ID:

dmo_2044

 Coordinate:

scaffold_6540:23893485-23893635 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.4 -11.3 -11.3

Flybase annnotation

CDS [Dmoj\GI10252-cds]; exon [dmoj_GLEANR_10195:1]; intron [Dmoj\GI10252-in]

Repeatable elements

NameClassFamilyStrand
(A)nSimple_repeatSimple_repeat+
mature
  1. scaffold_6359:3731437-3731471 +
  2. scaffold_6359:4233287-4233321 +
  3. scaffold_6473:5107706-5107740 +
  4. scaffold_6473:7092121-7092155 +
  5. scaffold_6473:11835660-11835694 +
  6. scaffold_6482:1280187-1280221 +
  7. scaffold_6496:5055974-5056008 +
  8. scaffold_6496:21578015-21578049 +
  9. scaffold_6500:1371674-1371708 +
  10. scaffold_6500:8912664-8912698 +
  11. scaffold_6500:14161992-14162026 +
  12. scaffold_6500:20321975-20322009 +
  13. scaffold_6500:21402318-21402352 +
  14. scaffold_6500:26565627-26565661 +
  15. scaffold_6540:6166803-6166837 +
  16. scaffold_6540:8300769-8300803 +
  17. scaffold_6540:9669919-9669953 +
  18. scaffold_6540:18002742-18002776 +
  19. dmo_2044  scaffold_6540:23893508-23893542 +
  20. scaffold_6680:4652568-4652602 +
  21. scaffold_5650:145-179 -
  22. scaffold_6359:805941-805975 -
  23. scaffold_6473:5373056-5373090 -
  24. dmo_3105  scaffold_6473:9884935-9884969 -
  25. scaffold_6473:12841878-12841912 -
  26. scaffold_6496:7547174-7547208 -
  27. scaffold_6496:7702884-7702918 -
  28. scaffold_6496:17642120-17642154 -
  29. scaffold_6496:24078833-24078867 -
  30. scaffold_6500:5051585-5051619 -
  31. scaffold_6500:5880327-5880361 -
  32. scaffold_6500:8739605-8739639 -
  33. scaffold_6500:16285799-16285833 -
  34. scaffold_6500:28961490-28961524 -
  35. scaffold_6540:9319120-9319154 -
  36. scaffold_6540:17251711-17251745 -
  37. scaffold_6540:26614187-26614221 -
  38. scaffold_6680:287580-287614 -
  39. scaffold_6680:15546336-15546370 -
  40. scaffold_6680:24499294-24499328 -
  41. scaffold_6473:1887832-1887866 +
  42. dmo_1413  scaffold_6498:2939788-2939822 +
  43. scaffold_6500:19289697-19289731 +
  44. scaffold_6500:19738956-19738990 +
  45. scaffold_6540:15121854-15121888 +
  46. scaffold_6540:27093108-27093142 +
  47. scaffold_6680:14731328-14731362 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATTGTGGCCAGGCTAGAAGGTAACACAGCGGCTGGCAACAGTGGCGAGAGGTAAGGACACCAAACCAAAAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGAAATGAAGAAGAGCAACGGTTGTAACTAACTGCGCCATACTCTCTCTATCTATATAATTGATTCATTGATACCATGATTCACAAATTCCACTTAATCATTAGTTATACTCTAACTCAAAAATAGACACGAATCTGTGTTGCA
**************************************************....(((.................................................((....)).(((((((....(((.(((......))))))...)))).)))...........(((.(((.((....))))).))).....)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V041
embryo
 V056
head
 V110
male body		 V049
head
 M046
female body
.........................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACA............................................................................................................................................... 35 0 20 4.70 94 76 18 0 0 0
...........................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGAA............................................................................................................................................ 36 0 14 1.50 21 14 7 0 0 0
...............................................................................................................ATGAAGAAGATCCACGGTT......................................................................................................................... 19 2 1 1.00 1 0 0 1 0 0
..........................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGA............................................................................................................................................. 36 0 20 0.60 12 10 0 0 2 0
............................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGAAA........................................................................................................................................... 36 0 12 0.50 6 3 3 0 0 0
..................................................................AAAAGCCAAAAAAGAAAAAAAAAAAAAAAAAAAAAA..................................................................................................................................................... 36 1 2 0.50 1 1 0 0 0 0
...................GGAACACAGCGGGTGGTAACA................................................................................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0
........................................................................CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACA............................................................................................................................................... 36 0 16 0.19 3 2 1 0 0 0
..........................................................................AAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAACAGA............................................................................................................................................. 36 1 20 0.15 3 2 1 0 0 0
................................................................CCAAAACCCAAAAAACAAAAAAAAAAAAAAAAAAAA....................................................................................................................................................... 36 2 7 0.14 1 0 1 0 0 0
...................GGAACACAGCGGGTGGCATC.................................................................................................................................................................................................................... 20 3 7 0.14 1 0 1 0 0 0
..........................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAG.............................................................................................................................................. 35 0 20 0.10 2 2 0 0 0 0
...............................................................ACCAACACCCAAAAAAAAAAAACAAAAAAAAAAAAA........................................................................................................................................................ 36 3 11 0.09 1 0 1 0 0 0
............................................................................AAAAAAAAAAAAAAAAAAAAAGAAAAAAAACAGAAA........................................................................................................................................... 36 1 12 0.08 1 0 1 0 0 0
............................................................................AAAAAAAAATAAAAAAAAAAAAGAAAAAAACAGAAA........................................................................................................................................... 36 2 14 0.07 1 0 1 0 0 0
...........................................................................AAAAAAAAAAAAAAGAAAAAAAAAAAAAAAACAGAA............................................................................................................................................ 36 1 14 0.07 1 0 0 0 1 0
............................................................................AAAAAAAAAAAAAAACAAAATAAAAAAAAACAGAAA........................................................................................................................................... 36 2 15 0.07 1 1 0 0 0 0
........................................................................CAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAACA............................................................................................................................................... 36 1 16 0.06 1 0 1 0 0 0
...........................................................................AAAAAAAAAAAAAAAGAAAAAAAAAAAAAAACAGAA............................................................................................................................................ 36 1 16 0.06 1 1 0 0 0 0
...........................................................................AAAAAAAAAAAAAAAAGAAAAAAAAAAAAAACAGAA............................................................................................................................................ 36 1 18 0.06 1 0 1 0 0 0
.............................................................................AAAAAAAAAAAAGACAAAAAAAAAAAAAACAGAAA........................................................................................................................................... 35 2 18 0.06 1 0 1 0 0 0
............................................................................AAAAAAAAAAAAAAAAAAAAAAAGATAAAACAGAAA........................................................................................................................................... 36 2 20 0.05 1 0 1 0 0 0
