ID:

dmo_2043

 Coordinate:

scaffold_6540:23591633-23591783 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.5 -9.2 -9.1

Flybase annnotation

exon [dmoj_GLEANR_7723:4]; CDS [Dmoj\GI22512-cds]; intron [Dmoj\GI22512-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACAAAAACAAAGCTGTTTAACTGTTGTTTCCCACTACTCTACCCCCCCTCTCTACTTGCCGCCCAACTGCAACAACAATACATACGACAGCTACTGCAACAGCAACAGCAGCAACAACTACAAAAGGTGCGCCACACTCAAAACGCAGCAACAGCAACAAATCCACAACAACAACAGCAGCAGCAACAACGACAACAACAGCAAGTCATAACAACAACAACAGCAGCAATAAGCAGAACAAAAACACGCTG
*******************************************************************(((...................(((..(((....)))..)))..................((((............))))((....)).....................)))..********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V041
embryo
..........................................................................................................................AAAGGTTCGCCCCACTCAA.............................................................................................................. 19 2 1 18.00 18 18 0 0
...........................................................................................................................AAGGTTCGCCCCACTCAA.............................................................................................................. 18 2 1 6.00 6 6 0 0
..........................................................................................................................AAAGGTTCGCCCCACTCA............................................................................................................... 18 2 3 1.67 5 5 0 0
...........................................................................................................................................................................................AACGACAACAACAGCAAGTCATAAC....................................... 25 0 1 1.00 1 1 0 0
..........................................................................................................................AAAGGTTCGCCCCACTCAAG............................................................................................................. 20 3 3 1.00 3 3 0 0
..........................................................................................................................................................CAACAAATCCACAACAACAACAGCAGC...................................................................... 27 0 1 1.00 1 0 1 0
...................................................................TGCAACAACAATACATACGACAG................................................................................................................................................................. 23 0 1 1.00 1 0 1 0
..........................................................................................................................AAAGGTTCGCCACACTCAAGT............................................................................................................ 21 3 4 0.25 1 1 0 0
...........................................................................................................................AAGGTTCGCCCCACTCAAG............................................................................................................. 19 3 5 0.20 1 1 0 0
.........................................................................................................................GAAAGGTTCGCCCCACTCA............................................................................................................... 19 3 11 0.09 1 1 0 0
.....................................................................................................................................................................CAACAACAACAGCAGCAGCAACA............................................................... 23 0 20 0.05 1 0 0 1

Anti-sense strand reads

TGTTTTTGTTTCGACAAATTGACAACAAAGGGTGATGAGATGGGGGGGAGAGATGAACGGCGGGTTGACGTTGTTGTTATGTATGCTGTCGATGACGTTGTCGTTGTCGTCGTTGTTGATGTTTTCCACGCGGTGTGAGTTTTGCGTCGTTGTCGTTGTTTAGGTGTTGTTGTTGTCGTCGTCGTTGTTGCTGTTGTTGTCGTTCAGTATTGTTGTTGTTGTCGTCGTTATTCGTCTTGTTTTTGTGCGAC
**********************************************************************(((...................(((..(((....)))..)))..................((((............))))((....)).....................)))..******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V110
male body		 V049
head
 M046
female body
 V056
head
........................................................................................................................GTTTTCCACTTGGTGTGACTTT............................................................................................................. 22 3 1 1.00 1 0 1 0 0
...........................................................................................................................TTCCAAGCGGGGTGAGTTC............................................................................................................. 19 3 5 0.60 3 3 0 0 0
..................................ATGAGATGGTGGGGAGAGG...................................................................................................................................................................................................... 19 2 4 0.50 2 0 0 0 2
.........................................................................................................................ATTTCCAAGCGGGGTGAGTT.............................................................................................................. 20 3 5 0.20 1 1 0 0 0
............................................................................................................................TCCAAGCGGGGTGAGTTC............................................................................................................. 18 3 20 0.20 4 0 1 3 0
.......................ACCAGTGGGTGATGAGATG................................................................................................................................................................................................................. 19 3 5 0.20 1 1 0 0 0
.......................AACAGTGGGTGATGTGATG................................................................................................................................................................................................................. 19 3 14 0.14 2 1 0 1 0
.......................ACCAGAGGGTGATGTGATG................................................................................................................................................................................................................. 19 3 9 0.11 1 1 0 0 0
.........................................................................................................................ATTTCCAAGCGGGGTGAGT............................................................................................................... 19 3 10 0.10 1 0 0 1 0
........................CCAGTGGGTGATGAGATG................................................................................................................................................................................................................. 18 3 20 0.10 2 2 0 0 0
...........................................................................................................................................................................GTTGTCGTCGTCGTTGTTGCTGTTG....................................................... 25 0 14 0.07 1 0 0 1 0
...........................................................................................................................................................................GTTGTCGTCGTCGTTGTTGCTGTTGT...................................................... 26 0 14 0.07 1 0 0 1 0
...........................................................................................................................................................................GTTGTCGTCGTCGTTGTTGCTGTT........................................................ 24 0 16 0.06 1 0 0 1 0
...........................................................................................................................................................................GTTGTCGTCGTCGTTGTTGCTGT......................................................... 23 0 19 0.05 1 1 0 0 0
..........................AAATGGTGATTTGATGGGG.............................................................................................................................................................................................................. 19 3 19 0.05 1 0 0 1 0
....................................................................................................................AGATGTTTTCCGTGCGGTG.................................................................................................................... 19 3 20 0.05 1 1 0 0 0
.......................................................................................................................................................................................GTTGTTGCTGTTGTTGTCGT................................................ 20 0 20 0.05 1 1 0 0 0
..................................................................................................TGTCGTTGTCGTCGTTGTTAA.................................................................................................................................... 21 1 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:23591583-23591833 - dmo_2043 ACAAAAACAA--AGCTG-TTTA--ACTGTTGTTTCCCACTACTCTACCCCC-CCTCTCTACTT--GCCGCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGCAACAA------------------CAATACATACG------------ACAGCTA---------------------------CTG-CAA------------------CAGCA---------------------------------------------------------------------ACAGCAGCAACAACTACAAAAGGTGCGCCACACTCAAA-ACGCAGCAACAG---C-AAC--------------------AAA--------------------TC---CAC---------------A----------------------------------------------------------------------------------------------ACAACAACAGCAGCAGCAACAAC---------------GA-------------CAACA--------------------------------------------------ACAGCAA-----GTCA------TAACAACAACAACAGC-------AGCA------ATA---AGCAGAACAAAAACA----------------CG------CTG-------------------
