dmo_2025

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GCCCACATTGCGTGACTTGCATATAACACTCTTTAAGTACGGCTTCTGGGGTGAGCATTTGATGATGGTTCATTATATAACTTTTACTATGACAATAAATTGTTTTATTATTCATTTCATAGGATACCTGACCGCCACAGGTGTGATGACCGCTGTTTTGGTAGACCCCACGGATGCGGCTAACCTGGACAACTTTCTCAGTGACAGCACAGAGGGCGCAGACTTCAAGACTCTGCTATATAACAATGCTC ***********************************************************************************************************************((..............(((((.......((((.....(((......))).....))))...))))).........))***************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	M046 female body	V056 head	V049 head
........................................GGGTTCTGGGGGGAGTAT.................................................................................................................................................................................................	18	3	20	17.70	354	346	0	6	2
........................................GGGTTCTGGGGGGAGCAT.................................................................................................................................................................................................	18	2	1	2.00	2	1	1	0	0
.........................................................................................................................GGATACCTGACCGCCACAGGT.............................................................................................................	21	0	1	2.00	2	0	2	0	0
....................ATATAACACTCTTTAAGTACGGCTTCTGG..........................................................................................................................................................................................................	29	0	1	1.00	1	0	1	0	0
...................................................................................................................................................................................................TCTCAGTGACAGCACAGAGG....................................	20	0	1	1.00	1	0	1	0	0
.....................................................................................................................................GCCACAGGTGTGATGACCGCTGTTTTG...........................................................................................	27	0	1	1.00	1	0	1	0	0
.............................................................................................................................................................................ATGCGGCTAACCTGGACAACTTTCT.....................................................	25	0	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................GTGACAGCACAGAGGGCGCA...............................	20	0	1	1.00	1	0	1	0	0
.........................................................................................................................................................................ACGGATGCGGCTAACCTG................................................................	18	0	1	1.00	1	0	0	1	0
................................................................................................................................................................GTAGACCCCACGGATGCGGCTA.....................................................................	22	0	1	1.00	1	0	1	0	0
......................................................................................................................................................CGCTGTTTTGGTAGACCCCACGGATGC..........................................................................	27	0	1	1.00	1	0	1	0	0
...........................................................................................................................ATACCTGACCGCCACAGGT.............................................................................................................	19	0	1	1.00	1	0	1	0	0
..........................................................................................................................................................................CGGATGCGGCTAACCTGGA..............................................................	19	0	1	1.00	1	0	1	0	0
.................................TAAGTATGGGTTCTGGGGGGAG....................................................................................................................................................................................................	22	3	1	1.00	1	0	1	0	0
..........................................................................................................................................................GTTTTGGTAGACCCCACGGAT............................................................................	21	0	1	1.00	1	0	1	0	0
....................................................................................................................................................................ACCCCACGGATGCGGCTAACCTGGA..............................................................	25	0	1	1.00	1	0	1	0	0