..........................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAGA............................................................................................................................................. 36 1 20 0.05 1 1 0 0 0 0
..........................................................................AAAAAAAAAAAAAGAAAAAAAAAAAAAAACAACAGA............................................................................................................................................. 36 2 20 0.05 1 0 1 0 0 0
..........................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACAGA............................................................................................................................................. 36 1 20 0.05 1 1 0 0 0 0
..........................................................................AAAAAAAAAAAAAAAAAAAAAAATAAAAAAAACAGA............................................................................................................................................. 36 1 20 0.05 1 1 0 0 0 0
..........................................................................AAAAAAAAAAAGAAGAAAAAAAAAAAAAAAAACAGA............................................................................................................................................. 36 2 20 0.05 1 0 1 0 0 0
............................................................................AAAAAAAAAAAAAACAAAAAAAGAAAAAAACAGAAA........................................................................................................................................... 36 2 20 0.05 1 0 1 0 0 0
..........................................................................AAAAAAAAAAAAAAAAAAAAAAACAAAAAAAACAGA............................................................................................................................................. 36 1 20 0.05 1 1 0 0 0 0
...........................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAGA............................................................................................................................................. 35 1 20 0.05 1 1 0 0 0 0
............................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAACAACAGAAA........................................................................................................................................... 36 1 20 0.05 1 1 0 0 0 0
...........................................................................AAAAAAAAAATAAAAAAAAAAAAGAGAAAAACAGAA............................................................................................................................................ 36 3 20 0.05 1 0 1 0 0 0
..............................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACACAGAAACG......................................................................................................................................... 36 2 20 0.05 1 1 0 0 0 0
.......................................................................CCAAAAAAAAAAAAAAAAAAAAAAAA.......................................................................................................................................................... 26 0 20 0.05 1 0 0 0 0 1
...........................................................................AAAAAAAAAAAAAAAAAAATACAAAAAAAAACAGAA............................................................................................................................................ 36 2 20 0.05 1 0 1 0 0 0
..........................................................................AAAAAAAAAAAAAGAAAAAAAAGAAAAAAAAACAG.............................................................................................................................................. 35 2 20 0.05 1 0 1 0 0 0
..........................................................................AAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAACAGA............................................................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
..........................................................................AAAAAAAAAAAAAAAAAAAAAAAATAATAAAACAGA............................................................................................................................................. 36 2 20 0.05 1 0 1 0 0 0
...........................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAACAGAA............................................................................................................................................ 36 1 20 0.05 1 0 1 0 0 0
........................................................................CAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAACA............................................................................................................................................... 36 1 20 0.05 1 0 1 0 0 0
..........................................................................AAAAAAAAAAAAAAAAAAAGAAAATAAAAAAACAGA............................................................................................................................................. 36 2 20 0.05 1 0 1 0 0 0
..........................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC................................................................................................................................................ 33 0 20 0.05 1 1 0 0 0 0
.........................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAG.............................................................................................................................................. 36 0 20 0.05 1 0 1 0 0 0
...........................................................................AAAAAAAAAAAAAAAAAAAAAACAAAAATAACAGA............................................................................................................................................. 35 2 20 0.05 1 1 0 0 0 0
............................................................................AAAAAAAAAAAAAAAAAAAAACAAAAAAAACAG.............................................................................................................................................. 33 1 20 0.05 1 1 0 0 0 0
...........................................................................AAAAAAAAAAAAAAAAAAAAACAAAAATAAACAGAA............................................................................................................................................ 36 2 20 0.05 1 0 0 0 1 0
.........................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAACAG.............................................................................................................................................. 36 1 20 0.05 1 0 1 0 0 0
.........................................................................AAAAAAAAAAAAAAAAAAAAGAAACAGAAAAAACAG.............................................................................................................................................. 36 3 20 0.05 1 0 1 0 0 0
.............................................................................AAAAAAAAAAAAAAAAAAACAATAAAAAACAGAAA........................................................................................................................................... 35 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TAACACCGGTCCGATCTTCCATTGTGTCGCCGACCGTTGTCACCGCTCTCCATTCCTGTGGTTTGGTTTTCGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTTTACTTCTTCTCGTTGCCAACATTGATTGACGCGGTATGAGAGAGATAGATATATTAACTAAGTAACTATGGTACTAAGTGTTTAAGGTGAATTAGTAATCAATATGAGATTGAGTTTTTATCTGTGCTTAGACACAACGT
**************************************************....(((.................................................((....)).(((((((....(((.(((......))))))...)))).)))...........(((.(((.((....))))).))).....)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V056
head
 M060
embryo
 V110
male body
.....................................................................................................................................AGATTGGGGCGGTATGAGA................................................................................................... 19 3 4 0.25 1 1 0 0
.................................................................................................TTTTTTTTGGTCTTTACTT....................................................................................................................................... 19 1 15 0.13 2 0 2 0
................................................................................................................................................................................................TTAAGGTGGATTAGTAG.......................................... 17 2 20 0.05 1 1 0 0
