTGCACATCTCCCGGCCTAAAAA................................................ 24 1 1 31.00 31 0 31 0 0 0 0
..................................................AGCACGGTATTTGTGACAATAT.................................................................................................... 22 1 1 31.00 31 31 0 0 0 0 0
..................................................AGGACGGTATTTGTGACAATAC.................................................................................................... 22 1 1 30.00 30 30 0 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATAG................................................. 24 1 1 30.00 30 8 19 2 1 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATTC................................................. 24 2 1 30.00 30 11 18 0 1 0 0
...................................................................................................TATTGCACATCTCCCGGTCTAT................................................... 22 1 1 30.00 30 20 6 3 1 0 0
...................................................................................................TATTGCACATATCCCGGCCTATA.................................................. 23 1 1 29.00 29 28 0 1 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATTAAAA.............................................. 27 2 1 29.00 29 0 27 2 0 0 0
...................................................................................................TATTGCACATCTCCCGGC....................................................... 18 0 2 28.50 57 13 40 4 0 0 0
...................................................................................................GATTGCACATCTCCCGGCCTA.................................................... 21 1 2 28.50 57 54 2 1 0 0 0
..................................................AGGACGGTATTTGTGACAATATGC.................................................................................................. 24 1 1 28.00 28 18 7 3 0 0 0
...................................................................................................TATTGCACACCTCCCGGCCTATAA................................................. 24 1 1 28.00 28 24 1 3 0 0 0
.....................................................................................................TTGCACATCTCCCGGCCTA.................................................... 19 0 2 27.50 55 21 34 0 0 0 0
....................................................................................................ATTGCACATCTCCCGGCCTATAAAAA.............................................. 26 1 1 27.00 27 0 27 0 0 0 0
...................................................................................................TATCGCACATCTCCCGGCCTATT.................................................. 23 2 1 27.00 27 27 0 0 0 0 0
...................................................................................................CATTGCACATCTCCCGGCCTA.................................................... 21 1 2 27.00 54 49 4 1 0 0 0
..................................................AGGACGGTATTTGTGACAATATGAAA................................................................................................ 26 1 1 27.00 27 0 24 3 0 0 0
.....................................................................................................TTGCACATCTCCCGGCCTATA.................................................. 21 0 1 27.00 27 16 11 0 0 0 0
..................................................AGGACGGTATTTGTGACAATATAAAA................................................................................................ 26 2 1 27.00 27 0 25 2 0 0 0
...................................................................................................TGCTGCACATCTCCCGGCCTAT................................................... 22 2 1 27.00 27 26 0 0 0 0 1
...................................................................................................TATTGCACATTTCCCGGCCTAT................................................... 22 1 1 26.00 26 21 5 0 0 0 0
...................................................................................................TATTGCACATCTCCCTGCCTA.................................................... 21 1 2 25.00 50 32 5 12 0 1 0
...................................................................................................TATCGCACATCTCCCGGCCTATAA................................................. 24 1 1 25.00 25 25 0 0 0 0 0
....................................................................................................ATTGCACTTGTCCCGGCCTATAAA................................................ 24 2 2 25.00 50 11 38 1 0 0 0
....................................................................................................ATCGCACATCTCCCGGCCTAT................................................... 21 1 1 25.00 25 25 0 0 0 0 0
...................................................................................................TGTTGCACATCTCCCGGCCTATAAA................................................ 25 1 1 25.00 25 25 0 0 0 0 0
...................................................................................................TGTTGCACATCTCCCGGCCTAAA.................................................. 23 2 2 25.00 50 50 0 0 0 0 0
...................................................................................................TATTGCACATCGCCCGGCCTATA.................................................. 23 1 1 25.00 25 0 25 0 0 0 0
...................................................................................................TATTGCACATCTCCCTGCCTATA.................................................. 23 1 1 24.00 24 23 0 1 0 0 0
.....................................................................................................TTGCACATCTCCCGGCCT..................................................... 18 0 2 23.50 47 23 24 0 0 0 0
...................................................................................................TGTTGCACATCTCCAGGCCTAT................................................... 22 2 1 23.00 23 23 0 0 0 0 0
..................................................AGGACGGTATTTGTGACAAT...................................................................................................... 20 0 1 23.00 23 11 11 1 0 0 0
...................................................................................................TATTGGACATCTCCCGGCCTA.................................................... 21 1 2 22.50 45 43 0 2 0 0 0
..................................................ATGACGGTATTTGTGACAATA..................................................................................................... 21 1 1 22.00 22 22 0 0 0 0 0
...................................................................................................TATTTCACATCTCCCGGCCTA.................................................... 21 1 2 22.00 44 35 9 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATTAAAAA............................................. 28 2 1 22.00 22 0 22 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCTTAT................................................... 22 1 1 22.00 22 16 2 4 0 0 0
..................................................................................................CTATTGCACATCTCCCGGCCTATT.................................................. 24 2 1 22.00 22 18 4 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTG.................................................... 21 1 2 22.00 44 33 9 2 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCGAT................................................... 22 1 1 22.00 22 20 0 2 0 0 0
...................................................................................................TATAGCACATCTCCCGGCCT..................................................... 20 1 2 21.50 43 43 0 0 0 0 0
...................................................................................................GATTGCACATCTCCCGGCCTATA.................................................. 23 1 1 21.00 21 20 1 0 0 0 0
...................................................................................................TATTTCACATCTCCCGGCCTATA.................................................. 23 1 1 21.00 21 19 2 0 0 0 0
..................................................AGGACGGTATTTGTGACAATATAA.................................................................................................. 24 1 1 21.00 21 2 18 1 0 0 0
.....................................................................................................TTGCACATCTCCCGGCCTATAA................................................. 22 0 1 20.00 20 13 7 0 0 0 0
...................................................................................................TATTGCAAATCTCCCGGCCTATA.................................................. 23 1 1 20.00 20 20 0 0 0 0 0
..................................................AGGACGGTATTTGTGACAATATAAAAA............................................................................................... 27 3 1 20.00 20 0 19 0 1 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATAAT................................................ 25 1 1 20.00 20 10 10 0 0 0 0
...................................................................................................TATTGCACAACTCCCGGCCTAT................................................... 22 1 1 20.00 20 14 6 0 0 0 0
...................................................................................................TTTTGCACATCTCCCGGCCTATAA................................................. 24 1 1 20.00 20 20 0 0 0 0 0
...................................................................................................CATTGCACATCTCCCGGCCTATA.................................................. 23 1 1 20.00 20 19 1 0 0 0 0
..................................................AGGACGGTATTTGTGACAATATGT.................................................................................................. 24 1 1 20.00 20 11 7 2 0 0 0
...................................................................................................TACTGCACACCTCCCGGCCTAT................................................... 22 2 1 19.00 19 19 0 0 0 0 0
..................................................AGCACGGTATTTGTGACAATATG................................................................................................... 23 1 1 19.00 19 19 0 0 0 0 0
...................................................................................................TATTGCACATCGCCCGGCCT..................................................... 20 1 2 18.50 37 0 36 1 0 0 0
...................................................................................................TATTGCACATATCCCGGCCT..................................................... 20 1 2 18.50 37 34 1 2 0 0 0
..................................................................................................CGATTGCACATCTCCCGGCCTATA.................................................. 24 2 1 18.00 18 18 0 0 0 0 0
....................................................................................................ATTGCACATCTCCCGGCCTAAAA................................................. 23 1 2 18.00 36 1 35 0 0 0 0
...................................................................................................AATTGCACATCTCCCGGCCTATA.................................................. 23 1 1 18.00 18 16 2 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCAAT................................................... 22 1 1 18.00 18 18 0 0 0 0 0
................................................................................................ATCTATTGCACATCTCCCGGCCTAT................................................... 25 3 1 18.00 18 17 1 0 0 0 0
...................................................................................................TACTGCACATCTCCCGGCCC..................................................... 20 2 2 18.00 36 36 0 0 0 0 0
...................................................................................................TATTGCACCTCTCCCGGCCTAT................................................... 22 1 1 18.00 18 12 1 5 0 0 0
...................................................................................................TATCGCACATCTCCCGGCCTAA................................................... 22 2 2 18.00 36 36 0 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATAAAT............................................... 26 1 1 18.00 18 7 11 0 0 0 0
....................................................................................................ATTGCACATCTGCCGGCCTAT................................................... 21 1 1 17.00 17 1 16 0 0 0 0
...................................................................................................TGTTGCACATATCCCGGCCTAT................................................... 22 2 1 17.00 17 17 0 0 0 0 0
...................................................................................................TATTGCACATCTACCGGCCTATA.................................................. 23 1 1 17.00 17 17 0 0 0 0 0
..................................................................................................CTATTGCACATCTCCCGGCCTATAAA................................................ 26 1 1 17.00 17 8 9 0 0 0 0
...................................................................................................TATTGGACATCTCCCGGCCTATA.................................................. 23 1 1 17.00 17 16 1 0 0 0 0
...................................................................................................TATGGCACATCTCCCGGCCTATT.................................................. 23 2 1 17.00 17 17 0 0 0 0 0
...................................................................................................TATTGAACATCTCCCGGCCTAT................................................... 22 1 1 17.00 17 11 6 0 0 0 0
...................................................................................................AATTGCACATCTCCCGGCCTA.................................................... 21 1 2 16.50 33 30 3 0 0 0 0
...................................................................................................TATTGCAAATCTCCCGGCCT..................................................... 20 1 2 16.50 33 30 1 2 0 0 0
...................................................................................................TATGGCACATCTCCCGGCCTAA................................................... 22 2 2 16.50 33 33 0 0 0 0 0
...................................................................................................TATTGCACATCACCCGGCCTA.................................................... 21 1 2 16.00 32 2 30 0 0 0 0
...................................................................................................TATTGCACATCTCCAGGCCT..................................................... 20 1 2 16.00 32 29 1 2 0 0 0
....................................................................................................ATTGCACTTGTCCCGGCCTATAAAA............................................... 25 2 1 16.00 16 1 15 0 0 0 0
....................................................................................................AGTGCACATCTCCCGGCCTATA.................................................. 22 1 1 16.00 16 16 0 0 0 0 0
...................................................................................................TATTGCACATATCCCGGCCTATAA................................................. 24 1 1 16.00 16 15 0 1 0 0 0
...................................................................................................TATTGCACATCTCCCGCCCT..................................................... 20 1 2 16.00 32 29 2 1 0 0 0
...................................................................................................TGTTGCACATCTCCCTGCCTAT................................................... 22 2 1 16.00 16 16 0 0 0 0 0
....................................................................................................ATTGCACATCTCCCGGCCC..................................................... 19 1 2 15.50 31 31 0 0 0 0 0
...................................................................................................TATTGCACATCTCCGGGCCTAT................................................... 22 1 1 15.00 15 11 4 0 0 0 0
..................................................AGGACGGTATTTGTGACAATAAA................................................................................................... 23 2 1 15.00 15 2 12 1 0 0 0
...................................................................................................TATAGCACATCTCCCGGCCTATAA................................................. 24 1 1 15.00 15 15 0 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATAAC................................................ 25 1 1 15.00 15 11 4 0 0 0 0
...................................................................................................TATTGCACATCGCCCGGCCTATAAA................................................ 25 1 1 15.00 15 0 15 0 0 0 0
...................................................................................................TATTGCACACCTCCCGGCCT..................................................... 20 1 2 15.00 30 26 1 3 0 0 0
....................................................................................................AGTGCACATCTCCCGGCCTA.................................................... 20 1 2 14.50 29 29 0 0 0 0 0
...................................................................................................TGTTGCACATCTCCCGGCC...................................................... 19 1 2 14.50 29 29 0 0 0 0 0
...................................................................................................CATTGCACATCTCCCGGCCT..................................................... 20 1 2 14.50 29 28 0 1 0 0 0
....................................................................................................ATTGCACATCTCCCGGCCTATAAAAAA............................................. 27 1 1 14.00 14 0 14 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATCA................................................. 24 1 1 14.00 14 3 8 3 0 0 0
..................................................................................................CTATTGCACACCTCCCGGCCTAT................................................... 23 2 1 14.00 14 14 0 0 0 0 0
...................................................................................................TATTGCACATCCCCCGGCCTA.................................................... 21 1 2 14.00 28 13 13 2 0 0 0
....................................................................................................ATTGCACATCTCCCGGCCTACAAAAA.............................................. 26 2 1 14.00 14 0 14 0 0 0 0
..................................................................................................CTATTGCACATCTCCCGGCCTAA................................................... 23 2 2 13.50 27 22 5 0 0 0 0
...................................................................................................GATTGCACATCTCCCGGCCT..................................................... 20 1 2 13.50 27 21 6 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCCA.................................................... 21 1 2 13.50 27 21 2 4 0 0 0
...................................................................................................TACTGCACATCTCCCGGCCTAAA.................................................. 23 2 2 13.50 27 27 0 0 0 0 0
...................................................................................................TATTGCGCATCTCCCGGCCTA.................................................... 21 1 2 13.50 27 19 4 4 0 0 0
...................................................................................................TATTGCACATCTCCAGGCCTATAA................................................. 24 1 1 13.00 13 12 1 0 0 0 0
..................................................AGGACGGTATTTGTGACAATATGAA................................................................................................. 25 0 1 13.00 13 3 4 6 0 0 0
...................................................................................................TGTTGCACATCTCCCGGCCTATC.................................................. 23 2 1 13.00 13 13 0 0 0 0 0
....................................................GACGGTATTTGTGACAATATG................................................................................................... 21 0 1 13.00 13 2 11 0 0 0 0
...................................................................................................TACTGCACATCTCCCGGCCTATAAA................................................ 25 1 1 13.00 13 10 3 0 0 0 0
...................................................................................................TAATGCACATCTCCCGGCCTAT................................................... 22 1 1 13.00 13 7 6 0 0 0 0
...................................................................................................AATTGCACATCTCCCGGCCT..................................................... 20 1 2 13.00 26 21 4 1 0 0 0
..................................................ATGTCGGTATTTGTGACAATAT.................................................................................................... 22 2 1 13.00 13 13 0 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTAAAAAAAAA............................................ 29 3 1 13.00 13 0 13 0 0 0 0
...................................................................................................TACTGCACATCTACCGGCCTAT................................................... 22 2 1 13.00 13 13 0 0 0 0 0
...................................................................................................TATTGCGCATCTCCCGGCCTATA.................................................. 23 1 1 13.00 13 13 0 0 0 0 0
....................................................................................................ATTGCACATCTCCCGGCCTATC.................................................. 22 1 1 13.00 13 1 12 0 0 0 0
...................................................................................................TATTGCACATCTCCCGTCCTA.................................................... 21 1 2 12.50 25 22 0 2 1 0 0
....................................................................................................ATTGCACATCTACCGGCCTAT................................................... 21 1 1 12.00 12 2 10 0 0 0 0
...................................................................................................TATTGCACATCACCCGGCCT..................................................... 20 1 2 12.00 24 1 23 0 0 0 0
.....................................................................................................TTGCACATCTCCCGGCCTATAAA................................................ 23 0 1 12.00 12 0 12 0 0 0 0
...................................................................................................TATTGCAAATCTCCCGGCCTATAA................................................. 24 1 1 12.00 12 12 0 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCCATA.................................................. 23 1 1 12.00 12 11 1 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTGTA.................................................. 23 1 1 12.00 12 11 0 1 0 0 0
...................................................................................................TATTGCACATCTCCCAGCCTA.................................................... 21 1 2 12.00 24 16 0 7 1 0 0
..................................................AGGACGGTATTTGTGACAATATGCC................................................................................................. 25 2 1 12.00 12 9 3 0 0 0 0
...................................................................................................TATTGCACATGTCCCGGCCTAT................................................... 22 1 1 12.00 12 4 7 1 0 0 0
...................................................................................................TATTGCACATCTCCCGCCCTA.................................................... 21 1 2 11.50 23 21 0 2 0 0 0
...................................................................................................TATTGCACATCTCCCGCCCTATA.................................................. 23 1 1 11.00 11 11 0 0 0 0 0
...................................................................................................TTTTGCACATCTCCCGGCCTAA................................................... 22 2 2 11.00 22 22 0 0 0 0 0
...................................................................................................TATTGCACATCGCCCGGCCTATAA................................................. 24 1 1 11.00 11 0 11 0 0 0 0
....................................................................................................ATTGCACATCTCCCGGCCTAAAAAA............................................... 25 1 1 11.00 11 0 11 0 0 0 0
..................................................AGGACGGTATTTGTGACAATAA.................................................................................................... 22 1 1 11.00 11 1 8 1 1 0 0
....................................................................................................ATTGCACATCTCCCGGCCTACAAA................................................ 24 1 2 11.00 22 4 17 1 0 0 0
...................................................................................................TATTGCACATCTACCGGCCT..................................................... 20 1 2 11.00 22 21 0 1 0 0 0
...................................................................................................TATTGCACATCTCCTGGCCTA.................................................... 21 1 2 10.50 21 12 5 4 0 0 0
...................................................................................................TATTGCACACTTCCCGGCCTTT................................................... 22 3 2 10.50 21 15 6 0 0 0 0
..................................................................................................ATATTGCACATCTCCCGGCCTA.................................................... 22 0 2 10.50 21 9 12 0 0 0 0
..................................................................................................CTATTGCACATCTCCCGGCCC..................................................... 21 2 2 10.50 21 21 0 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGCCTATCCC................................................ 25 3 1 10.00 10 0 10 0 0 0 0
..................................................ATGACGGTATTTGTGACAATATA................................................................................................... 23 2 1 10.00 10 10 0 0 0 0 0
..................................................................................................CTATTGCACATCTCCCGGCCTAAA.................................................. 24 2 2 10.00 20 17 3 0 0 0 0
...................................................................................................TATTGCACATCTCCCGGACTAT................................................... 22 1 1 10.00 10 3 2 4 0 1 0
....................................................................................................CTTGCACATCTCCCGGCCTAT................................................... 21 1 1 10.00 10 9 1 0 0 0 0
..................................................................................................GTATTGCACATCTCCCGGCCTA.................................................... 22 1 2 10.00 20 0 20 0 0 0 0
.....................................................................................................TGGCACATCTCCCGGCCTAT................................................... 20 1 1 10.00 10 10 0 0 0 0 0
...................................................................................................TGTTGCAAATCTCCCGGCCTAT................................................... 22 2 1 10.00 10 10 0 0 0 0 0
...................................................................................................TATTGCACATCCCCCGGCCT..................................................... 20 1 2 10.00 20 8 10 2 0 0 0
...................................................................................................TATTGCACATCTCCCAGCCTATA.................................................. 23 1 1 10.00 10 8 2 0 0 0 0
......................................................................................................TGCACATCTCCCGGCCTATA.................................................. 20 0 1 10.00 10 7 3 0 0 0 0
...................................................................................................TATTGCACATCTCCCTGCCT..................................................... 20 1 2 10.00 20 12 3 3 1 0 1
...................................................................................................TATTGCAAATATCCCGGCCTAT................................................... 22 2 1 10.00 10 10 0 0 0 0 0
...................................................................................................TATTGCAAATCTCCCGTCCTAT................................................... 22 2 1 10.00 10 10 0 0 0 0 0
...................................................................................................TATTGGACATCTCCCGGCCT..................................................... 20 1 2 9.50 19 18 0 1 0 0 0

Anti-sense strand reads

ATTCAAAGTTTTCTTTTTTGCTTTTTACAGTTTAAAAGTCGACGCAAACGTCCTGCCATAAACACTGTTATACTTAATAACTTTAGTTAAATAAGTCGTATAACGTGTAGAGGGCCGGATATTTTGTCAACACTCGGGCAGCTAAATTTACTAAACACATAAATTTTATTTA

************************************..((((((..((((.(((.(((....((((.((((((((((.((((....))))..)))))...)))))))))....))).))).)))).)))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M046

female body

 V110

male body
.............................................................................TTACTTTAGTCAAATTAGTCGTATA...................................................................... 25 3 1 1.00 1 1 0
.....................................................................................................................................TGGGGCAGCTAAACTTACGA................... 20 3 12 0.08 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6496:9090413-9090584 - dmo_21 confident TAAGTTTCAAAAGAAAAAACGA------------AAA--------AT--GT----------------------------------------CAAATTT-TCAGCTGC------GTTTGCAGGACGGTATTTGTGACAATATGAATTATTGAAATCAAT-TT--ATTCAGCATATTGCACATCTCCCGGCCTATAAAACAGTTGTGAGCCCGTCGATT---T-----------------------------AAATGATTTGTGTATTTAAAATAAAT
droVir3 scaffold_12875:13668858-13669020 - dvi-mir-311 Known_mirbase CATGAAAAG----TTAAAGCTG--GA--------AAA--------ACTAG--T-----------G----------------------------CGTCC-GCATGACC------ATTTTAAGGACGGTATTTGTGACAATATGTGCAG-TTAAATCAAT-TT--GTTTAGCATATTGCACATCTCCCGGCCTAAAAATGAACCGTGCTCTCTTCGATATATGGAACAT---------------------------------------TAAAACAATT
droGri2 scaffold_15245:17564421-17564594 + dgr_43 confident TAAGCATCT----TGCAATTT----------------------------------ATATGGCTTGCAGTTATCTGCA------------------------TTAACC------ATTTTCAGGATGGAAGCTGTGACAATATGTAGGT-TTTAATTAAT-TTATATTTCATATATTGCACACCTCCCGGCCTATAAATGATTCTTGAGCTCCTCGATT---T---T---------GTTTATATATCTAA----A--------GTGT-TGA----AAA
dp5 3:8679882-8680000 + dps-mir-92c Known_mirbase AGCT-------------------------------------------------------------------------------------------------------GCTTTGATTTGTAGGCCGTGGTTCTTGCAAATACGGA----------------T--TCATAACGTATTGCACTAGCCCCGGTCCAAAAAACAATAGCAA---CGCCGGCAA------CAG---CAAAGTATGTACAATTAT------------------------AGTG
droPer2 scaffold_4:2566613-2566755 + dpe_91 AGCT-------------------------------------------------------------------------------------------------------GCTTTGATTTGTAGGCCGTGGTTCTTGCAAATACGAA----------------T--TCATAACGTATTGCACTAGCCCCGGTCCAAAAAACAATAGCAA---CGCCGGCAA------CAG---CAAAGTATGTACAATTATTCAAAGAATCTTCACATTTTTCATGAAT
droAna3 scaffold_13266:4132883-4133036 + dan-mir-311a Known_mirbase GATATT-------------------------------------------------ATACGAACAGCAGCGATCGCTA--TCTGAGAGAAATATTTGTT-GCCAGATT------ATCTTCAGGACGGTATTTGTGTCAATATGGAT--------------AT--TTCAAACATATTGCACTTATACCGGCCTGATGATCTCCGGCGC--TCGTCATCT---G---T-GACT---------------------------------------AAAAGTG
droBip1 scf7180000396427:2575661-2575756 + A-----------------------------------------------------------------------------------------------------------------------GGTCGGTATTTGTGACAATATGAT---------------AT--TTCAATCATATTGCACTTGTACCGGCCTGATAATATCTGGCAT-----TCGTCATCTGTGAGTCTGT---------------------------------------GAAAAGT
droFic1 scf7180000454039:1776022-1776116 - ------------------------------------------------------------------------------------------------------------------------GGACGGAAGATGCGCCAGTATGCGG-----------A--TT--TTTAAGCATATTGCACATTTACCGGCCTAGTAATGCACTGGCTATTCATCAATT---A---T-TTAT---------------------------------------GCAAATG
droRho1 scf7180000780104:82067-82200 - AAAC-GG------------CGA------------AAA--------GT--GTTC-----------A------------------------AA--CTAAGTCCTAGGTT------GTTTTTCGGACGGTATTTGTGACAATATGCTT-----------A--AT--TTTAGACATATTGCACATTTACCGGCCTGAAATTAACATGGATATTCTTCGATAT------TT-------------------------------------------GTAAAGT
dm3 chr2R:16471355-16471530 - dme-mir-311 Known_mirbase TAAT-------------------------------TAGTTTTGTTGT--GTTTTTAAACTCCTTGCAATAGGCGGCAAGACGGTGAAAAATCGAAATT-TCTAGATC------ATTTTTCGGACGGTATATGGGTTAATATTTC------------AT-TT--GTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAA------GTGAAA---------------------------------------AAAAAGT
droSim2 2r:17040842-17041028 - dsi-mir-311 Known_mirbase TTACTTTAAAAAGAATCATCATTGAGCAAAGTAATTAGTTTTTT---------------TCCTTGCAATAGGCGGCAAGACAGTGAAAAATCGAAATT-TCTAGATC------ATTTTTCGGACGGTATATGAGTCAATATTTTT-----------TTTTT--TTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAGCATCGAA------------------------------------------------------AAAGAA
droSec2 scaffold_1:14025491-14025604 - dse-mir-310 Known_mirbase TTAGCATCGAAAAAGAAAAATA------------AAA--------GT--GCTT-----------G----------------------------CAAAA-ACATAAAC------ATTTGCAGGACGGGTCGTGTGTCAGTGTATTT-----------AC-TT--CTTAACTATATTGCACACTTCCCGGCCTTTAAA--------------------------------------------------------------------------------
droYak3 2R:12724917-12725011 + dya-mir-310 Known_mirbase CGAA-------------------------------AA--------GT--GCTT-----------G----------------------------CAAAT-ACACAAAC------ATTTGCAGGACGGGTCGTGTGGCAGTGTATTG-----------AT-TT--CTTAGCTATATTGCACACTTCCCGCCCTTTAAA--------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TAAGTTTCAAAAGAAAAAACGA------------AAA--------AT--GT----------------------------------------CAAATTT-TCAGCTGC------GTTTGCAGGACGGTATTTGTGACAATATGAATTATTGAAATCAAT-TT--ATTCAGCATATTGCACATCTCCCGGCCTATAAAACAGTTGTGAGCCCGTCGATT---T-----------------------------AAATGATTTGTGTATTTAAAATAAATSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAT...................................................................................22198033.009803342391253110165302857
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTA....................................................................................21217548.5035097120312076211720844108
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATA..................................................................................23110954.001095425072710081733
...........................................................................................................................................................................TATTGCACATCTCCCGGCCT.....................................................................................2028204.5016409741293828447799188
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAA.................................................................................2414601.0046011728871127831
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAAA................................................................................2513822.0038223212750351319
............................................................................................................................................................................ATTGCACATCTCCCGGCCTAT...................................................................................2112956.00295622762006780
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATT..................................................................................2312262.002262755170114881
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAA...................................................................................2221986.0039721546771123452
.......................................................................................................................AGGACGGTATTTGTGACAATATG......................................................................................................................................2311845.00184510291530264219
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAAAA...............................................................................2611390.00139013091400616
.......................................................................................................................AGGACGGTATTTGTGACAATAT.......................................................................................................................................2211011.00101127176106621
...........................................................................................................................................................................TATTGCACATCTCCCGGCCC.....................................................................................202903.501807310018030
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAAAAA..............................................................................271662.0066265400062
...........................................................................................................................................................................TATTGCACATCTCCCGGCC......................................................................................192434.5086916512016892
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATC..................................................................................231417.004172072002035
............................................................................................................................................................................ATTGCACATCTCCCGGCCTA....................................................................................202389.507796025001684
.............................................................................................................................................................................TTGCACATCTCCCGGCCTAT...................................................................................201288.002881390001490
............................................................................................................................................................................ATTGCACATCTCCCGGCCTATA..................................................................................221249.002491270001220
............................................................................................................................................................................ATTGCACATCTCCCGGCCT.....................................................................................192233.50467379010870
............................................................................................................................................................................ATTGCACATCTCCCGGCCTATAAA................................................................................241205.0020519610080
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATG..................................................................................231167.0016785500770
............................................................................................................................................................................ATTGCACATCTCCCGGCCTATAA.................................................................................231157.00157107100490
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTT....................................................................................212144.5028914710011265
........................................................................................................................GGACGGTATTTGTGACAATATG......................................................................................................................................221116.0011611500010
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTC....................................................................................212102.502051491301366
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAT.................................................................................24189.008925000640
.......................................................................................................................AGGACGGTATTTGTGACAATATA......................................................................................................................................23186.008623500580
............................................................................................................................................................................ATTGCACATCTCCCGGCCTATT..................................................................................22182.008254000280
...........................................................................................................................................................................TATTGCACATCTCCCGGCCA.....................................................................................20281.00162117301410
..........................................................................................................................................................................ATATTGCACATCTCCCGGCCTAT...................................................................................23180.00807600040
.......................................................................................................................AGGACGGTATTTGTGACAATA........................................................................................................................................21179.007924200521
............................................................................................................................................................................ATTGCACATCTCCCGGCCTATAAAA...............................................................................25171.00716700040
..............................................................................................................................................................................TGCACATCTCCCGGCCTAT...................................................................................19154.005430200220
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAG...................................................................................22253.0010664400353
............................................................................................................................................................................ATTGCACATCTCCCGGCCTAA...................................................................................21252.5010576000290
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATTT.................................................................................24146.00469000361
...............................................................................................................................................................................GCACATCTCCCGGCCTAT...................................................................................18144.004429000150
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATCC.................................................................................24143.00434200010
..........................................................................................................................................................................ATATTGCACATCTCCCGGCCT.....................................................................................21242.008422501560
.......................................................................................................................AGGACGGTATTTGTGACAATATGA.....................................................................................................................................24139.003916500180
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAC.................................................................................24139.003912200250
........................................................................................................................GGACGGTATTTGTGACAATAT.......................................................................................................................................21138.00383700010
.......................................................................................................................AGGACGGTATTTGTGACAATAC.......................................................................................................................................22130.00300000300
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAG.................................................................................24130.00301920081
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATTC.................................................................................24130.003018000111
...........................................................................................................................................................................TATTGCACATCTCCCGGC.......................................................................................18228.505740400130
.......................................................................................................................AGGACGGTATTTGTGACAATATGC.....................................................................................................................................24128.00287300180
.............................................................................................................................................................................TTGCACATCTCCCGGCCTA....................................................................................19227.505534000210
............................................................................................................................................................................ATTGCACATCTCCCGGCCTATAAAAA..............................................................................26127.00272700000
.......................................................................................................................AGGACGGTATTTGTGACAATATGAAA...................................................................................................................................26127.00272430000
.............................................................................................................................................................................TTGCACATCTCCCGGCCTATA..................................................................................21127.002711000160
.............................................................................................................................................................................TTGCACATCTCCCGGCCT.....................................................................................18223.504724000230
.......................................................................................................................AGGACGGTATTTGTGACAAT.........................................................................................................................................20123.002311100110
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTG....................................................................................21222.00449200330
.............................................................................................................................................................................TTGCACATCTCCCGGCCTATAA.................................................................................22120.00207000130
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAAT................................................................................25120.002010000100
.......................................................................................................................AGGACGGTATTTGTGACAATATGT.....................................................................................................................................24120.00207200110
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAAAT...............................................................................26118.00181100070
............................................................................................................................................................................ATTGCACATCTCCCGGCCC.....................................................................................19215.50310000310
.......................................................................................................................AGGACGGTATTTGTGACAATAAA......................................................................................................................................23115.00151210020
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAAC................................................................................25115.00154000110
.......................................................................................................................AGGACGGTATTTGTGACAATATGAA....................................................................................................................................25113.0013460030
.........................................................................................................................GACGGTATTTGTGACAATATG......................................................................................................................................21113.00131100020
............................................................................................................................................................................ATTGCACATCTCCCGGCCTATC..................................................................................22113.00131200010
.............................................................................................................................................................................TTGCACATCTCCCGGCCTATAAA................................................................................23112.00121200000
.......................................................................................................................AGGACGGTATTTGTGACAATATGCC....................................................................................................................................25112.0012300090
.......................................................................................................................AGGACGGTATTTGTGACAATAA.......................................................................................................................................22111.0011810011
..........................................................................................................................................................................ATATTGCACATCTCCCGGCCTA....................................................................................22210.50211200090