....................................................................................................................................................................ACCCCACGGATGCGGCTAACCTGGACA............................................................	27	0	1	1.00	1	1	0	0	0
.................................................................................................................................................................................GGCTAACCTGGACAACTTTCTCAGTGA...............................................	27	0	1	1.00	1	0	1	0	0
.................................................................................................................................GACCGCCACAGGTGTGATGACCGCT.................................................................................................	25	0	1	1.00	1	0	1	0	0
.................................................................................................................................GACCGCCACAGGTGTGAT........................................................................................................	18	0	1	1.00	1	0	1	0	0
..................................................................................................................................................................AGACCCCACGGATGCGGCTAACCTGGAC.............................................................	28	0	1	1.00	1	0	1	0	0
.....................................TTCGGGTTCTGGGGGGAG....................................................................................................................................................................................................	18	3	20	0.85	17	8	9	0	0
........................................................CTTTGATGATGGTTTATTAGAT.............................................................................................................................................................................	22	3	2	0.50	1	0	1	0	0
........................................GGGTTCTGGGGTGAGTAT.................................................................................................................................................................................................	18	2	3	0.33	1	1	0	0	0
.......................................CGGGTTCTGGGGGGAGTA..................................................................................................................................................................................................	18	3	20	0.20	4	1	3	0	0
........................................GGGTTCTGGGGGGAGTATT................................................................................................................................................................................................	19	3	6	0.17	1	0	0	0	1
........................................GGCTTCTGGGGGGAGTAT.................................................................................................................................................................................................	18	2	6	0.17	1	1	0	0	0
........................................................CTTTGATGATGGTTTATTA................................................................................................................................................................................	19	2	9	0.11	1	1	0	0	0
...........................................................TGATGATGGTTTATTAGATAT...........................................................................................................................................................................	21	3	14	0.07	1	0	1	0	0
..........................................................................................................................GATACCTGAGGGCCAAAGG..............................................................................................................	19	3	14	0.07	1	1	0	0	0
........................................GGCTTCTGGGGGGAGTATG................................................................................................................................................................................................	19	3	19	0.05	1	1	0	0	0
................................................................................................................................................GATGACAGCCGTTTTGGTG........................................................................................	19	3	19	0.05	1	0	0	1	0
.......................................................................................................................................................................................................................GTGAAGGCTTCAAGACTCT.................	19	3	20	0.05	1	0	1	0	0