........................................................TGTAGTTTGGTTTTGGGTTTGT............................................................................................................................................................................. 22 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:23893435-23893685 + dmo_2044 ATTGTGGCCAGGCTAGAAGG------TAACA----CAGCGGCTGGCAAC-----------------------------------------------------------AGTGGCGAGAGGTAAGGACACCAA----------------A--------CCA----AAAG----CCAAA------------------------------------------------------------AAA-AAAAAAAAA----AAAAAAAAAAAAAAA-------------------------------------------AAACAGAA----------------AT---------------------------------GAAG---------------------------------AA-------G-------------------------AG---CAAC---------------------------------------------GGTTGTAACTAACTGCGCCAT--------------------------------------------------------A---------------------------CTCTC--------------------------TCTA----------------------TCTATATAATTGATTCATTGATACCATGATTCAC-----------AA-ATT--------------------CCACTTAATCATTAG-----------T---------------TAT---------------------ACTCTA-------ACTCAAAAAT--AGA---CACGAA-TCTGTGTTGCA----
droVir3 scaffold_12855:8709004-8709191 + ATTTGGGCCAGGCTAAAGAC------GGATG----CAGCCGCGGCCA--------------------------------------------------GC---------AGCGGCGAAAGGTAAG--------------------------------------------------------------------------------------------------------------------------------------------CC--------ACAAGTGACAACAACAGTC-----------------------------------------------------------------------------T--------------------------------------C-------A-----------------CA------------------------------------------G--TCG-------------GGTGGAGACGACAGCGCCATGCTCTGTTCACAGTGTGCAAA------------------------------------------------------------------------------------------------------------------------------------------------AACGCT---C-----------AGAGTT---------------------CTCTTGATTATTGTACGAATGA---C---------------TCTCA---------AA---------CTGTA--------------GCC--GCATAC---C----------AGTT----
droGri2 scaffold_14853:4577490-4577665 + AAAACT-------AA-------AAGAAAACAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-AAACAAAAATGAAA---ATGAAGGA---------A-------A---------------------------AAAACC-----------------------------------ATTT---------------TA------------------------------------------------------------------------GCCTT---------------------------------------------AGCACAATGT---------------T------------------------------------------TTACCCACCATT---------------------------C------------------------------------------------------------------------CTGTTTAATGTATTTATTATAATAAACAC-------------------A----------------------CATACAC---C---------------TCCAT---------AAGCATACACACACAC-------ACACACACACACGCA---CGCAAACTG-----TGTT----
droWil2 scf2_1100000004762:2353530-2353689 - AGATGG-------AG-------AGAAGAAAACAAA-----------------------------------------------------------CAAC-------------------------------------------------A-------AACAA----AAAG----TGGAAACGAA---------------------------CA-----------------------------AA-------------------AAAAATGA-------------------------------------------GAA---------------------AT-----------------G---------------AAACG-----------------------------------------A---------------------------TTTCG--AACTGAATATCT---------------CAT---CAATATGCAAGACGC--------------------------------------------------------------------------ATTTGTTTTAT-------------------------------------------------------------------------------AA---------------------------------AATCC-------------------A----------------------TAATTGG---T---------------TCTA---------------------CTGTACTTACGCACTCGAAAA-----------------------TAAA----
dp5 XL_group1e:11562519-11562673 + AAAAGT-------GA-------TG-----------------------------------------------------------------------------------------------------------AAAAATGATAAAAACCG-------AATTG----AAAA----TCAAATCAAA---------------------------AA-----------------------------TG-----AGA----AAAAAGCAAAG--------A-A-------A---------------------------AAAATATA-------------------------TA----------------------------T--------------------------------------------------------------------AC---AAA---------TTTT----------------------------------------------------------------------------------------------------GA-----------------TTAATTTTTG----------------------------------------GC-GT---------------------TTTGTTCCATGGAT--------------------------------------------------------------------------------GTTGTTGATAATATGAAAA-----ATAAAATCC-----------------------------------------------------CCCTCATTAT
droPer2 scaffold_82:765-917 - AAACCA-------CA-------GC-----------------------------------------------------------------------------------------------------------T-AA-------------A-----AAA-----------AAAA----AA------------------------------CAACGC-----------------------------------------------CCAGAAAAAA--AGAGAAATTAATAAAGTACT-------------------------------CGAAC---------GACAC-------AAAACG---------------AAACG-----------------------------------------ATTGAACCA-----------------------CA---T-----TTGGC--------------------------------------GGCTAT--------------AT---------------------------------------T------------------------AATC----------------------------------------GCTT----------------------TTTGTATTCTCGATTTTTTGGTTCTTTATTTCTC-------------------------------------------------------------------------------------------------------------------------------------------------------ACGTT
droAna3 scaffold_13340:10937841-10938003 - ACCATGGCGAATTTTTAAG---------------G-----------------------------------------------------------GTGGCTGCCGTAAAAATAACAAAAAAAAAGAGGAAAAA----------------A--------TAAAATGAAAA----ACA------------------------GAGGGGAAAAAAGAA---------------------------------------------GAAAAAAAGA-------------------------------------------GAAAAGAAGCAAAA----------AAA-------------ACTC---------------AG------------------------------------------------------------------------ACGCA---------------------------------------------GGCGCAATAACTAACCACCCCTT--------------------------------------------------------T---------------------------CTCCC--------------------------TC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCA----
droBip1 scf7180000396589:710629-710790 - ACCAAA-------AC-------AA-----------------------------------------------------------------------------------------------------------A-----------------AATAAAAGG----------AAA------A---------------------------------------------------------------AAAAT-CAA----A-----AAAAATAAAAA--A-T-------A----------------------------AAA---------------------AT---------------------------------TAGCA---------------------------------A-------T-------------------------TT---AAA---T-----TTCGAGGAGCC---TTTCTAA-TTTCTCTTTGCCG---------CACGTTTTCAC-----------------------------------------------------------ATTTT-------------------------TTC------------------------------------------------TTTATTTATATA----------------AATTTT-------------CC-------------------ATATTTTTAACTTATTCTTTA-----------------------------------------------------------------------------------------------TTTATA----
droKik1 scf7180000302469:643638-643753 - GTAGCG-------AA-------ACAAAAACGGAAACAGAAGTAAGAAAA-----------------------------------------------------------CGTGGCAAGCGGCACTC------G----------------C-C-------G---------------------------------------------------AC------ACTCCAA------------A----------------------AAATAC--------AAAAACAAAAAAAAATACT-------------------------------CAAAAAACAAAAAA---------------------------------AAACG---------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG----------GCA----
droFic1 scf7180000453342:894314-894477 - CCAAAC-------CA-------AA-----------------------------------------------------------------------------------------------------------C-AA-------------A-----AAAC----------AAAA----AC------------------------------CAAAAA---------------------------------CC---AAA-----ACAAAAA--------A-------A----------------------------AAAC----------------------------------CAAATC---------------GAGC---------------------------------GC-------G-------------------------CA---CAAC---------------------------------------------GTTCCTAACTCT--------------AG---------------------------------------T------------------------TACTACCCTCGTTCTCTC-GTTCTCTCGACTCTCGATTCCCACGAC-----------------------ATC----------------CCGAACCATGATCACC-----------AC-A------------------------------------------------------------------------------------------------------------------TC---TCC---------ACTTCACCAT