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATCCC................................................................................25110.00101000000
..............................................................................................................................................................................TGCACATCTCCCGGCCTATA..................................................................................20110.0010300070
droVir3
CATGAAAAG----TTAAAGCTG--GA--------AAA--------ACTAG--T-----------G----------------------------CGTCC-GCATGACC------ATTTTAAGGACGGTATTTGTGACAATATGTGCAG-TTAAATCAAT-TT--GTTTAGCATATTGCACATCTCCCGGCCTAAAAATGAACCGTGCTCTCTTCGATATATGGAACAT---------------------------------------TAAAACAATTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................................................................................AGGACGGTATTTGTGACAATATG......................................................................................................................................231406466.0040646656081293295393562543545057487452860961000106180014621860164760294839103977833297219447315391883290324184068921345433221015412011557145761015238323210109133163114011621385396153996748994257932452714688187791948725355332939707106472473530218
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAA...................................................................................221348798.00348798701134097784558382125665541455927411304031294088035535434388357186252813397542114783080792967407980764981698103223922075130095097978350810322955782391521321027342830746382821487442597678748996740996372812042422519261182952491722908320256896853
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAA..................................................................................231183276.0018327640473545184123102922011268458430100053400125295119903379203794252530888060002155093675962361872809326741637441315259254173352701477438292602388319814022812335108251036583971259311129543169737129840783586062533965669049
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTA....................................................................................212112732.5022546537111924658645426728236134151102029171410501297123211013186263741933078175412487461946719923775757229904369581687194142034332738217816421852149999919065371013430289257196684287281090931010415888770655139811777116133117999614136751269440972662354058975217
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAA.................................................................................241103384.0010338461279496624131704222232300000040040130264315115041076837133226041774205650602011181019544531515513910160621392146239107114534600014171077944686916004392136301949236521152809558668235992744610511
.......................................................................................................................AGGACGGTATTTGTGACAATAT.......................................................................................................................................22191860.009186046513287190157726823142112628000001602132551775223512501831072622594314177619357146851811581239110870681045811975353639011521627030295257121541216113262225424201270172015742311110623226344878509821
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAA................................................................................25160457.00604572119021807030304410570000001001675233097317715155261107175410042984796101245130803715137521577230002122100099564064135831363568868039343436047132825678502257118535
...........................................................................................................................................................................TATTGCACATCTCCCGGCCT.....................................................................................20248401.00968021497810016384631383593013428162111882113040214735411406160910151794932949799452115523322943118205268292461324728837187375462746440735228157718230616911484797412820774952001019964735594439816021403108910861337156443032656295955326040
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAAA...............................................................................26119354.0019354006823920003003351000000000725511840043111531702372558861833909181031002200210100024000449291205018541023117130707664999571995180619602845
.......................................................................................................................AGGACGGTATTTGTGACAATATA......................................................................................................................................2319847.009847271171000010065770000001001151532233462230211445281062154989055545540102334334161912011156100022812791241141219818510215313316310793543748611032
.......................................................................................................................AGGACGGTATTTGTGACAATA........................................................................................................................................2118564.0085641130231202011320420000000001355613135186123840025634925221719102211593741117260000712817842855815747430549561545749121123313486
.......................................................................................................................AGGACGGTATTTGTGACAATATGA.....................................................................................................................................2417654.007654803711604140334800000020047564178120271592412131051572611371731200010201100000011500031401338137193621208151324626229234611711
.......................................................................................................................AGGACGGTATTTGTGACAATATGTG....................................................................................................................................2516377.00637700650878425109115877110001016300781872261118105110675381196165361364458300200000000100000000204012619614611316728426114118621231312225295877
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAAAA..............................................................................2715469.0054690031981000000012000000000009843160190001920104602934890160000010001000000210001921045274692402522811914227553526510753
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAT..................................................................................2314335.0043350017311130000002120000000000444406148232141891087621161041218128811143683821130021800028581681361564464442333083103121619576125135
.......................................................................................................................AGGACGGTATTTGTGACAATATGT.....................................................................................................................................2413802.003802150178516438227614290000006009253412110311107174203047795112236414386074593330016100001923451382339144155134115841402888578211281
.......................................................................................................................AGGACGGTATTTGTGACAATATGAAA...................................................................................................................................2613794.0037940039230202096338000000000346412365810219108511034184230001000000001000000170006632631565306811631462057686238305
.......................................................................................................................AGGACGGTATTTGTGACAATATAAA....................................................................................................................................2513032.003032004612010101220600000000066617165321213740536040456240121010001000000000040005215470466214103112117867106177215
...........................................................................................................................................................................TATTGCACATCTCCCGGCC......................................................................................1922906.505813621296120173723020910000011500537534492130301625669745815647515214635212018141526712762600511710115692421171836156114284654744111702846171149
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAG..................................................................................2312692.00269230713920000001800000000005212542212818836681473910352321145211102222010100060001013181163157173150879011912717292112150212
.......................................................................................................................AGGACGGTATTTGTGACAATATGAA....................................................................................................................................2512569.00256920123100010016500000000012121904331027205783216857001010010200001000012000231243541122918208135181816477133180
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAC..................................................................................2312489.002489002643111000106000000070131188133209130111318132031210648535210111002130002513712619118917986129121144166171182173206
.......................................................................................................................AGGACGGTATTTGTGACAATATAA.....................................................................................................................................2412017.002017101602001000456000000000641261154546111731636134895100010011000000000000000102118247242144054103105463588113
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAC...................................................................................2221958.503917804923541921100030200100001600331312188572624618123114304412221242321010000031000089128941341561404865831118915212831
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAC.................................................................................2411569.001569201325100000013000000000014322103777145963097223256021120300011300056151128133293126273034112152154158206
............................................................................................................................................................................ATTGCACATCTCCCGGCCTAA...................................................................................2111405.001405001116541000000012000000000061115310313061010820010100000100000000010000856221182410211932342
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAC................................................................................2511346.0013460067000000002000000000002040000050161512003310010100100000000000001141251364152528102131141237263
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAT.................................................................................2411133.0011330024340000000010000000100011989111262125015174827000411935304251000000000004847634810662285532745368524859
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAG.................................................................................2411131.00113100231200000000400000010000348521021101613251240135132031041000001010004784807473412939476669726192121
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAAC...............................................................................261865.00865009400000000000000000001301000001012611001100000001000000000000017769592200015191115185179
............................................................................................................................................................................ATTGCACATCTCCCGGCCTAAA..................................................................................221811.008110062055000000002000000000002581330190106231210000000001000000000000000333258244312324
.......................................................................................................................AGGACGGTATTTGTGACAATATT......................................................................................................................................231735.007356042201000132200000010041233131751324220299348451368352300214140000475891028141791686821184658
...........................................................................................................................................................................TATTGCACATCTCCCGGCCA.....................................................................................202635.0012700023017203030111930000002001025828923311412316146327610200020010200000000610008163147831231037713113134
...........................................................................................................................................................................TATTGCACATCTCCCGGC.......................................................................................182627.5012551401828030305050000000200124724303411751052369551014414014323121000000020111001408936102754564859542934495649
.......................................................................................................................AGGACGGTATTTGTGACAA..........................................................................................................................................191607.006071004012100300000000001003709116105142050220017130023012010000030000011925181069139585238203177
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTT....................................................................................212557.5011151602239370102002210000005006161415133627163915220154175525984443102520210035500013271912454954395949464197
.......................................................................................................................AGGACGGTATTTGTGACAAT.........................................................................................................................................201509.0050910172311012004001000070034811616231121727315112411000001100000100000000437775306201022517132926
.......................................................................................................................AGGACGGTATTTGTGACA...........................................................................................................................................181447.004471003030211120130000003003127355462143484200100000000000000000000424440421341179181944372722
..........................................................................................................................ACGGTATTTGTGACAATATG......................................................................................................................................201394.003942020000000010000000000011013000000002000000000000000000000000000044971673452408270056
............................................................................................................................................................................ATTGCACATCTCCCGGCCTA....................................................................................202393.5078710641270000000020000000000112220002509856100000000210201000000200002032381276811362
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAAAC..............................................................................271378.00378004100000000000000000000002000002011101002000100001000000000000003726200000002249506493
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTG....................................................................................212373.5074710018900000020000000000001113731411241162145276148232413503000000017000139595413624277123271551721
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAG...................................................................................222362.0072470602720200000510000004003135127415811100581710712111021020110100014200079403330344019818272037384753
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAT................................................................................251353.0035300611000000003000000000006140010480111227310011100000000001000300001432242132266153825181734
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTC....................................................................................212344.5068912115010337710020120000000420052534122121119326315063200693141331200100020110600045311142013171163110
.......................................................................................................................AGGACGGTATTTGTGACAATATGTAA...................................................................................................................................261304.003040050100000010000000000007424701011401618381620000001000000000000010002032271801000026351518
.......................................................................................................................AGGACGGTATTTGTGACAATATC......................................................................................................................................231304.003041904300000100100000000000123334522000010031384656172313635002140000221011017171716221875014
............................................................................................................................................................................ATTGCACATCTCCCGGCCT.....................................................................................192295.005900052691000100041000000000020310000401410340000010000010000000000000013102010010032
............................................................................................................................................................................ATTGCACATCTCCCGGCCTAAAA.................................................................................231294.00294002156000000000000000000002130000040359800000000000000000000000004123121310213365
...........................................................................................................................................................................TATTGCACATCTCCCGGCCC.....................................................................................202286.5057313022286500000011200000010021010220241005060030110102000000000160000041216897120112132510
......................................................................................................................AAGGACGGTATTTGTGACAATAT.......................................................................................................................................231252.002520020000030200000000000002010010010131000010001000000000000000002028143017171014121522451726
.......................................................................................................................AGGACGGTATTTGTGACAATATGC.....................................................................................................................................241244.0024440150000010010000000000010454333003212100601000210010100010000006181021241210121127934317
.......................................................................................................................AGGACGGTATTTGTGACAATATGTA....................................................................................................................................251239.002390220000000100000000000000267000140737110000000000000000000000004138332648009328108167
.......................................................................................................................AGGACGGTATTTGTGACAATAA.......................................................................................................................................221231.002311050011102001000000000014142252315355132810200000000000000000000101000141110341100124556
.......................................................................................................................AGGACGGTATTTGTGACAATATGTGA...................................................................................................................................261222.00222000000000000000000010000331012010050753700000000000000000000000001028243233301321742015
........................................................................................................................GGACGGTATTTGTGACAATATG......................................................................................................................................221221.00221001471000000000000000000001045100220215120000000000000000000000001021034531614277
.......................................................................................................................AGGACGGTATTTGTGACAATAAA......................................................................................................................................231216.0021650111000000022000000000010747443205213110000000000010000000010004036311031120111681618
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAAT...............................................................................261201.002010043000000001000000000003040000100191720000001000000000000000000132024163210131018171818
............................................................................................................................................................................ATTGCACATCTCCCGGCCTAAAAA................................................................................241189.001890015300000000000000000000020001000100011100000000000000000000000003001130100013223
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAACA...............................................................................261188.001880000000000000000000000000000000000121789111000000000000000000000000108360100021063117
.....................................................................................................................TAAGGACGGTATTTGTGACAATAT.......................................................................................................................................241185.00185101000004020100000000000131200000011002000001000000000000000000011083972374636951215
.............................................................................................................................................................................TTGCACATCTCCCGGCCTAA...................................................................................201177.001770074171000000010000000000141741001905109900000000000000000000000002020025422010012
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAG................................................................................252159.00318008300000000000000000000301110005044102001200000000000000000100021282221261078892320222936
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAAAAC.............................................................................281151.0015100320000000000000000000000000000100030000000100000000000000000000161417100000710142834
.............................................................................................................................................................................TTGCACATCTCCCGGCCTAAA..................................................................................211145.0014500511500000001100000000001632210107012871000000000000000000000000001022200311021002
......................................................................................................................AAGGACGGTATTTGTGACAATATG......................................................................................................................................241143.00143001001000000010000000000001100000011210001000000102010000000000015924194612313132296
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAATC.................................................................................241135.0013540113000000000000000020000000592901000000043411112000010100000000220013107562010301
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAATT.................................................................................241128.00128005400000000000000000000111100001000100000000010100000000000000212171721101371771113
.........................................................................................................................GACGGTATTTGTGACAATATG......................................................................................................................................211106.0010600800000000000000000000000210000001100000000000000000000000000000879796386514614
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAACA..............................................................................271104.001040000000000000000000000000000000000613296000000000000000000001000000643010000448613
.......................................................................................................................AGGACGGTATTTGTGACAATATGG.....................................................................................................................................241102.00102101000000000000000000001000000000000000000000000000000000001000011415220001121039119
.......................................................................................................................AGGACGGTATTTGTGACAATATCC.....................................................................................................................................241102.00102280800300000000000000000000204555000000001000000000000000000000001000538311820000
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAAG...............................................................................26193.009300600000000000000000000010010000000141001000000000000000000000012485223402557919
...........................................................................................................................CGGTATTTGTGACAATATG......................................................................................................................................19192.009200100000000000000000100000110000000010000000000000000000000000000101221171871700201
...........................................................................................................................................................................TATTGCACATCTCCCGG........................................................................................17285.0017000000000000000000000000000000000000000000000000000000000000000030151114000000183102967
.......................................................................................................................AGGACGGTATTTGTGACAATATGTGT...................................................................................................................................26184.00840000000030021300000000000174010040312000001000100000000000000000055453122652208
............................................................................................................................................................................ATTGCACATCTCCCGGCCTAAAAAA...............................................................................25183.008300711000000000000000000000000000000003000000000000000000000000000010000000000025
...............................................................................................................................................................................GCACATCTCCCGGCCTAA...................................................................................18182.0082002620000000001000000100031100101003022000000000000000000000000071500012105130120
...........................................................................................................................................................................TATTGCACATCTCCCGGCCG.....................................................................................20281.5016310031000000000000000010000100000000000030196813706302024001410100025598105141360062
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAAAT..............................................................................27181.00810060000000002000000000000110000030106200010000000000000000000000213810000014611210
.......................................................................................................................AGGACGGTATTTGTGACAATATGTC....................................................................................................................................25180.00801000000000000000000000000010001000000000000010001100000001010000000015971581800000
.......................................................................................................................AGGACGGTATTTGTGAC............................................................................................................................................17176.00760000000000000000000000000000000000000000000000100000000000000000081119000000181189
droGri2
TAAGCATCT----TGCAATTT----------------------------------ATATGGCTTGCAGTTATCTGCA------------------------TTAACC------ATTTTCAGGATGGAAGCTGTGACAATATGTAGGT-TTTAATTAAT-TTATATTTCATATATTGCACACCTCCCGGCCTATAAATGATTCTTGAGCTCCTCGATT---T---T---------GTTTATATATCTAA----A--------GTGT-TGA----AAASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...........................................................................................................................................................................TATTGCACACCTCCCGGCCTAT...................................................................................22120.0020200
...........................................................................................................................................................................TATTGCACACCTCCCGGCCT.....................................................................................2019.00990
...........................................................................................................................................................................TATTGCACACCTCCCGGCCTA....................................................................................2115.00550
.......................................................................................................................AGGATGGAAGCTGTGACAATAT.......................................................................................................................................2215.00505
.......................................................................................................................AGGATGGAAGCTGTGACAATATG......................................................................................................................................2314.00404
...........................................................................................................................................................................TATTGCACACCTCCCGGCCTT....................................................................................2113.00330
.......................................................................................................................AGGATGGAAGCTGTGACAAT.........................................................................................................................................2013.00312
.......................................................................................................................AGGATGGAAGCTGTGACAA..........................................................................................................................................1912.00211
.......................................................................................................................AGGATGGAAGCTGTGACAATA........................................................................................................................................2112.00202
............................................................................................................................................................................ATTGCACACCTCCCGGCCT.....................................................................................1912.00220
............................................................................................................................................................................ATTGCACACCTCCCGGCCTAT...................................................................................2111.00110
...........................................................................................................................................................................TATTGCACACCTCCCGGCC......................................................................................1911.00110
.......................................................................................................................AGGATGGAAGCTGTGACAATATGT.....................................................................................................................................2411.00101
............................................................................................................................................................................ATTGCACACCTCCCGGCCTA....................................................................................2011.00110
.......................................................................................................................AGGATGGAAGCTGTGACA...........................................................................................................................................1811.00101
dp5
AGCT-------------------------------------------------------------------------------------------------------GCTTTGATTTGTAGGCCGTGGTTCTTGCAAATACGGA----------------T--TCATAACGTATTGCACTAGCCCCGGTCCAAAAAACAATAGCAA---CGCCGGCAA------CAG---CAAAGTATGTACAATTAT------------------------AGTGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCA....................................................................................2111490.0014900104252111094070191470
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCC.....................................................................................201898.00898067211615349153340
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAA...................................................................................221826.008260567547361019181150
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACG......................................................................................................................................231637.00637059600410305271
...........................................................................................................................................................................TATTGCACTAGCCCCGGTC......................................................................................191237.00237013784218270410
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAA..................................................................................231188.0018801084047023240
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCA....................................................................................20198.009809700010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAA.................................................................................24193.0093063191401050
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAA...................................................................................21175.007507120001010
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCA.....................................................................................20172.007206210016020
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCT.....................................................................................20169.00690291214210110
............................................................................................................................................................................ATTGCACTAGCCCCGGTCC.....................................................................................19165.006506230000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCC....................................................................................21162.0062040547210210
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAA................................................................................25161.0061044130000040
.......................................................................................................................AGGCCGTGGTTCTTGCAAATAC.......................................................................................................................................22161.006106510021460
.......................................................................................................................AGGCCGTGGTTCTTGCAAATA........................................................................................................................................21141.0041040001150210
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCG.....................................................................................20141.004108010622040
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCCC...................................................................................22126.00260505025090
.......................................................................................................................AGGCCGTGGTTCTTGCAAAT.........................................................................................................................................20125.002503000030190
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAAA...............................................................................26121.002101920000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCT....................................................................................21116.00160600004060
...........................................................................................................................................................................TATTGCACTAGCCCCGGTTT.....................................................................................20115.00150401032050
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACGA.....................................................................................................................................24115.00150910000050
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAA..................................................................................22114.001401300000010
...........................................................................................................................................................................TATTGCACTAGCCCCGGTT......................................................................................19114.001404000000100
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAT...................................................................................22114.00140500200070
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAT..................................................................................23113.00130520000150
............................................................................................................................................................................ATTGCACTAGCCCCGGTC......................................................................................18112.001201200000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTTTT....................................................................................21111.00110100012070
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTT....................................................................................21111.00110300001070
...........................................................................................................................................................................TATTGCACTAGCCCCGGT.......................................................................................18110.00100601002010
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAAA.................................................................................23110.00100910000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAC...................................................................................2219.0090710001000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAAAA..............................................................................2718.0080800000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTAA.....................................................................................2018.0080700000010
.......................................................................................................................AGGCCGTGGTTCTTGCAAATAA.......................................................................................................................................2218.0080000000080
...........................................................................................................................................................................TATTGCACTAGCCCCGGTA......................................................................................1917.0070500100010
............................................................................................................................................................................ATTGCACTAGCCCCGGTCA.....................................................................................1917.0070700000000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACGT.....................................................................................................................................2416.0060100000050
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAAAA................................................................................2416.0060600000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTTA.....................................................................................2016.0060000002040
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCCT...................................................................................2216.0060200000040
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAG...................................................................................2216.0060500001000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCTT...................................................................................2216.0060200001030
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACC......................................................................................................................................2315.0050001010030
.............................................................................................................................................................................TTGCACTAGCCCCGGTCC.....................................................................................1815.0050500000000
.............................................................................................................................................................................TTGCACTAGCCCCGGTCCA....................................................................................1915.0050400000010
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTC....................................................................................2115.0050101010020
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCCCC..................................................................................2325.00100303002020
.............................................................................................................................................................................TTGCACTAGCCCCGGTCCAA...................................................................................2015.0050401000000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACA......................................................................................................................................2314.0040200000020
.......................................................................................................................AGGCCGTGGTTCTTGCAAAA.........................................................................................................................................2014.0040000000040
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTTC...................................................................................2214.0040000000040
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCG....................................................................................2114.0040200110000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAG................................................................................2513.0030200000010
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACGG.....................................................................................................................................2413.0030000000030
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCATTT.................................................................................2413.0030000000030
........................................................................................................................GGCCGTGGTTCTTGCAAATACG......................................................................................................................................2213.0030300000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAT.................................................................................2413.0030201000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTTT...................................................................................2213.0030100010010
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAAAAA...............................................................................2512.0020200000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAG..................................................................................2312.0020020000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCATT..................................................................................2312.0020100001000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAAAAAA..............................................................................2612.0020200000000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATC........................................................................................................................................2112.0020000000020
...........................................................................................................................................................................TATTGCACTAGCCCCGGTTTG....................................................................................2112.0020000001010
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACGGA----------------T--.................................................................................................................2612.0020000000020
..........................................................................................................................................................................GTATTGCACTAGCCCCGGTCCA....................................................................................2212.0020200000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTCT...................................................................................2212.0020000010010
..........................................................................................................................................................................GTATTGCACTAGCCCCGGTCC.....................................................................................2112.0020200000000
.............................................................................................................................................................................TTGCACTAGCCCCGGTCCAAA..................................................................................2112.0020101000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAG.................................................................................2412.0020110000000
........................................................................................................................GGCCGTGGTTCTTGCAAATA........................................................................................................................................2012.0020200000000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACCC.....................................................................................................................................2412.0020000000020
...........................................................................................................................................................................TATTGCACTAGCCCCGG........................................................................................1712.0020000000020
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAT..................................................................................2212.0020200000000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCT.....................................................................................1911.0010100000000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATT........................................................................................................................................2111.0010000000010
.......................................................................................................................AGGCCGTGGTTCTTGCAAATAAA......................................................................................................................................2311.0010000000010
........................................................................................................................................................................ACGTATTGCACTAGCCCCGGTCCAG...................................................................................2511.0010100000000
.............................................................................................................................................................................TTGCACTAGCCCCGGTCA.....................................................................................1811.0010100000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAGT.................................................................................2411.0010010000000
..............................................................................................................................................................................TGCACTAGCCCCGGTCCAAA..................................................................................2011.0010100000000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCC....................................................................................2011.0010001000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTG....................................................................................2111.0010000000010