...................................................AGGGCATTTGATCATGGT......................................................................................................................................................................................	18	3	20	0.05	1	1	0	0	0

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6540:22655667-22655917 -	dmo_2025	GCCCACATTGCGTGACTTGCATATAACACTCTTTAAGTACGGCTTCTGGGGTGAGCATT--------------TGAT-GATGGTT--CATT--------ATATAACTT--------TTAC-------TATGACA-----A--------T--AAATTGTTTTAT---T----AT--TCATTTCATAGGATACCTGACCGCCACAGGTGTGATGACCGCTGTTTTGGTAGACCCCACGGATGCGGCTAACCTGGACAACTTTCTCAGTGACAGCACAGAGGGCGCAGACTTCAAGACTCTGCTATATAACAATGCTC
droVir3	scaffold_13047:2255948-2256184 +	dvi_15250	GCCTACACTACGCGAATTGCACATGACGCTCTACAAGTATGGCTTCTGGGGTAAGTTTA--------------TAATTATA---------T----------------------TTTATGA---CTTTA-----------T----C--TGATCAATTTTACT-----------A--TTATTTTCTAGGATACCTGACCGCCACAGGTGTTATGAGCGCCGTTCTGGTCGATCCCACAGAAACGGCCAGCTTTGAGAACTTCCTCAGTGACTCTACAGAAGGCACCGACTTTAAGACCTTGCTCTATACCAATCCAC
droGri2	scaffold_14906:9106048-9106295 +		GCCTACACTCCGAGAAATTCACTTAACGCTCTTTAAATATGGCTTTTGGGGTAAGAGAAACAAATAATTGTAATTTATGAA---------T----------------------GTATTTT-TAATAA------------------------CAATTACAATAT---------T--TTTGTAATCAGGTTACCTGACTGCATCAGGTGTGATGAGTGCCGTTTTGGTTGATCCTACGGAAACTGCCAACTTTGAGAACTTTCTCAGCGATTCCACAGAAGGCAACGATTTTAAAATGTTGCTCTACTCCAATTCAC
droWil2	scf2_1100000004943:13477756-13478001 +		GCCAACGTTACGCGATCTACATTTATCGCTCTTTAAATATGGTTTTTGGGGTAAGTCGGGCTAATTATATTT--ATATGTA---------T----------------------GT----------ACG---AT-TTGGT-T------GA--CAT-A-ATTCCA---------T--ATTTTTTAAAGGTTACTGCACGGCTACAGGAGTTATGGCAGCTGTTCTCTTGGATCCTACAGATTCGGCCAGTTTTGAAAATTTCCTCGGCGATACGGAAGAAGGCAGCGATTTCAGAACTCTGATGTATTCGAATGCCC
dp5	2:20521486-20521720 +		GCCCACGTTGCGAAGCATTCACTTGGCCCTATTGAAATATGGAGTTTTCGGTAGGTCAAT-------------CTTTAGTA---------C----------------------ACTCTTT-TAATGTT-------------------C-----ATAATAACAC---------T--CTCAATTCCAGGTTACTCCGTTGTAACTGGAGTTATGAGTGCAGTTCTGTTGGATCCTACGGAGAATGCCAGCTTTGAGAACTTCGTGGGCGACAGTGCGGCCGGGGAGGCCTTCCAGTTGCAGTTGTACACCAATCCTC
droPer2	scaffold_3:3270390-3270624 +		GCCCACGTTGCGAAGCATTCACTTGGCCCTATTGAAATATGGAGTTTTCGGTAGGTCAAT-------------CTTTAGTA---------C----------------------ACTCTTA-TAATGTT-------------------C-----ATAATAACAC---------T--CTCAATTCCAGGTTACTCCGTTGTAACTGGAGTTATGAGTGCAGTTCTGTTGGATCCTACGGAGAATGCCAGCTTTGAGAACTTCGTGGGCGACAGTGCGGCCGGGGAGGCCTTCCAGTTGCAGTTGTACACCAATCCTC
droAna3	scaffold_13340:1348154-1348397 -		TCCCACCCTTCGTGACATACACCTGTCGTTGTTCAAATACGGATTTTTCGGTAACATCT--------------TTTC-TA----------TTCTTTGCAAG------------------G-CGAGAGT-------------------AA--CTATAACTTTTGTGCT----TT--TAACTTTACAGGCTACTCCGTTGCCACTGGCGTTATGGCAGCCGTTCTTTTGGATCCCACCGATAAAGCCAGTTTTGAAAACTTCCTGGGAGAGACTGCCGAGGGGGTCGATTTCCAGATGCAAATGTACAACAATGCCC
droBip1	scf7180000396712:476972-477214 +		TCCCACCCTTCGTGACATACACCTGTCGTTGTTTAAATATGGATTCTTCGGTAAGTTTT--------------TGGT-TA----------TTTA---------GAAAGTAAGTGGCT----------CACTAAA-----C-----------------CTTTTGTTTA----CG--AAACTTTTTAGGCTACTCCGTGGCTACTGGCGTTATGGCAGCCGTTCTTCTGGATCCCACCGACAAAGCCAGTTTTGAAAACTTCCTGGGAGAGACGGCAGATGGAGTCGATTTCCAGATGCAAATGTACAACAATGCCC
droKik1	scf7180000302355:1365117-1365365 +		TCCCAGCCTGCGAGATATTCACCTGTCACTCTTCAAGCACGGATCTTTTGGTAAGTCAGG--------------ATCAGAGTTCTTTCAAA--------TT--T-------------------AAACAAATAT-TAAGT-A------GG--GTT-T-TTTTGT---------T--TCGTTTAACAGGGTTTTCAGTAGCCACAGGTGTCATGGCCGGCGTTCTACTGGATCCCACGGAAAAGGCCAGTTTCGAGAACTTTGTGGGCGACACCGAGGCAGGAGTAGACTTCCAGATGCAGCTGTACAGCGGTCCTC
droFic1	scf7180000454055:1063757-1064006 -		TCCCAGCCTTCGTGATATTCACTTGGCCTTGTTCAAGTATGGATTTTTCGGTAAGAATT--------------TGTA-GAGGCCT--TGAA--------GCTAGAAATTT-------------C---TATTAAA-----T-----------------TTGTCGGTTTTCTGCC--ATTTCCATTAGGTTATTCTGTGGCCACTGGTGTGATGGCCGCCGTTCTTCTGGATCCCACGGAGAATGCAAGTTTCGAGAACTTTATTGGTGAAACCGAAGCCGGAGAAGACTTCCAGTTGCAGCTGTACAACAGTCCTC
droEle1	scf7180000491212:517394-517634 -		TCCCAGTCTGCGAGACATTCACTTGGCGCTGTTTAAATATGGCTTTTTCGGTAAGTTCT--------------TTAAATCA---------A----------------------TATTTTG-CGCATTA---------------AATGGT--GTATATTGATAT---------A--ATTTTCCCAAGGATATTCCGTGGCCACTGGTGTGATGGCCGCCGTTCTCTTAGATCCCACAGATACAGCCAGTTTTGAGAACTTTATGGGTGAGACTGAAGCGGGAGTGGATTTCCAGATGCAGCTTTACAACAGTCCCC
droRho1	scf7180000779365:92907-93141 +		TCCTAGTCTGCGAGATATTCATTTGGCGCTCTTCAAATATGGCTTTTTCGGTAAGTGTT--------------TAAAGTTA---------T----------------------TATTTTT-TTG---------------ATAAAA-------TACATTTAAA----------C--TATTTTCCCAGGCTATACCGTGGCTACTGGTGTGATGGCCGCCGTTCTCTTAGACCCCACGGACACTGCTAGTTTCGAGAACTTTGTGGGTGATACTGATGCGGGTGTGGCCTTCCAGATTCAGCTTTATAACAGTCCCC