droEle1 scf7180000491349:963377-963505 - AAGTGC-------GC-------TG-----------------------------------------------------------------------------------------------------------G----------------A-C-------AC--------AGCGCT------------------------------------------------AAA------------G----------------------AAAAAC--------AAAAATAAAAAAAAGGGACCAAGAAAAAGCTGAGAAAAAAGT----------------------------------TG-------------------------------------------------------------------------------------------CG---TA--AAT-----TTG-------------------------------------------------------------T---------------------------------------TATGTACT--------------------------------TTT--------------------------TTCT----------------------TTTA---------------------------------------------------------------------------------AATAAAT--------------------------------------------------------------AAATAT--GGGTAC---GA----------GGA----
droRho1 scf7180000779914:505978-506093 - CCAGGA-------CA-------AC-----------------------------------------------------------------------------------------------------------A-----------------G------TTCA----CA--AAAA----AATAGA---------------------------AAT-----------------------------------AAA----A-----AAAAACTAAAA--G-G-------A----------------------------AAAC----------------------------------TGAATG---------------GAACC-----------------------------------------GCAAAACCGTGGCTAACGTAAAATG------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC--------------------------ACCA----------------------TTTA---------------------------------------------------------------------------------ACT--------------------------------AAATTGT-----------------------------------------------------TTCATT----
droBia1 scf7180000301760:1829730-1829915 - AGAAAT-------GA-------AA-----------------------------------------------------------------------------------------------------------A-----------------AAGAAA-------------AAAA----AG------------------------------AAAAAA-----------------------------------------------GAAAAAAAGA--A-A-------AGAAATTAA--------------------C-----------CA----------AGG--------------------------------AAACA-----------------------------------------G---------------------------ATTAG---------------------------------------------AACTTATTGATTCTACATTTGAT--------------------------------------------------------T---------------------------TTGCCTCTCCTTATGACTATTTACATTAATTAC-----------------------ATT----------------TA------------GTAC---------------------------------------------GTTGA-T------TTTATTTGAAATCTCGGAT-----AA-----------------------------------AAAAT--GCG---CAGAAATTGTGTTTTTCA----
droTak1 scf7180000415429:191857-192092 + CCAGGC-------CA-------AAGGGGGCG----TAACCACTTTTA-------------------------------------------------------------AGTAATGAGAAACCAA-------------------------------------------------C------------------------------------------------AAA------------C----------------------GAAAGC--------AAAAACAAAAAAAGGAAATCACAAAAA----------------------------------------------------------------------AAACGAGGGGGTTACTAATAAAACGATAGAGTTGAAAAAAGATAAAGCAAAA-----------------------------------ATGTTG---------------CAA---TAATAGCGAAAATGT----------------------------------------------------------------TA-----------------TTATTTAATT----------------------------------------GC-GTATTATTAAAGGCAAATTATTA-------------------------------------------------TTACCATTATTATTGCTATTCTTA------------------------------------------------------------------------------------------------ACGTA-TCTAAGTTGTA----
droEug1 scf7180000409804:2425249-2425374 + GAGGAT-------AA-------GA-----------------------------------------------------------------------------------------------------------T-GG-------------T-----GGA-----------AGGG----AGCTGG---------------------------AACGAAGGGATGCCAAAGAGGAGACAGACAA-GAAGAAAAAT-AAA---ATAAAAAGAAA-------------------------------------------AAACCAAA----------------AT---------------------------------GATT---------------------------------TA-------A-------------------------TG---CA--AAT-----------------------------------------------------------------T------------------------------------------TTATGCGCCATA---------------------------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCC----
dm3 chr3L:6398607-6398843 + AGGTAA-------CC-------CA---------------AGCTGGCTAAACAAGCGAGCGTTAAATCCAAACTAACTATAAATAAAACAAAAAGCCAAC---------AATGGCAAAAA------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA---------------------------------------------------------------------------------------------------------CA-----------------------------------------ACAAAACTCTGGATAAA--G------------------------------------------G--CAG-------------GGTGGGGATAAC----TCACACTTTACACACAAAGCGCAAAAATATTTAGGTACATAAGAATCTTTTAGATTCA-CATCTC--------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTAATTATTAGAT---------------AA----------------------------------TAT--------GTTCACACAT--GAA---CACGAA-TATA-TTTAAA----
droSim2 2l:11941528-11941724 + CAACAG-------CT-------AC-----------------------------------------------------------------------------------------------------------A-----------------GCAAAAAAG----------AAA------AAAAA---------------------------AA-----------------------------AA-----AG---AAA-ATAGGAAAA--------A-T-------A---------------------------AG-------------------------GAAAAAGA----------------------------C--------------------------------------------------------------------AG---CAAC--G-----TTGGCGGCTCCTTCTTTCTGC-TAT-------------GATGATGATGATGATGC-ACGTATTG-----------------------------------------------------------------------------------------------------------------------------------TTTGCT----------------TGTAAACATGAT---A-----------AAAATT--------------------CAAATTAGCCATAAT-----------ATATGGCAAGTCAAGG-----AG-----------------------------------AGAGT--AC-----ACACA-TATGAGTCTTC----
droSec2 scaffold_0:14043693-14043851 - AGTTTA-------AA-------AGGGAAACAGAGA-----------------------------------------------------------CCGGC---------AGTGGCAAAAGGAAAAGGCAGCAA-AAGCTACA--------AAAACAA---------------------A-CAACTTTTAGCAGCAAAAATGTGTGGAAAAAAGTA---------------------------------A------A---AAAAAAATTAA-------------------------------------------AAGCTAAA----------------AGGAAACAGAGAGCCAAATG---------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAAGCC-----------------------------------------------------ACCACA----
droYak3 3L:11575159-11575332 - ATCTAA-------AG-----CAGC-----------------------------------------------------------------------------------------------------------T-AA-------------A-----AAA-----------AAAATA-------------------------------------------------------------------------C------A---AGAAAACTAAAAAACA-T-------AAAAGTGGGTAAAGCAGACGCGCC-----------------------------------------------GC---------------TG------------------------------------------------------------------------ACCGC---------------------------------------------AGCAC--------------------------------------------------------------------------AATTTTTTTTT-------------------------------------------------------------------------------GT---------------------------------TTTCC-------------------ATATTTTCGTTTTGTTTTTT-ACT---------------AATTTGCTTA-----AT-------TAGCGCG---ACTTAC-------ACTCATAAAT--ATA---TAGAAG-TGTG--------TAT
droEre2 scaffold_4770:16345872-16346012 - AAAACC-------AC-------CA-----------------------------------------------------------------------------------------------------------A-----------------ACAACAATTTA-----------------------------------------------------------------------------CAA-AAAAA-AAA----A-----AAAAACAAAAA--A-T-------A----------------------------AAAC----------------------------------TTAATGAAATTAAAACTGAAA--------------------------------------C-------A-----------------TAGAAGGA--TCGTA--AATAG-----A-------------------------------------------------------------G---------------------------------------T--------------------------CTATCAATATATGTGC-ATATGCATATATAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAC--GTTCAC---GA----------ACT----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ATTGTGGCCAGGCTAGAAGG------TAACA----CAGCGGCTGGCAAC-----------------------------------------------------------AGTGGCGAGAGGTAAGGACACCAA----------------A--------CCA----AAAG----CCAAA------------------------------------------------------------AAA-AAAAAAAAA----AAAAAAAAAAAAAAA-------------------------------------------AAACAGAA----------------AT---------------------------------GAAG---------------------------------AA-------G-------------------------AG---CAAC---------------------------------------------GGTTGTAACTAACTGCGCCAT--------------------------------------------------------A---------------------------CTCTC--------------------------TCTA----------------------TCTATATAATTGATTCATTGATACCATGATTCAC-----------AA-ATT--------------------CCACTTAATCATTAG-----------T---------------TAT---------------------ACTCTA-------ACTCAAAAAT--AGA---CACGAA-TCTGTGTTGCA----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................AAA------------------------------------------------------------AAA-AAAAAAAAA----AAAAAAAAAAAAAAA-------------------------------------------AAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................35204.709407601800