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAT................................................................................2511.0010010000000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAT...................................................................................2111.0010100000000
....................................................................................................................................................................CATAACGTATTGCACTAGCCCCGGTCC.....................................................................................2711.0010001000000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCTT...................................................................................2111.0010100000000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATTA.......................................................................................................................................2211.0010100000000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCG....................................................................................2011.0010100000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTTTC....................................................................................2121.0020000000020
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCAC....................................................................................2111.0010100000000
.......................................................................................................................AGGCCGTGGTTCTTGCAA...........................................................................................................................................1811.0010000000010
...........................................................................................................................................................................TATTGCACTAGCCCCGGA.......................................................................................1811.0010000000010
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACT......................................................................................................................................2311.0010000000010
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCATT..................................................................................2211.0010001000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAATT.................................................................................2411.0010000000010
..........................................................................................................................................................................GTATTGCACTAGCCCCGGTC......................................................................................2011.0010100000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAC..................................................................................2311.0010100000000
..............................................................................................................................................................................TGCACTAGCCCCGGTCCAAAAA................................................................................2211.0010100000000
.............................................................................................................................................................................TTGCACTAGCCCCGGTCCAAAG.................................................................................2211.0010010000000
droPer2
AGCT-------------------------------------------------------------------------------------------------------GCTTTGATTTGTAGGCCGTGGTTCTTGCAAATACGAA----------------T--TCATAACGTATTGCACTAGCCCCGGTCCAAAAAACAATAGCAA---CGCCGGCAA------CAG---CAAAGTATGTACAATTATTCAAAGAATCTTCACATTTTTCATGAATSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCA....................................................................................211376.00376529170208
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAA...................................................................................221207.00207118617102
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCC.....................................................................................201200.00200215628509
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAA..................................................................................23156.00560488000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTC......................................................................................19142.00422268303
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCA.....................................................................................20129.00290223004
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCA....................................................................................20128.00280280000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAA...................................................................................21124.00240240000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAA................................................................................25119.00190181000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAA.................................................................................24117.00170152000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCC.....................................................................................19114.00140140000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCT.....................................................................................20112.0012061005
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACG......................................................................................................................................23110.0010091000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCG.....................................................................................2015.005010004
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCT....................................................................................2115.005011003
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAA..................................................................................2214.004040000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACGA.....................................................................................................................................2414.004040000
...........................................................................................................................................................................TATTGCACTAGCCCCGGT.......................................................................................1814.004040000
.......................................................................................................................AGGCCGTGGTTCTTGCAAAT.........................................................................................................................................2013.003001002
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAT...................................................................................2213.003020100
.......................................................................................................................AGGCCGTGGTTCTTGCAAATA........................................................................................................................................2113.003001002
...........................................................................................................................................................................TATTGCACTAGCCCCGGTT......................................................................................1912.002010100
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAT..................................................................................2312.002011000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAAA...............................................................................2612.002020000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCC....................................................................................2112.002000101
.............................................................................................................................................................................TTGCACTAGCCCCGGTCCAA...................................................................................2012.002020000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCGT...................................................................................2212.002000002
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTC....................................................................................2112.002000002
...........................................................................................................................................................................TATTGCACTAGCCCCGGTTA.....................................................................................2012.002010001
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTT....................................................................................2112.002000002
............................................................................................................................................................................ATTGCACTAGCCCCGGTC......................................................................................1812.002020000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCGTT..................................................................................2312.002000002
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAAAA................................................................................2412.002020000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAAAA..............................................................................2711.001010000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACGT.....................................................................................................................................2411.001000001
.............................................................................................................................................................................TTGCACTAGCCCCGGTCCAAA..................................................................................2111.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTA......................................................................................1911.001000001
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCCT...................................................................................2211.001010000
........................................................................................................................GGCCGTGGTTCTTGCAAATACG......................................................................................................................................2211.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAC...................................................................................2211.001010000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACA......................................................................................................................................2311.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAATG.................................................................................2411.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTAT.....................................................................................2011.001001000
..............................................................................................................................................................................TGCACTAGCCCCGGTCCA....................................................................................1811.001010000
..........................................................................................................................................................................GTATTGCACTAGCCCCGGTCCAA...................................................................................2311.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTTT...................................................................................2211.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTTT.....................................................................................2011.001000100
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCCC...................................................................................2111.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTAA.....................................................................................2011.001010000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAC...................................................................................2111.001010000
...............................................................................................................................................................................GCACTAGCCCCGGTCCAA...................................................................................1811.001010000
.............................................................................................................................................................................TTGCACTAGCCCCGGTCA.....................................................................................1811.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTTTT....................................................................................2111.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAG...................................................................................2211.001010000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAT..................................................................................2211.001010000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAAA.................................................................................2311.001010000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCA.....................................................................................1911.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCAC....................................................................................2111.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAGT.................................................................................2411.001000001
droAna3
GATATT-------------------------------------------------ATACGAACAGCAGCGATCGCTA--TCTGAGAGAAATATTTGTT-GCCAGATT------ATCTTCAGGACGGTATTTGTGTCAATATGGAT--------------AT--TTCAAACATATTGCACTTATACCGGCCTGATGATCTCCGGCGC--TCGTCATCT---G---T-GACT---------------------------------------AAAAGTGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGA...................................................................................221104879.0010487912507892243069293119
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAA..................................................................................23113773.0013773104912489232102
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAAA.................................................................................2418865.0088651007777187000
...........................................................................................................................................................................TATTGCACTTATACCGGCC......................................................................................1918002.008002979849000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTG....................................................................................2116004.00600412654440280586
............................................................................................................................................................................ATTGCACTTATACCGGCCTGA...................................................................................2111128.0011287853385000
...........................................................................................................................................................................TATTGCACTTATACCGGCCT.....................................................................................201775.0077515258537001
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAT..................................................................................231560.00560544937051
.......................................................................................................................AGGACGGTATTTGTGTCAATATG......................................................................................................................................231527.00527176260522316
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGC...................................................................................221365.003651431239000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGT...................................................................................221355.003555127030220
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAC..................................................................................231312.0031293021000
.......................................................................................................................AGGACGGTATTTGTGTCAATAT.......................................................................................................................................221205.002051817212030
...........................................................................................................................................................................TATTGCACTTATACCGGCCC.....................................................................................201159.0015911571000
............................................................................................................................................................................ATTGCACTTATACCGGCCTGAA..................................................................................221147.0014764812000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAG..................................................................................231146.00146201213011
............................................................................................................................................................................ATTGCACTTATACCGGCCTGAAA.................................................................................231122.0012265570000
.............................................................................................................................................................................TTGCACTTATACCGGCCTGA...................................................................................201117.0011736810000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAAT.................................................................................241114.0011461080000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGG...................................................................................22198.009832597000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAAC.................................................................................24192.00928795000
............................................................................................................................................................................ATTGCACTTATACCGGCCTG....................................................................................20183.008369131000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGCA..................................................................................23147.004713412000
...........................................................................................................................................................................TATTGCACTTATACCGGCCA.....................................................................................20144.00443356000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGATA.................................................................................24143.00433371200
...........................................................................................................................................................................TATTGCACTTATACCGGCCTA....................................................................................21137.00378290000
............................................................................................................................................................................ATTGCACTTATACCGGCC......................................................................................18137.00370370000
.......................................................................................................................AGGACGGTATTTGTGTCAATATA......................................................................................................................................23136.00366255000
...........................................................................................................................................................................TATTGCACTTATACCGGC.......................................................................................18135.00352264210
.......................................................................................................................AGGACGGTATTTGTGTCAATA........................................................................................................................................21135.00354235012
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGACA.................................................................................24135.00352303000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTT....................................................................................21134.00344255000
.............................................................................................................................................................................TTGCACTTATACCGGCCTGAAA.................................................................................22132.00324271000
........................................................................................................................GGACGGTATTTGTGTCAATATG......................................................................................................................................22128.00282710000
.............................................................................................................................................................................TTGCACTTATACCGGCCTGAA..................................................................................21126.00265201000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGTA..................................................................................23125.002541011000
..............................................................................................................................................................................TGCACTTATACCGGCCTGA...................................................................................19122.00228140000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGATT.................................................................................24121.00219120000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAAAC................................................................................25118.00183150000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGCAA.................................................................................24117.00170170000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTAT...................................................................................22116.00160160000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGGA..................................................................................23116.0016592000
...............................................................................................................................................................................GCACTTATACCGGCCTGA...................................................................................18115.00151122000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAAAT................................................................................25115.00151140000
.......................................................................................................................AGGACGGTATTTGTGTCAATATGA.....................................................................................................................................24115.00151121001
...........................................................................................................................................................................TATTGCACTTATACCGGCCTC....................................................................................21115.00150131100
.......................................................................................................................AGGACGGTATTTGTGTCAATATT......................................................................................................................................23114.00140212000
............................................................................................TTTGTT-GCCAGATT------ATCTTC.............................................................................................................................................................20112.0012093000
............................................................................................................................................................................ATTGCACTTATACCGGCCT.....................................................................................19110.0010811000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAGA.................................................................................24110.0010091000
.......................................................................................................................AGGACGGTATTTGTGTCAAT.........................................................................................................................................20110.0010361000
.......................................................................................................................AGGACGGTATTTGTGTCAATAC.......................................................................................................................................22110.00100100000
..........................................................................................................................................................................ATATTGCACTTATACCGGCCTGA...................................................................................2319.009540000
...........................................................................................................................................................................TATTGCACTTATACCGGCT......................................................................................1918.008080000
.......................................................................................................................AGGACGGTATTTGTGTCAATATGT.....................................................................................................................................2418.008241010
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGTAA.................................................................................2418.008440000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAAAG................................................................................2517.007070000
droBip1
A-----------------------------------------------------------------------------------------------------------------------GGTCGGTATTTGTGACAATATGAT---------------AT--TTCAATCATATTGCACTTGTACCGGCCTGATAATATCTGGCAT-----TCGTCATCTGTGAGTCTGT---------------------------------------GAAAAGTSizeHit CountTotal NormTotal
No Reads
droFic1
------------------------------------------------------------------------------------------------------------------------GGACGGAAGATGCGCCAGTATGCGG-----------A--TT--TTTAAGCATATTGCACATTTACCGGCCTAGTAATGCACTGGCTATTCATCAATT---A---T-TTAT---------------------------------------GCAAATGSizeHit CountTotal NormTotal
No Reads
droRho1
AAAC-GG------------CGA------------AAA--------GT--GTTC-----------A------------------------AA--CTAAGTCCTAGGTT------GTTTTTCGGACGGTATTTGTGACAATATGCTT-----------A--AT--TTTAGACATATTGCACATTTACCGGCCTGAAATTAACATGGATATTCTTCGATAT------TT-------------------------------------------GTAAAGTSizeHit CountTotal NormTotal
No Reads
dm3
TAAT-------------------------------TAGTTTTGTTGT--GTTTTTAAACTCCTTGCAATAGGCGGCAAGACGGTGAAAAATCGAAATT-TCTAGATC------ATTTTTCGGACGGTATATGGGTTAATATTTC------------AT-TT--GTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAA------GTGAAA---------------------------------------AAAAAGTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGA...................................................................................221534179.005341791030736150176397042201000001708001816280101300000428219631660585995877121268787210128319310711267135921711368391000212207000000000000000000331322046934974720319262733425436634125891504636891813416345508244403115573515132802170001260311638613226361143930592144641731040152317999426599568815796519783811001610100400000000000122201901233018420500040093854137163664561214301472101155252586736325594170100107921831782094036521261272083509748615349624729865416190019010014494012461271632013562184027626002000077126431604016420141584299105367652242709533309690019213000135118018587275104889918793949446415110337428124829151312349005868850141236003721105710956122128315
...........................................................................................................................................................................TATTGCACATTCACCGGCCTG....................................................................................21136352.0036352001013201525011000000002475972300100000001285459129837213991643973419529569151613500011140000000000000000000100019661706034810115111493924210132322711530607328154502360010003110402253516120443841119333149138185119102481013668228193150850000000000011030007010000000000230115920554000119048290101151570223000001092644512412533288151320821643298917254261000210008240740111232003907200620000000140082140004189902727084181390357112400120000003031641092715172135841525740024240338120250062150001019139102692224005200
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAA..................................................................................23129931.00299311000041734111016100000004211681000010000054725651531317526862247411393211000496500000000000000000000000354161148128373002174098373500081516600639495261048431175001000000000212112871357142133379983103292413331127741144617000000000002701003926100100000014191471091900282658342001036490100000009134020461294214014423059239023713557000257600610020000004002003001200000001004000041710292335393941330271817000000000450620075398581198074001110319500010031000009321314865000001
.......................................................................................................................CGGACGGTATATGGGTTAATATT......................................................................................................................................23124229.0024229001000200101000000002628320000000000445285412463186531611610937134127687818485000250000000000000000000000057182784700001008017100000120293043410120000000000000000000000008292282123642150384160102813082341900000000000000000001000000000000034779718838122142083500010013817441126502002541613041477201136153216000000004505600100000100000920000000500581200020395324361211336921150043010000799305102201020290835536101600440180436081611341047757312916132190330177901107
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAA.................................................................................24112976.001297600002198110700000000214170000000000720104399026136626057812420001412000000000000000000000002101925351221100033131555220005240029212212736217300100010000010011061101301835034570361622941125334116000000000000400000602000000000021075849150004028100100235600000000007420760587813390879203895123270000200001060000010011000000000000000000000146360581181224252210700100000010911009266223496011007381080000000000000120471127000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAT..................................................................................2316609.006609000000233103000000000701380000000000036819155441125109675000000000000000000000000010027365730230000200150112002102010261221141114000000000000000001820165130320294566151142121467000000000000000000100000200000078523391000353160110005400000000053112407385363441616661615806100001001104000001004010010000000020051100611244011173319812980020100004810000111471711000006250012004000010211012000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGA...................................................................................2115597.005597000000100000000000003302300000000001879571314217191081254000110000000000000000000000027204726000000020610103100008002430012001000000000000030142419152601101913101764204612100000000000000000030000000000000132300010010000001000000000141001398249309295575446484708000000001309000001002040001000000000019100034248392143124120213005000000222000140108154202000014044700002007000000222287000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGT...................................................................................2214637.004637000001110100000000003631030000000000181513810310427912514381621158000000000000000000000000000124621132800000105014900110400104211200230010000010101000020144240532341512248211412481619400000000000020200000000000000000384152055000149052501000660000000001352725124279113163107270119339000000002301500000200704000000000002001410004112846105613105127200200000021130032766172856450017164720020012100010561676000010
...........................................................................................................................................................................TATTGCACATTCACCGGCCT.....................................................................................2014505.00450500000115100300000000021438200000000001786101416821430228426118247200032000000000000000000000001415191936001040014051400330200015026700250010000000000200544400000031422191291116412021015000000000000000000021000000000000158291006000760141000000340020000001049329557138017161207663341000000011020002012004012001000000009114160006916333946521246134005000000302200313184671320036191000004000000372138000100
.......................................................................................................................CGGACGGTATATGGGTTAATAT.......................................................................................................................................2213189.0031890000000200010000000035370000000001732415382123114101311718800050100000000000000000000001007216001000091220000000010600701015000000000000000000020000202136242180312412321121000000000000000000000000000000000811782831011256810000233200200000014241017102111210000000000060000000040100000000000000303000321120043280432530021000000195931087521801031010001341963670212700148610020517305234100000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAA................................................................................2512617.0026170000023500010000000001000000000000021135207910610131200002500000000000000000000000197602340000000406200000000111015120010000000000000000000880390091100401313010010000000000000000000000000000000011165600010005000001927000000000110014194156801725441644240000100000030000000040000000000000000000002687112822803900000000017300026194110000005133700000000000000713210000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGC...................................................................................2212156.00215600000000000000000000440210000000001520818162291507496522711611232100000000000000000000000000001349600000005000000020000041000207002000000001300001915208300071147641005110813220000000000001000000000000000000032220001010000005100000000021012628163120193873000000000108020000003050010000000000051000129474711167222070010000001300000159176911000000021000000000000002301000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAA..................................................................................2211910.00191000000003100000000000021220000000000000001000103001102000020000000000000000000000001110375000000020210000000000100610020000000000000000003623000310021100021340000000000001100000000000100000003150000003000000120000000001101135448380215921311271001100000000000000010100000000000000700001917716932820136187001000000120000051915000000789001300500000000212000000
...........................................................................................................................................................................TATTGCACATTCACCGGCC......................................................................................1911209.00120900000000000000000000030510000000000200220100120011010000022000000000000000000000001002100101000004000000000000011003000000000000004332450000000601101100010010100000000000000000000000020000000111140000401110000001001000000043287081323228280000000000010000020000300000000000010400000301092100000000000000002300000200000000000000000001000000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAT..................................................................................2211147.001147000000000000000000000209000000000002001200010100102000000000000000000000000000000719240000000001000100100000000100000000000000000000000110010101031100100000000000000000000000000000000000011100040100000021000000000440011047777912561711280000000000010000000010000000000000000100006561062159515800020000004100002524000000006000000100000001100000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAATC................................................................................2511126.0011260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000104877000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAC..................................................................................231788.00788000000000000000000000008000000000010101101110000931000000000000000000000000000000103554000000020100000010000000030050000000000000000003566102400211220010000000000000000000001000000000000020100001000000000100000000003005448455578817210100000000000400000100000000000000000000000023031113353170000000009010001121000000023000000000000000210000000
.......................................................................................................................CGGACGGTATATGGGTTAATATTA.....................................................................................................................................241725.00725000000000000000000004300000000000010233533150709221830000000000000000000000000000000160000000001000000000000000000000000000000000000000000000716111801250106470000000000000000000000000000000010514000004300000614000100000511010100020000000001000000000000000000000000000000000120001049836000000000410000224840000000035409800010020000000692811000000
.......................................................................................................................CGGACGGTATATGGGTTAATA........................................................................................................................................211662.0066200000001000000000000063200000000003202020001212031254000101000000000000000000000000001000000030000000000000501000070000000000000000000000000049114057036140000000000000000000000000000000035195300321130000020602200000121026002020000000000000000000000000000000000000000160000517001142124900000000019000002670001113004122410003006200001112630000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAAA.................................................................................231662.006620000000010000000000000040000000000110001001000010110000000000000000000000000000001570340000010103200000100000002100000000000000000001024114001100005001000000000000000000000000000000000000221000000000000021000000000210047212526586848830000000001000000000000000000000000000100003592256512270000000004000001520000000355000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGC.......................................................................................181639.0063900000000000000000000310010000000000000032001641402149643000530000000000000000000000000000000000000000000000000000000000000000000001020110190000030523341003202030210000000000000000000000000000000011104000004000000420000000001213001100110000000001000000010010000000000000100200008133710287170010000005000003335210100123000000100001010421000000
.............................................................................................................................................................................TTGCACATTCACCGGCCTGA...................................................................................201624.0062400000001010000000000030500000000000001100000010000010000000000000000000000000000051581600000003011000000000000130300800000000000000000000301000000010000000000000000000000000000000000000000101000000030000010000000000200046334347454253810000000000000000000000000010000000000000008763134122160000000000000001200000000302000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAG..................................................................................231606.00606000000100000000000001108000000000001110211001002225110000000000000000000000000000100010000000201000000000102002000300000000000000001002023005903111112010000000000000000000000000000000000184161000905200000120000000000100172025191921282900000000000100000000000000000000000000100015272111044134300000000020000016891030110021825000100100000024732000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGG...................................................................................221553.00553000000410000000000000003000000000000611420910031363125000000000000000000000000000051209000000000100000000002201211070000000000000000023062240003321000101020000000000000000000000000000000000000000000000000300000000000200911311638240000000000060000000030000100000000100000001139822107986900200000060000041319100000027000000000000001201000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAAA...............................................................................261528.00528000001000000000000000200000000000000120001000000000000000000000000000000000000000100020000000000000000000000001000000000000000000100004110102202002010000100000000000000000000000000000000710100010120000054000000000000022163917311512280000000000000000000000000000000000000000000820031426050000000001000001102000000118000000000000002213000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAT.................................................................................241429.004290000000100000000000000020000000000000001000100000101000000000000000000000000000003128100000001003000000000001013011200000000000002000000010003100000000100000000000000000000020000000000001522300000230140000002100000000010001718155222417340000450001000000001001010000000000000000000140219440000000009000000101100000001000000000000041113000000
.......................................................................................................................CGGACGGTATATGGGTTAATATTAA------------........................................................................................................................251426.00426000000000000000000000000000000000010111000010202100000000000000000000000000000000738190000000002000000000000000100000000000000000000000000000518202031019400000000000000000000000000000000013012200112000000210000000000100000100000000000000000000000000000000000000000000000212004190600000000068100027280000000014337600000010000000161410000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTG....................................................................................201363.0036300000000000000000000001600000000007000000020000100400000000000000000000000000000000000000000030010000000000200000010000000000000010230000000026010210000400000000000000000000000000000000000100000010000000000000000010021130111818287330000000010000000000000100000000000000100002315211352220020000000000002903000000511000000400000000201000000
.......................................................................................................................CGGACGGTATATGGGTTAAT.........................................................................................................................................201273.002730000000000000000000000090000000000140020002000010110120000000000000000000000000000000020000000400000001000001000000000000000000000000000000000009030010009000000000000000000000000000000000541421001104000000000001000001427000010000000000000000000000010000000000000100110000170031318002000000100100051300115600191112000200900000001441000000
........................................................................................................................GGACGGTATATGGGTTAATATT......................................................................................................................................221264.00264000000000000000000000200000000000000200023030421610430000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000020260402100000000000000000000000000000000010100000000000001000000000230320002000000000000000000000000000000000000000010000315004232130000000007000008330101010061646000200800000002321000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGATT.................................................................................241182.001820000000000000000000001010000000000000101000000000000000000000000000000000000000000162100000000101000000000000000001000000000000000000000000011101000200000000000000000000000000000000000001100300003030000000100000000001001519141010151416000000000001000000000000000000000010010000030012010000000003100000000000000000000000000000000100000000
......................................................................................................................TCGGACGGTATATGGGTTAATAT.......................................................................................................................................231173.001730000000000000000000000000000000000001201000001100000000000000000000000000000000001080300000000000000000000000000000000000000000000000000000001901000000131000000000000000000000000000000000102000001000000010000000000000224041000000000000010000000000000000000000000000003150011511200200000019100004110000000001213000400110000002111000000
..........................................................................................................................................................................ATATTGCACATTCACCGGCCTGA...................................................................................231169.001690000001000000000000000010000000000002120000001000000000000000000000000000000000001153700000000000000000000000002000000000000000000000010200000000000000000000000000000000000000000000000000001000000000000000000000000001159121514101022000000000000000000001000000000000000000000010013050000000003000001300000000901000000000000000101000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAAAA................................................................................241140.001400000010000000000000000000000000000000000000000001000000000000000000000000000000000000100000000000000000000000000000000000000000000000301000001000010000000000000000000000000000000000000000000000000000000000000000000000671121321151400000000000000000000000000000000000000000011315110040000000000000000402000000100000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGTT..................................................................................231131.001310000000000000000000000070000000000000000001000000000000000000000000000000000000000140000000000010000002000000000001000000000000000000000000011000100000000000000000000000000000000000000003001400001004000000000000000000000022111626000000000000000001000000000000000000010000021003050000000000000000000001000000000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAG.................................................................................241129.001290000000000010000000000000000000000000000000002001100000000000000000000000000000002002100000000000000000000201000001000000000000000000000000104000110100003000000000000000000000000000000008110000000000000010000000000000572247510000000000000000000000000000000000000000000253459260000000004000000103100000010000000000000010310000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAC.................................................................................241128.001280000000000000000000000000000000000001200020000002020000000000000000000000000000002800300000002000000000000100000000000000000000000000000050000000010000000000000000000000000000000000000000100000000000000110000000000000594968317000060000000000000000000000000000000000000161312110000000003000001220000000000000000000000000102000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAC..................................................................................221127.0012700000000000000000000000200000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010100000000000000000000000000000000000000000000000000200000000000000001008561215108100000000000000000000000000000000000000100002817213050000000000000000001000000201000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAT................................................................................251119.0011900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000010000100000000000000000000000000000000130000000000000000000000000000000000000000000035010000011050000002000000000000001403210312000000000000000000000000000000000000000000120022010000000003010000000000000000000000000000010000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTT....................................................................................211118.0011800000000000000000000010240000000000000010041110001000000000000000000000000000000003100100100002002000000000000000002000000000000000000000000000000000110000000000000000001000000000000000005040000101000000000000000000200017332128000000001004000000002000000000000000000000010001020000000002000011010000000000000000100000000210000000