droVir3 scaffold_12855:8373803-8374025 - AGC------------TG-TTTA--ACTGTTGTCTCCCACTACTCTACCCCCC--TCTCTACTT--GCCGCCCAACGACA-ACAAACGCACAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAAGCAACAACAA------CAACAGACGCA------------ACAA----------------------------------------------------------------------------------------------------------------------------------------------------AAGGTGCGCCACACTCAAA-ACGCAGCAG---CAGC------AACAACAGCAGCGGCAACAAA--------------------CA---TAC----------------------------------------------------------------------------------------------------------------------------------AAC---------------AA-------------CAACA--------------------------------------------------ACAACAA-----CTC---AGAAC------AACAACAGCA-AC---AGCA------A------AGCGAACAAAAACA----------------CG------CTG-------------------
droGri2 scaffold_15074:4968946-4969182 - GAAACAAAG-----CTG-TTTA--ACTGTTGTCTCCCACTACTCTACCCCCC--TCTCTACTTGTGCCGCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACAACAACAACAGCAG---CAGCTGCGCCACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCAAA-TCGCAGCCA---CAGCA---AACGCAACAGCAGCAGCAACAAA--------------------CA---CAC---------------AAC---AGCAACAACA-----------------AACACCCACAGCAACAACAATAAT-------AATAACAACA---------------------------------------------------------------------------------------------------------------------------------GCAACAA------------CAAC------AACAACAGTA-------GCA------GCA---AACCGAACAAAAACA----------------CG------CTG-------------------
droWil2 scf2_1100000004511:6712217-6712450 - ACAACAACAAC-AACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------TATTTCAACAACAACAA----------------C--------------AATTACAACAACA------A---CAACAACAACAAAAATT---------ACAACAACAACA------------ACAACAAAAATTACAA-C--------------------------------------------------------------------------------------------------------------------------------------------AACAA---C-AAC--------------------A--AGAGTTACAA--CAACA---------------ACAACAATTACAAC-------------------------AAC-----------------AACAACAAA-------AATT---------------------------AC------------------AAC-------------------------AACAAC---AACAACA--------AA--------AATTA-------------------CAACAACAA-----CAA----AAAT------TACAACAACAA-CAACAACA------AAA---A---T-------------TACAACAACAACAAG------------------------AATT
dp5 XR_group6:3580739-3580958 - TTAAAAATGG--AGCAGT-TT-----------TTACCAAAACACAGCCCAC-------------------------------------------------------------------------------------------------------------------------------------------GCCCCCCATAACCATCGAGAAGAAAAGACAGA--ACCAG--------------------------------------------------------------CAGCAACAGCATCAGCAG---CAGTATCAGCATGCACA---------CCTGCAACAC---------------CAGC----------------------------------------------------------------------------------AGCAGCAGCAGCAGCAACAACAACAACAGCGGCAGCA--------------------------------------------------------------------------------------------------------------------GCA-------------------------ACAACAGCAGCAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAA------------CAGC------AGCAGCAGCA-------GCA------ACAAAAC----------AGCG----------------CG------CAG-----------------AA
droPer2 scaffold_20:731980-732215 - GCCTTGGTCA--AGCTGC-TGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------GTCG-------------GCGCCCCTC----C--------------ACAAGCAGCAGCAGCAGCAACAG------CAGCAGCCACC------------GCAACGCAA------------AAGACT--------------------------------GAAAA------------------------------------------------------------------------------------------------------------ACGAGGCAGCAA---T-CGT--------------------G--C---------CACACCA--------CACACCTGCAGCAAGCCC------AGCAAAGACAACCACCAACAGCAAC-----------------AGCAACA----------AA---------A----------------------------------------------------------ACAGCAACAGCAAC---AGCAACA--------ACAACAACCA------------------------TAGTATTA--------------GTC------A---GCAACA-------GCA------GCA---G----------ATCG----------------TGCTG-CTCCT-------------------
droAna3 scaffold_13117:4522586-4522791 - CATA-AACGT--TGCAAT-CG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCCAAAGTCGCAGCAGCATCAG---------------------------------TAGCAACAGCAGCAGCATCAG------CAGCAGCAACA---------GCAGCAGCA-------------------------------------------------------------------------------------------------------------------------------GCGGCGGAAGCA--------------------------GAAGCGGTAGCAT---C-AAC--------------------G--C--------------------T---ACC---------------A---------------------------------------------------ACAAC-------AACATCAACAATA---------------ACAACAACAACAACAACAACAACAAC---------------AA-------------CAA--------------------------------------------------TAGCAACAG-----CCGA----AAT---------------A-------GCA------GCA---G----------CTCGAAAAGCAG----------------CAG-------------------
droBip1 scf7180000396641:582562-582802 + GCAAATGCAAG-TGCCG-CCTACGTCGGTTGC-TCCTACAA---------------------------------T---GCAACAACCCATGGCGCAGACGTACCAAC-----------------------------------------------------------------------------------------------------------------------------------------------AGCCTCAAGTGTC------------ACTATCGGACCCCCAACAGCAACAACATCAACAG---CAGCAGCAACATG----------------GTGGCTT----------------------C-----------GCAACTGTGCCGGCACAG------------CAACC-----------------------------------------------------------------------------------------------------------A---C-AAT--------------------T----------------------CA---TAC---------------A----------------------------------------------------------------------------------------------ACAGCAACAGCCCCAGCAGCAAC---------------CT-------------ATACA-----------------------A------------------------CTGTCC-CT-----GCCTTTGGAAC------AACAACTGCA-GCAAT-----------------------------------------------TG------CTG-------------------
droKik1 scf7180000302698:174936-175147 - GTAAAGACCAT-GT-----TCA--TATCTTGTTTG-GACT-----------------------GTG----------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAAGCAACAGCAACAGCAATAG------AAACAGCAACAGCAGCA------GCAAC------------------AACGGCAACAACAG-C---------------------------------------------------------------------AGCAGC---------------------AGCAAC-----------------------------------------------------------------------AGA--------------------AA--------------CAGCCCCAAC----------------------------------------------------------------AGCAGCACCA---------------ACATCCACAGCAATAACAACTACAGC---------------AA-------------TAG--------------------------------------------------CAGCACCAA-----CTT----AAAT------GACAGCAGCAA-TATCTGCA------ACA---A---G-------------TGCAA----------------CCA-------------------
droFic1 scf7180000454059:584886-585123 + ACAGCAACAAA-TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGAGCA--------------------------------------------------GCTGGCAGAACTCCTCAAGCAACAACAGCAGCAACAG------CAGCAAACACA------------GCAGCAA-A------------CAAGCAGCA-----------GCAAC-----------------------------------------------------------------------------------------TGT-----------------------------------------------G------GC------------------A--A------CAC---AACGACAAACAATTGACCAACAGCAACCACAGC-------------------------AAC-----------------AGCAACA----------AA---------T----------------------------------------------------------TCAACCACAGCAAC---AGCAACA--------AA--------TTCAA-------------------GAGCAGCTGGGAGAACTCCTAAAGC------AACAGCAGCAG-CAACAGCA------GCA---A---A-------------CACAGCAA-----CG------ACA-------------------
droEle1 scf7180000491023:493606-493854 + ACAACAATAT--AGCAAT-AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACG--------------------------------------------------------GCAATGGCA------A---CAACAACATAACA---------AGCAAATGCAACAACAATATCTGACATACCAATAACAACAGCAG-CAG------------------C------------------------------------------------------------------AATATTTGCAGCAAC---A------AAAGCAACATCGGGCCCATAAGAGCAACAACAG---C-AAC--------------------A----------------------CT---AGC---------------A----------------------------------------------------------------------------------------------ACAGCAACAGCAACAGCAACGGC---------------AA-------------CAGCA--------------------------------------------------ACAGCAAC----ATCAACGGGGC------AACAACAACA-GCAAC--CG------GCA---AGCTGTACTTGAACA----------------AG------TCG-------------TACTTG
droRho1 scf7180000779985:553006-553232 - ACAATTACAAA-AT-GCATTTA--ACTACCAC-----------------------------------------------------------------------------------------------------------------------------------------------ATCGAGCAATTCAACGGCATCTAATG-----------------------------------------------------------------------------------------CCAACAATAATAACAACAACAA---CACCACCA---A------------CAACAACAACA------------CAAGCAGCA-------------------------------------------------------------------------------------------------------------ACAACA--------------------------------------ACA------AC------------------A--A------CAC--GAGCAACACA---AATG------------GCAGC-------------------------AGC-----------------AACAACA----------CG---------AGCG---------------GCAACAACAA-------------------------------------------C---AGCAACA--------A---------------------------------CAACAACAA-----CAG----TAGT------GGCAACAACA-ACAGCA---------A------CACAG-----ATCA----------------AAATA-CACCA-------------------
droBia1 scf7180000302402:3509009-3509264 - ATGAAGATGAG-G--AGC-TG---------------------------------------------------------------------------------------------------------------CAGCCGCGGCAT---------------------------------TGTTAATGGCAATGGC-----------------------------------------------------CG-------------CCGTGCGGTTGACC------------ACAACAATAACCACAATATCAG---CAG-------------G------------ATGGCCG---------------------------CAGTCCA------------------CAGCAGCAGCAGCAACCACAACACCAACAATCGCCACAGTTACAGCAGCAACATC---------------------AGC------------------------------------------------------------------------------------------------------------------------A--AGA-------------------------GCAACAGCCACTGCAGCAGCAGCAGC-------AACTGCCGCATCA---------------GCAACATCAACAACCGCCTC---------------------------------------------------------------------------------------------------------------------------CGCAGCGG-CATTAGCA------TTA---G---G-------------AACAGCAA-----CT------TGG-------------------
