ID:

dmo_2062

 Coordinate:

scaffold_6540:25700196-25700346 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dmoj\GI22413-cds]; exon [dmoj_GLEANR_7632:8]; intron [Dmoj\GI22413-in]

Repeatable elements

NameClassFamilyStrand
(TA)nSimple_repeatSimple_repeat+
Homo6DNAhAT-Pegasus+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTTCTCCCTGTTACATACATTTCAACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGTTCAGGGTATAAAAATGTATAATATTTTTCGGATAAATATTAAATCTATATATATCTATATATATATATATAATACTTTAAAATAGCAAATTTCATGCCTTTAAATCTATTTCACTCCCCCATTTTCTTGCTTAAACAGCTCCCTGGCTCACATGCCGCTGCACATTGATCGGAATTTGATTGATGCGC
**************************************************...(((((((((((.((((((((((..(((....((((((..((.....(((((.((.((((((((....)))))))).)).)))))))..)))))))))..))).))))))).))..............)))))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
..........................AAAACCATTATACCCTGATTTCC.......................................................................................................................................................................................................... 23 0 20 0.05 1 1

Anti-sense strand reads

GAAGAGGGACAATGTATGTAAAGTTGTTTTGGTAATATGGGACTAAAGGGTAACTTTTACCCAAGTCCCATATTTTTACATATTATAAAAAGCCTATTTATAATTTAGATATATATAGATATATATATATATATTATGAAATTTTATCGTTTAAAGTACGGAAATTTAGATAAAGTGAGGGGGTAAAAGAACGAATTTGTCGAGGGACCGAGTGTACGGCGACGTGTAACTAGCCTTAAACTAACTACGCG
**************************************************...(((((((((((.((((((((((..(((....((((((..((.....(((((.((.((((((((....)))))))).)).)))))))..)))))))))..))).))))))).))..............)))))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body
..........................TTTTGGTAATATGGGACTAAAGGGT........................................................................................................................................................................................................ 25 0 20 4.40 88 88 0
....................................................................................................................................................................TCCAGATAAAGTGAGGGG..................................................................... 18 2 3 1.33 4 4 0
.................................................................................................................................................................AAGTCCAGATAAAGTGAGGGG..................................................................... 21 3 4 0.75 3 3 0
.................................................................................................................................................................AAGTCCAGATAAAGTGAGGG...................................................................... 20 3 13 0.54 7 6 1
..................................................................................................................................................................AGTCCAGATAAAGTGAGGG...................................................................... 19 3 20 0.50 10 10 0
....................................................................................................................................................................TCCAGATAAAGTGAGGGGA.................................................................... 19 3 17 0.18 3 2 1
..................................................................................................................................................................AGTCCAGATAAAGTGAGGGG..................................................................... 20 3 6 0.17 1 1 0
...........ATGTATGTAAAGTTGTTTTGG........................................................................................................................................................................................................................... 21 0 20 0.15 3 3 0
............................TTGGTAATATGGGACTAAAGG.......................................................................................................................................................................................................... 21 0 20 0.10 2 2 0
............................TTGGTAATATGGGACTAA............................................................................................................................................................................................................. 18 0 20 0.10 2 2 0
..................................ATATGGGACTAAAGGGTAAC..................................................................................................................................................................................................... 20 0 20 0.05 1 1 0
...GAGGGGCAATGTATGTGAAGT................................................................................................................................................................................................................................... 21 2 20 0.05 1 0 1
..AGAGGGACAATGTATGTAAAGTT.................................................................................................................................................................................................................................. 23 0 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:25700146-25700396 - dmo_2062 CTTCTCCCTGTTACATACATTTC-------AACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGTTCAGGGTATAAAAA-------TGTATAATAT------------------------------------------------TT------------------------------------TTCG-----G------------------------------------------ATAA-------ATATTAAATC-------------------------------TATATATATCT-------------------ATATATATATATATAATA------------------------------------------------------------------------------------------------CTTTAAA---------------------------------------AT-----------------AG---------------C------------------------------------------------------------------------------------------------------------------AAATTTCATGCC-------TTTAAAT----CTATTTCACT----------------------------------------C------------------------CCC-------CA--------------------------------------------TTTT---------------------------------------CTTGCTTAAACAGCTCCCTGGCTCACATGCCGCT----------GCAC-ATTGATCGG----AATTT---------GATTGAT-----------GCGC