droBia1	scf7180000302136:1968164-1968412 -		TCCCAGCCTTAGAGATATTCATTTGGCCCTTTTTAAATACGGGTTCTTCGGTAAGTACT--------------GGC--GGGGCTT--AGTT--------GCTTCAACTTA-------------A---CATTGAA-----A-----------------TTGTGAAATATCTGTC--CTTTCCATTAGGCTACTCCGTGGCCACTAGCGTGATGGCTGCCGTTCTTCTGGATCCGACGGACTCTGCCAGCTTTGAGAACTTTATGGGCGAAACCGAAGCGGGAGTGGACTTCCAGATGCAGCTCTACAACAGTCCTC
droTak1	scf7180000415401:440217-440460 -		CCCCAGTCTGCGAGACATTCATTTGACGCTCTTTAAATACGGATATTTCGGTAAGTATT--------------TGC--GAC--TTTTTAAA--------GG-------T--------------AAACCATTAAA-----A-----------------TTCTAAATCTCGTATC--ATATGAACTAGGCTATTCCGTGGTCACTGGTGTGATGGGTGCTGTTCTGCTGGATCCCACAGACTCGGCAAGTTTTGAGAACTTTGTGGGTGATACTGAAGCAGGAGTGGACTTCCAGATGCAGATGTATAATGGCCCTC
droEug1	scf7180000409692:228963-229204 +		TCCCAGCCTGCGAGATATTCATCTGTCGCTCTTCAAACATGGATTCTTTGGTTAATATT--------------CTAAAGC----------T--------ACTTTAGAT-------------GAAGTTT-------------------GA--ATCTAATTTGATTT-------CTTTTTACCATCAGGTTATACAGTGGCCACCGGTGTTATGGCCGCCGTACTCTTGGATCCTACGGAATCTGCCAGCTTTGAGAATTTCGTGGGTGATACCGAGGCAGGTGTGGATTTCCAGATGCAGCTATACAACAGTCCCA
dm3	chr3R:21147070-21147294 -		TCCTAGTCTGCGAGATATTCATTTGGCGCTGTTCAAATACGGCTACTTCGGTAAGGATT--------------TGTAAGGA---------T----------------------GCTCTTG-GGAAATA-------------------GA--TAATAATTTTAT---------T--ACATTCCCCAGGCTACACGGTCGCTACTGGTGTAATGTCTGCTGTTCTTTTGGATCCCACGGACAGTGCTAGTTTGGAAAACTTCATAGGTGGCAGT------------GACTTCCAGATGCAGCTCTACAACAGTCCCC
droSim2	3r:20661874-20662098 -		TCCTACTCTGCGAGATATTCATTTGGCGCTTTTCAAATACGGCTACTTCGGTATGGAAT--------------CTTATGGG---------T----------------------CCTTTTG-GGAAATA-------------------GA--TAATAATTTTAT---------T--ACACTCCCCAGGCTACTCGGTCGCTACTGGTGTAATGTCCGCTGTTCTCTTGGATCCCACGGACAGTGCCAGCTTGGAGAACTTCATGGGTGGCAAT------------GACTTCCAGATGCAGCTCTACAACAGTCCCC
droSec2	scaffold_33:405357-405581 -		TCCTACTCTGCGAGATATTCATTTGGCGCTTTTCAAATACGGATACTTCGGTATGGAAT--------------CTAGTGGG---------T----------------------CCTTTTG-GGAAATA-------------------GA--TAATAATTTTAT---------T--ACATTCCCCAGGCTACTCGGTCGCTACTGGTGTAATGTCCGCTGTTCTCTTGGATCCCACGGACAGTGCCAGTTTGGAGAACTTCATGGGTGGCAAT------------GACTTCCAGATGCAGCTCTACAACAGTCCCC
droYak3	3R:25341556-25341793 +		TCCCAGCCTTCGGGACATTCATTTGGCGCTTTTCAAATTCGGTTATTTCGGTAAGCATT--------------TGAGTGGG---------T----------------------GCTTTTCAAGAATTA-------------------GA--GGATACCAATAT---------T--TATTTCCTTAGGATATACGGTTGCTACTGGTGTAATGTCTGCCGTGCTCCTGGACCCCACGGACACTGCCAGCTTGGAGAACTTCCTTGGGGACAGTGAAGCGGGAGTGGACTTCCAGATGCAGCTCTATAATAGTCCCC
droEre2	scaffold_4820:6896816-6897052 +		ACCCAGCCTTCGGGAAATTCATGTGGCGCTCTTCAAGTTCGGATATTTCGGTAAGCTTT--------------TGATTGAG---------T----------------------GCTAAAA-TAAATTC-------------------GG--GGATAATAATGT---------T--TCCTTGCCCAGGCTATTCGGTCGCCACTGGTGTAATGGCCGCTGTTCTTCTGGAACCCACGGACACTGCCAGTTTCGAGAACTTTGTCGGTGACAGTGATGCCGGCATGGACTTCCAGATGCAGCTCTACAATAGTCCCC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

GCCCACATTGCGTGACTTGCATATAACACTCTTTAAGTACGGCTTCTGGGGTGAGCATT--------------TGAT-GATGGTT--CATT--------ATATAACTT--------TTAC-------TATGACA-----A--------T--AAATTGTTTTAT---T----AT--TCATTTCATAGGATACCTGACCGCCACAGGTGTGATGACCGCTGTTTTGGTAGACCCCACGGATGCGGCTAACCTGGACAACTTTCTCAGTGACAGCACAGAGGGCGCAGACTTCAAGACTCTGCTATATAACAATGCTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................GGATACCTGACCGCCACAGGT.............................................................................................................	21	1	2.00	2	2	0	0	0	0	0
....................ATATAACACTCTTTAAGTACGGCTTCTGG..........................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................TCTCAGTGACAGCACAGAGG....................................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................GCCACAGGTGTGATGACCGCTGTTTTG...........................................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................ATGCGGCTAACCTGGACAACTTTCT.....................................................	25	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................GTGACAGCACAGAGGGCGCA...............................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................ACGGATGCGGCTAACCTG................................................................	18	1	1.00	1	0	0	0	1	0	0