droTak1 scf7180000415261:505834-506037 + AAATCAAG------CTG-TT-A--ACTGTTGTCTCCCACTACTCTCTCTCTCTCTCTCTACTC--CC---TCAAC---CCACCATTCTCTCTCACTTACACACCACCCTCCACCCCACACTTGACTCGTAA-------------------------------------------------------------------------------AGGA-----------------------------------------------------------------------------GAGGAACAACAACCACAT-CG------TGCCAGCAACA--------------------------------------------------------------CCGTTAAAA------------CAACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------------------------------AAA---------------------------------------------------------------------------------------------------------ACAA-------------------------CACACCAGCGG-CAGCAGCA------GGA---A---A-------------CACCA--------CA------AAG-------------------
droEug1 scf7180000409095:99771-100036 + ACAAAAAAGG--GGCGG-------------------------------------------------------------------------------------------------------------------CCACCTCGACTTATGTATTGTATATAATGTTTCTAGGTCAAATGTCGAGCAGTC-ACT-------GGTG------------------------------------------------------------------------------------------CAACAACAACAACAGCAACAA------CAACAGACACA------------ACAGCAA---------------------------CAG-ACA------------------CAACAACAACAGC---------------------------------------------------------------AAC-----------------------------------------------A------AC------------------G--A------CACCAGAACAGCACA---TTTAACAGCAACAACAACAAC-------------------------A--ACAACAGCC------------AT------------G---------CACC---------------------------------ACAGCAACACTCTTCACCAA--ACAA--------------------CCAAAACAATA-----------ACAGCCACCACCATCATCATCAGCA----------------------------------------------------A------------------CA----------------TG------CCT----------------TAG
dm3 chr3R:13956556-13956797 + ACAACAACAAT-TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAATCACCACCATCATCACC--------------------------------------------------------ATCACCA------C---CACCACCATCACA---------GTCAGCTACAACAACT------------CCAACAACAACAGCAA-CAA------------------C------------------------------------------------------------------AACAACAACAGCAGCAACA--------------------------------------------------------------------------------------------------------------------CCA-------------------------ACAACAGCCGCTACACCAACAACAAC-------AACTGCAACACCA---------------GCAACAGCAACAACACCACCAACAAC---------------AC-------------TAT--------------------------------------------------CAACAACAT-----GCCA----TTCAACACCAGCAA-------------------------------T----------CACAACAG----------------CAGGCTAGCAAAATCTCATATC
droSim2 x:11980850-11981094 - GCATGAAATGGAAGCAGC-TAT-------ACGCTC-CACT-----------------------TCA----------------------------------------------------------------GT-------------------------------------------GCA------------G-----------------------------------------------------GTCG-------------GTGCTCCGCCGCCC--------------ACAAACAACAACAGCAGCAGCAG---CAGCAACA---G------------CAACAACAACA------------CTAGCAACAATAACAA-C---------------------------------------------------------------------AATAGC---------------------AGCAAC--------------------------------------AG---CG------GCAGCAACAGCAGCAGCAAC-------------------------------------------------------------------------------------------------AACACACCAAACGGTG---------CGCAGCAGCA------GCAGCAGCAACAACACCATC------------------------------------------------------------------------------------------------A---------------GC------AGCAGCAGCA-GC---AGCATCATCAG-------------------------CAGCAACG---TGTTGTTGCCA-------------------
droSec2 scaffold_12:200508-200746 - ACAACAACAAT-TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAATCACCACCATCATCACC--------------------------------------------------------ATCACCA------C---CACCACCATCACA---------GTCAGCTACAACAACT------------CCAACAACAACAGCAA-CAA------------------C------------------------------------------------------------------AACA---ACAGCAGCAACA--------------------------------------------------------------------------------------------------------------------CCA-------------------------ACAACAGCCGCTACACCAACAACAGC-------AACTGCAACACCA---------------GCAGCAGCAACAACACCACCAACAAC---------------AC-------------TAT--------------------------------------------------CAGCAACAT-----GCCA----TTCAACACCAGCAA-------------------------------T----------CACAACAG----------------CAGGCTAGCAAAATCTCATATC
droYak3 X:14589494-14589759 - ACAAAAAAGG--GGCGG-------------------------------------------------------------------------------------------------------------------TCACCTCGACTTATGTATTGTATATAATGTTTCTAGGTCAAATGTCGAGCAGTC-ACT-------GGTG------------------------------------------------------------------------------------------CAACAACAACAACAACAACAACAACAGCAACAGACACA------------ACAACAA-------------------------------------------------------------------------------------------------------CCGC---------------------AACAAC---A--------------------------------------ACA------AC------------------G--A------CACCAGAACAGCACA---TTTA---AC---------------------A---------------------ACAACC------------AT------------G---------CACC---------------------------------ACAGCAACACTCTTCACCCA--ACAA--------------------CCAGACCACTA-----------GTAGC---------------CACCATCAT-----CAT----CATC------CACAACAACAG-CATCAACA------ACA---A---C-------------CACAGCA------TG------CCT-------------------
droEre2 scaffold_4690:14226176-14226421 + GCATGAAATGGAAGCAGC-TAT-------ACGCTC-CACT-----------------------TCA----------------------------------------------------------------GT-------------------------------------------GCA------------G-----------------------------------------------------GTCG-------------GTGCTCCGCCGCCC--------------ACAAACAACAACAGCAGCAGCAGCAGCAGCAACAAC---------AATAACAACAACAACA------------CTAGCAACAATAACAA-CAA------------------C------------------------------------------------AATAGC---------------------AGCAGC--------------------------------------AG---CA------GCAACAACAGCAGCAGCAAC----------------------------------------------------------A---------------------AC------------AATAACACACCAAACGGCG---------CGCAGCAGCAGCAGCAGCAACAACAACAACACCTTC---------------------------------------------------------------------------------------------------------------AGC------AGCAGCAGCA-GCATCA---------G---------------------------------------------CA-------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ACAAAAACAA--AGCTG-TTTA--ACTGTTGTTTCCCACTACTCTACCCCC-CCTCTCTACTT--GCCGCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTGCAACAA------------------CAATACATACG------------ACAGCTA---------------------------CTG-CAA------------------CAGCA---------------------------------------------------------------------ACAGCAGCAACAACTACAAAAGGTGCGCCACACTCAAA-ACGCAGCAACAG---C-AAC--------------------AAA--------------------TC---CAC---------------A----------------------------------------------------------------------------------------------ACAACAACAGCAGCAGCAACAAC---------------GA-------------CAACA--------------------------------------------------ACAGCAA-----GTCA------TAACAACAACAACAGC-------AGCA------ATA---AGCAGAACAAAAACA----------------CG------CTG-------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------------GA-------------CAACA--------------------------------------------------ACAGCAA-----GTCA------TAAC................................................................................................2511.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AAC--------------------AAA--------------------TC---CAC---------------A----------------------------------------------------------------------------------------------ACAACAACAGCAGC........................................................................................................................................................................................................................2711.001000010
....................................................................................................................................................................................................................................................................................................TGCAACAA------------------CAATACATACG------------ACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------A----------------------------------------------------------------------------------------------ACAACAACAGCAGCAGCAACA.................................................................................................................................................................................................................23200.051010000
droVir3
AGC------------TG-TTTA--ACTGTTGTCTCCCACTACTCTACCCCCC--TCTCTACTT--GCCGCCCAACGACA-ACAAACGCACAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAAGCAACAACAA------CAACAGACGCA------------ACAA----------------------------------------------------------------------------------------------------------------------------------------------------AAGGTGCGCCACACTCAAA-ACGCAGCAG---CAGC------AACAACAGCAGCGGCAACAAA--------------------CA---TAC----------------------------------------------------------------------------------------------------------------------------------AAC---------------AA-------------CAACA--------------------------------------------------ACAACAA-----CTC---AGAAC------AACAACAGCA-AC---AGCA------A------AGCGAACAAAAACA----------------CG------CTG-------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................CAAAAGCAACAACAA------CAACAGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTCAAA-ACGCAGCAG---...............................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
...................TTA--ACTGTTGTCTCCCACTACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
................G-TTTA--ACTGTTGTCTCCCACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................CA------------ACAA----------------------------------------------------------------------------------------------------------------------------------------------------AAGGTGCGCCACACTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCA-AC---AGCA------A------AGCGA.......................................................2230.331000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................CAACAA------CAACAGACGCA------------AC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.251000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAGC------AACAACAGCAGCGGC......................................................................................................................................................................................................................................................................................................................................................................................2240.251000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------AACAACAGCA-AC---AGCA------A------AG..........................................................2270.141000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---TAC----------------------------------------------------------------------------------------------------------------------------------AAC---------------AA-------------CAACA--------------------------------------------------ACAACAA-----C.............................................................................................................23200.102001100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAC------AACAACAGCA-AC---AGC..........................................................................19140.071000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAGCAG---CAGC------AACAACA..............................................................................................................................................................................................................................................................................................................................................................................................20140.071000000000000000000000000000000000000000000000000000000000000100
droGri2
GAAACAAAG-----CTG-TTTA--ACTGTTGTCTCCCACTACTCTACCCCCC--TCTCTACTTGTGCCGCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACAACAACAACAGCAG---CAGCTGCGCCACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCAAA-TCGCAGCCA---CAGCA---AACGCAACAGCAGCAGCAACAAA--------------------CA---CAC---------------AAC---AGCAACAACA-----------------AACACCCACAGCAACAACAATAAT-------AATAACAACA---------------------------------------------------------------------------------------------------------------------------------GCAACAA------------CAAC------AACAACAGTA-------GCA------GCA---AACCGAACAAAAACA----------------CG------CTG-------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------CAAC------AACAACAGTA-------GCA------GCA---.............................................................21190.05110
droWil2
ACAACAACAAC-AACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------TATTTCAACAACAACAA----------------C--------------AATTACAACAACA------A---CAACAACAACAAAAATT---------ACAACAACAACA------------ACAACAAAAATTACAA-C--------------------------------------------------------------------------------------------------------------------------------------------AACAA---C-AAC--------------------A--AGAGTTACAA--CAACA---------------ACAACAATTACAAC-------------------------AAC-----------------AACAACAAA-------AATT---------------------------AC------------------AAC-------------------------AACAAC---AACAACA--------AA--------AATTA-------------------CAACAACAA-----CAA----AAAT------TACAACAACAA-CAACAACA------AAA---A---T-------------TACAACAACAACAAG------------------------AATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
TTAAAAATGG--AGCAGT-TT-----------TTACCAAAACACAGCCCAC-------------------------------------------------------------------------------------------------------------------------------------------GCCCCCCATAACCATCGAGAAGAAAAGACAGA--ACCAG--------------------------------------------------------------CAGCAACAGCATCAGCAG---CAGTATCAGCATGCACA---------CCTGCAACAC---------------CAGC----------------------------------------------------------------------------------AGCAGCAGCAGCAGCAACAACAACAACAGCGGCAGCA--------------------------------------------------------------------------------------------------------------------GCA-------------------------ACAACAGCAGCAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAA------------CAGC------AGCAGCAGCA-------GCA------ACAAAAC----------AGCG----------------CG------CAG-----------------AASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................ACACAGCCCAC-------------------------------------------------------------------------------------------------------------------------------------------GCCCCCCATAACCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.................................................................................................................................................................................................................................CCAG--------------------------------------------------------------CAGCAACAGCATCAGCAG---CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAACAACAGCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA-------GCA------ACAAAAC----------AGCG----------------CG------......................2211.0010000100000
............................................................................................................................................................................................................................................................................................................CATCAGCAG---CAGTATCAGCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...................................................................................................................................................................................................................GAAAAGACAGA--ACCAG--------------------------------------------------------------CAGCAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000001
....................................................................................................................................................................................................................................................................................................................G---CAGTATCAGCATGCACA---------CCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................GACAGA--ACCAG--------------------------------------------------------------CAGCAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................GAGAAGAAAAGACAGA--ACCAG--------------------------------------------------------------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAACAACAGCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAACAACAACAGCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAACAGCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000000
..........................................................................................................................................................................................................................CAGA--ACCAG--------------------------------------------------------------CAGCAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000001
....................................................................................................................................................................................................................................................................................................................................................TGCAACAC---------------CAGC----------------------------------------------------------------------------------AGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAGCGGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCGGCAGCA--------------------------------------------------------------------------------------------------------------------GC................................................................................................................................................................................................................................................................................................................................19120.0810010000000
....................................................................................................................................................................................................................................................................................................AGCAACAGCATCAGCAG---CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19150.0710100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAA------------CAGC------AGCAGCAGC....................................................................................27150.0710000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAA------------CAGC------A............................................................................................25170.0610000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA------------CAGC------AGCAGCAGCA-------GCA------...................................................................22200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAACAACAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA--------------------------------------------------------------------------------------------------------------------GCA-------------------------ACAACAGCAGCAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------G.........................................................................................................................24200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................CAACAC---------------CAGC----------------------------------------------------------------------------------AGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAA------------CAGC------A............................................................................................19200.0510000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAA------------CAGC------AGCAGCAG.....................................................................................19200.0510000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------------------------------------------------------------------------------------------------------------------GCA-------------------------ACAACAGCAGCAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------..........................................................................................................................20200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAACAACAACAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAA------------CAGC------AGCA.........................................................................................24200.0510000100000