droVir3 scaffold_13324:1015600-1015851 - CCTCTGCCTGTTACATACATTTGAATTTCGCACAAATACAATATACCCTTATACC-CATTTTTAATGGGTTCAGGGTAT-----------------------------------------AAAAATTAT-------------TTGCCAA-ACTTCTTTAAT-GAAT---------------------TTAG-----A------------------------------------------ATAA-------ACAAGAAAT---------------------------------------------------------------------------------------------------------------------------------GATATAG-------ATTT------------------------------------------GTAAAATTTATATAATTTTATTAATCAA-----------------------------------------A------------------------------------------------------------------------------------------------------------------TAAAT-------TTTGGTATTCAAATAGTTCTTCCTCACT----------ATCT----------------------------------------------------GATAATATTC-TTG-----GTTGA----------------------------------------------------------GCTTCT----TAAT------------------------TCAAATAATGAT----------GTCT-AT---------------------------------------------TG
droGri2 scaffold_15203:2797833-2798040 - CTTCTGCATATTACATACTTGTG-------CACAAAACTATTACACTCTCTTTGCCCATTTTCTATGGGTTCAAGGTATAAAAGAAG------TAAAGCGA------------------------------------------------TT------------------------------------CTCG-----T-----------------------------------GTAAATT--------------GTAGTGC--------------------------------TTATATGTATATTCTTTACTATG------------------ATAATACTTCATC-----------------------------------------------------------------------------------------------A---------------------------------------AT-----------------TTC----ACGGAAAATA-------------------------------------------CCTGTT-----GAC----------------------------------------------------------------------------------------GTATTCCACT----------------------------------------T------------------------TTCAAA---------------------------------------------------TGC---------------------------------------CTTTC---------------------------TT----------GCAG-GCA------------------------------------------GCCC
droWil2 scf2_1100000004949:834280-834526 - CTTCTGCCTGTTACATACATTTT-------GGCGACTTTAATATACCATTTCACC-C------TATGGGTGTATGGTATAAAAAGAG------AAAAAC-C------------------------------------------------TA------------------------------------ATAG-----G------------------------------------------A---------AAGCTTAGA--TTGCTAGCTACCGATCCCTTCGACTCTAACATATACAT-------------------GTAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------ATA----ATGGAAAATG-------------------------------------------TATGTA-----TACTAAA--------------------------------------------------TACA------------TATATCCCT-----------------------------------CAAAAAGCATTTCATT--------CTCCTTATTCTTTG----------------------------------------------------------------------------------------------CGC-----------------------------------CCATATACTGTT----------GTCT-ATTA----------AATT---------CATCGAT------------GTG
dp5 XR_group6:2485059-2485282 + CTTCTGGGTGTTACACACATCCACTTC---CACCAGACAG-------------------------------AAGGGCTC----------------A-----AGATGCCGATCAAGAATATAT------------------------------------CCA-TACAT----ATTGATTGTTCCTTTGG-----CTTGCCAAATCT-GGGAGAAGTATTATTACTCCATAGAA----ATT--------------TTTG-------------------------------------------------------------T------GTATAAATACAGTT-------------------------------------------------------------------------------------------------------------------------------------------------CCAAGAAACTTTTCACACAA-----------------------------------------------------------------------------------------------------------------------------------------------------TAAAT----CTATTTTAGTCTTCCTA----------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTA---------------------------CCTCATATACAGGTGCAT-ATTT-------------------------------------------AT
droPer2 scaffold_52:416779-417009 - CTTCTGGACGTTACACACATCCATTTTCACCACAAATCTAATATACCCCAATACT-CAT----TTTGAGTATCGGGTAT-----------------------------------------AAAAACCCT-------------C----------------------------------------------AACATC-----------------------------------------------T---------------------------------------------------------------------------------------------------------------ACTATCTATCACC------AATCGACTAATGAATGTGTCCAGCTA---TT-TCTATTATATGGG---------------------------------------------------------------AT----------TCTGCAGAGAATGG----------C-----------------------------------TTTATAT--------------------------------------------------------------------------------------------------------CTTTCA-------------TCTGCCTGACA----------C------TT--TG----------------------------------------GCTCG----------------------------------------------------------T-----------------------------------------GCCCTGCC----------CCGT-GTCACTTGAAATTTTTTT---------T------------------ATC
droAna3 scaffold_13335:694062-694284 + CTTCACTGCGTTGCACACTTTTG-------ACCAAAATTATAATACCCTCTGC------------------AAGGGTAT-----------------------------------------AAAAATACT-----------------------------TTT-AACAA----A--------------------------------------------------------------------TAA-------ATAATAAAT---------------------------------------------------------------------------------------------------------------------------------AATTTAA-------ATTC------------------------------------------AAATAAAATATAA-------------------AATCAAAAAAAAT------------AA----------C------------------------------------------TATCTAGACAGACTCGAACCCCTTACACCAA---------------------------------------------------------------------------------------------GT----------ATCTGACTC------TT--TTTCTTC---------------TGTATCTCTCC-----------------------------------------------------------------------------------------------------------GTTTCAGTTTCAGTT----------TCGC-TTCGTTT------AATTT---------TA----------------ATGA
droBip1 scf7180000394967:4284-4503 - CTTCAGTGCGTTGCACACTTTTA-------AAAAA-ATAATAATACCTTC-TGC-----------------AAGGGTAT-----------------------------------------AAAAAGAGC-------------C--CCAAG-CTTCTATTTT-TAAAA----ATACAAAAGTTATTTTG-----TTAGA-------------------------------------------------------------------------------------------------TATACAT--TATATATTATA------------------ATGTTA------------------------------------------------------------------------------------------------TTACATAGTTATACAT-------------------------------------------------------------------------------------ATAATTTTGCC----------------------------AAGC--------------------------------------------------------------------------------------------T----------ATCCACTTGAAA----------C------TT------------------------TGCACA---------------------------------------------------CTC--------------------------CCTTCTTTCAT------------------------TTGC---ATGCT----------GTAT-ATAAGTC--------------------------------------GGAA