................................................................................................................................................................................A------------------------------------------------------------AAA-AAAAAAAAA----AAAAAAAAAAAAAAA-------------------------------------------AAACAGAA----------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................36141.50210140700
...............................................................................................................................................................................AA------------------------------------------------------------AAA-AAAAAAAAA----AAAAAAAAAAAAAAA-------------------------------------------AAACAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................36200.60120102000
.............................................................................................................................................................................................................................................AAA-AAAAAAAAA----AAAAAAAAAAAAAAA-------------------------------------------AAACAGAA----------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................36120.506030300
.............................................................................................................................................................................CAAA------------------------------------------------------------AAA-AAAAAAAAA----AAAAAAAAAAAAAAA-------------------------------------------AAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................36160.193020100
...............................................................................................................................................................................AA------------------------------------------------------------AAA-AAAAAAAAA----AAAAAAAAAAAAAAA-------------------------------------------AAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................35200.102020000
............................................................................................................................................................................CCAAA------------------------------------------------------------AAA-AAAAAAAAA----AAAAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
...............................................................................................................................................................................AA------------------------------------------------------------AAA-AAAAAAAAA----AAAAAAAAAAAAAAA-------------------------------------------AAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................33200.051010000
..............................................................................................................................................................................AAA------------------------------------------------------------AAA-AAAAAAAAA----AAAAAAAAAAAAAAA-------------------------------------------AAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................36200.051000100
droVir3
ATTTGGGCCAGGCTAAAGAC------GGATG----CAGCCGCGGCCA--------------------------------------------------GC---------AGCGGCGAAAGGTAAG--------------------------------------------------------------------------------------------------------------------------------------------CC--------ACAAGTGACAACAACAGTC-----------------------------------------------------------------------------T--------------------------------------C-------A-----------------CA------------------------------------------G--TCG-------------GGTGGAGACGACAGCGCCATGCTCTGTTCACAGTGTGCAAA------------------------------------------------------------------------------------------------------------------------------------------------AACGCT---C-----------AGAGTT---------------------CTCTTGATTATTGTACGAATGA---C---------------TCTCA---------AA---------CTGTA--------------GCC--GCATAC---C----------AGTT----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTCTGTTCACAGTGTG..........................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
droGri2
AAAACT-------AA-------AAGAAAACAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA-AAACAAAAATGAAA---ATGAAGGA---------A-------A---------------------------AAAACC-----------------------------------ATTT---------------TA------------------------------------------------------------------------GCCTT---------------------------------------------AGCACAATGT---------------T------------------------------------------TTACCCACCATT---------------------------C------------------------------------------------------------------------CTGTTTAATGTATTTATTATAATAAACAC-------------------A----------------------CATACAC---C---------------TCCAT---------AAGCATACACACACAC-------ACACACACACACGCA---CGCAAACTG-----TGTT----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AGATGG-------AG-------AGAAGAAAACAAA-----------------------------------------------------------CAAC-------------------------------------------------A-------AACAA----AAAG----TGGAAACGAA---------------------------CA-----------------------------AA-------------------AAAAATGA-------------------------------------------GAA---------------------AT-----------------G---------------AAACG-----------------------------------------A---------------------------TTTCG--AACTGAATATCT---------------CAT---CAATATGCAAGACGC--------------------------------------------------------------------------ATTTGTTTTAT-------------------------------------------------------------------------------AA---------------------------------AATCC-------------------A----------------------TAATTGG---T---------------TCTA---------------------CTGTACTTACGCACTCGAAAA-----------------------TAAA----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
AAAAGT-------GA-------TG-----------------------------------------------------------------------------------------------------------AAAAATGATAAAAACCG-------AATTG----AAAA----TCAAATCAAA---------------------------AA-----------------------------TG-----AGA----AAAAAGCAAAG--------A-A-------A---------------------------AAAATATA-------------------------TA----------------------------T--------------------------------------------------------------------AC---AAA---------TTTT----------------------------------------------------------------------------------------------------GA-----------------TTAATTTTTG----------------------------------------GC-GT---------------------TTTGTTCCATGGAT--------------------------------------------------------------------------------GTTGTTGATAATATGAAAA-----ATAAAATCC-----------------------------------------------------CCCTCATTATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AAACCA-------CA-------GC-----------------------------------------------------------------------------------------------------------T-AA-------------A-----AAA-----------AAAA----AA------------------------------CAACGC-----------------------------------------------CCAGAAAAAA--AGAGAAATTAATAAAGTACT-------------------------------CGAAC---------GACAC-------AAAACG---------------AAACG-----------------------------------------ATTGAACCA-----------------------CA---T-----TTGGC--------------------------------------GGCTAT--------------AT---------------------------------------T------------------------AATC----------------------------------------GCTT----------------------TTTGTATTCTCGATTTTTTGGTTCTTTATTTCTC-------------------------------------------------------------------------------------------------------------------------------------------------------ACGTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ACCATGGCGAATTTTTAAG---------------G-----------------------------------------------------------GTGGCTGCCGTAAAAATAACAAAAAAAAAGAGGAAAAA----------------A--------TAAAATGAAAA----ACA------------------------GAGGGGAAAAAAGAA---------------------------------------------GAAAAAAAGA-------------------------------------------GAAAAGAAGCAAAA----------AAA-------------ACTC---------------AG------------------------------------------------------------------------ACGCA---------------------------------------------GGCGCAATAACTAACCACCCCTT--------------------------------------------------------T---------------------------CTCCC--------------------------TC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCCA----SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................AAAAAAAAAGAGGAAAAA----------------A--------T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100