.......................................................................................................................CGGACGGTATATGGGTTAATATAA.....................................................................................................................................241115.001150000000000000000000000000000000000000100010000010000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000004062000100000000000000000000000000000000000001022000003000000230000000001000000000000000000000000000000000000000000000000000001500010000000000001000001250000000012621000000000000002233000000
...............................................................................................................................................................................GCACATTCACCGGCCTGA...................................................................................181108.00108000000000000000000000100000000000000000200000000010100000000000000000000000000000200110000000000100000000000000100000000000000000000000002003040012000100100000000000000000000000000000000120000000000000001000000000510001711000000000000000000000000000000000000000001000119012210490010000000000000001000000102000000000000000000000000
.......................................................................................................................CGGACGGTATATGGGTTAA..........................................................................................................................................191103.00103000000000000000000000001000000000000000000100100000100000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000002000000000000000000010000000000000000010110100209000000000013000002213000100020000000000000000000000000000000000000000000200240400100000020100203001011001711000100100000000020000000
..............................................................................................................................................................................TGCACATTCACCGGCCTGA...................................................................................19196.00960000000000000000000000020000000000000000001000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000100000000000000232213140000000000000000000000000000000000000000004391519070000000001000000300000000001000000000000000000000000
.......................................................................................................................CGGACGGTATATGGGTTAATAA.......................................................................................................................................22191.009100000000000000000000000200000000001000000000000000110000000000000000000000000000010000000000010100000000300000000000000000000000000000000000013001000000220000000000000000000000000000000010105000101400000000000000000001000000000000000000000000000000000000000000000000000020001140000000005000002100101300434000000000000000331000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTA....................................................................................21189.00890000000400020000000000014000000000000000100000001000000000000000000000000000000000101020000000100000000000002000100900000000000000000000000000203100000000000000000000000000000000000000000300000000000000000000000000000033414432000000000000000000000000000000000000010000430003020000000000000000010000000020000000000000000000000100
.......................................................................................................................CGGACGGTATATGGGTTAATATAAA------------........................................................................................................................25184.008400000000000000000000000000000000000000021000010010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000010000000003000000000000000000000000000000000000000000000000000400000000000000000110100000000000000000000000000000000000000000010000401000000000200004020000100061019000000000000003527000000
.......................................................................................................................CGGACGGTATATGGGTTA...........................................................................................................................................18176.007600000000000000000000000000000000000020000010100000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000020100000108000000000011001002121000000000000000000000000000010000000000000100000001000033200000000000000023001001001901000000000000010000000000
.......................................................................................................................CGGACGGTATATGGGTTAATATTT.....................................................................................................................................24175.00750000000000000000000000000000000000000000011000011020000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103100200000000000000000000000000000000001001000000000000010000000001100200010120000000000000000000000000000000000000000000300190500000000030000003000000001217000100100000000011000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTTT...................................................................................22171.0071000000000001000000000006000000000001100112000000000000000000000000000000000000000201020000000002000000000000000000000000000000000000000000001200100000000000000000000000000000000000000000002000000000000000000000000000027473527000000002001000000000000000000000000000000010100010000000000000000001010000000000000000000000000000000
..........................................................................................................................................................................ATATTGCACATTCACCGGCCTG....................................................................................22170.0070000000000000000000000000000000000001000000000000002000000000000000000000000000000400130000000001000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000001000000000000017558523000000000000000000000000000000000000000000010001020000000002000011101000000012000000000000001410000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGT...................................................................................21170.00700000000000000000000000000000000000000000030000000001000000000000000000000000000000000000000001000000000000000000000000000000000000000000030000000031000000000000000000000000000000000000004010000100000000000000000000000151401230000000000000000000000000000000000000000001304040500000000000000000010000001610000000000000000000000000
.......................................................................................................................CGGACGGTATATGGGTTAATAAA......................................................................................................................................23167.00670000000000000000000000000000000000010000000000000000000000000000000000000000000000200000000000010000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000070000008000000010000000000000000000000000000000000000000000000000000000000000000200030100000000050000213000011004411000000000000000201000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAG..................................................................................22161.00610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100110041230000000000000000000000000000000000000000000413311390000000000010000002000000025000000000000001102000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTC....................................................................................21156.0056000000000000000000000002000000000000000002000000111110000000000000000000000000000010000000000000000000000000000000000000000000000000000000001011010010001000000000000000000000000000000000000100000000000100000000000001031121212000000000001000000001000000000000000000000001104120000000000000004052010000000000000000000000100000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGATC.................................................................................24149.00490000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000132104420000212000000000000000000000000000000000000000112030000000000000000000000000000000000000000000000000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAAT.................................................................................23148.0048000000000000000000000003000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010100010000000000000000000000044213023000001000000000000000000000000000000000000032402040000000000000001101000000001000000000000010000000000
.............................................................................................................................................................................TTGCACATTCACCGGCCTGAA..................................................................................21144.0044000000000000000000000002000000000000000000000000000000000000000000000000000000000000010000000100100000000001010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032639252000000000000000000000000000000000000000000020000110000000000000000000000000000000000000000000000000000
......................................................................................................................TCGGACGGTATATGGGTTAAT.........................................................................................................................................21138.0038000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000300000000000000000000100000000000000000000000000000000000000000000020000070004020000000004110001300000000052000000100000000000000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAAAAA...............................................................................25137.0037000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000002000000000000000000000000000000010000000000000000000000000000000000000000000000000020421534000000000000000000000000000000000000000000110205000000000000000000000000000120000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTTC...................................................................................22137.0037000000000000000000000000000000000001210001200000041030000000000000000000000000000000100000000000000000000000000000000000000000000000000002000000000000000100000000000000000000000000000000000000000000000000000000000000001000000000010000002000000000000000000000000010000020100020000000000000003410000000000000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAGT.................................................................................24135.0035000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000614000010100000000000000000000001013102000000000000000000000000000000000000000000010110210000000000000000011001000001000000100000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGACT.................................................................................24135.0035000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000023220033000000000000000000000000000000000000000000010404020000000002000000000100000000000000000000000000000000
.......................................................................................................................CGGACGGTATATGGGTTAATATC......................................................................................................................................23133.0033000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000000000000000010014020000000002000002800000000214000000100000000001000000
........................................................................................................................GGACGGTATATGGGTTAATAT.......................................................................................................................................21132.0032000000000000000000000000000000000001100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000120011110010000002000001100000000338000000000000000001000000
.............................................................................................................................................................................TTGCACATTCACCGGCCTG....................................................................................19132.0032000000000000000000000000000000000000000000000000000100000000000000000000000000000000210000000101100000000000001100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000002211505000000000000000000000000000000000000000000020001020000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGTTT.................................................................................24129.00290000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211000020100000000000000000000007010111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAC................................................................................25129.0029000000000000000000000000000000000000100000200000000000000000000000000000000000000000010000000000000000000000000000000000000000000000100100000100000000000000000000000000000000000000000000000000000000000000000000000000032104312000000000000000000000000000000000000000000110001000000000000000001011000000000000000000000000000000000
............................................................................................................................................................................ATTGCACATTCACCGGCC......................................................................................18128.00280000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181300000000000000000000000000000000000000000000000000000000000000000000000000000000000000211000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGC...................................................................................21128.0028000000000000000000000000000000000000000000100010100000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000010001000001100000000000000100000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000060105000000000000000004000000000000000000000000000000000000
droSim2
TTACTTTAAAAAGAATCATCATTGAGCAAAGTAATTAGTTTTTT---------------TCCTTGCAATAGGCGGCAAGACAGTGAAAAATCGAAATT-TCTAGATC------ATTTTTCGGACGGTATATGAGTCAATATTTTT-----------TTTTT--TTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAGCATCGAA------------------------------------------------------AAAGAASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGA...................................................................................2211148603.0011486031181798276671188328123080292899983475341617981518543815121664001
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAA..................................................................................231134585.00134585423122722356213461030756453312039349321131189000
.......................................................................................................................CGGACGGTATATGAGTCAATATT......................................................................................................................................23139166.003916604731891223897048391951955553499815561174000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAA.................................................................................24119190.001919016415284555331410112381056090506917366000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTG....................................................................................21111653.0011653177643068129100185990514869031256443002351010
.......................................................................................................................CGGACGGTATATGAGTCAATAT.......................................................................................................................................2219917.009917014951057011102394622391875350231712590000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGA...................................................................................2119758.00975811214878171272022582808154659731522000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGG...................................................................................2217660.00766025451681900057591636331901000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAA................................................................................2514575.0045750377112405003832035141097269000
.......................................................................................................................CGGACGGTATATGAGTCAATATTAAA-----------........................................................................................................................2614150.00415000910006255681924943452195000
.......................................................................................................................CGGACGGTATATGAGTCAATATTAA....................................................................................................................................2513366.00336600500035739915629377161613000
.......................................................................................................................CGGACGGTATATGAGTCAATA........................................................................................................................................2112729.0027290160209257481191121203531999000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAA..................................................................................2212573.002573077010706005028954696610000
...........................................................................................................................................................................TATTGCACATTCACCGGCC......................................................................................1912293.00229371511702029881519362821008000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAAA...............................................................................2611729.00172900435002232368193963094000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAT..................................................................................2311389.0013894872859001781224002216151250000
...........................................................................................................................................................................TATTGCACATTCACCGGCCT.....................................................................................2011297.00129701624418461551532851392518142550415
..........................................................................................................................................................................ATATTGCACATTCACCGGCCTGA...................................................................................2311258.00125800540039136931914811128000
.......................................................................................................................CGGACGGTATATGAGTCAATATTA.....................................................................................................................................2411040.001040001000013713931417922711716000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGT...................................................................................2211006.00100611417530051599172104216445000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGC...................................................................................221898.0089811526000312850526322700000
.......................................................................................................................CGGACGGTATATGAGTCAAT.........................................................................................................................................201796.0079602101512146201987017567000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAAA.................................................................................231427.0042702403220391815712111041000
.........................................................................................................................................................................TATATTGCACATTCACCGGCCTGA...................................................................................241376.0037601500011512582460200000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAC..................................................................................231367.00367031131200243189491432000
.......................................................................................................................CGGACGGTATATGAGT.............................................................................................................................................161349.0034900000054513322000000
.............................................................................................................................................................................TTGCACATTCACCGGCCTGA...................................................................................201321.003210035006511691373100000
...........................................................................................................................................................................TATTGCACATTCACCGGC.......................................................................................181317.00317169607912814432424100000
...............................................................................................................................................................................GCACATTCACCGGCCTGA...................................................................................181290.0029001342001625907940300000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAC.................................................................................241283.0028304142100141775290100000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAT.................................................................................241280.0028003131005963903601005000
.......................................................................................................................CGGACGGTATATGAGTCAATAA.......................................................................................................................................221212.0021200000033149402177000
..........................................................................................................................................................................ATATTGCACATTCACCGGCCTGAA..................................................................................241207.00207022000352797350036000
.......................................................................................................................CGGACGGTATATGAGTC............................................................................................................................................171205.002050000003514192000000
.......................................................................................................................CGGACGGTATATGAGTCA...........................................................................................................................................181202.0020201007127311898001000
......................................................................................................................TCGGACGGTATATGAGTCAATAT.......................................................................................................................................231189.001890010503239375515014000
.......................................................................................................................CGGACGGTATATGAGTCAA..........................................................................................................................................191188.00188012010166344110050000
.......................................................................................................................CGGACGGTATATGAGTCAATT........................................................................................................................................211167.001670000000000102164000
.................................................................................................................................................................................ACATTCACCGGCCTGA...................................................................................161152.001520000001117552049000000
........................................................................................................................GGACGGTATATGAGTCAATATT......................................................................................................................................221151.0015100010003729361028001000
.......................................................................................................................CGGACGGTATATGAGTCAATATAAA....................................................................................................................................251150.00150000100181082336000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAG..................................................................................231149.001490434400222133213502000
.......................................................................................................................CGGACGGTATATGAGTCAATATAA.....................................................................................................................................241129.001290113001612482612109000
..................................................................................................................................................................................CATTCACCGGCCTGA...................................................................................151119.00119000000213730238000000
..............................................................................................................................................................................TGCACATTCACCGGCCTGA...................................................................................191118.00118003100153239187300000
............................................................................................................................................................................ATTGCACATTCACCGGCCTG....................................................................................201113.00113111305205748411124000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAAAA................................................................................241108.0010800590022544211100000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAT..................................................................................221106.001060313200131238220102000
.......................................................................................................................CGGACGGTATATGAGTCAATATTT.....................................................................................................................................241104.001040100100178211651124000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAG.................................................................................24190.0090012310011728140320000
.......................................................................................................................CGGACGGTATATGAGTCAATATA......................................................................................................................................23188.008800250012895801326000
.............................................................................................................................GTATATGAGTCAATATT......................................................................................................................................17186.0086000000000086000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTT....................................................................................21185.00850344000000001037000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGATT.................................................................................24184.008405700019191971115000
...........................................................................................................................................................................TATTGCACATTCACCGG........................................................................................17175.0075000000242311106001000
.........................................................................................................................................................................TATATTGCACATTCACCGGCCTGAA..................................................................................25171.0071000000231721100000000
................................................................................................................................................................................CACATTCACCGGCCTGA...................................................................................17171.007100000013834142000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAC................................................................................25169.0069001400010722160000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGTT..................................................................................23162.00620310000222200023000
.............................................................................................................................................................................TTGCACATTCACCGGCCTGAA..................................................................................21159.005900020012181980000000
...............................................................................................................................ATATGAGTCAATATT......................................................................................................................................15157.0057000000100056000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAAAAA...............................................................................25151.0051000400872390000000
.......................................................................................................................CGGACGGTATATGAGTCAATATTTAA-----------........................................................................................................................26148.00480000009622101000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAT................................................................................25148.00480033005518120101000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGG...................................................................................21146.0046033300031211200000
.......................................................................................................................CGGACGGTATATGAGTCAATATTTAA-----------A.......................................................................................................................27145.004500000010816110000000
...........................................................................................................................................................................TATTGCACATTCACCGGCTGA....................................................................................21535.40177001000545046250010000
............................................................................................................................................................................ATTGCACATTCACCGGCC......................................................................................18134.00340211016110003000000
.......................................................................................................................CGGACGGTATATGAGTCAATAAA......................................................................................................................................23132.0032000000211271009000
...........................................................................................................................................................................TATTGCACATTCACCGGCCGA....................................................................................21131.0031000000551470000000
..........................................................................................................................................................................ATATTGCACATTCACCGGCCTGAAA.................................................................................25130.0030001000531180002000
.......................................................................................................................CGGACGGTATATGAG..............................................................................................................................................15130.0030000000154317000000
........................................................................................................................GGACGGTATATGAGTCAATAT.......................................................................................................................................21130.003000000023785014000
............................................................................................................................................................................ATTGCACATTCACCGGCCT.....................................................................................19129.0029000015000527000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTA....................................................................................21129.002900010077240026000
..............................................................................................................................TATATGAGTCAATATT......................................................................................................................................16126.0026000000201023000000
..........................................................................................................................................................................ATATTGCACATTCACCGGCCTG....................................................................................22125.0025002000037200110000
...........................................................................................................................................................................TATTGCACATTCACCG.........................................................................................16123.0023000000300317000000
............................................................................................................................GGTATATGAGTCAATATT......................................................................................................................................18122.0022000000100021000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAAT.................................................................................23121.002100000077421000000
.......................................................................................................................CGGACGGTATATGAGTCAAA.........................................................................................................................................20121.0021000000101110116000
..................................................................................................................................................................................CATTCACCGGCCTGAA..................................................................................16120.0020000000421220000000
...............................................................................................................................................................................GCACATTCACCGGCCTGAA..................................................................................19119.001900100003843000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAG................................................................................25118.001800100034721000000
........................................................................................................................GGACGGTATATGAGTCAATATTAA....................................................................................................................................24118.001800010030941000000
...............................................................................................................................................................................GCACATTCACCGGCCTGAAA.................................................................................20118.001800100000881000000
.......................................................................................................................CGGACGGTATATGAGTCAATATC......................................................................................................................................23117.001700100051117010000
........................................................................................................................GGACGGTATATGAGTCAATATTAAA-----------........................................................................................................................25117.001700020041550000000
.......................................................................................................................CGGACGGTATATGAGTCAATATTC.....................................................................................................................................24117.001700100012634000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGT...................................................................................21117.0017031000100100011000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTTG...................................................................................22116.0016001500000000100000
...................................................................................................................................................................................ATTCACCGGCCTGAA..................................................................................15115.001500000022614000000
.........................................................................................................................................................................TATATTGCACATTCACCGGCCTG....................................................................................23115.001500700015200000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTTT...................................................................................22114.001401110010010009000
......................................................................................................................TCGGACGGTATATGAGTCAATA........................................................................................................................................22114.001400002024130002000
.............................................................................................................................GTATATGAGTCAATAT.......................................................................................................................................16114.0014000000003011000000
..............................................................................................................................................................................TGCACATTCACCGGCCTGAA..................................................................................20113.001300000021820000000
.................................................................................................................................................................................ACATTCACCGGCCTGAA..................................................................................17113.001300000031810000000
droSec2
TTAGCATCGAAAAAGAAAAATA------------AAA--------GT--GCTT-----------G----------------------------CAAAA-ACATAAAC------ATTTGCAGGACGGGTCGTGTGTCAGTGTATTT-----------AC-TT--CTTAACTATATTGCACACTTCCCGGCCTTTAAA--------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTT...................................................................................22112571.0012571121561034956
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTT....................................................................................2112018.0020181803518624
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTT...................................................................................211731.00731731000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTA..................................................................................231446.004464212203
...........................................................................................................................................................................TATTGCACACTTCCCGGCCT.....................................................................................201194.001941197653
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTAA.................................................................................241154.001541260262
............................................................................................................................................................................ATTGCACACTTCCCGGCCTT....................................................................................20182.008281010
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTT..................................................................................23180.008074240
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTAAA--------------------------------------------------------------------------------25177.007770070
.......................................................................................................................AGGACGGGTCGTGTGTCAGTGTA......................................................................................................................................23171.007160524
.............................................................................................................................................................................TTGCACACTTCCCGGCCTTT...................................................................................20148.004846020
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTA...................................................................................22143.004331075
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTTA..................................................................................22124.002424000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTG..................................................................................23121.002121000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTG....................................................................................21115.001514010
.......................................................................................................................AGGACGGGTCGTGTGTCAGTGT.......................................................................................................................................22115.001512111
..........................................................................................................................................................................ATATTGCACACTTCCCGGCCTTT...................................................................................23113.001313000
...........................................................................................................................................................................TATTGCACACTTCCCGGCC......................................................................................1918.0086020
............................................................................................................................................................................ATTGCACACTTCCCGGCCT.....................................................................................1918.0088000
.......................................................................................................................AGGACGGGTCGTGTGTCAGTG........................................................................................................................................2117.0076001
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTC...................................................................................2217.0076001
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTC..................................................................................2317.0077000
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTTT..................................................................................2216.0066000
...............................................................................................................................................................................GCACACTTCCCGGCCTTT...................................................................................1816.0066000
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTTAA.................................................................................2315.0054010
..............................................................................................................................................................................TGCACACTTCCCGGCCTTT...................................................................................1915.0055000
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTTAAA--------------------------------------------------------------------------------2414.0044000
........................................................................................................................GGACGGGTCGTGTGTCAGTGTA......................................................................................................................................2214.0044000
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTA...................................................................................2114.0044000
........................................................................................................................GGACGGGTCGTGTGTCAGTGT.......................................................................................................................................2113.0033000
.............................................................................................................................................................................TTGCACACTTCCCGGCCTT....................................................................................1913.0032010
.......................................................................................................................AGGACGGGTCGTGTGTCAGT.........................................................................................................................................2013.0033000
..........................................................................................................................................................................ATATTGCACACTTCCCGGCCTT....................................................................................2213.0033000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTA....................................................................................2113.0030030
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTG...................................................................................2113.0033000
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTC...................................................................................2113.0033000
...........................................................................................................................................................................TATTGCACACTTCCCGGC.......................................................................................1812.0022000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTAG.................................................................................2412.0021010
..............................................................................................................................................................................TGCACACTTCCCGGCCTT....................................................................................1811.0011000
.......................................................................................................................AGGACGGGTCGTGTGTCAGTGTAAAA-----------........................................................................................................................2611.0010010
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTCTG--------------------------------------------------------------------------------2511.0011000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTGGC--------------------------------------------------------------------------------2511.0011000
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTTC..................................................................................2211.0011000
.............................................................................................................................................................................TTGCACACTTCCCGGCCTTTA..................................................................................2111.0010010
.......................................................................................................................AGGACGGGTCGTGTGTCAGTGTT......................................................................................................................................2311.0010010
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTAT.................................................................................2411.0011000
.............................................................................................................................................................................TTGCACACTTCCCGGCCTTTAAA--------------------------------------------------------------------------------2311.0011000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTAC.................................................................................2411.0011000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCC.....................................................................................2011.0010010
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTAT..................................................................................2311.0011000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCA.....................................................................................2011.0010010
..........................................................................................................................ACGGGTCGTGTGTCAGTGTAT.....................................................................................................................................2111.0011000
droYak3