droKik1 scf7180000302412:701853-702068 + CTTCACTGCGTTGCAAACTTCTG-------ACTGAAATTATAATACCCTGC--------------------AAGGGTAT-----------------------------------------AAAAATATA-------------G-------------------------GAAATGAA---AT-TT---CTTG-----T-------------------------------------------------------------------TA--------------------------------------------------------------------------------------------------------------------------------AGATA---------------------------------------------------------------------------------------------------------------GA---------------------------------------------------------------GAATCTTTGCTACGAAA------------------------------------AATA------------TATTTTTTT---------------TAGAATTGC-------------------ATATTTTT--------ATCTATATTTTTAAAGGTTTTAAACATT-------TA-------------------------------------------------------------------------------------------------TTTCCTTA------------TATA----------AAAC-GTTGTCC-----AAACCT---------TGTTGACAATTTTCTACACATT
droFic1 scf7180000454104:1203784-1203992 + TTTCACTGCGTTGCAAACCTCTG-------GCCAAAATTATAATACCCTT-TGCT-C------TGCA-----AGGGTAT-----------------------------------------AAAAAAATC------------------------------------------------------------AACCTTAGTCAAACATT--------------------------ATAAACT--------------ATAA-------------------------------------------------------------T------ATATATATATAATA-------------------------CCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTTTGACTTTTTCGGT---TTTCTTT--------------------------------------------------------------------------------------------------------CTTG------------------------------------------------TTTTTA---------------CGTACTTTTTT---------GCTTA----------------------------------------------------------CGT-----------------------------------CAGTATTCCGTA----------AAAC-ATTGACT-----TTGTTT---------TATGAAT-----------GAGC
droEle1 scf7180000486497:705-920 + CTTAACTGCGTTGCAAACTTCTG-------ACTGAAATTATTATACCCTCTGC------------------AAGGGTAT-----------------------------------------AAAAACTCG-------------T--CGGG-------------------GCTATT---------------AAATTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCAAAAAGT-CCCAAGATA---------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------AAA------------------------------------AATA------------TATGGCATTCAAATCGGTAGATCACATT------------------------GTTTGAATTTCTCTCTC------------------------TGCAGACCACC-ATTATCGGGCTGA----------------------------------------------------------GGC-CA----TAAT------------------------TCGCGTGACGCG----------GAAA-ATTC---------GATTT---------G------------------ATT
droRho1 scf7180000760678:1415-1626 - CTTCTAGCTGTTACATACTTTTG-------CACGAATACAATATACCCTTTTACT-C------TACGAGTAACGGGTAT-----------------------------------------AAAAATTTA---------------------------------GGCGT-------------------------------------------------------------------------------------------------------------------------------ATATATAAAACGTATAATAAT------------------A------------------------------------------------------------------------------------------------------------------TAATAAAAACGAC-------------------AATTGAAAAAAAA------------AT----------TTAATTCGATACTGCGGTTTTGGCATCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCCCAATGGCTGGCCTTCACCA----------GGTC-ACTAA---AGAGTTTTTC---------GATTGGT-----------GGAC
droBia1 scf7180000298902:3124-3353 + C------CTGTTACATACTTTGT-------AATGAATCTAGTATACTCTTTTACT-T------TACAAGTAACGGTTATAAAAAATAAG--ATTTT---------------------------------------------------------------------------------------------AGTACC-----------------------------------------------TGCTAGCAAAATTAAA--TTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------TATTTAGAGGCAATCAAATT------------CGTTCTATTATAACTCTTTCTGATACTAAAGTACGT----AAAGTTCGTTCT-------TTTAAATCAATGTTATA---------------------------------------------------------------------------------------------------------------------------CATTTTTTAGATTCAATAACCTTGCT----------------------------------------------TAACATT----------GCAA-ACTAAT-----------------------------------------CG
droTak1 scf7180000415390:71275-71532 - CTTCTAGCTGTTACATACTTTTG-------CACGAATCTAATATACCCTTTTACT-C------TACGAGTAACGGGTAT-----------------------------------------AAAAATAGT-----------------------------GTT-TAAAA----ACATTCATGT---------------------------------------------------------------------------------------------------------------------------ATTTTCTTATG------------------GTATTACTCCCTCGATTCAT------TATTATGTTATTCAATTAAATTTAAAAACTAAACACATTAAAA-------------------------------------------------------------------------------------------TCTATTAAT----------------------------------TAAACATCAAGAGCTCC----------------------AACAT------------TTTTCCTTGAGTGCTCTACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATG------------------------------------------------------CGATCCTCTGCT----------GAGT-GTTGGCC-----GGGCTT---------GAT-----------------TG
droEug1 scf7180000409676:572789-572999 + CTTTTACCTGTTACATACTTTTC-------ACCGAATATAATATACCCTTTTACT-C------TACGAGTAACAGGTATAATAAACAAAACAGTGT----------------------------------------------A--CTTTCCCCTCCCTAAG-AAAT--------------------------------------------------------------------------------------------------------------------------------AGAA-------------------ACACA-------------------------TACAAT------CAATCGCATC------TAT------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGCTAGCAAGTTCGACTTCGAAAACTT--------TGTCACTC------------------------TGCTACTGCCC-TCTGTGGAGAACA-----------------------------------------------------------------------------------------------------AGCCACT----------GGAC-GGC-------------------------------------------GAT