............................................................................................................................................................................................................................................................................A-------------------------------------------GAAAAGAAGCAAAA----------AAA-------------ACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..........................................................................................................................................................................................................................................................................................................................AAAGAAGCAAAA----------AAA-------------ACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..........................................................................................................................................................................................................GGGAAAAAAGAA---------------------------------------------GAAAAAAAGA-------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
......................................................................................................................................................................AA----ACA------------------------GAGGGGAAAAAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501010000
........................................................................................................................................................................................................................................................................................................................GAAAAGAAGCAAAA----------AAA-------------AT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.061100000
................................................................................................................ACAAAAAAAAAGAGGAAAAC----------------C--------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
droBip1
ACCAAA-------AC-------AA-----------------------------------------------------------------------------------------------------------A-----------------AATAAAAGG----------AAA------A---------------------------------------------------------------AAAAT-CAA----A-----AAAAATAAAAA--A-T-------A----------------------------AAA---------------------AT---------------------------------TAGCA---------------------------------A-------T-------------------------TT---AAA---T-----TTCGAGGAGCC---TTTCTAA-TTTCTCTTTGCCG---------CACGTTTTCAC-----------------------------------------------------------ATTTT-------------------------TTC------------------------------------------------TTTATTTATATA----------------AATTTT-------------CC-------------------ATATTTTTAACTTATTCTTTA-----------------------------------------------------------------------------------------------TTTATA----SizeHit CountTotal NormTotal
No Reads
droKik1
GTAGCG-------AA-------ACAAAAACGGAAACAGAAGTAAGAAAA-----------------------------------------------------------CGTGGCAAGCGGCACTC------G----------------C-C-------G---------------------------------------------------AC------ACTCCAA------------A----------------------AAATAC--------AAAAACAAAAAAAAATACT-------------------------------CAAAAAACAAAAAA---------------------------------AAACG---------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG----------GCA----SizeHit CountTotal NormTotal
No Reads
droFic1
CCAAAC-------CA-------AA-----------------------------------------------------------------------------------------------------------C-AA-------------A-----AAAC----------AAAA----AC------------------------------CAAAAA---------------------------------CC---AAA-----ACAAAAA--------A-------A----------------------------AAAC----------------------------------CAAATC---------------GAGC---------------------------------GC-------G-------------------------CA---CAAC---------------------------------------------GTTCCTAACTCT--------------AG---------------------------------------T------------------------TACTACCCTCGTTCTCTC-GTTCTCTCGACTCTCGATTCCCACGAC-----------------------ATC----------------CCGAACCATGATCACC-----------AC-A------------------------------------------------------------------------------------------------------------------TC---TCC---------ACTTCACCATSizeHit CountTotal NormTotal
No Reads
droEle1
AAGTGC-------GC-------TG-----------------------------------------------------------------------------------------------------------G----------------A-C-------AC--------AGCGCT------------------------------------------------AAA------------G----------------------AAAAAC--------AAAAATAAAAAAAAGGGACCAAGAAAAAGCTGAGAAAAAAGT----------------------------------TG-------------------------------------------------------------------------------------------CG---TA--AAT-----TTG-------------------------------------------------------------T---------------------------------------TATGTACT--------------------------------TTT--------------------------TTCT----------------------TTTA---------------------------------------------------------------------------------AATAAAT--------------------------------------------------------------AAATAT--GGGTAC---GA----------GGA----SizeHit CountTotal NormTotal
No Reads
droRho1
CCAGGA-------CA-------AC-----------------------------------------------------------------------------------------------------------A-----------------G------TTCA----CA--AAAA----AATAGA---------------------------AAT-----------------------------------AAA----A-----AAAAACTAAAA--G-G-------A----------------------------AAAC----------------------------------TGAATG---------------GAACC-----------------------------------------GCAAAACCGTGGCTAACGTAAAATG------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC--------------------------ACCA----------------------TTTA---------------------------------------------------------------------------------ACT--------------------------------AAATTGT-----------------------------------------------------TTCATT----SizeHit CountTotal NormTotal
No Reads
droBia1
AGAAAT-------GA-------AA-----------------------------------------------------------------------------------------------------------A-----------------AAGAAA-------------AAAA----AG------------------------------AAAAAA-----------------------------------------------GAAAAAAAGA--A-A-------AGAAATTAA--------------------C-----------CA----------AGG--------------------------------AAACA-----------------------------------------G---------------------------ATTAG---------------------------------------------AACTTATTGATTCTACATTTGAT--------------------------------------------------------T---------------------------TTGCCTCTCCTTATGACTATTTACATTAATTAC-----------------------ATT----------------TA------------GTAC---------------------------------------------GTTGA-T------TTTATTTGAAATCTCGGAT-----AA-----------------------------------AAAAT--GCG---CAGAAATTGTGTTTTTCA----SizeHit CountTotal NormTotal
No Reads
droTak1
CCAGGC-------CA-------AAGGGGGCG----TAACCACTTTTA-------------------------------------------------------------AGTAATGAGAAACCAA-------------------------------------------------C------------------------------------------------AAA------------C----------------------GAAAGC--------AAAAACAAAAAAAGGAAATCACAAAAA----------------------------------------------------------------------AAACGAGGGGGTTACTAATAAAACGATAGAGTTGAAAAAAGATAAAGCAAAA-----------------------------------ATGTTG---------------CAA---TAATAGCGAAAATGT----------------------------------------------------------------TA-----------------TTATTTAATT----------------------------------------GC-GTATTATTAAAGGCAAATTATTA-------------------------------------------------TTACCATTATTATTGCTATTCTTA------------------------------------------------------------------------------------------------ACGTA-TCTAAGTTGTA----SizeHit CountTotal NormTotal
No Reads
droEug1
GAGGAT-------AA-------GA-----------------------------------------------------------------------------------------------------------T-GG-------------T-----GGA-----------AGGG----AGCTGG---------------------------AACGAAGGGATGCCAAAGAGGAGACAGACAA-GAAGAAAAAT-AAA---ATAAAAAGAAA-------------------------------------------AAACCAAA----------------AT---------------------------------GATT---------------------------------TA-------A-------------------------TG---CA--AAT-----------------------------------------------------------------T------------------------------------------TTATGCGCCATA---------------------------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCC----SizeHit CountTotal NormTotal