CGAA-------------------------------AA--------GT--GCTT-----------G----------------------------CAAAT-ACACAAAC------ATTTGCAGGACGGGTCGTGTGGCAGTGTATTG-----------AT-TT--CTTAGCTATATTGCACACTTCCCGCCCTTTAAA--------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTT...................................................................................22130388.0030388019757101714463920000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTT...................................................................................2112170.0021700201915100000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTT....................................................................................2111594.0015940907611740020000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTC...................................................................................2211155.00115506114900000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTA..................................................................................231522.005220387125100000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTAA.................................................................................241337.0033702626870000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTT..................................................................................231256.0025611807050000000
.............................................................................................................................................................................TTGCACACTTCCCGCCCTTT...................................................................................201174.0017401344000000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTAAA--------------------------------------------------------------------------------251155.0015501441010000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTC....................................................................................211107.001070010700000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTT....................................................................................201106.001060931300000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCT.....................................................................................20199.00990524520000000
.......................................................................................................................AGGACGGGTCGTGTGGCAGTGTA......................................................................................................................................23186.0086084200000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTG...................................................................................22152.0052052000000000
..........................................................................................................................................................................ATATTGCACACTTCCCGCCCTTT...................................................................................23149.0049047200000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTA...................................................................................22145.00450311310000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTG..................................................................................23141.0041038300000000
..............................................................................................................................................................................TGCACACTTCCCGCCCTTT...................................................................................19140.00400291100000000
...............................................................................................................................................................................GCACACTTCCCGCCCTTT...................................................................................18137.0037030700000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTTA..................................................................................22134.0034033100000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTTAA.................................................................................23131.0031028300000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTAT.................................................................................24126.0026024110000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTTT..................................................................................22125.0025022300000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTC..................................................................................23124.00240141000000000
.......................................................................................................................AGGACGGGTCGTGTGGCAGTGT.......................................................................................................................................22120.0020014500010000
...........................................................................................................................................................................TATTGCACACTTCCCGCCC......................................................................................19119.0019010810000000
.......................................................................................................................AGGACGGGTCGTGTGGCAGTG........................................................................................................................................21115.001509310020000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCC.....................................................................................20112.0012101100000000
........................................................................................................................GGACGGGTCGTGTGGCAGTGTA......................................................................................................................................22112.0012012000000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTTAAA--------------------------------------------------------------------------------24112.0012012000000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTTT.................................................................................24110.001009100000000
.............................................................................................................................................................................TTGCACACTTCCCGCCCTT....................................................................................19110.001009100000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTGG.................................................................................2419.00909000000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTAC.................................................................................2419.00907200000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTC...................................................................................2119.00901800000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTTAT.................................................................................2316.00606000000000
...........................................................................................................................................................................TATTGCACACTTCCCGCC.......................................................................................1816.00604200000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTTG..................................................................................2215.00505000000000
.......................................................................................................................AGGACGGGTCGTGTGGCAGTGTAAA....................................................................................................................................2515.00502000000003
.......................................................................................................................AGGACGGGTCGTGTGGCAGTGC.......................................................................................................................................2215.00500500000000
.............................................................................................................................................................................TTGCACACTTCCCGCCCTTC...................................................................................2015.00500500000000
.............................................................................................................................................................................TTGCACACTTCCCGCCCTTTAA.................................................................................2214.00404000000000
.............................................................................................................................................................................TTGCACACTTCCCGCCCTTTA..................................................................................2114.00403100000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTAG.................................................................................2414.00404000000000
........................................................................................................................GGACGGGTCGTGTGGCAGTGT.......................................................................................................................................2114.00404000000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTGT.................................................................................2414.00404000000000
.............................................................................................................................................................................TTGCACACTTCCCGCCCTTTT..................................................................................2113.00302100000000
..............................................................................................................................................................................TGCACACTTCCCGCCCTT....................................................................................1813.00302100000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTTG.................................................................................2413.00303000000000
..........................................................................................................................................................................ATATTGCACACTTCCCGCCCTT....................................................................................2213.00303000000000
.......................................................................................................................AGGACGGGTCGTGTGGCAGTGTAA.....................................................................................................................................2413.00303000000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTCT.................................................................................2413.00303000000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCT.....................................................................................1912.00201100000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTTC..................................................................................2212.00202000000000
.............................................................................................................................................................................TTGCACACTTCCCGCCCT.....................................................................................1812.00202000000000
...............................................................................................................................................................................GCACACTTCCCGCCCTTTT..................................................................................1912.00201100000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTG....................................................................................2112.00201100000000
..........................................................................................................................................................................ATATTGCACACTTCCCGCCCTTTAAA--------------------------------------------------------------------------------2612.00202000000000
..........................................................................................................................................................................ATATTGCACACTTCCCGCCCTTTA..................................................................................2412.00202000000000
.............................................................................................................................................................................TTGCACACTTCCCGCCCTTTAAA--------------------------------------------------------------------------------2312.00202000000000
..............................................................................................................................................................................TGCACACTTCCCGCCCTTTA..................................................................................2012.00202000000000
.......................................................................................................................AGGACGGGTCGTGTGGCAGT.........................................................................................................................................2012.00220000000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTTC.................................................................................2412.00202000000000
.......................................................................................................................AGGACGGGTCGTGTGGCAGTGTAT.....................................................................................................................................2412.00202000000000

Generated: 10/20/2015 at 07:35 PM

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6496:9090413-9090584 - dmo_21 confident TAAGTTTCAAAAGAAAAAACGA------------AAA--------AT--GT----------------------------------------CAAATTT-TCAGCTGC------GTTTGCAGGACGGTATTTGTGACAATATGAATTATTGAAATCAAT-TT--ATTCAGCATATTGCACATCTCCCGGCCTATAAAACAGTTGTGAGCCCGTCGATT---T-----------------------------AAATGATTTGTGTATTTAAAATAAAT
droVir3 scaffold_12875:13668858-13669020 - dvi-mir-311 Known_mirbase CATGAAAAG----TTAAAGCTG--GA--------AAA--------ACTAG--T-----------G----------------------------CGTCC-GCATGACC------ATTTTAAGGACGGTATTTGTGACAATATGTGCAG-TTAAATCAAT-TT--GTTTAGCATATTGCACATCTCCCGGCCTAAAAATGAACCGTGCTCTCTTCGATATATGGAACAT---------------------------------------TAAAACAATT
droGri2 scaffold_15245:17564421-17564594 + dgr_43 confident TAAGCATCT----TGCAATTT----------------------------------ATATGGCTTGCAGTTATCTGCA------------------------TTAACC------ATTTTCAGGATGGAAGCTGTGACAATATGTAGGT-TTTAATTAAT-TTATATTTCATATATTGCACACCTCCCGGCCTATAAATGATTCTTGAGCTCCTCGATT---T---T---------GTTTATATATCTAA----A--------GTGT-TGA----AAA
dp5 3:8679882-8680000 + dps-mir-92c Known_mirbase AGCT-------------------------------------------------------------------------------------------------------GCTTTGATTTGTAGGCCGTGGTTCTTGCAAATACGGA----------------T--TCATAACGTATTGCACTAGCCCCGGTCCAAAAAACAATAGCAA---CGCCGGCAA------CAG---CAAAGTATGTACAATTAT------------------------AGTG
droPer2 scaffold_4:2566613-2566755 + dpe_91 AGCT-------------------------------------------------------------------------------------------------------GCTTTGATTTGTAGGCCGTGGTTCTTGCAAATACGAA----------------T--TCATAACGTATTGCACTAGCCCCGGTCCAAAAAACAATAGCAA---CGCCGGCAA------CAG---CAAAGTATGTACAATTATTCAAAGAATCTTCACATTTTTCATGAAT
droAna3 scaffold_13266:4132883-4133036 + dan-mir-311a Known_mirbase GATATT-------------------------------------------------ATACGAACAGCAGCGATCGCTA--TCTGAGAGAAATATTTGTT-GCCAGATT------ATCTTCAGGACGGTATTTGTGTCAATATGGAT--------------AT--TTCAAACATATTGCACTTATACCGGCCTGATGATCTCCGGCGC--TCGTCATCT---G---T-GACT---------------------------------------AAAAGTG
droBip1 scf7180000396427:2575661-2575756 + A-----------------------------------------------------------------------------------------------------------------------GGTCGGTATTTGTGACAATATGAT---------------AT--TTCAATCATATTGCACTTGTACCGGCCTGATAATATCTGGCAT-----TCGTCATCTGTGAGTCTGT---------------------------------------GAAAAGT
droFic1 scf7180000454039:1776022-1776116 - ------------------------------------------------------------------------------------------------------------------------GGACGGAAGATGCGCCAGTATGCGG-----------A--TT--TTTAAGCATATTGCACATTTACCGGCCTAGTAATGCACTGGCTATTCATCAATT---A---T-TTAT---------------------------------------GCAAATG
droRho1 scf7180000780104:82067-82200 - AAAC-GG------------CGA------------AAA--------GT--GTTC-----------A------------------------AA--CTAAGTCCTAGGTT------GTTTTTCGGACGGTATTTGTGACAATATGCTT-----------A--AT--TTTAGACATATTGCACATTTACCGGCCTGAAATTAACATGGATATTCTTCGATAT------TT-------------------------------------------GTAAAGT
dm3 chr2R:16471355-16471530 - dme-mir-311 Known_mirbase TAAT-------------------------------TAGTTTTGTTGT--GTTTTTAAACTCCTTGCAATAGGCGGCAAGACGGTGAAAAATCGAAATT-TCTAGATC------ATTTTTCGGACGGTATATGGGTTAATATTTC------------AT-TT--GTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAA------GTGAAA---------------------------------------AAAAAGT
droSim2 2r:17040842-17041028 - dsi-mir-311 Known_mirbase TTACTTTAAAAAGAATCATCATTGAGCAAAGTAATTAGTTTTTT---------------TCCTTGCAATAGGCGGCAAGACAGTGAAAAATCGAAATT-TCTAGATC------ATTTTTCGGACGGTATATGAGTCAATATTTTT-----------TTTTT--TTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAGCATCGAA------------------------------------------------------AAAGAA
droSec2 scaffold_1:14025491-14025604 - dse-mir-310 Known_mirbase TTAGCATCGAAAAAGAAAAATA------------AAA--------GT--GCTT-----------G----------------------------CAAAA-ACATAAAC------ATTTGCAGGACGGGTCGTGTGTCAGTGTATTT-----------AC-TT--CTTAACTATATTGCACACTTCCCGGCCTTTAAA--------------------------------------------------------------------------------
droYak3 2R:12724917-12725011 + dya-mir-310 Known_mirbase CGAA-------------------------------AA--------GT--GCTT-----------G----------------------------CAAAT-ACACAAAC------ATTTGCAGGACGGGTCGTGTGGCAGTGTATTG-----------AT-TT--CTTAGCTATATTGCACACTTCCCGCCCTTTAAA--------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TAAGTTTCAAAAGAAAAAACGA------------AAA--------AT--GT----------------------------------------CAAATTT-TCAGCTGC------GTTTGCAGGACGGTATTTGTGACAATATGAATTATTGAAATCAAT-TT--ATTCAGCATATTGCACATCTCCCGGCCTATAAAACAGTTGTGAGCCCGTCGATT---T-----------------------------AAATGATTTGTGTATTTAAAATAAATSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAT...................................................................................22198033.009803342391253110165302857
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTA....................................................................................21217548.5035097120312076211720844108
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATA..................................................................................23110954.001095425072710081733
...........................................................................................................................................................................TATTGCACATCTCCCGGCCT.....................................................................................2028204.5016409741293828447799188
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAA.................................................................................2414601.0046011728871127831
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAAA................................................................................2513822.0038223212750351319
............................................................................................................................................................................ATTGCACATCTCCCGGCCTAT...................................................................................2112956.00295622762006780
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATT..................................................................................2312262.002262755170114881
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAA...................................................................................2221986.0039721546771123452
.......................................................................................................................AGGACGGTATTTGTGACAATATG......................................................................................................................................2311845.00184510291530264219
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAAAA...............................................................................2611390.00139013091400616
.......................................................................................................................AGGACGGTATTTGTGACAATAT.......................................................................................................................................2211011.00101127176106621
...........................................................................................................................................................................TATTGCACATCTCCCGGCCC.....................................................................................202903.501807310018030
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAAAAA..............................................................................271662.0066265400062
...........................................................................................................................................................................TATTGCACATCTCCCGGCC......................................................................................192434.5086916512016892
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATC..................................................................................231417.004172072002035
............................................................................................................................................................................ATTGCACATCTCCCGGCCTA....................................................................................202389.507796025001684
.............................................................................................................................................................................TTGCACATCTCCCGGCCTAT...................................................................................201288.002881390001490
............................................................................................................................................................................ATTGCACATCTCCCGGCCTATA..................................................................................221249.002491270001220
............................................................................................................................................................................ATTGCACATCTCCCGGCCT.....................................................................................192233.50467379010870
............................................................................................................................................................................ATTGCACATCTCCCGGCCTATAAA................................................................................241205.0020519610080
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATG..................................................................................231167.0016785500770
............................................................................................................................................................................ATTGCACATCTCCCGGCCTATAA.................................................................................231157.00157107100490
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTT....................................................................................212144.5028914710011265
........................................................................................................................GGACGGTATTTGTGACAATATG......................................................................................................................................221116.0011611500010
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTC....................................................................................212102.502051491301366
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAT.................................................................................24189.008925000640
.......................................................................................................................AGGACGGTATTTGTGACAATATA......................................................................................................................................23186.008623500580
............................................................................................................................................................................ATTGCACATCTCCCGGCCTATT..................................................................................22182.008254000280
...........................................................................................................................................................................TATTGCACATCTCCCGGCCA.....................................................................................20281.00162117301410
..........................................................................................................................................................................ATATTGCACATCTCCCGGCCTAT...................................................................................23180.00807600040
.......................................................................................................................AGGACGGTATTTGTGACAATA........................................................................................................................................21179.007924200521
............................................................................................................................................................................ATTGCACATCTCCCGGCCTATAAAA...............................................................................25171.00716700040
..............................................................................................................................................................................TGCACATCTCCCGGCCTAT...................................................................................19154.005430200220
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAG...................................................................................22253.0010664400353
............................................................................................................................................................................ATTGCACATCTCCCGGCCTAA...................................................................................21252.5010576000290
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATTT.................................................................................24146.00469000361
...............................................................................................................................................................................GCACATCTCCCGGCCTAT...................................................................................18144.004429000150
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATCC.................................................................................24143.00434200010
..........................................................................................................................................................................ATATTGCACATCTCCCGGCCT.....................................................................................21242.008422501560
.......................................................................................................................AGGACGGTATTTGTGACAATATGA.....................................................................................................................................24139.003916500180
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAC.................................................................................24139.003912200250
........................................................................................................................GGACGGTATTTGTGACAATAT.......................................................................................................................................21138.00383700010
.......................................................................................................................AGGACGGTATTTGTGACAATAC.......................................................................................................................................22130.00300000300
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAG.................................................................................24130.00301920081
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATTC.................................................................................24130.003018000111
...........................................................................................................................................................................TATTGCACATCTCCCGGC.......................................................................................18228.505740400130
.......................................................................................................................AGGACGGTATTTGTGACAATATGC.....................................................................................................................................24128.00287300180
.............................................................................................................................................................................TTGCACATCTCCCGGCCTA....................................................................................19227.505534000210
............................................................................................................................................................................ATTGCACATCTCCCGGCCTATAAAAA..............................................................................26127.00272700000
.......................................................................................................................AGGACGGTATTTGTGACAATATGAAA...................................................................................................................................26127.00272430000
.............................................................................................................................................................................TTGCACATCTCCCGGCCTATA..................................................................................21127.002711000160
.............................................................................................................................................................................TTGCACATCTCCCGGCCT.....................................................................................18223.504724000230
.......................................................................................................................AGGACGGTATTTGTGACAAT.........................................................................................................................................20123.002311100110
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTG....................................................................................21222.00449200330
.............................................................................................................................................................................TTGCACATCTCCCGGCCTATAA.................................................................................22120.00207000130
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAAT................................................................................25120.002010000100
.......................................................................................................................AGGACGGTATTTGTGACAATATGT.....................................................................................................................................24120.00207200110
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAAAT...............................................................................26118.00181100070
............................................................................................................................................................................ATTGCACATCTCCCGGCCC.....................................................................................19215.50310000310
.......................................................................................................................AGGACGGTATTTGTGACAATAAA......................................................................................................................................23115.00151210020
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATAAC................................................................................25115.00154000110
.......................................................................................................................AGGACGGTATTTGTGACAATATGAA....................................................................................................................................25113.0013460030
.........................................................................................................................GACGGTATTTGTGACAATATG......................................................................................................................................21113.00131100020
............................................................................................................................................................................ATTGCACATCTCCCGGCCTATC..................................................................................22113.00131200010
.............................................................................................................................................................................TTGCACATCTCCCGGCCTATAAA................................................................................23112.00121200000
.......................................................................................................................AGGACGGTATTTGTGACAATATGCC....................................................................................................................................25112.0012300090
.......................................................................................................................AGGACGGTATTTGTGACAATAA.......................................................................................................................................22111.0011810011
..........................................................................................................................................................................ATATTGCACATCTCCCGGCCTA....................................................................................22210.50211200090
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTATCCC................................................................................25110.00101000000
..............................................................................................................................................................................TGCACATCTCCCGGCCTATA..................................................................................20110.0010300070
droVir3
CATGAAAAG----TTAAAGCTG--GA--------AAA--------ACTAG--T-----------G----------------------------CGTCC-GCATGACC------ATTTTAAGGACGGTATTTGTGACAATATGTGCAG-TTAAATCAAT-TT--GTTTAGCATATTGCACATCTCCCGGCCTAAAAATGAACCGTGCTCTCTTCGATATATGGAACAT---------------------------------------TAAAACAATTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................................................................................AGGACGGTATTTGTGACAATATG......................................................................................................................................231406466.0040646656081293295393562543545057487452860961000106180014621860164760294839103977833297219447315391883290324184068921345433221015412011557145761015238323210109133163114011621385396153996748994257932452714688187791948725355332939707106472473530218
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAA...................................................................................221348798.00348798701134097784558382125665541455927411304031294088035535434388357186252813397542114783080792967407980764981698103223922075130095097978350810322955782391521321027342830746382821487442597678748996740996372812042422519261182952491722908320256896853
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAA..................................................................................231183276.0018327640473545184123102922011268458430100053400125295119903379203794252530888060002155093675962361872809326741637441315259254173352701477438292602388319814022812335108251036583971259311129543169737129840783586062533965669049
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTA....................................................................................212112732.5022546537111924658645426728236134151102029171410501297123211013186263741933078175412487461946719923775757229904369581687194142034332738217816421852149999919065371013430289257196684287281090931010415888770655139811777116133117999614136751269440972662354058975217
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAA.................................................................................241103384.0010338461279496624131704222232300000040040130264315115041076837133226041774205650602011181019544531515513910160621392146239107114534600014171077944686916004392136301949236521152809558668235992744610511
.......................................................................................................................AGGACGGTATTTGTGACAATAT.......................................................................................................................................22191860.009186046513287190157726823142112628000001602132551775223512501831072622594314177619357146851811581239110870681045811975353639011521627030295257121541216113262225424201270172015742311110623226344878509821
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAA................................................................................25160457.00604572119021807030304410570000001001675233097317715155261107175410042984796101245130803715137521577230002122100099564064135831363568868039343436047132825678502257118535
...........................................................................................................................................................................TATTGCACATCTCCCGGCCT.....................................................................................20248401.00968021497810016384631383593013428162111882113040214735411406160910151794932949799452115523322943118205268292461324728837187375462746440735228157718230616911484797412820774952001019964735594439816021403108910861337156443032656295955326040
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAAA...............................................................................26119354.0019354006823920003003351000000000725511840043111531702372558861833909181031002200210100024000449291205018541023117130707664999571995180619602845
.......................................................................................................................AGGACGGTATTTGTGACAATATA......................................................................................................................................2319847.009847271171000010065770000001001151532233462230211445281062154989055545540102334334161912011156100022812791241141219818510215313316310793543748611032
.......................................................................................................................AGGACGGTATTTGTGACAATA........................................................................................................................................2118564.0085641130231202011320420000000001355613135186123840025634925221719102211593741117260000712817842855815747430549561545749121123313486
.......................................................................................................................AGGACGGTATTTGTGACAATATGA.....................................................................................................................................2417654.007654803711604140334800000020047564178120271592412131051572611371731200010201100000011500031401338137193621208151324626229234611711
.......................................................................................................................AGGACGGTATTTGTGACAATATGTG....................................................................................................................................2516377.00637700650878425109115877110001016300781872261118105110675381196165361364458300200000000100000000204012619614611316728426114118621231312225295877
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAAAA..............................................................................2715469.0054690031981000000012000000000009843160190001920104602934890160000010001000000210001921045274692402522811914227553526510753
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAT..................................................................................2314335.0043350017311130000002120000000000444406148232141891087621161041218128811143683821130021800028581681361564464442333083103121619576125135
.......................................................................................................................AGGACGGTATTTGTGACAATATGT.....................................................................................................................................2413802.003802150178516438227614290000006009253412110311107174203047795112236414386074593330016100001923451382339144155134115841402888578211281
.......................................................................................................................AGGACGGTATTTGTGACAATATGAAA...................................................................................................................................2613794.0037940039230202096338000000000346412365810219108511034184230001000000001000000170006632631565306811631462057686238305
.......................................................................................................................AGGACGGTATTTGTGACAATATAAA....................................................................................................................................2513032.003032004612010101220600000000066617165321213740536040456240121010001000000000040005215470466214103112117867106177215
...........................................................................................................................................................................TATTGCACATCTCCCGGCC......................................................................................1922906.505813621296120173723020910000011500537534492130301625669745815647515214635212018141526712762600511710115692421171836156114284654744111702846171149
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAG..................................................................................2312692.00269230713920000001800000000005212542212818836681473910352321145211102222010100060001013181163157173150879011912717292112150212
.......................................................................................................................AGGACGGTATTTGTGACAATATGAA....................................................................................................................................2512569.00256920123100010016500000000012121904331027205783216857001010010200001000012000231243541122918208135181816477133180
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAC..................................................................................2312489.002489002643111000106000000070131188133209130111318132031210648535210111002130002513712619118917986129121144166171182173206
.......................................................................................................................AGGACGGTATTTGTGACAATATAA.....................................................................................................................................2412017.002017101602001000456000000000641261154546111731636134895100010011000000000000000102118247242144054103105463588113
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAC...................................................................................2221958.503917804923541921100030200100001600331312188572624618123114304412221242321010000031000089128941341561404865831118915212831
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAC.................................................................................2411569.001569201325100000013000000000014322103777145963097223256021120300011300056151128133293126273034112152154158206
............................................................................................................................................................................ATTGCACATCTCCCGGCCTAA...................................................................................2111405.001405001116541000000012000000000061115310313061010820010100000100000000010000856221182410211932342
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAC................................................................................2511346.0013460067000000002000000000002040000050161512003310010100100000000000001141251364152528102131141237263
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAT.................................................................................2411133.0011330024340000000010000000100011989111262125015174827000411935304251000000000004847634810662285532745368524859
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAG.................................................................................2411131.00113100231200000000400000010000348521021101613251240135132031041000001010004784807473412939476669726192121
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAAC...............................................................................261865.00865009400000000000000000001301000001012611001100000001000000000000017769592200015191115185179
............................................................................................................................................................................ATTGCACATCTCCCGGCCTAAA..................................................................................221811.008110062055000000002000000000002581330190106231210000000001000000000000000333258244312324
.......................................................................................................................AGGACGGTATTTGTGACAATATT......................................................................................................................................231735.007356042201000132200000010041233131751324220299348451368352300214140000475891028141791686821184658
...........................................................................................................................................................................TATTGCACATCTCCCGGCCA.....................................................................................202635.0012700023017203030111930000002001025828923311412316146327610200020010200000000610008163147831231037713113134
...........................................................................................................................................................................TATTGCACATCTCCCGGC.......................................................................................182627.5012551401828030305050000000200124724303411751052369551014414014323121000000020111001408936102754564859542934495649
.......................................................................................................................AGGACGGTATTTGTGACAA..........................................................................................................................................191607.006071004012100300000000001003709116105142050220017130023012010000030000011925181069139585238203177
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTT....................................................................................212557.5011151602239370102002210000005006161415133627163915220154175525984443102520210035500013271912454954395949464197
.......................................................................................................................AGGACGGTATTTGTGACAAT.........................................................................................................................................201509.0050910172311012004001000070034811616231121727315112411000001100000100000000437775306201022517132926
.......................................................................................................................AGGACGGTATTTGTGACA...........................................................................................................................................181447.004471003030211120130000003003127355462143484200100000000000000000000424440421341179181944372722
..........................................................................................................................ACGGTATTTGTGACAATATG......................................................................................................................................201394.003942020000000010000000000011013000000002000000000000000000000000000044971673452408270056
............................................................................................................................................................................ATTGCACATCTCCCGGCCTA....................................................................................202393.5078710641270000000020000000000112220002509856100000000210201000000200002032381276811362
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAAAC..............................................................................271378.00378004100000000000000000000002000002011101002000100001000000000000003726200000002249506493
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTG....................................................................................212373.5074710018900000020000000000001113731411241162145276148232413503000000017000139595413624277123271551721