dm3 chr2R:1532725-1532956 + CTTTTACCTATTACTTACTTTTC-------AACGAATCTAGTATATTCTTATATC------------------AAGTATATCAAACG---------------------------------------GTAAATCCATGGACACG--CTACG--------TTTAAACTTGTACATACGTA------------------------------------------------------------------------------CGCCGTTTTAATC---------------------------------------------------------------------------------------------------------------------------TTAAATCTAATT-TATATTGTACGTGGATTGGTAAGAGAGTTGTTTCAAC---------------------------------------GT-----------------AG---------------T------------------------------------------------------------------------------------------------------------------AGATATCG-----------------------ACAGC---------------------------------------------------------------------------------------------------------------------------CGCTTTTTCGATTTCAGAAACACAATT--T----G----C-----ATTGCTAAAACCGCT--------------------------------------------------------------------------------CTC
droSim2 2l:20744373-20744609 - CTTCTGCCTGTTACATACTTTTC-------AACGAATCTAGTATACCCTTTTACC-C------TACGTGTAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTGGTTTCCAAGCCAAGTGGC---AACATGTATATATAT-------------------ATATATATGTGTATATGA------------------------------------------------------------------------------------------------ATGTACATCTATATAT-------------------------------------------------------------------------------------TTAATATTGTCAGCACC----------------------AG-----------------------------------------------------------------------------------------------------------CCATTTCTTA----------C------GT----------------------------------CG--------------------------------------------TTTTACTACTTTACTACTACTACT-----------------------------------------TCAAATGCCATT----------GATCAGTTCATT-----TCGGACCATCGATGCGC----------------ATCA
droSec2 scaffold_32:156598-156817 + CTTTTACCTGTTACATACTTGGC-------AACGAATCTAGTATACCCTTTTACT-C------TACGAGTAACGCGTAT-----------------------------------------CAAAACTAT-------------T----------------------------------------------AACTTGA----------------------------------------------------------------------------------------------------------------------GAA----------------GAATTACTGCATAGGGTGTCTACAATGT---------ACAAATAAATAAATAAATAACCCAAAATAAAC-------------------------------------------------------------------------------------------TCTACAAAGAA---------------------------------------------------------------------------------------------------------------------------------------------------TCCAAAT------ATTTTC-------------------------------------GCT--A------------------------CCT-------CT--------------------------------------------TT--------------------------------CT----TTCCTG---------------------------CCTG----------GCAA-ATAGATC-----GAATTT---------GATGGAA-----------GAAT
droYak3 v2_chr2h_random_004:1081053-1081285 - CTTCTGCCTGTTACATACTTTCC-------AACGAATCTAGTATACCCTTTTACT-C------TACGAGTAACGGGTAT-----------------------------------------AAAAAAAAA-----------------------------ATTAAAATAGCAAATAAA-------------------------------------------------------------------------------AAACCTTGTTAGCT---------------------------------------------------------------------------------------------------------------------------CAAAATATAATA-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGAACCAAAACCTAGTGGAAATCATACAAGCTTAACATTTTATTTATTCGCTGTTGCTGCTCAGT------------------------ACATTGCCAAGTAACAAAAGCTGCC----------GCTT---ATTTC--------------------GAATTTC-----------GAGT
droEre2 scaffold_4784:7590857-7591091 - CTTCTGCCTGTTACATACTTTTC-------AATAAATCTAGTATACCCTTTTAAT-C------TACGAGTAACGGGTAT-----------------------------------------AATTAGTCT-------------T--CCTAGTCTTCGGAAAA-GGAT--------------------------------------------------------------------------------------------------------------------------------GGTA-------------------CATCA-------------------------ATTAAT------CAATCAGTTA------TAC------------------------ATTA------------------------------------------AGATAAG-CCTATGATTACTTTAACCAACTACAAC-----------------AGG----ATGGTATAAA-------------------------------------------CATCTG-----AACCAAACT------------CACTCCTTCGAAACACTTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAATGGGGCT----------GCAC-ACGCA----------------------------T-----------GGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
CTTCTCCCTGTTACATACATTTC-------AACAAAACCATTATACCCTGATTTCCCATTGAAAATGGGTTCAGGGTATAAAAA-------TGTATAATAT------------------------------------------------TT------------------------------------TTCG-----G------------------------------------------ATAA-------ATATTAAATC-------------------------------TATATATATCT-------------------ATATATATATATATAATA------------------------------------------------------------------------------------------------CTTTAAA---------------------------------------AT-----------------AG---------------C------------------------------------------------------------------------------------------------------------------AAATTTCATGCC-------TTTAAAT----CTATTTCACT----------------------------------------C------------------------CCC-------CA--------------------------------------------TTTT---------------------------------------CTTGCTTAAACAGCTCCCTGGCTCACATGCCGCT----------GCAC-ATTGATCGG----AATTT---------GATTGAT-----------GCGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................AAAACCATTATACCCTGATTTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
droVir3
CCTCTGCCTGTTACATACATTTGAATTTCGCACAAATACAATATACCCTTATACC-CATTTTTAATGGGTTCAGGGTAT-----------------------------------------AAAAATTAT-------------TTGCCAA-ACTTCTTTAAT-GAAT---------------------TTAG-----A------------------------------------------ATAA-------ACAAGAAAT---------------------------------------------------------------------------------------------------------------------------------GATATAG-------ATTT------------------------------------------GTAAAATTTATATAATTTTATTAATCAA-----------------------------------------A------------------------------------------------------------------------------------------------------------------TAAAT-------TTTGGTATTCAAATAGTTCTTCCTCACT----------ATCT----------------------------------------------------GATAATATTC-TTG-----GTTGA----------------------------------------------------------GCTTCT----TAAT------------------------TCAAATAATGAT----------GTCT-AT---------------------------------------------TGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................TAG-----A------------------------------------------ATAA-------ACAAGAAAT---------------------------------------------------------------------------------------------------------------------------------GATATAG-------AT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