No Reads
dm3
AGGTAA-------CC-------CA---------------AGCTGGCTAAACAAGCGAGCGTTAAATCCAAACTAACTATAAATAAAACAAAAAGCCAAC---------AATGGCAAAAA------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA---------------------------------------------------------------------------------------------------------CA-----------------------------------------ACAAAACTCTGGATAAA--G------------------------------------------G--CAG-------------GGTGGGGATAAC----TCACACTTTACACACAAAGCGCAAAAATATTTAGGTACATAAGAATCTTTTAGATTCA-CATCTC--------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTAATTATTAGAT---------------AA----------------------------------TAT--------GTTCACACAT--GAA---CACGAA-TATA-TTTAAA----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............CC-------CA---------------AGCTGGCTAAACAAGCGAGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA--G------------------------------------------G--CAG-------------GGTGGGGATAAC----TCACAC.........................................................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AACAAGCGAGCGTTAAATCCAAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................TCCAAACTAACTATAAATAAAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA--G------------------------------------------G--CAG-------------GGTGGGGATAAC----TCACACT........................................................................................................................................................................................................................................................................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACACAT--GAA---CACGAA-TATA-TTT.......25200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................AAAAA------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA---------------------------------------------------------------------------------------------------------CA-----------------------------------------ACAAAACTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACACAAAGCGCAAAAATATTTAGG............................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACAT--GAA---CACGAA-TATA-T.........21200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000050000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------GTTCACACAT--GAA---CACGAA-TATA-TT........26200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................AAAAA------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA---------------------------------------------------------------------------------------------------------CA-----------------------------------------ACAAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2080.2520000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................AAA------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA---------------------------------------------------------------------------------------------------------CA-----------------------------------------ACAAAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................CAAAAA------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA---------------------------------------------------------------------------------------------------------CA-----------------------------------------ACAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................1990.2220000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACAT--GAA---CACGAA-TATA-TT........22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT--GAA---CACGAA-TATA-TTTAA.....21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACACAT--GAA---CACGAA-TATA-TTTAA.....27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACACAT--GAA---CACGAA-TATA-TTTATT----27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACACAT--GAA---CACGAA-TATA-TTTAA.....26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------GTTCACACAT--GAA---CACGAA-TATA-TTTA......28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAT--GAA---CACGAA-TATA-TT........20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACACAT--GAA---CACGAA-TAT............21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACAT--GAA---CACGAA-TATA-TTT.......23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--------GTTCACACAT--GAA---CACGA.................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACACAT--GAA---CACGAA-TAT............20200.0510000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------GTTCACACAT--GAA---CACGAA-T..............21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--GAA---CACGAA-TATA-TTTAAA----21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACACAT--GAA---CACGAA-TATA-T.........23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT--GAA---CACGAA-TATA-TTT.......20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................AAAAA------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA---------------------------------------------------------------------------------------------------------CA-----------------------------------------ACAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAACAG-------CT-------AC-----------------------------------------------------------------------------------------------------------A-----------------GCAAAAAAG----------AAA------AAAAA---------------------------AA-----------------------------AA-----AG---AAA-ATAGGAAAA--------A-T-------A---------------------------AG-------------------------GAAAAAGA----------------------------C--------------------------------------------------------------------AG---CAAC--G-----TTGGCGGCTCCTTCTTTCTGC-TAT-------------GATGATGATGATGATGC-ACGTATTG-----------------------------------------------------------------------------------------------------------------------------------TTTGCT----------------TGTAAACATGAT---A-----------AAAATT--------------------CAAATTAGCCATAAT-----------ATATGGCAAGTCAAGG-----AG-----------------------------------AGAGT--AC-----ACACA-TATGAGTCTTC----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................A-T-------A---------------------------AG-------------------------GAAAAAGA----------------------------C--------------------------------------------------------------------AG---CA...............................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-TAT-------------GATGATGATGAT...................................................................................................................................................................................................................................................................................................................................................1821.00200000200000000000
..............................................................................................................................................................................................................................................................A-ATAGGAAAA--------A-T-------A---------------------------AG-------------------------GAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGATGATGC-ACG..........................................................................................................................................................................................................................................................................................................................................1820.50100000000001000000
........................................................................................................................................................AAAAAG----------AAA------AAAAA---------------------------AA-----------------------------AA-----AG---AA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------GATGATGATGATGATGC-A............................................................................................................................................................................................................................................................................................................................................1960.33200000000002000000
.......................................................................................................................................................AAAAAAG----------AAA------AAAAA---------------------------AA-----------------------------AA-----..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.15300000000000003000
............................................................................................................................................................AG----------AAA------AAAAA---------------------------AA-----------------------------AA-----AG---AAA-A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.14100000000000001000