................................................................................................................................................................................................................................GTAGACCCCACGGATGCGGCTA.....................................................................	22	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................CGCTGTTTTGGTAGACCCCACGGATGC..........................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................ATACCTGACCGCCACAGGT.............................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................CGGATGCGGCTAACCTGGA..............................................................	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................GTTTTGGTAGACCCCACGGAT............................................................................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................ACCCCACGGATGCGGCTAACCTGGA..............................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................ACCCCACGGATGCGGCTAACCTGGACA............................................................	27	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................GGCTAACCTGGACAACTTTCTCAGTGA...............................................	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................GACCGCCACAGGTGTGATGACCGCT.................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................GACCGCCACAGGTGTGAT........................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................AGACCCCACGGATGCGGCTAACCTGGAC.............................................................	28	1	1.00	1	1	0	0	0	0	0

droVir3

GCCTACACTACGCGAATTGCACATGACGCTCTACAAGTATGGCTTCTGGGGTAAGTTTA--------------TAATTATA---------T----------------------TTTATGA---CTTTA-----------T----C--TGATCAATTTTACT-----------A--TTATTTTCTAGGATACCTGACCGCCACAGGTGTTATGAGCGCCGTTCTGGTCGATCCCACAGAAACGGCCAGCTTTGAGAACTTCCTCAGTGACTCTACAGAAGGCACCGACTTTAAGACCTTGCTCTATACCAATCCAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................................................................................................................................................................................................................................................................GACTCTACAGAAGGCACCGAC............................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
..............................................................................................................................................................................................................GTTATGAGCGCCGTTCTGGTC........................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......ACTACGCGAATTGCACATGACGCTCTACA........................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................ACAGAAGGCACCGACTTTAA.......................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GAACTTCCTCAGTGACTCTACAGAAGG...................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GAATTGCACATGACGCTCTACAA.......................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GACTTTAAGACCTTGCTCTA...........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ATGAGCGCCGTTCTGGTCGAT.....................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GGATACCTGACCGCCACAGGT.............................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................ACAGGTGTTATGAGCGCCGTTCTG...........................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AGCTTTGAGAACTTCCTCAGTGACT.............................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ACACTACGCGAATTGCACATGAC................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................AACGGCCAGCTTTGAGAACTTCCTCAGTGG...............................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................TCTGGTCGATCCCACAGAAACGGCC......................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CTACAAGTATGGCTTCTGGGG........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................CTACAGAAGGCACCGACTTTAAGA.....................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GTGACTCTACAGAAGGCACC...............................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTGAGAACTTCCTCAGTGACT.............................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................CTCTACAGAAGGCACCGAC............................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................TCTACAGAAGGCACCGACTTTAAG......................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ACATGACGCTCTACAAGTATGGCT...............................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CACTACGCGAATTGCACATGACGCT.............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GACGCTCTACAAGTATGGCTTCTGGGG........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GCCGTTCTGGTCGATCCCACAGA.............................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TTGCACATGACGCTCTACAA.......................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CGCCGTTCTGGTCGATCCCA.................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CTACAAGTATGGCTTCTGG..........