......................................................C-CATTTTTAATGGGTTCAGGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.408000000000000000000000000000080000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AG-------ATTT------------------------------------------GTAAAATTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1550.402000000000000000000000000000000000000000000010000000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCACT----------ATCT----------------------------------------------------GATAATATTC-TTG-----GT...............................................................................................................................................................................2840.251000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATTCAAATAGTTCTTCCTCAC.......................................................................................................................................................................................................................................................................2540.251001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA----------------------------------------------------------GCTTCT----TAAT------------------------TCAAATAATGAT----------G.....................................................2640.251001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTC-TTG-----GTTGA----------------------------------------------------------GCTC..............................................................................................................1850.201001000000000000000000000000000000000000000000000000000000000000
...............TACATTTGAATTTCGCACAAATACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2650.201000000000000000000000000100000000000000000000000000000000000000
........TGTTACATACATTTGAATTTCGCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.171000000000000000000000000010000000000000000000000000000000000000
............................................................TTTAATGGGTTCAGGGTAT-----------------------------------------AAAAATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000001000000000000000000000000000000000
...................................ATACAATATACCCTTATAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000100000000000000000000000000000000000000
............................CGCACAAATACAATATACCCTTATACC-CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051000000000000100000000000000000000000000000000000000000000000000
................................................TTATACC-CATTTTTAATGGGTTCAGGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000000010000000000000000000000000000000000
droGri2
CTTCTGCATATTACATACTTGTG-------CACAAAACTATTACACTCTCTTTGCCCATTTTCTATGGGTTCAAGGTATAAAAGAAG------TAAAGCGA------------------------------------------------TT------------------------------------CTCG-----T-----------------------------------GTAAATT--------------GTAGTGC--------------------------------TTATATGTATATTCTTTACTATG------------------ATAATACTTCATC-----------------------------------------------------------------------------------------------A---------------------------------------AT-----------------TTC----ACGGAAAATA-------------------------------------------CCTGTT-----GAC----------------------------------------------------------------------------------------GTATTCCACT----------------------------------------T------------------------TTCAAA---------------------------------------------------TGC---------------------------------------CTTTC---------------------------TT----------GCAG-GCA------------------------------------------GCCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CTTCTGCCTGTTACATACATTTT-------GGCGACTTTAATATACCATTTCACC-C------TATGGGTGTATGGTATAAAAAGAG------AAAAAC-C------------------------------------------------TA------------------------------------ATAG-----G------------------------------------------A---------AAGCTTAGA--TTGCTAGCTACCGATCCCTTCGACTCTAACATATACAT-------------------GTAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------ATA----ATGGAAAATG-------------------------------------------TATGTA-----TACTAAA--------------------------------------------------TACA------------TATATCCCT-----------------------------------CAAAAAGCATTTCATT--------CTCCTTATTCTTTG----------------------------------------------------------------------------------------------CGC-----------------------------------CCATATACTGTT----------GTCT-ATTA----------AATT---------CATCGAT------------GTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................ATGGGTGTATGGTATAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
...........................................TACCATTTCACC-C------TATGGGTGTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
dp5
CTTCTGGGTGTTACACACATCCACTTC---CACCAGACAG-------------------------------AAGGGCTC----------------A-----AGATGCCGATCAAGAATATAT------------------------------------CCA-TACAT----ATTGATTGTTCCTTTGG-----CTTGCCAAATCT-GGGAGAAGTATTATTACTCCATAGAA----ATT--------------TTTG-------------------------------------------------------------T------GTATAAATACAGTT-------------------------------------------------------------------------------------------------------------------------------------------------CCAAGAAACTTTTCACACAA-----------------------------------------------------------------------------------------------------------------------------------------------------TAAAT----CTATTTTAGTCTTCCTA----------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTA---------------------------CCTCATATACAGGTGCAT-ATTT-------------------------------------------ATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CTTCTGGACGTTACACACATCCATTTTCACCACAAATCTAATATACCCCAATACT-CAT----TTTGAGTATCGGGTAT-----------------------------------------AAAAACCCT-------------C----------------------------------------------AACATC-----------------------------------------------T---------------------------------------------------------------------------------------------------------------ACTATCTATCACC------AATCGACTAATGAATGTGTCCAGCTA---TT-TCTATTATATGGG---------------------------------------------------------------AT----------TCTGCAGAGAATGG----------C-----------------------------------TTTATAT--------------------------------------------------------------------------------------------------------CTTTCA-------------TCTGCCTGACA----------C------TT--TG----------------------------------------GCTCG----------------------------------------------------------T-----------------------------------------GCCCTGCC----------CCGT-GTCACTTGAAATTTTTTT---------T------------------ATCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........TACACACATCCATTTTCACCACAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