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAG...................................................................................222362.0072470602720200000510000004003135127415811100581710712111021020110100014200079403330344019818272037384753
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAT................................................................................251353.0035300611000000003000000000006140010480111227310011100000000001000300001432242132266153825181734
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTC....................................................................................212344.5068912115010337710020120000000420052534122121119326315063200693141331200100020110600045311142013171163110
.......................................................................................................................AGGACGGTATTTGTGACAATATGTAA...................................................................................................................................261304.003040050100000010000000000007424701011401618381620000001000000000000010002032271801000026351518
.......................................................................................................................AGGACGGTATTTGTGACAATATC......................................................................................................................................231304.003041904300000100100000000000123334522000010031384656172313635002140000221011017171716221875014
............................................................................................................................................................................ATTGCACATCTCCCGGCCT.....................................................................................192295.005900052691000100041000000000020310000401410340000010000010000000000000013102010010032
............................................................................................................................................................................ATTGCACATCTCCCGGCCTAAAA.................................................................................231294.00294002156000000000000000000002130000040359800000000000000000000000004123121310213365
...........................................................................................................................................................................TATTGCACATCTCCCGGCCC.....................................................................................202286.5057313022286500000011200000010021010220241005060030110102000000000160000041216897120112132510
......................................................................................................................AAGGACGGTATTTGTGACAATAT.......................................................................................................................................231252.002520020000030200000000000002010010010131000010001000000000000000002028143017171014121522451726
.......................................................................................................................AGGACGGTATTTGTGACAATATGC.....................................................................................................................................241244.0024440150000010010000000000010454333003212100601000210010100010000006181021241210121127934317
.......................................................................................................................AGGACGGTATTTGTGACAATATGTA....................................................................................................................................251239.002390220000000100000000000000267000140737110000000000000000000000004138332648009328108167
.......................................................................................................................AGGACGGTATTTGTGACAATAA.......................................................................................................................................221231.002311050011102001000000000014142252315355132810200000000000000000000101000141110341100124556
.......................................................................................................................AGGACGGTATTTGTGACAATATGTGA...................................................................................................................................261222.00222000000000000000000010000331012010050753700000000000000000000000001028243233301321742015
........................................................................................................................GGACGGTATTTGTGACAATATG......................................................................................................................................221221.00221001471000000000000000000001045100220215120000000000000000000000001021034531614277
.......................................................................................................................AGGACGGTATTTGTGACAATAAA......................................................................................................................................231216.0021650111000000022000000000010747443205213110000000000010000000010004036311031120111681618
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAAT...............................................................................261201.002010043000000001000000000003040000100191720000001000000000000000000132024163210131018171818
............................................................................................................................................................................ATTGCACATCTCCCGGCCTAAAAA................................................................................241189.001890015300000000000000000000020001000100011100000000000000000000000003001130100013223
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAACA...............................................................................261188.001880000000000000000000000000000000000121789111000000000000000000000000108360100021063117
.....................................................................................................................TAAGGACGGTATTTGTGACAATAT.......................................................................................................................................241185.00185101000004020100000000000131200000011002000001000000000000000000011083972374636951215
.............................................................................................................................................................................TTGCACATCTCCCGGCCTAA...................................................................................201177.001770074171000000010000000000141741001905109900000000000000000000000002020025422010012
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAG................................................................................252159.00318008300000000000000000000301110005044102001200000000000000000100021282221261078892320222936
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAAAAC.............................................................................281151.0015100320000000000000000000000000000100030000000100000000000000000000161417100000710142834
.............................................................................................................................................................................TTGCACATCTCCCGGCCTAAA..................................................................................211145.0014500511500000001100000000001632210107012871000000000000000000000000001022200311021002
......................................................................................................................AAGGACGGTATTTGTGACAATATG......................................................................................................................................241143.00143001001000000010000000000001100000011210001000000102010000000000015924194612313132296
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAATC.................................................................................241135.0013540113000000000000000020000000592901000000043411112000010100000000220013107562010301
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAATT.................................................................................241128.00128005400000000000000000000111100001000100000000010100000000000000212171721101371771113
.........................................................................................................................GACGGTATTTGTGACAATATG......................................................................................................................................211106.0010600800000000000000000000000210000001100000000000000000000000000000879796386514614
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAACA..............................................................................271104.001040000000000000000000000000000000000613296000000000000000000001000000643010000448613
.......................................................................................................................AGGACGGTATTTGTGACAATATGG.....................................................................................................................................241102.00102101000000000000000000001000000000000000000000000000000000001000011415220001121039119
.......................................................................................................................AGGACGGTATTTGTGACAATATCC.....................................................................................................................................241102.00102280800300000000000000000000204555000000001000000000000000000000001000538311820000
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAAG...............................................................................26193.009300600000000000000000000010010000000141001000000000000000000000012485223402557919
...........................................................................................................................CGGTATTTGTGACAATATG......................................................................................................................................19192.009200100000000000000000100000110000000010000000000000000000000000000101221171871700201
...........................................................................................................................................................................TATTGCACATCTCCCGG........................................................................................17285.0017000000000000000000000000000000000000000000000000000000000000000030151114000000183102967
.......................................................................................................................AGGACGGTATTTGTGACAATATGTGT...................................................................................................................................26184.00840000000030021300000000000174010040312000001000100000000000000000055453122652208
............................................................................................................................................................................ATTGCACATCTCCCGGCCTAAAAAA...............................................................................25183.008300711000000000000000000000000000000003000000000000000000000000000010000000000025
...............................................................................................................................................................................GCACATCTCCCGGCCTAA...................................................................................18182.0082002620000000001000000100031100101003022000000000000000000000000071500012105130120
...........................................................................................................................................................................TATTGCACATCTCCCGGCCG.....................................................................................20281.5016310031000000000000000010000100000000000030196813706302024001410100025598105141360062
...........................................................................................................................................................................TATTGCACATCTCCCGGCCTAAAAAAT..............................................................................27181.00810060000000002000000000000110000030106200010000000000000000000000213810000014611210
.......................................................................................................................AGGACGGTATTTGTGACAATATGTC....................................................................................................................................25180.00801000000000000000000000000010001000000000000010001100000001010000000015971581800000
.......................................................................................................................AGGACGGTATTTGTGAC............................................................................................................................................17176.00760000000000000000000000000000000000000000000000100000000000000000081119000000181189
droGri2
TAAGCATCT----TGCAATTT----------------------------------ATATGGCTTGCAGTTATCTGCA------------------------TTAACC------ATTTTCAGGATGGAAGCTGTGACAATATGTAGGT-TTTAATTAAT-TTATATTTCATATATTGCACACCTCCCGGCCTATAAATGATTCTTGAGCTCCTCGATT---T---T---------GTTTATATATCTAA----A--------GTGT-TGA----AAASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...........................................................................................................................................................................TATTGCACACCTCCCGGCCTAT...................................................................................22120.0020200
...........................................................................................................................................................................TATTGCACACCTCCCGGCCT.....................................................................................2019.00990
...........................................................................................................................................................................TATTGCACACCTCCCGGCCTA....................................................................................2115.00550
.......................................................................................................................AGGATGGAAGCTGTGACAATAT.......................................................................................................................................2215.00505
.......................................................................................................................AGGATGGAAGCTGTGACAATATG......................................................................................................................................2314.00404
...........................................................................................................................................................................TATTGCACACCTCCCGGCCTT....................................................................................2113.00330
.......................................................................................................................AGGATGGAAGCTGTGACAAT.........................................................................................................................................2013.00312
.......................................................................................................................AGGATGGAAGCTGTGACAA..........................................................................................................................................1912.00211
.......................................................................................................................AGGATGGAAGCTGTGACAATA........................................................................................................................................2112.00202
............................................................................................................................................................................ATTGCACACCTCCCGGCCT.....................................................................................1912.00220
............................................................................................................................................................................ATTGCACACCTCCCGGCCTAT...................................................................................2111.00110
...........................................................................................................................................................................TATTGCACACCTCCCGGCC......................................................................................1911.00110
.......................................................................................................................AGGATGGAAGCTGTGACAATATGT.....................................................................................................................................2411.00101
............................................................................................................................................................................ATTGCACACCTCCCGGCCTA....................................................................................2011.00110
.......................................................................................................................AGGATGGAAGCTGTGACA...........................................................................................................................................1811.00101
dp5
AGCT-------------------------------------------------------------------------------------------------------GCTTTGATTTGTAGGCCGTGGTTCTTGCAAATACGGA----------------T--TCATAACGTATTGCACTAGCCCCGGTCCAAAAAACAATAGCAA---CGCCGGCAA------CAG---CAAAGTATGTACAATTAT------------------------AGTGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCA....................................................................................2111490.0014900104252111094070191470
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCC.....................................................................................201898.00898067211615349153340
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAA...................................................................................221826.008260567547361019181150
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACG......................................................................................................................................231637.00637059600410305271
...........................................................................................................................................................................TATTGCACTAGCCCCGGTC......................................................................................191237.00237013784218270410
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAA..................................................................................231188.0018801084047023240
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCA....................................................................................20198.009809700010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAA.................................................................................24193.0093063191401050
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAA...................................................................................21175.007507120001010
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCA.....................................................................................20172.007206210016020
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCT.....................................................................................20169.00690291214210110
............................................................................................................................................................................ATTGCACTAGCCCCGGTCC.....................................................................................19165.006506230000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCC....................................................................................21162.0062040547210210
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAA................................................................................25161.0061044130000040
.......................................................................................................................AGGCCGTGGTTCTTGCAAATAC.......................................................................................................................................22161.006106510021460
.......................................................................................................................AGGCCGTGGTTCTTGCAAATA........................................................................................................................................21141.0041040001150210
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCG.....................................................................................20141.004108010622040
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCCC...................................................................................22126.00260505025090
.......................................................................................................................AGGCCGTGGTTCTTGCAAAT.........................................................................................................................................20125.002503000030190
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAAA...............................................................................26121.002101920000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCT....................................................................................21116.00160600004060
...........................................................................................................................................................................TATTGCACTAGCCCCGGTTT.....................................................................................20115.00150401032050
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACGA.....................................................................................................................................24115.00150910000050
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAA..................................................................................22114.001401300000010
...........................................................................................................................................................................TATTGCACTAGCCCCGGTT......................................................................................19114.001404000000100
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAT...................................................................................22114.00140500200070
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAT..................................................................................23113.00130520000150
............................................................................................................................................................................ATTGCACTAGCCCCGGTC......................................................................................18112.001201200000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTTTT....................................................................................21111.00110100012070
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTT....................................................................................21111.00110300001070
...........................................................................................................................................................................TATTGCACTAGCCCCGGT.......................................................................................18110.00100601002010
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAAA.................................................................................23110.00100910000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAC...................................................................................2219.0090710001000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAAAA..............................................................................2718.0080800000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTAA.....................................................................................2018.0080700000010
.......................................................................................................................AGGCCGTGGTTCTTGCAAATAA.......................................................................................................................................2218.0080000000080
...........................................................................................................................................................................TATTGCACTAGCCCCGGTA......................................................................................1917.0070500100010
............................................................................................................................................................................ATTGCACTAGCCCCGGTCA.....................................................................................1917.0070700000000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACGT.....................................................................................................................................2416.0060100000050
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAAAA................................................................................2416.0060600000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTTA.....................................................................................2016.0060000002040
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCCT...................................................................................2216.0060200000040
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAG...................................................................................2216.0060500001000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCTT...................................................................................2216.0060200001030
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACC......................................................................................................................................2315.0050001010030
.............................................................................................................................................................................TTGCACTAGCCCCGGTCC.....................................................................................1815.0050500000000
.............................................................................................................................................................................TTGCACTAGCCCCGGTCCA....................................................................................1915.0050400000010
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTC....................................................................................2115.0050101010020
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCCCC..................................................................................2325.00100303002020
.............................................................................................................................................................................TTGCACTAGCCCCGGTCCAA...................................................................................2015.0050401000000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACA......................................................................................................................................2314.0040200000020
.......................................................................................................................AGGCCGTGGTTCTTGCAAAA.........................................................................................................................................2014.0040000000040
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTTC...................................................................................2214.0040000000040
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCG....................................................................................2114.0040200110000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAG................................................................................2513.0030200000010
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACGG.....................................................................................................................................2413.0030000000030
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCATTT.................................................................................2413.0030000000030
........................................................................................................................GGCCGTGGTTCTTGCAAATACG......................................................................................................................................2213.0030300000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAT.................................................................................2413.0030201000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTTT...................................................................................2213.0030100010010
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAAAAA...............................................................................2512.0020200000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAG..................................................................................2312.0020020000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCATT..................................................................................2312.0020100001000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAAAAAA..............................................................................2612.0020200000000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATC........................................................................................................................................2112.0020000000020
...........................................................................................................................................................................TATTGCACTAGCCCCGGTTTG....................................................................................2112.0020000001010
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACGGA----------------T--.................................................................................................................2612.0020000000020
..........................................................................................................................................................................GTATTGCACTAGCCCCGGTCCA....................................................................................2212.0020200000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTCT...................................................................................2212.0020000010010
..........................................................................................................................................................................GTATTGCACTAGCCCCGGTCC.....................................................................................2112.0020200000000
.............................................................................................................................................................................TTGCACTAGCCCCGGTCCAAA..................................................................................2112.0020101000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAG.................................................................................2412.0020110000000
........................................................................................................................GGCCGTGGTTCTTGCAAATA........................................................................................................................................2012.0020200000000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACCC.....................................................................................................................................2412.0020000000020
...........................................................................................................................................................................TATTGCACTAGCCCCGG........................................................................................1712.0020000000020
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAT..................................................................................2212.0020200000000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCT.....................................................................................1911.0010100000000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATT........................................................................................................................................2111.0010000000010
.......................................................................................................................AGGCCGTGGTTCTTGCAAATAAA......................................................................................................................................2311.0010000000010
........................................................................................................................................................................ACGTATTGCACTAGCCCCGGTCCAG...................................................................................2511.0010100000000
.............................................................................................................................................................................TTGCACTAGCCCCGGTCA.....................................................................................1811.0010100000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAGT.................................................................................2411.0010010000000
..............................................................................................................................................................................TGCACTAGCCCCGGTCCAAA..................................................................................2011.0010100000000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCC....................................................................................2011.0010001000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTG....................................................................................2111.0010000000010
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAT................................................................................2511.0010010000000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAT...................................................................................2111.0010100000000
....................................................................................................................................................................CATAACGTATTGCACTAGCCCCGGTCC.....................................................................................2711.0010001000000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCTT...................................................................................2111.0010100000000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATTA.......................................................................................................................................2211.0010100000000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCG....................................................................................2011.0010100000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTTTC....................................................................................2121.0020000000020
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCAC....................................................................................2111.0010100000000
.......................................................................................................................AGGCCGTGGTTCTTGCAA...........................................................................................................................................1811.0010000000010
...........................................................................................................................................................................TATTGCACTAGCCCCGGA.......................................................................................1811.0010000000010
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACT......................................................................................................................................2311.0010000000010
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCATT..................................................................................2211.0010001000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAATT.................................................................................2411.0010000000010
..........................................................................................................................................................................GTATTGCACTAGCCCCGGTC......................................................................................2011.0010100000000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAC..................................................................................2311.0010100000000
..............................................................................................................................................................................TGCACTAGCCCCGGTCCAAAAA................................................................................2211.0010100000000
.............................................................................................................................................................................TTGCACTAGCCCCGGTCCAAAG.................................................................................2211.0010010000000
droPer2
AGCT-------------------------------------------------------------------------------------------------------GCTTTGATTTGTAGGCCGTGGTTCTTGCAAATACGAA----------------T--TCATAACGTATTGCACTAGCCCCGGTCCAAAAAACAATAGCAA---CGCCGGCAA------CAG---CAAAGTATGTACAATTATTCAAAGAATCTTCACATTTTTCATGAATSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCA....................................................................................211376.00376529170208
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAA...................................................................................221207.00207118617102
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCC.....................................................................................201200.00200215628509
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAA..................................................................................23156.00560488000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTC......................................................................................19142.00422268303
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCA.....................................................................................20129.00290223004
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCA....................................................................................20128.00280280000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAA...................................................................................21124.00240240000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAA................................................................................25119.00190181000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAA.................................................................................24117.00170152000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCC.....................................................................................19114.00140140000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCT.....................................................................................20112.0012061005
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACG......................................................................................................................................23110.0010091000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCG.....................................................................................2015.005010004
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCT....................................................................................2115.005011003
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAA..................................................................................2214.004040000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACGA.....................................................................................................................................2414.004040000
...........................................................................................................................................................................TATTGCACTAGCCCCGGT.......................................................................................1814.004040000
.......................................................................................................................AGGCCGTGGTTCTTGCAAAT.........................................................................................................................................2013.003001002
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAT...................................................................................2213.003020100
.......................................................................................................................AGGCCGTGGTTCTTGCAAATA........................................................................................................................................2113.003001002
...........................................................................................................................................................................TATTGCACTAGCCCCGGTT......................................................................................1912.002010100
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAT..................................................................................2312.002011000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAAA...............................................................................2612.002020000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCC....................................................................................2112.002000101
.............................................................................................................................................................................TTGCACTAGCCCCGGTCCAA...................................................................................2012.002020000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCGT...................................................................................2212.002000002
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTC....................................................................................2112.002000002
...........................................................................................................................................................................TATTGCACTAGCCCCGGTTA.....................................................................................2012.002010001
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTT....................................................................................2112.002000002
............................................................................................................................................................................ATTGCACTAGCCCCGGTC......................................................................................1812.002020000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCGTT..................................................................................2312.002000002
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAAAA................................................................................2412.002020000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAAAAAA..............................................................................2711.001010000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACGT.....................................................................................................................................2411.001000001
.............................................................................................................................................................................TTGCACTAGCCCCGGTCCAAA..................................................................................2111.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTA......................................................................................1911.001000001
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCCT...................................................................................2211.001010000
........................................................................................................................GGCCGTGGTTCTTGCAAATACG......................................................................................................................................2211.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAC...................................................................................2211.001010000
.......................................................................................................................AGGCCGTGGTTCTTGCAAATACA......................................................................................................................................2311.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAATG.................................................................................2411.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTAT.....................................................................................2011.001001000
..............................................................................................................................................................................TGCACTAGCCCCGGTCCA....................................................................................1811.001010000
..........................................................................................................................................................................GTATTGCACTAGCCCCGGTCCAA...................................................................................2311.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCTTT...................................................................................2211.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTTT.....................................................................................2011.001000100
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCCC...................................................................................2111.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTAA.....................................................................................2011.001010000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAC...................................................................................2111.001010000
...............................................................................................................................................................................GCACTAGCCCCGGTCCAA...................................................................................1811.001010000
.............................................................................................................................................................................TTGCACTAGCCCCGGTCA.....................................................................................1811.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTTTT....................................................................................2111.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAG...................................................................................2211.001010000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAT..................................................................................2211.001010000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCCAAAA.................................................................................2311.001010000
............................................................................................................................................................................ATTGCACTAGCCCCGGTCA.....................................................................................1911.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCAC....................................................................................2111.001010000
...........................................................................................................................................................................TATTGCACTAGCCCCGGTCCAAGT.................................................................................2411.001000001
droAna3
GATATT-------------------------------------------------ATACGAACAGCAGCGATCGCTA--TCTGAGAGAAATATTTGTT-GCCAGATT------ATCTTCAGGACGGTATTTGTGTCAATATGGAT--------------AT--TTCAAACATATTGCACTTATACCGGCCTGATGATCTCCGGCGC--TCGTCATCT---G---T-GACT---------------------------------------AAAAGTGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGA...................................................................................221104879.0010487912507892243069293119