droPer2
GCCTTGGTCA--AGCTGC-TGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------GTCG-------------GCGCCCCTC----C--------------ACAAGCAGCAGCAGCAGCAACAG------CAGCAGCCACC------------GCAACGCAA------------AAGACT--------------------------------GAAAA------------------------------------------------------------------------------------------------------------ACGAGGCAGCAA---T-CGT--------------------G--C---------CACACCA--------CACACCTGCAGCAAGCCC------AGCAAAGACAACCACCAACAGCAAC-----------------AGCAACA----------AA---------A----------------------------------------------------------ACAGCAACAGCAAC---AGCAACA--------ACAACAACCA------------------------TAGTATTA--------------GTC------A---GCAACA-------GCA------GCA---G----------ATCG----------------TGCTG-CTCCT-------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................GC-TGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------GTCG-------------GCGCCCCTC----C--------------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100
..............................................................................................................................................................................................................................................................................................................GCAGCAACAG------CAGCAGCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20100.101010000
droAna3
CATA-AACGT--TGCAAT-CG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCCAAAGTCGCAGCAGCATCAG---------------------------------TAGCAACAGCAGCAGCATCAG------CAGCAGCAACA---------GCAGCAGCA-------------------------------------------------------------------------------------------------------------------------------GCGGCGGAAGCA--------------------------GAAGCGGTAGCAT---C-AAC--------------------G--C--------------------T---ACC---------------A---------------------------------------------------ACAAC-------AACATCAACAATA---------------ACAACAACAACAACAACAACAACAAC---------------AA-------------CAA--------------------------------------------------TAGCAACAG-----CCGA----AAT---------------A-------GCA------GCA---G----------CTCGAAAAGCAG----------------CAG-------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................AG---------------------------------TAGCAACAGCAGCAGCATCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.....................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCATCAG------CAGCAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2920.501010000
......................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCATCAG------CAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2290.222000002
..............................................................................................................................................................................................................................................................................................................GCAGCATCAG------CAGCAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.152200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAACAACAACAAC---------------A...............................................................................................................................................................................................24200.102020000
......................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCATCAG------CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000011
........................................................................................................................................................................................................................................................................................................ACAGCAGCAGCATCAG------CAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.091000001
...................................................................................................................................................................................................................................................................................................................ATCAG------CAGCAGCAACA---------GCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.081010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAAC---------------AA-------------CAA--------------------------------------------------TAGCA.......................................................................................................................22140.071100000
....................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCATCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19170.061000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAAC---------------AA-------------CAA--------------------------------------------------TA..........................................................................................................................23200.051010000
.......................................................................................................................................................................................................................................................................................................................G------CAGCAGCAACA---------GCAGCAGCA-------------------------------------------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA---------------ACAACAACAACAACAAC........................................................................................................................................................................................................................19200.051010000
.....................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCATCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATA---------------ACAACAACAACAACAACA.......................................................................................................................................................................................................................22200.051010000
droBip1
GCAAATGCAAG-TGCCG-CCTACGTCGGTTGC-TCCTACAA---------------------------------T---GCAACAACCCATGGCGCAGACGTACCAAC-----------------------------------------------------------------------------------------------------------------------------------------------AGCCTCAAGTGTC------------ACTATCGGACCCCCAACAGCAACAACATCAACAG---CAGCAGCAACATG----------------GTGGCTT----------------------C-----------GCAACTGTGCCGGCACAG------------CAACC-----------------------------------------------------------------------------------------------------------A---C-AAT--------------------T----------------------CA---TAC---------------A----------------------------------------------------------------------------------------------ACAGCAACAGCCCCAGCAGCAAC---------------CT-------------ATACA-----------------------A------------------------CTGTCC-CT-----GCCTTTGGAAC------AACAACTGCA-GCAAT-----------------------------------------------TG------CTG-------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GTAAAGACCAT-GT-----TCA--TATCTTGTTTG-GACT-----------------------GTG----------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAAGCAACAGCAACAGCAATAG------AAACAGCAACAGCAGCA------GCAAC------------------AACGGCAACAACAG-C---------------------------------------------------------------------AGCAGC---------------------AGCAAC-----------------------------------------------------------------------AGA--------------------AA--------------CAGCCCCAAC----------------------------------------------------------------AGCAGCACCA---------------ACATCCACAGCAATAACAACTACAGC---------------AA-------------TAG--------------------------------------------------CAGCACCAA-----CTT----AAAT------GACAGCAGCAA-TATCTGCA------ACA---A---G-------------TGCAA----------------CCA-------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ACAGCAACAAA-TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGAGCA--------------------------------------------------GCTGGCAGAACTCCTCAAGCAACAACAGCAGCAACAG------CAGCAAACACA------------GCAGCAA-A------------CAAGCAGCA-----------GCAAC-----------------------------------------------------------------------------------------TGT-----------------------------------------------G------GC------------------A--A------CAC---AACGACAAACAATTGACCAACAGCAACCACAGC-------------------------AAC-----------------AGCAACA----------AA---------T----------------------------------------------------------TCAACCACAGCAAC---AGCAACA--------AA--------TTCAA-------------------GAGCAGCTGGGAGAACTCCTAAAGC------AACAGCAGCAG-CAACAGCA------GCA---A---A-------------CACAGCAA-----CG------ACA-------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ACAACAATAT--AGCAAT-AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACG--------------------------------------------------------GCAATGGCA------A---CAACAACATAACA---------AGCAAATGCAACAACAATATCTGACATACCAATAACAACAGCAG-CAG------------------C------------------------------------------------------------------AATATTTGCAGCAAC---A------AAAGCAACATCGGGCCCATAAGAGCAACAACAG---C-AAC--------------------A----------------------CT---AGC---------------A----------------------------------------------------------------------------------------------ACAGCAACAGCAACAGCAACGGC---------------AA-------------CAGCA--------------------------------------------------ACAGCAAC----ATCAACGGGGC------AACAACAACA-GCAAC--CG------GCA---AGCTGTACTTGAACA----------------AG------TCG-------------TACTTGSizeHit CountTotal NormTotal
No Reads
droRho1