droAna3
CTTCACTGCGTTGCACACTTTTG-------ACCAAAATTATAATACCCTCTGC------------------AAGGGTAT-----------------------------------------AAAAATACT-----------------------------TTT-AACAA----A--------------------------------------------------------------------TAA-------ATAATAAAT---------------------------------------------------------------------------------------------------------------------------------AATTTAA-------ATTC------------------------------------------AAATAAAATATAA-------------------AATCAAAAAAAAT------------AA----------C------------------------------------------TATCTAGACAGACTCGAACCCCTTACACCAA---------------------------------------------------------------------------------------------GT----------ATCTGACTC------TT--TTTCTTC---------------TGTATCTCTCC-----------------------------------------------------------------------------------------------------------GTTTCAGTTTCAGTT----------TCGC-TTCGTTT------AATTT---------TA----------------ATGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..TCACTGCGTTGCACACTTTTG-------ACCAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.255500000
.....................TG-------ACCAAAATTATAATACCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.204400000
droBip1
CTTCAGTGCGTTGCACACTTTTA-------AAAAA-ATAATAATACCTTC-TGC-----------------AAGGGTAT-----------------------------------------AAAAAGAGC-------------C--CCAAG-CTTCTATTTT-TAAAA----ATACAAAAGTTATTTTG-----TTAGA-------------------------------------------------------------------------------------------------TATACAT--TATATATTATA------------------ATGTTA------------------------------------------------------------------------------------------------TTACATAGTTATACAT-------------------------------------------------------------------------------------ATAATTTTGCC----------------------------AAGC--------------------------------------------------------------------------------------------T----------ATCCACTTGAAA----------C------TT------------------------TGCACA---------------------------------------------------CTC--------------------------CCTTCTTTCAT------------------------TTGC---ATGCT----------GTAT-ATAAGTC--------------------------------------GGAASizeHit CountTotal NormTotal
No Reads
droKik1
CTTCACTGCGTTGCAAACTTCTG-------ACTGAAATTATAATACCCTGC--------------------AAGGGTAT-----------------------------------------AAAAATATA-------------G-------------------------GAAATGAA---AT-TT---CTTG-----T-------------------------------------------------------------------TA--------------------------------------------------------------------------------------------------------------------------------AGATA---------------------------------------------------------------------------------------------------------------GA---------------------------------------------------------------GAATCTTTGCTACGAAA------------------------------------AATA------------TATTTTTTT---------------TAGAATTGC-------------------ATATTTTT--------ATCTATATTTTTAAAGGTTTTAAACATT-------TA-------------------------------------------------------------------------------------------------TTTCCTTA------------TATA----------AAAC-GTTGTCC-----AAACCT---------TGTTGACAATTTTCTACACATTSizeHit CountTotal NormTotal
No Reads
droFic1
TTTCACTGCGTTGCAAACCTCTG-------GCCAAAATTATAATACCCTT-TGCT-C------TGCA-----AGGGTAT-----------------------------------------AAAAAAATC------------------------------------------------------------AACCTTAGTCAAACATT--------------------------ATAAACT--------------ATAA-------------------------------------------------------------T------ATATATATATAATA-------------------------CCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTTTGACTTTTTCGGT---TTTCTTT--------------------------------------------------------------------------------------------------------CTTG------------------------------------------------TTTTTA---------------CGTACTTTTTT---------GCTTA----------------------------------------------------------CGT-----------------------------------CAGTATTCCGTA----------AAAC-ATTGACT-----TTGTTT---------TATGAAT-----------GAGCSizeHit CountTotal NormTotal
No Reads
droEle1
CTTAACTGCGTTGCAAACTTCTG-------ACTGAAATTATTATACCCTCTGC------------------AAGGGTAT-----------------------------------------AAAAACTCG-------------T--CGGG-------------------GCTATT---------------AAATTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCAAAAAGT-CCCAAGATA---------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------AAA------------------------------------AATA------------TATGGCATTCAAATCGGTAGATCACATT------------------------GTTTGAATTTCTCTCTC------------------------TGCAGACCACC-ATTATCGGGCTGA----------------------------------------------------------GGC-CA----TAAT------------------------TCGCGTGACGCG----------GAAA-ATTC---------GATTT---------G------------------ATTSizeHit CountTotal NormTotal
No Reads
droRho1
CTTCTAGCTGTTACATACTTTTG-------CACGAATACAATATACCCTTTTACT-C------TACGAGTAACGGGTAT-----------------------------------------AAAAATTTA---------------------------------GGCGT-------------------------------------------------------------------------------------------------------------------------------ATATATAAAACGTATAATAAT------------------A------------------------------------------------------------------------------------------------------------------TAATAAAAACGAC-------------------AATTGAAAAAAAA------------AT----------TTAATTCGATACTGCGGTTTTGGCATCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCCCAATGGCTGGCCTTCACCA----------GGTC-ACTAA---AGAGTTTTTC---------GATTGGT-----------GGACSizeHit CountTotal NormTotal
No Reads
droBia1