.........................................................................................................................................................AAAAG----------AAA------AAAAA---------------------------AA-----------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.10200000000000002000
...........................................................................................................................................................AAG----------AAA------AAAAA---------------------------AA-----------------------------AA-----A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.10200000010001000000
...........................................................................................................................................................AAG----------AAA------AAAAA---------------------------AA-----------------------------AA-----AG---A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.09100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGATGATGATGC-A............................................................................................................................................................................................................................................................................................................................................17120.08100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-------------GATGATGATGATGA.................................................................................................................................................................................................................................................................................................................................................17180.06100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------GATGATGATGATGATGC-.............................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
........................................................................................................................................................AAAAAG----------AAA------AAAAA---------------------------AA-----------------------------AA-----..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05110000000000000000
.......................................................................................................................................................AAAAAAG----------AAA------AAAAA---------------------------AA-----------------------------AA-----A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-------------GATGATGATGATG..................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-------------GATGATGATGATGATGC-AT...........................................................................................................................................................................................................................................................................................................................................21200.05100000000001000000
.........................................................................................................................................................AAAAG----------AAA------AAAAA---------------------------AA-----------------------------AA-----..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000000001000
.........................................................................................................................................................AAAAG----------AAA------AAAAA---------------------------AA-----------------------------AA-----A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000000001000
droSec2
AGTTTA-------AA-------AGGGAAACAGAGA-----------------------------------------------------------CCGGC---------AGTGGCAAAAGGAAAAGGCAGCAA-AAGCTACA--------AAAACAA---------------------A-CAACTTTTAGCAGCAAAAATGTGTGGAAAAAAGTA---------------------------------A------A---AAAAAAATTAA-------------------------------------------AAGCTAAA----------------AGGAAACAGAGAGCCAAATG---------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAAGCC-----------------------------------------------------ACCACA----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ATCTAA-------AG-----CAGC-----------------------------------------------------------------------------------------------------------T-AA-------------A-----AAA-----------AAAATA-------------------------------------------------------------------------C------A---AGAAAACTAAAAAACA-T-------AAAAGTGGGTAAAGCAGACGCGCC-----------------------------------------------GC---------------TG------------------------------------------------------------------------ACCGC---------------------------------------------AGCAC--------------------------------------------------------------------------AATTTTTTTTT-------------------------------------------------------------------------------GT---------------------------------TTTCC-------------------ATATTTTCGTTTTGTTTTTT-ACT---------------AATTTGCTTA-----AT-------TAGCGCG---ACTTAC-------ACTCATAAAT--ATA---TAGAAG-TGTG--------TATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AAAACC-------AC-------CA-----------------------------------------------------------------------------------------------------------A-----------------ACAACAATTTA-----------------------------------------------------------------------------CAA-AAAAA-AAA----A-----AAAAACAAAAA--A-T-------A----------------------------AAAC----------------------------------TTAATGAAATTAAAACTGAAA--------------------------------------C-------A-----------------TAGAAGGA--TCGTA--AATAG-----A-------------------------------------------------------------G---------------------------------------T--------------------------CTATCAATATATGTGC-ATATGCATATATAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAC--GTTCAC---GA----------ACT----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA--AATAG-----A-------------------------------------------------------------G---------------------------------------T--------------------------CTATCAATATAT......................................................................................................................................................................................................................................................2311.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATATAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAC--GTTCAC---GA----------AC.....2311.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAC--GTTCAC---GA----------ACT----2311.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TCGTA--AATAG-----A-------------------------------------------------------------G---------------------------------------T--------------------------CTATCAATATAT......................................................................................................................................................................................................................................................2611.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA--AATAG-----A-------------------------------------------------------------G---------------------------------------T--------------------------CTATCAAT..........................................................................................................................................................................................................................................................2011.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAC--GTTCAC---GA----------A......2111.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGA--TCGTA--AATAG-----A-------------------------------------------------------------G---------------------------------------T--------------------------C.................................................................................................................................................................................................................................................................1911.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAG-----A-------------------------------------------------------------G---------------------------------------T--------------------------CTATCAATATAT......................................................................................................................................................................................................................................................2011.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAC--GTTCAC---GA----------A......1911.0010001000

Generated: 05/18/2015 at 01:49 AM