ACAATTACAAA-AT-GCATTTA--ACTACCAC-----------------------------------------------------------------------------------------------------------------------------------------------ATCGAGCAATTCAACGGCATCTAATG-----------------------------------------------------------------------------------------CCAACAATAATAACAACAACAA---CACCACCA---A------------CAACAACAACA------------CAAGCAGCA-------------------------------------------------------------------------------------------------------------ACAACA--------------------------------------ACA------AC------------------A--A------CAC--GAGCAACACA---AATG------------GCAGC-------------------------AGC-----------------AACAACA----------CG---------AGCG---------------GCAACAACAA-------------------------------------------C---AGCAACA--------A---------------------------------CAACAACAA-----CAG----TAGT------GGCAACAACA-ACAGCA---------A------CACAG-----ATCA----------------AAATA-CACCA-------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATGAAGATGAG-G--AGC-TG---------------------------------------------------------------------------------------------------------------CAGCCGCGGCAT---------------------------------TGTTAATGGCAATGGC-----------------------------------------------------CG-------------CCGTGCGGTTGACC------------ACAACAATAACCACAATATCAG---CAG-------------G------------ATGGCCG---------------------------CAGTCCA------------------CAGCAGCAGCAGCAACCACAACACCAACAATCGCCACAGTTACAGCAGCAACATC---------------------AGC------------------------------------------------------------------------------------------------------------------------A--AGA-------------------------GCAACAGCCACTGCAGCAGCAGCAGC-------AACTGCCGCATCA---------------GCAACATCAACAACCGCCTC---------------------------------------------------------------------------------------------------------------------------CGCAGCGG-CATTAGCA------TTA---G---G-------------AACAGCAA-----CT------TGG-------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAATCAAG------CTG-TT-A--ACTGTTGTCTCCCACTACTCTCTCTCTCTCTCTCTACTC--CC---TCAAC---CCACCATTCTCTCTCACTTACACACCACCCTCCACCCCACACTTGACTCGTAA-------------------------------------------------------------------------------AGGA-----------------------------------------------------------------------------GAGGAACAACAACCACAT-CG------TGCCAGCAACA--------------------------------------------------------------CCGTTAAAA------------CAACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------------------------------AAA---------------------------------------------------------------------------------------------------------ACAA-------------------------CACACCAGCGG-CAGCAGCA------GGA---A---A-------------CACCA--------CA------AAG-------------------SizeHit CountTotal NormTotal
No Reads
droEug1
ACAAAAAAGG--GGCGG-------------------------------------------------------------------------------------------------------------------CCACCTCGACTTATGTATTGTATATAATGTTTCTAGGTCAAATGTCGAGCAGTC-ACT-------GGTG------------------------------------------------------------------------------------------CAACAACAACAACAGCAACAA------CAACAGACACA------------ACAGCAA---------------------------CAG-ACA------------------CAACAACAACAGC---------------------------------------------------------------AAC-----------------------------------------------A------AC------------------G--A------CACCAGAACAGCACA---TTTAACAGCAACAACAACAAC-------------------------A--ACAACAGCC------------AT------------G---------CACC---------------------------------ACAGCAACACTCTTCACCAA--ACAA--------------------CCAAAACAATA-----------ACAGCCACCACCATCATCATCAGCA----------------------------------------------------A------------------CA----------------TG------CCT----------------TAGSizeHit CountTotal NormTotal
No Reads
dm3
ACAACAACAAT-TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAATCACCACCATCATCACC--------------------------------------------------------ATCACCA------C---CACCACCATCACA---------GTCAGCTACAACAACT------------CCAACAACAACAGCAA-CAA------------------C------------------------------------------------------------------AACAACAACAGCAGCAACA--------------------------------------------------------------------------------------------------------------------CCA-------------------------ACAACAGCCGCTACACCAACAACAAC-------AACTGCAACACCA---------------GCAACAGCAACAACACCACCAACAAC---------------AC-------------TAT--------------------------------------------------CAACAACAT-----GCCA----TTCAACACCAGCAA-------------------------------T----------CACAACAG----------------CAGGCTAGCAAAATCTCATATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACAG----------------CAGGCTAGCAAAATC.......2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................ACCA------C---CACCACCATCACA---------GTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................A-CAA------------------C------------------------------------------------------------------AACAACAACAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------GCAACAGCAACAACACCA.......................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................A------------------C------------------------------------------------------------------AACAACAACAGCAGCAACA--------------------------------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................GCAA-CAA------------------C------------------------------------------------------------------AACAACAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAA-CAA------------------C------------------------------------------------------------------AACAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCA---------------GCAACAGCAACAACA..........................................................................................................................................................................................................................20100.1010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................ATCATCACC--------------------------------------------------------ATCACCA------C---CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAA-CAA------------------C------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAA-CAA------------------C------------------------------------------------------------------AACAACAACAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................CAGCAA-CAA------------------C------------------------------------------------------------------AACAACAACAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................26130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAA-CAA------------------C------------------------------------------------------------------AACAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................25130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................AA-CAA------------------C------------------------------------------------------------------AACAACAACAGCAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................24130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAA-CAA------------------C------------------------------------------------------------------AACAACAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................ACAGCAA-CAA------------------C------------------------------------------------------------------AACAACAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CAA------------------C------------------------------------------------------------------AACAACAACAGCAGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................A------------------C------------------------------------------------------------------AACAACAACAGCAGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................A------------------C------------------------------------------------------------------AACAACAACAGCAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................A------------------C------------------------------------------------------------------AACAACAACAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAA-CAA------------------C------------------------------------------------------------------AAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAA-CAA------------------C------------------------------------------------------------------AACAACAACAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAA-CAA------------------C------------------------------------------------------------------AACAACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................ACAGCAA-CAA------------------C------------------------------------------------------------------AACAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................AA-CAA------------------C------------------------------------------------------------------AACAACAACAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................CAA------------------C------------------------------------------------------------------AACAACAACAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAA-CAA------------------C------------------------------------------------------------------AACAACAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAA-CAA------------------C------------------------------------------------------------------AACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAA-CAA------------------C------------------------------------------------------------------AACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GCAA-CAA------------------C------------------------------------------------------------------AACAACAACAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................ACAGCAA-CAA------------------C------------------------------------------------------------------AACAACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCATGAAATGGAAGCAGC-TAT-------ACGCTC-CACT-----------------------TCA----------------------------------------------------------------GT-------------------------------------------GCA------------G-----------------------------------------------------GTCG-------------GTGCTCCGCCGCCC--------------ACAAACAACAACAGCAGCAGCAG---CAGCAACA---G------------CAACAACAACA------------CTAGCAACAATAACAA-C---------------------------------------------------------------------AATAGC---------------------AGCAAC--------------------------------------AG---CG------GCAGCAACAGCAGCAGCAAC-------------------------------------------------------------------------------------------------AACACACCAAACGGTG---------CGCAGCAGCA------GCAGCAGCAACAACACCATC------------------------------------------------------------------------------------------------A---------------GC------AGCAGCAGCA-GC---AGCATCATCAG-------------------------CAGCAACG---TGTTGTTGCCA-------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................A----------------------------------------------------------------GT-------------------------------------------GCA------------G-----------------------------------------------------GTCG-------------GTGCTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TAACAA-C---------------------------------------------------------------------AATAGC---------------------AGCAAC--------------------------------------AG---CG------G......................