C------CTGTTACATACTTTGT-------AATGAATCTAGTATACTCTTTTACT-T------TACAAGTAACGGTTATAAAAAATAAG--ATTTT---------------------------------------------------------------------------------------------AGTACC-----------------------------------------------TGCTAGCAAAATTAAA--TTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------------------TATTTAGAGGCAATCAAATT------------CGTTCTATTATAACTCTTTCTGATACTAAAGTACGT----AAAGTTCGTTCT-------TTTAAATCAATGTTATA---------------------------------------------------------------------------------------------------------------------------CATTTTTTAGATTCAATAACCTTGCT----------------------------------------------TAACATT----------GCAA-ACTAAT-----------------------------------------CGSizeHit CountTotal NormTotal
No Reads
droTak1
CTTCTAGCTGTTACATACTTTTG-------CACGAATCTAATATACCCTTTTACT-C------TACGAGTAACGGGTAT-----------------------------------------AAAAATAGT-----------------------------GTT-TAAAA----ACATTCATGT---------------------------------------------------------------------------------------------------------------------------ATTTTCTTATG------------------GTATTACTCCCTCGATTCAT------TATTATGTTATTCAATTAAATTTAAAAACTAAACACATTAAAA-------------------------------------------------------------------------------------------TCTATTAAT----------------------------------TAAACATCAAGAGCTCC----------------------AACAT------------TTTTCCTTGAGTGCTCTACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATG------------------------------------------------------CGATCCTCTGCT----------GAGT-GTTGGCC-----GGGCTT---------GAT-----------------TGSizeHit CountTotal NormTotal
No Reads
droEug1
CTTTTACCTGTTACATACTTTTC-------ACCGAATATAATATACCCTTTTACT-C------TACGAGTAACAGGTATAATAAACAAAACAGTGT----------------------------------------------A--CTTTCCCCTCCCTAAG-AAAT--------------------------------------------------------------------------------------------------------------------------------AGAA-------------------ACACA-------------------------TACAAT------CAATCGCATC------TAT------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGCTAGCAAGTTCGACTTCGAAAACTT--------TGTCACTC------------------------TGCTACTGCCC-TCTGTGGAGAACA-----------------------------------------------------------------------------------------------------AGCCACT----------GGAC-GGC-------------------------------------------GATSizeHit CountTotal NormTotal
No Reads
dm3
CTTTTACCTATTACTTACTTTTC-------AACGAATCTAGTATATTCTTATATC------------------AAGTATATCAAACG---------------------------------------GTAAATCCATGGACACG--CTACG--------TTTAAACTTGTACATACGTA------------------------------------------------------------------------------CGCCGTTTTAATC---------------------------------------------------------------------------------------------------------------------------TTAAATCTAATT-TATATTGTACGTGGATTGGTAAGAGAGTTGTTTCAAC---------------------------------------GT-----------------AG---------------T------------------------------------------------------------------------------------------------------------------AGATATCG-----------------------ACAGC---------------------------------------------------------------------------------------------------------------------------CGCTTTTTCGATTTCAGAAACACAATT--T----G----C-----ATTGCTAAAACCGCT--------------------------------------------------------------------------------CTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................TT-TATATTGTACGTGGATTGGTAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGAAACACAATT--T----G----C-----ATTGCT............................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------AG---------------T------------------------------------------------------------------------------------------------------------------AGATATCG-----------------------ACAGC---------------------------------------------------------------------------------------------------------------------------CGCTTTT........................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTTC-------AACGAATCTAGTATATTCTTATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CG---------------------------------------GTAAATCCATGGACACG--CC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTACGTGGATTGGTAAGAGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT--T----G----C-----ATTGCTAAAACCGCT--------------------------------------------------------------------------------...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------------------------------------------------------------AGATATCG-----------------------ACAGC---------------------------------------------------------------------------------------------------------------------------CGCTTTTTCG.....................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................T-TATATTGTACGTGGATTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TT-TATATTGTACGTGGATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGGATTGGTAAGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATTGGTAAGAGAGTTGTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCAAC---------------------------------------GT-----------------AG---------------T------------------------------------------------------------------------------------------------------------------AGATATCG-----------------------ACAGC---------------------------------------------------------------------------------------------------------------------------...............................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TAAATCCATGGACACG--CTACG--------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TACTTTTC-------AACGAATCTAGTATAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24130.5470000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTTC-------AACGAATCTAGTATATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.5030000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TACTTTTC-------AACGAATCTAGTATATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TTTTC-------AACGAATCTAGTATAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011200001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............CTTACTTTTC-------AACGAATCTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CTTTTC-------AACGAATCTAGTATATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2360.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TACTTTTC-------AACGAATCTAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TACTTTTC-------AACGAATCTAGTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTTC-------AACGAATCTAGTATAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ACTTTTC-------AACGAATCTAGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