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAA..................................................................................23113773.0013773104912489232102
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAAA.................................................................................2418865.0088651007777187000
...........................................................................................................................................................................TATTGCACTTATACCGGCC......................................................................................1918002.008002979849000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTG....................................................................................2116004.00600412654440280586
............................................................................................................................................................................ATTGCACTTATACCGGCCTGA...................................................................................2111128.0011287853385000
...........................................................................................................................................................................TATTGCACTTATACCGGCCT.....................................................................................201775.0077515258537001
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAT..................................................................................231560.00560544937051
.......................................................................................................................AGGACGGTATTTGTGTCAATATG......................................................................................................................................231527.00527176260522316
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGC...................................................................................221365.003651431239000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGT...................................................................................221355.003555127030220
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAC..................................................................................231312.0031293021000
.......................................................................................................................AGGACGGTATTTGTGTCAATAT.......................................................................................................................................221205.002051817212030
...........................................................................................................................................................................TATTGCACTTATACCGGCCC.....................................................................................201159.0015911571000
............................................................................................................................................................................ATTGCACTTATACCGGCCTGAA..................................................................................221147.0014764812000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAG..................................................................................231146.00146201213011
............................................................................................................................................................................ATTGCACTTATACCGGCCTGAAA.................................................................................231122.0012265570000
.............................................................................................................................................................................TTGCACTTATACCGGCCTGA...................................................................................201117.0011736810000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAAT.................................................................................241114.0011461080000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGG...................................................................................22198.009832597000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAAC.................................................................................24192.00928795000
............................................................................................................................................................................ATTGCACTTATACCGGCCTG....................................................................................20183.008369131000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGCA..................................................................................23147.004713412000
...........................................................................................................................................................................TATTGCACTTATACCGGCCA.....................................................................................20144.00443356000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGATA.................................................................................24143.00433371200
...........................................................................................................................................................................TATTGCACTTATACCGGCCTA....................................................................................21137.00378290000
............................................................................................................................................................................ATTGCACTTATACCGGCC......................................................................................18137.00370370000
.......................................................................................................................AGGACGGTATTTGTGTCAATATA......................................................................................................................................23136.00366255000
...........................................................................................................................................................................TATTGCACTTATACCGGC.......................................................................................18135.00352264210
.......................................................................................................................AGGACGGTATTTGTGTCAATA........................................................................................................................................21135.00354235012
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGACA.................................................................................24135.00352303000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTT....................................................................................21134.00344255000
.............................................................................................................................................................................TTGCACTTATACCGGCCTGAAA.................................................................................22132.00324271000
........................................................................................................................GGACGGTATTTGTGTCAATATG......................................................................................................................................22128.00282710000
.............................................................................................................................................................................TTGCACTTATACCGGCCTGAA..................................................................................21126.00265201000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGTA..................................................................................23125.002541011000
..............................................................................................................................................................................TGCACTTATACCGGCCTGA...................................................................................19122.00228140000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGATT.................................................................................24121.00219120000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAAAC................................................................................25118.00183150000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGCAA.................................................................................24117.00170170000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTAT...................................................................................22116.00160160000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGGA..................................................................................23116.0016592000
...............................................................................................................................................................................GCACTTATACCGGCCTGA...................................................................................18115.00151122000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAAAT................................................................................25115.00151140000
.......................................................................................................................AGGACGGTATTTGTGTCAATATGA.....................................................................................................................................24115.00151121001
...........................................................................................................................................................................TATTGCACTTATACCGGCCTC....................................................................................21115.00150131100
.......................................................................................................................AGGACGGTATTTGTGTCAATATT......................................................................................................................................23114.00140212000
............................................................................................TTTGTT-GCCAGATT------ATCTTC.............................................................................................................................................................20112.0012093000
............................................................................................................................................................................ATTGCACTTATACCGGCCT.....................................................................................19110.0010811000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAGA.................................................................................24110.0010091000
.......................................................................................................................AGGACGGTATTTGTGTCAAT.........................................................................................................................................20110.0010361000
.......................................................................................................................AGGACGGTATTTGTGTCAATAC.......................................................................................................................................22110.00100100000
..........................................................................................................................................................................ATATTGCACTTATACCGGCCTGA...................................................................................2319.009540000
...........................................................................................................................................................................TATTGCACTTATACCGGCT......................................................................................1918.008080000
.......................................................................................................................AGGACGGTATTTGTGTCAATATGT.....................................................................................................................................2418.008241010
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGTAA.................................................................................2418.008440000
...........................................................................................................................................................................TATTGCACTTATACCGGCCTGAAAG................................................................................2517.007070000
droBip1
A-----------------------------------------------------------------------------------------------------------------------GGTCGGTATTTGTGACAATATGAT---------------AT--TTCAATCATATTGCACTTGTACCGGCCTGATAATATCTGGCAT-----TCGTCATCTGTGAGTCTGT---------------------------------------GAAAAGTSizeHit CountTotal NormTotal
No Reads
droFic1
------------------------------------------------------------------------------------------------------------------------GGACGGAAGATGCGCCAGTATGCGG-----------A--TT--TTTAAGCATATTGCACATTTACCGGCCTAGTAATGCACTGGCTATTCATCAATT---A---T-TTAT---------------------------------------GCAAATGSizeHit CountTotal NormTotal
No Reads
droRho1
AAAC-GG------------CGA------------AAA--------GT--GTTC-----------A------------------------AA--CTAAGTCCTAGGTT------GTTTTTCGGACGGTATTTGTGACAATATGCTT-----------A--AT--TTTAGACATATTGCACATTTACCGGCCTGAAATTAACATGGATATTCTTCGATAT------TT-------------------------------------------GTAAAGTSizeHit CountTotal NormTotal
No Reads
dm3
TAAT-------------------------------TAGTTTTGTTGT--GTTTTTAAACTCCTTGCAATAGGCGGCAAGACGGTGAAAAATCGAAATT-TCTAGATC------ATTTTTCGGACGGTATATGGGTTAATATTTC------------AT-TT--GTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAA------GTGAAA---------------------------------------AAAAAGTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGA...................................................................................221534179.005341791030736150176397042201000001708001816280101300000428219631660585995877121268787210128319310711267135921711368391000212207000000000000000000331322046934974720319262733425436634125891504636891813416345508244403115573515132802170001260311638613226361143930592144641731040152317999426599568815796519783811001610100400000000000122201901233018420500040093854137163664561214301472101155252586736325594170100107921831782094036521261272083509748615349624729865416190019010014494012461271632013562184027626002000077126431604016420141584299105367652242709533309690019213000135118018587275104889918793949446415110337428124829151312349005868850141236003721105710956122128315
...........................................................................................................................................................................TATTGCACATTCACCGGCCTG....................................................................................21136352.0036352001013201525011000000002475972300100000001285459129837213991643973419529569151613500011140000000000000000000100019661706034810115111493924210132322711530607328154502360010003110402253516120443841119333149138185119102481013668228193150850000000000011030007010000000000230115920554000119048290101151570223000001092644512412533288151320821643298917254261000210008240740111232003907200620000000140082140004189902727084181390357112400120000003031641092715172135841525740024240338120250062150001019139102692224005200
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAA..................................................................................23129931.00299311000041734111016100000004211681000010000054725651531317526862247411393211000496500000000000000000000000354161148128373002174098373500081516600639495261048431175001000000000212112871357142133379983103292413331127741144617000000000002701003926100100000014191471091900282658342001036490100000009134020461294214014423059239023713557000257600610020000004002003001200000001004000041710292335393941330271817000000000450620075398581198074001110319500010031000009321314865000001
.......................................................................................................................CGGACGGTATATGGGTTAATATT......................................................................................................................................23124229.0024229001000200101000000002628320000000000445285412463186531611610937134127687818485000250000000000000000000000057182784700001008017100000120293043410120000000000000000000000008292282123642150384160102813082341900000000000000000001000000000000034779718838122142083500010013817441126502002541613041477201136153216000000004505600100000100000920000000500581200020395324361211336921150043010000799305102201020290835536101600440180436081611341047757312916132190330177901107
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAA.................................................................................24112976.001297600002198110700000000214170000000000720104399026136626057812420001412000000000000000000000002101925351221100033131555220005240029212212736217300100010000010011061101301835034570361622941125334116000000000000400000602000000000021075849150004028100100235600000000007420760587813390879203895123270000200001060000010011000000000000000000000146360581181224252210700100000010911009266223496011007381080000000000000120471127000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAT..................................................................................2316609.006609000000233103000000000701380000000000036819155441125109675000000000000000000000000010027365730230000200150112002102010261221141114000000000000000001820165130320294566151142121467000000000000000000100000200000078523391000353160110005400000000053112407385363441616661615806100001001104000001004010010000000020051100611244011173319812980020100004810000111471711000006250012004000010211012000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGA...................................................................................2115597.005597000000100000000000003302300000000001879571314217191081254000110000000000000000000000027204726000000020610103100008002430012001000000000000030142419152601101913101764204612100000000000000000030000000000000132300010010000001000000000141001398249309295575446484708000000001309000001002040001000000000019100034248392143124120213005000000222000140108154202000014044700002007000000222287000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGT...................................................................................2214637.004637000001110100000000003631030000000000181513810310427912514381621158000000000000000000000000000124621132800000105014900110400104211200230010000010101000020144240532341512248211412481619400000000000020200000000000000000384152055000149052501000660000000001352725124279113163107270119339000000002301500000200704000000000002001410004112846105613105127200200000021130032766172856450017164720020012100010561676000010
...........................................................................................................................................................................TATTGCACATTCACCGGCCT.....................................................................................2014505.00450500000115100300000000021438200000000001786101416821430228426118247200032000000000000000000000001415191936001040014051400330200015026700250010000000000200544400000031422191291116412021015000000000000000000021000000000000158291006000760141000000340020000001049329557138017161207663341000000011020002012004012001000000009114160006916333946521246134005000000302200313184671320036191000004000000372138000100
.......................................................................................................................CGGACGGTATATGGGTTAATAT.......................................................................................................................................2213189.0031890000000200010000000035370000000001732415382123114101311718800050100000000000000000000001007216001000091220000000010600701015000000000000000000020000202136242180312412321121000000000000000000000000000000000811782831011256810000233200200000014241017102111210000000000060000000040100000000000000303000321120043280432530021000000195931087521801031010001341963670212700148610020517305234100000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAA................................................................................2512617.0026170000023500010000000001000000000000021135207910610131200002500000000000000000000000197602340000000406200000000111015120010000000000000000000880390091100401313010010000000000000000000000000000000011165600010005000001927000000000110014194156801725441644240000100000030000000040000000000000000000002687112822803900000000017300026194110000005133700000000000000713210000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGC...................................................................................2212156.00215600000000000000000000440210000000001520818162291507496522711611232100000000000000000000000000001349600000005000000020000041000207002000000001300001915208300071147641005110813220000000000001000000000000000000032220001010000005100000000021012628163120193873000000000108020000003050010000000000051000129474711167222070010000001300000159176911000000021000000000000002301000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAA..................................................................................2211910.00191000000003100000000000021220000000000000001000103001102000020000000000000000000000001110375000000020210000000000100610020000000000000000003623000310021100021340000000000001100000000000100000003150000003000000120000000001101135448380215921311271001100000000000000010100000000000000700001917716932820136187001000000120000051915000000789001300500000000212000000
...........................................................................................................................................................................TATTGCACATTCACCGGCC......................................................................................1911209.00120900000000000000000000030510000000000200220100120011010000022000000000000000000000001002100101000004000000000000011003000000000000004332450000000601101100010010100000000000000000000000020000000111140000401110000001001000000043287081323228280000000000010000020000300000000000010400000301092100000000000000002300000200000000000000000001000000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAT..................................................................................2211147.001147000000000000000000000209000000000002001200010100102000000000000000000000000000000719240000000001000100100000000100000000000000000000000110010101031100100000000000000000000000000000000000011100040100000021000000000440011047777912561711280000000000010000000010000000000000000100006561062159515800020000004100002524000000006000000100000001100000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAATC................................................................................2511126.0011260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000104877000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAC..................................................................................231788.00788000000000000000000000008000000000010101101110000931000000000000000000000000000000103554000000020100000010000000030050000000000000000003566102400211220010000000000000000000001000000000000020100001000000000100000000003005448455578817210100000000000400000100000000000000000000000023031113353170000000009010001121000000023000000000000000210000000
.......................................................................................................................CGGACGGTATATGGGTTAATATTA.....................................................................................................................................241725.00725000000000000000000004300000000000010233533150709221830000000000000000000000000000000160000000001000000000000000000000000000000000000000000000716111801250106470000000000000000000000000000000010514000004300000614000100000511010100020000000001000000000000000000000000000000000120001049836000000000410000224840000000035409800010020000000692811000000
.......................................................................................................................CGGACGGTATATGGGTTAATA........................................................................................................................................211662.0066200000001000000000000063200000000003202020001212031254000101000000000000000000000000001000000030000000000000501000070000000000000000000000000049114057036140000000000000000000000000000000035195300321130000020602200000121026002020000000000000000000000000000000000000000160000517001142124900000000019000002670001113004122410003006200001112630000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAAA.................................................................................231662.006620000000010000000000000040000000000110001001000010110000000000000000000000000000001570340000010103200000100000002100000000000000000001024114001100005001000000000000000000000000000000000000221000000000000021000000000210047212526586848830000000001000000000000000000000000000100003592256512270000000004000001520000000355000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGC.......................................................................................181639.0063900000000000000000000310010000000000000032001641402149643000530000000000000000000000000000000000000000000000000000000000000000000001020110190000030523341003202030210000000000000000000000000000000011104000004000000420000000001213001100110000000001000000010010000000000000100200008133710287170010000005000003335210100123000000100001010421000000
.............................................................................................................................................................................TTGCACATTCACCGGCCTGA...................................................................................201624.0062400000001010000000000030500000000000001100000010000010000000000000000000000000000051581600000003011000000000000130300800000000000000000000301000000010000000000000000000000000000000000000000101000000030000010000000000200046334347454253810000000000000000000000000010000000000000008763134122160000000000000001200000000302000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAG..................................................................................231606.00606000000100000000000001108000000000001110211001002225110000000000000000000000000000100010000000201000000000102002000300000000000000001002023005903111112010000000000000000000000000000000000184161000905200000120000000000100172025191921282900000000000100000000000000000000000000100015272111044134300000000020000016891030110021825000100100000024732000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGG...................................................................................221553.00553000000410000000000000003000000000000611420910031363125000000000000000000000000000051209000000000100000000002201211070000000000000000023062240003321000101020000000000000000000000000000000000000000000000000300000000000200911311638240000000000060000000030000100000000100000001139822107986900200000060000041319100000027000000000000001201000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAAA...............................................................................261528.00528000001000000000000000200000000000000120001000000000000000000000000000000000000000100020000000000000000000000001000000000000000000100004110102202002010000100000000000000000000000000000000710100010120000054000000000000022163917311512280000000000000000000000000000000000000000000820031426050000000001000001102000000118000000000000002213000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAT.................................................................................241429.004290000000100000000000000020000000000000001000100000101000000000000000000000000000003128100000001003000000000001013011200000000000002000000010003100000000100000000000000000000020000000000001522300000230140000002100000000010001718155222417340000450001000000001001010000000000000000000140219440000000009000000101100000001000000000000041113000000
.......................................................................................................................CGGACGGTATATGGGTTAATATTAA------------........................................................................................................................251426.00426000000000000000000000000000000000010111000010202100000000000000000000000000000000738190000000002000000000000000100000000000000000000000000000518202031019400000000000000000000000000000000013012200112000000210000000000100000100000000000000000000000000000000000000000000000212004190600000000068100027280000000014337600000010000000161410000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTG....................................................................................201363.0036300000000000000000000001600000000007000000020000100400000000000000000000000000000000000000000030010000000000200000010000000000000010230000000026010210000400000000000000000000000000000000000100000010000000000000000010021130111818287330000000010000000000000100000000000000100002315211352220020000000000002903000000511000000400000000201000000
.......................................................................................................................CGGACGGTATATGGGTTAAT.........................................................................................................................................201273.002730000000000000000000000090000000000140020002000010110120000000000000000000000000000000020000000400000001000001000000000000000000000000000000000009030010009000000000000000000000000000000000541421001104000000000001000001427000010000000000000000000000010000000000000100110000170031318002000000100100051300115600191112000200900000001441000000
........................................................................................................................GGACGGTATATGGGTTAATATT......................................................................................................................................221264.00264000000000000000000000200000000000000200023030421610430000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000020260402100000000000000000000000000000000010100000000000001000000000230320002000000000000000000000000000000000000000010000315004232130000000007000008330101010061646000200800000002321000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGATT.................................................................................241182.001820000000000000000000001010000000000000101000000000000000000000000000000000000000000162100000000101000000000000000001000000000000000000000000011101000200000000000000000000000000000000000001100300003030000000100000000001001519141010151416000000000001000000000000000000000010010000030012010000000003100000000000000000000000000000000100000000
......................................................................................................................TCGGACGGTATATGGGTTAATAT.......................................................................................................................................231173.001730000000000000000000000000000000000001201000001100000000000000000000000000000000001080300000000000000000000000000000000000000000000000000000001901000000131000000000000000000000000000000000102000001000000010000000000000224041000000000000010000000000000000000000000000003150011511200200000019100004110000000001213000400110000002111000000
..........................................................................................................................................................................ATATTGCACATTCACCGGCCTGA...................................................................................231169.001690000001000000000000000010000000000002120000001000000000000000000000000000000000001153700000000000000000000000002000000000000000000000010200000000000000000000000000000000000000000000000000001000000000000000000000000001159121514101022000000000000000000001000000000000000000000010013050000000003000001300000000901000000000000000101000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAAAA................................................................................241140.001400000010000000000000000000000000000000000000000001000000000000000000000000000000000000100000000000000000000000000000000000000000000000301000001000010000000000000000000000000000000000000000000000000000000000000000000000671121321151400000000000000000000000000000000000000000011315110040000000000000000402000000100000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGTT..................................................................................231131.001310000000000000000000000070000000000000000001000000000000000000000000000000000000000140000000000010000002000000000001000000000000000000000000011000100000000000000000000000000000000000000003001400001004000000000000000000000022111626000000000000000001000000000000000000010000021003050000000000000000000001000000000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAG.................................................................................241129.001290000000000010000000000000000000000000000000002001100000000000000000000000000000002002100000000000000000000201000001000000000000000000000000104000110100003000000000000000000000000000000008110000000000000010000000000000572247510000000000000000000000000000000000000000000253459260000000004000000103100000010000000000000010310000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAC.................................................................................241128.001280000000000000000000000000000000000001200020000002020000000000000000000000000000002800300000002000000000000100000000000000000000000000000050000000010000000000000000000000000000000000000000100000000000000110000000000000594968317000060000000000000000000000000000000000000161312110000000003000001220000000000000000000000000102000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAC..................................................................................221127.0012700000000000000000000000200000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010100000000000000000000000000000000000000000000000000200000000000000001008561215108100000000000000000000000000000000000000100002817213050000000000000000001000000201000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAT................................................................................251119.0011900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000010000100000000000000000000000000000000130000000000000000000000000000000000000000000035010000011050000002000000000000001403210312000000000000000000000000000000000000000000120022010000000003010000000000000000000000000000010000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTT....................................................................................211118.0011800000000000000000000010240000000000000010041110001000000000000000000000000000000003100100100002002000000000000000002000000000000000000000000000000000110000000000000000001000000000000000005040000101000000000000000000200017332128000000001004000000002000000000000000000000010001020000000002000011010000000000000000100000000210000000
.......................................................................................................................CGGACGGTATATGGGTTAATATAA.....................................................................................................................................241115.001150000000000000000000000000000000000000100010000010000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000004062000100000000000000000000000000000000000001022000003000000230000000001000000000000000000000000000000000000000000000000000001500010000000000001000001250000000012621000000000000002233000000
...............................................................................................................................................................................GCACATTCACCGGCCTGA...................................................................................181108.00108000000000000000000000100000000000000000200000000010100000000000000000000000000000200110000000000100000000000000100000000000000000000000002003040012000100100000000000000000000000000000000120000000000000001000000000510001711000000000000000000000000000000000000000001000119012210490010000000000000001000000102000000000000000000000000
.......................................................................................................................CGGACGGTATATGGGTTAA..........................................................................................................................................191103.00103000000000000000000000001000000000000000000100100000100000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000002000000000000000000010000000000000000010110100209000000000013000002213000100020000000000000000000000000000000000000000000200240400100000020100203001011001711000100100000000020000000
..............................................................................................................................................................................TGCACATTCACCGGCCTGA...................................................................................19196.00960000000000000000000000020000000000000000001000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000100000000000000232213140000000000000000000000000000000000000000004391519070000000001000000300000000001000000000000000000000000
.......................................................................................................................CGGACGGTATATGGGTTAATAA.......................................................................................................................................22191.009100000000000000000000000200000000001000000000000000110000000000000000000000000000010000000000010100000000300000000000000000000000000000000000013001000000220000000000000000000000000000000010105000101400000000000000000001000000000000000000000000000000000000000000000000000020001140000000005000002100101300434000000000000000331000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTA....................................................................................21189.00890000000400020000000000014000000000000000100000001000000000000000000000000000000000101020000000100000000000002000100900000000000000000000000000203100000000000000000000000000000000000000000300000000000000000000000000000033414432000000000000000000000000000000000000010000430003020000000000000000010000000020000000000000000000000100
.......................................................................................................................CGGACGGTATATGGGTTAATATAAA------------........................................................................................................................25184.008400000000000000000000000000000000000000021000010010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000010000000003000000000000000000000000000000000000000000000000000400000000000000000110100000000000000000000000000000000000000000010000401000000000200004020000100061019000000000000003527000000
.......................................................................................................................CGGACGGTATATGGGTTA...........................................................................................................................................18176.007600000000000000000000000000000000000020000010100000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000020100000108000000000011001002121000000000000000000000000000010000000000000100000001000033200000000000000023001001001901000000000000010000000000
.......................................................................................................................CGGACGGTATATGGGTTAATATTT.....................................................................................................................................24175.00750000000000000000000000000000000000000000011000011020000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001103100200000000000000000000000000000000001001000000000000010000000001100200010120000000000000000000000000000000000000000000300190500000000030000003000000001217000100100000000011000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTTT...................................................................................22171.0071000000000001000000000006000000000001100112000000000000000000000000000000000000000201020000000002000000000000000000000000000000000000000000001200100000000000000000000000000000000000000000002000000000000000000000000000027473527000000002001000000000000000000000000000000010100010000000000000000001010000000000000000000000000000000
..........................................................................................................................................................................ATATTGCACATTCACCGGCCTG....................................................................................22170.0070000000000000000000000000000000000001000000000000002000000000000000000000000000000400130000000001000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000001000000000000017558523000000000000000000000000000000000000000000010001020000000002000011101000000012000000000000001410000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGT...................................................................................21170.00700000000000000000000000000000000000000000030000000001000000000000000000000000000000000000000001000000000000000000000000000000000000000000030000000031000000000000000000000000000000000000004010000100000000000000000000000151401230000000000000000000000000000000000000000001304040500000000000000000010000001610000000000000000000000000
.......................................................................................................................CGGACGGTATATGGGTTAATAAA......................................................................................................................................23167.00670000000000000000000000000000000000010000000000000000000000000000000000000000000000200000000000010000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000070000008000000010000000000000000000000000000000000000000000000000000000000000000200030100000000050000213000011004411000000000000000201000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAG..................................................................................22161.00610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100110041230000000000000000000000000000000000000000000413311390000000000010000002000000025000000000000001102000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTC....................................................................................21156.0056000000000000000000000002000000000000000002000000111110000000000000000000000000000010000000000000000000000000000000000000000000000000000000001011010010001000000000000000000000000000000000000100000000000100000000000001031121212000000000001000000001000000000000000000000001104120000000000000004052010000000000000000000000100000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGATC.................................................................................24149.00490000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000132104420000212000000000000000000000000000000000000000112030000000000000000000000000000000000000000000000000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAAT.................................................................................23148.0048000000000000000000000003000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010100010000000000000000000000044213023000001000000000000000000000000000000000000032402040000000000000001101000000001000000000000010000000000
.............................................................................................................................................................................TTGCACATTCACCGGCCTGAA..................................................................................21144.0044000000000000000000000002000000000000000000000000000000000000000000000000000000000000010000000100100000000001010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032639252000000000000000000000000000000000000000000020000110000000000000000000000000000000000000000000000000000
......................................................................................................................TCGGACGGTATATGGGTTAAT.........................................................................................................................................21138.0038000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000300000000000000000000100000000000000000000000000000000000000000000020000070004020000000004110001300000000052000000100000000000000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAAAAA...............................................................................25137.0037000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000002000000000000000000000000000000010000000000000000000000000000000000000000000000000020421534000000000000000000000000000000000000000000110205000000000000000000000000000120000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTTC...................................................................................22137.0037000000000000000000000000000000000001210001200000041030000000000000000000000000000000100000000000000000000000000000000000000000000000000002000000000000000100000000000000000000000000000000000000000000000000000000000000001000000000010000002000000000000000000000000010000020100020000000000000003410000000000000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAGT.................................................................................24135.0035000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000614000010100000000000000000000001013102000000000000000000000000000000000000000000010110210000000000000000011001000001000000100000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGACT.................................................................................24135.0035000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000023220033000000000000000000000000000000000000000000010404020000000002000000000100000000000000000000000000000000
.......................................................................................................................CGGACGGTATATGGGTTAATATC......................................................................................................................................23133.0033000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000000000000000010014020000000002000002800000000214000000100000000001000000
........................................................................................................................GGACGGTATATGGGTTAATAT.......................................................................................................................................21132.0032000000000000000000000000000000000001100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000120011110010000002000001100000000338000000000000000001000000
.............................................................................................................................................................................TTGCACATTCACCGGCCTG....................................................................................19132.0032000000000000000000000000000000000000000000000000000100000000000000000000000000000000210000000101100000000000001100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000002211505000000000000000000000000000000000000000000020001020000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGTTT.................................................................................24129.00290000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001211000020100000000000000000000007010111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAC................................................................................25129.0029000000000000000000000000000000000000100000200000000000000000000000000000000000000000010000000000000000000000000000000000000000000000100100000100000000000000000000000000000000000000000000000000000000000000000000000000032104312000000000000000000000000000000000000000000110001000000000000000001011000000000000000000000000000000000
............................................................................................................................................................................ATTGCACATTCACCGGCC......................................................................................18128.00280000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000181300000000000000000000000000000000000000000000000000000000000000000000000000000000000000211000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGC...................................................................................21128.0028000000000000000000000000000000000000000000100010100000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000010001000001100000000000000100000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000060105000000000000000004000000000000000000000000000000000000
droSim2
TTACTTTAAAAAGAATCATCATTGAGCAAAGTAATTAGTTTTTT---------------TCCTTGCAATAGGCGGCAAGACAGTGAAAAATCGAAATT-TCTAGATC------ATTTTTCGGACGGTATATGAGTCAATATTTTT-----------TTTTT--TTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAGCATCGAA------------------------------------------------------AAAGAASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGA...................................................................................2211148603.0011486031181798276671188328123080292899983475341617981518543815121664001
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAA..................................................................................231134585.00134585423122722356213461030756453312039349321131189000
.......................................................................................................................CGGACGGTATATGAGTCAATATT......................................................................................................................................23139166.003916604731891223897048391951955553499815561174000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAA.................................................................................24119190.001919016415284555331410112381056090506917366000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTG....................................................................................21111653.0011653177643068129100185990514869031256443002351010