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAAC-------------------------------------------------------------------------------------------------AACAC.............................................................................................................................................................................................................................................................................2151.00500000500000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACACCATC------------------------------------------------------------------------------------------------A---------------GC------AGCAG........................................................................................2611.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................AA-C---------------------------------------------------------------------AATAGC---------------------AGCAAC--------------------------------------AG---CG------GCG....................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................TAACAA-C---------------------------------------------------------------------AATAGC---------------------AGCAAC--------------------------------------AG---CG------GCA....................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------GCAGCAGCAACAACAC.........................................................................................................................................................................................................................22100.90900009000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA-GC---AGCATCATCAG-------------------------CA.......................................2270.71500005000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-GC---AGCATCATCAG-------------------------CAGCAA...................................2220.50100000100000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACACCAAACGGT...................................................................................................................................................................................................................................................................1520.50100000010000000000
.................................................................................................................................................................................................................................................................................................ACAAACAACAACAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.33100000100000000000
.............................................................................................................................................................................................................................................................................................................AGCAGCAGCAG---CAGCAACA---G------------CAACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26110.09100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-GC---AGCATCATCAG-------------------------CA.......................................18140.07100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--------------------------------------AG---CG------GCAGCAACA..............................................................................................................................................................................................................................................................................................................................................................................................16190.05100000000001000000
....................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGCAG---CAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010000000000000
droSec2
ACAACAACAAT-TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAATCACCACCATCATCACC--------------------------------------------------------ATCACCA------C---CACCACCATCACA---------GTCAGCTACAACAACT------------CCAACAACAACAGCAA-CAA------------------C------------------------------------------------------------------AACA---ACAGCAGCAACA--------------------------------------------------------------------------------------------------------------------CCA-------------------------ACAACAGCCGCTACACCAACAACAGC-------AACTGCAACACCA---------------GCAGCAGCAACAACACCACCAACAAC---------------AC-------------TAT--------------------------------------------------CAGCAACAT-----GCCA----TTCAACACCAGCAA-------------------------------T----------CACAACAG----------------CAGGCTAGCAAAATCTCATATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................CAA-CAA------------------C------------------------------------------------------------------AACA---ACAGCAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.0810100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCA---------------GCAGCAGCAACAACA..........................................................................................................................................................................................................................19200.0510010
droYak3
ACAAAAAAGG--GGCGG-------------------------------------------------------------------------------------------------------------------TCACCTCGACTTATGTATTGTATATAATGTTTCTAGGTCAAATGTCGAGCAGTC-ACT-------GGTG------------------------------------------------------------------------------------------CAACAACAACAACAACAACAACAACAGCAACAGACACA------------ACAACAA-------------------------------------------------------------------------------------------------------CCGC---------------------AACAAC---A--------------------------------------ACA------AC------------------G--A------CACCAGAACAGCACA---TTTA---AC---------------------A---------------------ACAACC------------AT------------G---------CACC---------------------------------ACAGCAACACTCTTCACCCA--ACAA--------------------CCAGACCACTA-----------GTAGC---------------CACCATCAT-----CAT----CATC------CACAACAACAG-CATCAACA------ACA---A---C-------------CACAGCA------TG------CCT-------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG-CATCAACA------ACA---A---C-------------CACAGCA------..............................2512.00202000000000
......................................................................................................................................................................AGGTCAAATGTCGAGCAGTC-ACT-------G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACTA-----------GTAGC---------------CACCATCAT-----..............................................................................................................2211.00101000000000
........GG--GGCGG-------------------------------------------------------------------------------------------------------------------TCACCTCGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--A------CACCAGAACAGCACA---TT.....................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---A--------------------------------------ACA------AC------------------G--A------CACCAGAAC................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
......................................................................................................................................................................................................................................................................................................CAACAACAACAACAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001
droEre2
GCATGAAATGGAAGCAGC-TAT-------ACGCTC-CACT-----------------------TCA----------------------------------------------------------------GT-------------------------------------------GCA------------G-----------------------------------------------------GTCG-------------GTGCTCCGCCGCCC--------------ACAAACAACAACAGCAGCAGCAGCAGCAGCAACAAC---------AATAACAACAACAACA------------CTAGCAACAATAACAA-CAA------------------C------------------------------------------------AATAGC---------------------AGCAGC--------------------------------------AG---CA------GCAACAACAGCAGCAGCAAC----------------------------------------------------------A---------------------AC------------AATAACACACCAAACGGCG---------CGCAGCAGCAGCAGCAGCAACAACAACAACACCTTC---------------------------------------------------------------------------------------------------------------AGC------AGCAGCAGCA-GCATCA---------G---------------------------------------------CA-------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................TCA----------------------------------------------------------------GT-------------------------------------------GCA------------G-----------------------------------------------------GTCG-------------GTGCTCCGCCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020002000
..............................................................................................................................................................................................................................................................................................................................................................................CAACAATAACAA-CAA------------------C------------------------------------------------AATAGC---------------------AGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000002