droSim2
CTTCTGCCTGTTACATACTTTTC-------AACGAATCTAGTATACCCTTTTACC-C------TACGTGTAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTGGTTTCCAAGCCAAGTGGC---AACATGTATATATAT-------------------ATATATATGTGTATATGA------------------------------------------------------------------------------------------------ATGTACATCTATATAT-------------------------------------------------------------------------------------TTAATATTGTCAGCACC----------------------AG-----------------------------------------------------------------------------------------------------------CCATTTCTTA----------C------GT----------------------------------CG--------------------------------------------TTTTACTACTTTACTACTACTACT-----------------------------------------TCAAATGCCATT----------GATCAGTTCATT-----TCGGACCATCGATGCGC----------------ATCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT----------GATCAGTTCATT-----TCGGAC...............................2114.00410300000000000000
....TGCCTGTTACATACTTTTC-------AACGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.5030000000300000000000
...................TTTC-------AACGAATCTAGTATACCCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.9018000600100000002000
............ACATACTTTTC-------AACGAATCTAGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.701400000086000000000
...CTGCCTGTTACATACTTTTC-------AACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.5511000000110000000000
...................TTTC-------AACGAATCTAGTATACCCTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.45900000000900000000
...CTGCCTGTTACATACTTTTC-------AACGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.30600000000060000000
........TGTTACATACTTTTC-------AACGAATCTAGTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.20400000000400000000
.......CTGTTACATACTTTTC-------AACGAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.15300000000030000000
...CTGCCTGTTACATACTTTTC-------AACGAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100000001000000000
..TCTGCCTGTTACATACTTTTC-------AACGAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100000000010000000
CTTCTGCCTGTTACATACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000010000000
.......CTGTTACATACTTTTC-------AACGAATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000100000000
CTTCTGCCTGTTACATACTTTTC-------AA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000010000000
...CTGCCTGTTACATACTTTTC-------AA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000010000000000
..................TTTTC-------AACGAATCTAGTATACCCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000000010000
............ACATACTTTTC-------AACGAATCTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000000001000000
droSec2
CTTTTACCTGTTACATACTTGGC-------AACGAATCTAGTATACCCTTTTACT-C------TACGAGTAACGCGTAT-----------------------------------------CAAAACTAT-------------T----------------------------------------------AACTTGA----------------------------------------------------------------------------------------------------------------------GAA----------------GAATTACTGCATAGGGTGTCTACAATGT---------ACAAATAAATAAATAAATAACCCAAAATAAAC-------------------------------------------------------------------------------------------TCTACAAAGAA---------------------------------------------------------------------------------------------------------------------------------------------------TCCAAAT------ATTTTC-------------------------------------GCT--A------------------------CCT-------CT--------------------------------------------TT--------------------------------CT----TTCCTG---------------------------CCTG----------GCAA-ATAGATC-----GAATTT---------GATGGAA-----------GAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................ATCTAGTATACCCTTTTACT-C------TACGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0511000
droYak3
CTTCTGCCTGTTACATACTTTCC-------AACGAATCTAGTATACCCTTTTACT-C------TACGAGTAACGGGTAT-----------------------------------------AAAAAAAAA-----------------------------ATTAAAATAGCAAATAAA-------------------------------------------------------------------------------AAACCTTGTTAGCT---------------------------------------------------------------------------------------------------------------------------CAAAATATAATA-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGAACCAAAACCTAGTGGAAATCATACAAGCTTAACATTTTATTTATTCGCTGTTGCTGCTCAGT------------------------ACATTGCCAAGTAACAAAAGCTGCC----------GCTT---ATTTC--------------------GAATTTC-----------GAGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................TACT-C------TACGAGTAACGGGTAT-----------------------------------------AA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.15303000000000
CTTCTGCCTGTTACATACTTTCC-------AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10202000000000
...CTGCCTGTTACATACTTTCC-------AACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
...................TTCC-------AACGAATCTAGTATACCCTTTTAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100100000000
droEre2
CTTCTGCCTGTTACATACTTTTC-------AATAAATCTAGTATACCCTTTTAAT-C------TACGAGTAACGGGTAT-----------------------------------------AATTAGTCT-------------T--CCTAGTCTTCGGAAAA-GGAT--------------------------------------------------------------------------------------------------------------------------------GGTA-------------------CATCA-------------------------ATTAAT------CAATCAGTTA------TAC------------------------ATTA------------------------------------------AGATAAG-CCTATGATTACTTTAACCAACTACAAC-----------------AGG----ATGGTATAAA-------------------------------------------CATCTG-----AACCAAACT------------CACTCCTTCGAAACACTTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAATGGGGCT----------GCAC-ACGCA----------------------------T-----------GGGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................ATACCCTTTTAAT-C------TACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.1010000010

Generated: 05/18/2015 at 01:49 AM