.......................................................................................................................CGGACGGTATATGAGTCAATAT.......................................................................................................................................2219917.009917014951057011102394622391875350231712590000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGA...................................................................................2119758.00975811214878171272022582808154659731522000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGG...................................................................................2217660.00766025451681900057591636331901000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAA................................................................................2514575.0045750377112405003832035141097269000
.......................................................................................................................CGGACGGTATATGAGTCAATATTAAA-----------........................................................................................................................2614150.00415000910006255681924943452195000
.......................................................................................................................CGGACGGTATATGAGTCAATATTAA....................................................................................................................................2513366.00336600500035739915629377161613000
.......................................................................................................................CGGACGGTATATGAGTCAATA........................................................................................................................................2112729.0027290160209257481191121203531999000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAA..................................................................................2212573.002573077010706005028954696610000
...........................................................................................................................................................................TATTGCACATTCACCGGCC......................................................................................1912293.00229371511702029881519362821008000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAAA...............................................................................2611729.00172900435002232368193963094000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAT..................................................................................2311389.0013894872859001781224002216151250000
...........................................................................................................................................................................TATTGCACATTCACCGGCCT.....................................................................................2011297.00129701624418461551532851392518142550415
..........................................................................................................................................................................ATATTGCACATTCACCGGCCTGA...................................................................................2311258.00125800540039136931914811128000
.......................................................................................................................CGGACGGTATATGAGTCAATATTA.....................................................................................................................................2411040.001040001000013713931417922711716000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGT...................................................................................2211006.00100611417530051599172104216445000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGC...................................................................................221898.0089811526000312850526322700000
.......................................................................................................................CGGACGGTATATGAGTCAAT.........................................................................................................................................201796.0079602101512146201987017567000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAAA.................................................................................231427.0042702403220391815712111041000
.........................................................................................................................................................................TATATTGCACATTCACCGGCCTGA...................................................................................241376.0037601500011512582460200000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAC..................................................................................231367.00367031131200243189491432000
.......................................................................................................................CGGACGGTATATGAGT.............................................................................................................................................161349.0034900000054513322000000
.............................................................................................................................................................................TTGCACATTCACCGGCCTGA...................................................................................201321.003210035006511691373100000
...........................................................................................................................................................................TATTGCACATTCACCGGC.......................................................................................181317.00317169607912814432424100000
...............................................................................................................................................................................GCACATTCACCGGCCTGA...................................................................................181290.0029001342001625907940300000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAC.................................................................................241283.0028304142100141775290100000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAT.................................................................................241280.0028003131005963903601005000
.......................................................................................................................CGGACGGTATATGAGTCAATAA.......................................................................................................................................221212.0021200000033149402177000
..........................................................................................................................................................................ATATTGCACATTCACCGGCCTGAA..................................................................................241207.00207022000352797350036000
.......................................................................................................................CGGACGGTATATGAGTC............................................................................................................................................171205.002050000003514192000000
.......................................................................................................................CGGACGGTATATGAGTCA...........................................................................................................................................181202.0020201007127311898001000
......................................................................................................................TCGGACGGTATATGAGTCAATAT.......................................................................................................................................231189.001890010503239375515014000
.......................................................................................................................CGGACGGTATATGAGTCAA..........................................................................................................................................191188.00188012010166344110050000
.......................................................................................................................CGGACGGTATATGAGTCAATT........................................................................................................................................211167.001670000000000102164000
.................................................................................................................................................................................ACATTCACCGGCCTGA...................................................................................161152.001520000001117552049000000
........................................................................................................................GGACGGTATATGAGTCAATATT......................................................................................................................................221151.0015100010003729361028001000
.......................................................................................................................CGGACGGTATATGAGTCAATATAAA....................................................................................................................................251150.00150000100181082336000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAG..................................................................................231149.001490434400222133213502000
.......................................................................................................................CGGACGGTATATGAGTCAATATAA.....................................................................................................................................241129.001290113001612482612109000
..................................................................................................................................................................................CATTCACCGGCCTGA...................................................................................151119.00119000000213730238000000
..............................................................................................................................................................................TGCACATTCACCGGCCTGA...................................................................................191118.00118003100153239187300000
............................................................................................................................................................................ATTGCACATTCACCGGCCTG....................................................................................201113.00113111305205748411124000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAAAA................................................................................241108.0010800590022544211100000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAT..................................................................................221106.001060313200131238220102000
.......................................................................................................................CGGACGGTATATGAGTCAATATTT.....................................................................................................................................241104.001040100100178211651124000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAG.................................................................................24190.0090012310011728140320000
.......................................................................................................................CGGACGGTATATGAGTCAATATA......................................................................................................................................23188.008800250012895801326000
.............................................................................................................................GTATATGAGTCAATATT......................................................................................................................................17186.0086000000000086000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTT....................................................................................21185.00850344000000001037000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGATT.................................................................................24184.008405700019191971115000
...........................................................................................................................................................................TATTGCACATTCACCGG........................................................................................17175.0075000000242311106001000
.........................................................................................................................................................................TATATTGCACATTCACCGGCCTGAA..................................................................................25171.0071000000231721100000000
................................................................................................................................................................................CACATTCACCGGCCTGA...................................................................................17171.007100000013834142000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAC................................................................................25169.0069001400010722160000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGTT..................................................................................23162.00620310000222200023000
.............................................................................................................................................................................TTGCACATTCACCGGCCTGAA..................................................................................21159.005900020012181980000000
...............................................................................................................................ATATGAGTCAATATT......................................................................................................................................15157.0057000000100056000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAAAAA...............................................................................25151.0051000400872390000000
.......................................................................................................................CGGACGGTATATGAGTCAATATTTAA-----------........................................................................................................................26148.00480000009622101000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAT................................................................................25148.00480033005518120101000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGG...................................................................................21146.0046033300031211200000
.......................................................................................................................CGGACGGTATATGAGTCAATATTTAA-----------A.......................................................................................................................27145.004500000010816110000000
...........................................................................................................................................................................TATTGCACATTCACCGGCTGA....................................................................................21535.40177001000545046250010000
............................................................................................................................................................................ATTGCACATTCACCGGCC......................................................................................18134.00340211016110003000000
.......................................................................................................................CGGACGGTATATGAGTCAATAAA......................................................................................................................................23132.0032000000211271009000
...........................................................................................................................................................................TATTGCACATTCACCGGCCGA....................................................................................21131.0031000000551470000000
..........................................................................................................................................................................ATATTGCACATTCACCGGCCTGAAA.................................................................................25130.0030001000531180002000
.......................................................................................................................CGGACGGTATATGAG..............................................................................................................................................15130.0030000000154317000000
........................................................................................................................GGACGGTATATGAGTCAATAT.......................................................................................................................................21130.003000000023785014000
............................................................................................................................................................................ATTGCACATTCACCGGCCT.....................................................................................19129.0029000015000527000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTA....................................................................................21129.002900010077240026000
..............................................................................................................................TATATGAGTCAATATT......................................................................................................................................16126.0026000000201023000000
..........................................................................................................................................................................ATATTGCACATTCACCGGCCTG....................................................................................22125.0025002000037200110000
...........................................................................................................................................................................TATTGCACATTCACCG.........................................................................................16123.0023000000300317000000
............................................................................................................................GGTATATGAGTCAATATT......................................................................................................................................18122.0022000000100021000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGAAT.................................................................................23121.002100000077421000000
.......................................................................................................................CGGACGGTATATGAGTCAAA.........................................................................................................................................20121.0021000000101110116000
..................................................................................................................................................................................CATTCACCGGCCTGAA..................................................................................16120.0020000000421220000000
...............................................................................................................................................................................GCACATTCACCGGCCTGAA..................................................................................19119.001900100003843000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTGAAAG................................................................................25118.001800100034721000000
........................................................................................................................GGACGGTATATGAGTCAATATTAA....................................................................................................................................24118.001800010030941000000
...............................................................................................................................................................................GCACATTCACCGGCCTGAAA.................................................................................20118.001800100000881000000
.......................................................................................................................CGGACGGTATATGAGTCAATATC......................................................................................................................................23117.001700100051117010000
........................................................................................................................GGACGGTATATGAGTCAATATTAAA-----------........................................................................................................................25117.001700020041550000000
.......................................................................................................................CGGACGGTATATGAGTCAATATTC.....................................................................................................................................24117.001700100012634000000
............................................................................................................................................................................ATTGCACATTCACCGGCCTGT...................................................................................21117.0017031000100100011000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTTG...................................................................................22116.0016001500000000100000
...................................................................................................................................................................................ATTCACCGGCCTGAA..................................................................................15115.001500000022614000000
.........................................................................................................................................................................TATATTGCACATTCACCGGCCTG....................................................................................23115.001500700015200000000
...........................................................................................................................................................................TATTGCACATTCACCGGCCTTT...................................................................................22114.001401110010010009000
......................................................................................................................TCGGACGGTATATGAGTCAATA........................................................................................................................................22114.001400002024130002000
.............................................................................................................................GTATATGAGTCAATAT.......................................................................................................................................16114.0014000000003011000000
..............................................................................................................................................................................TGCACATTCACCGGCCTGAA..................................................................................20113.001300000021820000000
.................................................................................................................................................................................ACATTCACCGGCCTGAA..................................................................................17113.001300000031810000000
droSec2
TTAGCATCGAAAAAGAAAAATA------------AAA--------GT--GCTT-----------G----------------------------CAAAA-ACATAAAC------ATTTGCAGGACGGGTCGTGTGTCAGTGTATTT-----------AC-TT--CTTAACTATATTGCACACTTCCCGGCCTTTAAA--------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTT...................................................................................22112571.0012571121561034956
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTT....................................................................................2112018.0020181803518624
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTT...................................................................................211731.00731731000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTA..................................................................................231446.004464212203
...........................................................................................................................................................................TATTGCACACTTCCCGGCCT.....................................................................................201194.001941197653
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTAA.................................................................................241154.001541260262
............................................................................................................................................................................ATTGCACACTTCCCGGCCTT....................................................................................20182.008281010
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTT..................................................................................23180.008074240
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTAAA--------------------------------------------------------------------------------25177.007770070
.......................................................................................................................AGGACGGGTCGTGTGTCAGTGTA......................................................................................................................................23171.007160524
.............................................................................................................................................................................TTGCACACTTCCCGGCCTTT...................................................................................20148.004846020
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTA...................................................................................22143.004331075
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTTA..................................................................................22124.002424000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTG..................................................................................23121.002121000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTG....................................................................................21115.001514010
.......................................................................................................................AGGACGGGTCGTGTGTCAGTGT.......................................................................................................................................22115.001512111
..........................................................................................................................................................................ATATTGCACACTTCCCGGCCTTT...................................................................................23113.001313000
...........................................................................................................................................................................TATTGCACACTTCCCGGCC......................................................................................1918.0086020
............................................................................................................................................................................ATTGCACACTTCCCGGCCT.....................................................................................1918.0088000
.......................................................................................................................AGGACGGGTCGTGTGTCAGTG........................................................................................................................................2117.0076001
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTC...................................................................................2217.0076001
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTC..................................................................................2317.0077000
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTTT..................................................................................2216.0066000
...............................................................................................................................................................................GCACACTTCCCGGCCTTT...................................................................................1816.0066000
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTTAA.................................................................................2315.0054010
..............................................................................................................................................................................TGCACACTTCCCGGCCTTT...................................................................................1915.0055000
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTTAAA--------------------------------------------------------------------------------2414.0044000
........................................................................................................................GGACGGGTCGTGTGTCAGTGTA......................................................................................................................................2214.0044000
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTA...................................................................................2114.0044000
........................................................................................................................GGACGGGTCGTGTGTCAGTGT.......................................................................................................................................2113.0033000
.............................................................................................................................................................................TTGCACACTTCCCGGCCTT....................................................................................1913.0032010
.......................................................................................................................AGGACGGGTCGTGTGTCAGT.........................................................................................................................................2013.0033000
..........................................................................................................................................................................ATATTGCACACTTCCCGGCCTT....................................................................................2213.0033000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTA....................................................................................2113.0030030
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTG...................................................................................2113.0033000
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTC...................................................................................2113.0033000
...........................................................................................................................................................................TATTGCACACTTCCCGGC.......................................................................................1812.0022000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTAG.................................................................................2412.0021010
..............................................................................................................................................................................TGCACACTTCCCGGCCTT....................................................................................1811.0011000
.......................................................................................................................AGGACGGGTCGTGTGTCAGTGTAAAA-----------........................................................................................................................2611.0010010
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTCTG--------------------------------------------------------------------------------2511.0011000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTGGC--------------------------------------------------------------------------------2511.0011000
............................................................................................................................................................................ATTGCACACTTCCCGGCCTTTC..................................................................................2211.0011000
.............................................................................................................................................................................TTGCACACTTCCCGGCCTTTA..................................................................................2111.0010010
.......................................................................................................................AGGACGGGTCGTGTGTCAGTGTT......................................................................................................................................2311.0010010
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTAT.................................................................................2411.0011000
.............................................................................................................................................................................TTGCACACTTCCCGGCCTTTAAA--------------------------------------------------------------------------------2311.0011000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTTAC.................................................................................2411.0011000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCC.....................................................................................2011.0010010
...........................................................................................................................................................................TATTGCACACTTCCCGGCCTTAT..................................................................................2311.0011000
...........................................................................................................................................................................TATTGCACACTTCCCGGCCA.....................................................................................2011.0010010
..........................................................................................................................ACGGGTCGTGTGTCAGTGTAT.....................................................................................................................................2111.0011000
droYak3
CGAA-------------------------------AA--------GT--GCTT-----------G----------------------------CAAAT-ACACAAAC------ATTTGCAGGACGGGTCGTGTGGCAGTGTATTG-----------AT-TT--CTTAGCTATATTGCACACTTCCCGCCCTTTAAA--------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTT...................................................................................22130388.0030388019757101714463920000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTT...................................................................................2112170.0021700201915100000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTT....................................................................................2111594.0015940907611740020000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTC...................................................................................2211155.00115506114900000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTA..................................................................................231522.005220387125100000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTAA.................................................................................241337.0033702626870000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTT..................................................................................231256.0025611807050000000
.............................................................................................................................................................................TTGCACACTTCCCGCCCTTT...................................................................................201174.0017401344000000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTAAA--------------------------------------------------------------------------------251155.0015501441010000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTC....................................................................................211107.001070010700000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTT....................................................................................201106.001060931300000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCT.....................................................................................20199.00990524520000000
.......................................................................................................................AGGACGGGTCGTGTGGCAGTGTA......................................................................................................................................23186.0086084200000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTG...................................................................................22152.0052052000000000
..........................................................................................................................................................................ATATTGCACACTTCCCGCCCTTT...................................................................................23149.0049047200000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTA...................................................................................22145.00450311310000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTG..................................................................................23141.0041038300000000
..............................................................................................................................................................................TGCACACTTCCCGCCCTTT...................................................................................19140.00400291100000000
...............................................................................................................................................................................GCACACTTCCCGCCCTTT...................................................................................18137.0037030700000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTTA..................................................................................22134.0034033100000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTTAA.................................................................................23131.0031028300000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTAT.................................................................................24126.0026024110000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTTT..................................................................................22125.0025022300000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTC..................................................................................23124.00240141000000000
.......................................................................................................................AGGACGGGTCGTGTGGCAGTGT.......................................................................................................................................22120.0020014500010000
...........................................................................................................................................................................TATTGCACACTTCCCGCCC......................................................................................19119.0019010810000000
.......................................................................................................................AGGACGGGTCGTGTGGCAGTG........................................................................................................................................21115.001509310020000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCC.....................................................................................20112.0012101100000000
........................................................................................................................GGACGGGTCGTGTGGCAGTGTA......................................................................................................................................22112.0012012000000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTTAAA--------------------------------------------------------------------------------24112.0012012000000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTTT.................................................................................24110.001009100000000
.............................................................................................................................................................................TTGCACACTTCCCGCCCTT....................................................................................19110.001009100000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTGG.................................................................................2419.00909000000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTAC.................................................................................2419.00907200000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTC...................................................................................2119.00901800000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTTAT.................................................................................2316.00606000000000
...........................................................................................................................................................................TATTGCACACTTCCCGCC.......................................................................................1816.00604200000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTTG..................................................................................2215.00505000000000
.......................................................................................................................AGGACGGGTCGTGTGGCAGTGTAAA....................................................................................................................................2515.00502000000003
.......................................................................................................................AGGACGGGTCGTGTGGCAGTGC.......................................................................................................................................2215.00500500000000
.............................................................................................................................................................................TTGCACACTTCCCGCCCTTC...................................................................................2015.00500500000000
.............................................................................................................................................................................TTGCACACTTCCCGCCCTTTAA.................................................................................2214.00404000000000
.............................................................................................................................................................................TTGCACACTTCCCGCCCTTTA..................................................................................2114.00403100000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTAG.................................................................................2414.00404000000000
........................................................................................................................GGACGGGTCGTGTGGCAGTGT.......................................................................................................................................2114.00404000000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTGT.................................................................................2414.00404000000000
.............................................................................................................................................................................TTGCACACTTCCCGCCCTTTT..................................................................................2113.00302100000000
..............................................................................................................................................................................TGCACACTTCCCGCCCTT....................................................................................1813.00302100000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTTG.................................................................................2413.00303000000000
..........................................................................................................................................................................ATATTGCACACTTCCCGCCCTT....................................................................................2213.00303000000000
.......................................................................................................................AGGACGGGTCGTGTGGCAGTGTAA.....................................................................................................................................2413.00303000000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTCT.................................................................................2413.00303000000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCT.....................................................................................1912.00201100000000
............................................................................................................................................................................ATTGCACACTTCCCGCCCTTTC..................................................................................2212.00202000000000
.............................................................................................................................................................................TTGCACACTTCCCGCCCT.....................................................................................1812.00202000000000
...............................................................................................................................................................................GCACACTTCCCGCCCTTTT..................................................................................1912.00201100000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTG....................................................................................2112.00201100000000
..........................................................................................................................................................................ATATTGCACACTTCCCGCCCTTTAAA--------------------------------------------------------------------------------2612.00202000000000
..........................................................................................................................................................................ATATTGCACACTTCCCGCCCTTTA..................................................................................2412.00202000000000
.............................................................................................................................................................................TTGCACACTTCCCGCCCTTTAAA--------------------------------------------------------------------------------2312.00202000000000
..............................................................................................................................................................................TGCACACTTCCCGCCCTTTA..................................................................................2012.00202000000000
.......................................................................................................................AGGACGGGTCGTGTGGCAGT.........................................................................................................................................2012.00220000000000
...........................................................................................................................................................................TATTGCACACTTCCCGCCCTTTTC.................................................................................2412.00202000000000
.......................................................................................................................AGGACGGGTCGTGTGGCAGTGTAT.....................................................................................................................................2412.00202000000000

Generated: 10/20/2015 at 07:35 PM