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACACCTTC---------------------------------------------------------------------------------------------------------------AGC------AGCAGCA......................................................................................2311.0010000100
................................................................CA----------------------------------------------------------------GT-------------------------------------------GCA------------G-----------------------------------------------------GTCG-------------GTGCTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAAC----------------------------------------------------------A---------------------AC------------AATAACAC.............................................................................................................................................................................................................................................................................2911.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACACACCAAACGGCG---------C........................................................................................................................................................................................................................................................2011.0010000100
.........................................................................................................................................................................................................................................................................TCCGCCGCCC--------------ACAAACAACAACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
...............................................................................................................................................................................GCA------------G-----------------------------------------------------GTCG-------------GTGCTCCGCCGCCC--------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.....................T-------ACGCTC-CACT-----------------------TCA----------------------------------------------------------------GT-------------------------------------------GCA------------G-----------------------------------------------------GTCG-------------GTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
...................................................................................................................................T-------------------------------------------GCA------------G-----------------------------------------------------GTCG-------------GTGCTCCGCCGCCC--------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
................................................................CA----------------------------------------------------------------GT-------------------------------------------GCA------------G-----------------------------------------------------GTCG-------------GTGCTCCGCCGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACACCTTC---------------------------------------------------------------------------------------------------------------AGC------AGCAGCAGC....................................................................................2611.0010100000
...TGAAATGGAAGCAGC-TAT-------ACGCTC-C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACCTTC---------------------------------------------------------------------------------------------------------------AGC------AGCAGCAGC....................................................................................2111.0010001000
.....................................................................................................................................................................................................................................................................................................................................................................................AACAA-CAA------------------C------------------------------------------------AATAGC---------------------AGCAGC--------------------------------------AG---CA------GC.....................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------AC------------AATAACACACCAAACGGC...................................................................................................................................................................................................................................................................2111.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAAC----------------------------------------------------------A---------------------AC------------AATAAC...............................................................................................................................................................................................................................................................................2050.2010100000
.......................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAAC---------AATAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.2010100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CA------GCAACAACAGCAGCAGCAAC----------------------------------------------------------A---------------------AC------------.....................................................................................................................................................................................................................................................................................2660.1710100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA-GCATCA---------G---------------------------------------------CA-------------------18200.1530000030
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTC---------------------------------------------------------------------------------------------------------------AGC------AGCAGCAGCA-GC................................................................................19160.1320010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------AGCAGCAGCA-GCATCA---------G---------------------------------------------CA-------------------22200.1020000020
....................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1021000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------------------------------------------------------------------------AGC------AGCAGCAGCA-GCATCA---------G---------------------------------------------CA-------------------23200.1020000200
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------AGCAGCAGCA-GCATCA---------G---------------------------------------------C....................20200.0510000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC--------------------------------------AG---CA------GCAACAACAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................25200.0510001000
.......................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------AGCAGCAGCA-GCATCA---------G---------------------------------------------C....................21200.0510000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAAC----------------------------------------------------------A---------------------AC------------A....................................................................................................................................................................................................................................................................................20200.0511000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------------------AGCAGC--------------------------------------AG---CA------GCAACAACAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................28200.0511000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAAC----------------------------------------------------------A---------------------AC------------.....................................................................................................................................................................................................................................................................................19200.0511000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------------------AGCAGC--------------------------------------AG---CA------GCAACAACAGC............................................................................................................................................................................................................................................................................................................................................................................................23200.0510000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------AGCAGCAGCA-GCATCA---------...................................................................19200.0511000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC--------------------------------------AG---CA------GCAACAACAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................24200.0511000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAGCAGCAGCAAC----------------------------------------------------------A---------------------...................................................................................................................................................................................................................................................................................................21200.0510000100
.....................................................................................................................................................................................................................................................................................................ACAACAACAGCAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
....................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
.............................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------AGCAGCAGCA-GCATCA---------G---------------------------------------------.....................20200.0510001000
......................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010

Generated: 05/18/2015 at 01:47 AM