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................CTCTACAGAAGGCACCGACT...........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GACTTTAAGACCTTGCTCTATACC.......	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................CTACAGAAGGCACCGACT...........................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................GACCGCCACAGGTGTTATGAG.....................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ACGCGAATTGCACATGACGCT.............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................CACCGACTTTAAGACCTTGCTCT............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................CGGCCAGCTTTGAGAACTTCCT.....................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GATACCTGACCGCCACAGGT.............................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TTCTGGTCGATCCCACAGA.............................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATGACGCTCTACAAGTATGGCTTCTGGG.........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GTTATGAGCGCCGTTCTG...........................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GTTCTGGTCGATCCCACAG..............................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

GCCTACACTCCGAGAAATTCACTTAACGCTCTTTAAATATGGCTTTTGGGGTAAGAGAAACAAATAATTGTAATTTATGAA---------T----------------------GTATTTT-TAATAA------------------------CAATTACAATAT---------T--TTTGTAATCAGGTTACCTGACTGCATCAGGTGTGATGAGTGCCGTTTTGGTTGATCCTACGGAAACTGCCAACTTTGAGAACTTTCTCAGCGATTCCACAGAAGGCAACGATTTTAAAATGTTGCTCTACTCCAATTCAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................................................................................................................................................................................................................................CTCAGCGATTCCACAGAAGGCA.................................	22	1	1.00	1	0	1
.........................................................................................................................................................................................GGTTACCTGACTGCATCAG...............................................................................................................	19	1	1.00	1	1	0
............................................................................................................................................................................................................GTGTGATGAGTGCCGTTTTGGTTGA......................................................................................	25	2	0.50	1	0	1

droWil2

GCCAACGTTACGCGATCTACATTTATCGCTCTTTAAATATGGTTTTTGGGGTAAGTCGGGCTAATTATATTT--ATATGTA---------T----------------------GT----------ACG---AT-TTGGT-T------GA--CAT-A-ATTCCA---------T--ATTTTTTAAAGGTTACTGCACGGCTACAGGAGTTATGGCAGCTGTTCTCTTGGATCCTACAGATTCGGCCAGTTTTGAAAATTTCCTCGGCGATACGGAAGAAGGCAGCGATTTCAGAACTCTGATGTATTCGAATGCCC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................................................................................................GATACGGAAGAAGGCAGCG..............................	19	1	2.00	2	0	0	0	2	0
.............................................................................................................................................................................................................................................................AAATTTCCTCGGCGATACGGAAGAAGGC..................................	28	1	2.00	2	0	0	2	0	0
............................................................................................................................................................................................................................................................................................GATTTCAGAACTCTGATGTATT.........	22	1	2.00	2	2	0	0	0	0
.......................................................................................................................................................................................................TACAGGAGTTATGGCAGCT.................................................................................................	19	1	2.00	2	0	1	0	1	0
...........................................................................................................................................................................................................................................................GAAAATTTCCTCGGCGATACGG..........................................	22	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................GGTTACTGCACGGCTACAGGA.............................................................................................................	21	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................CAGAACTCTGATGTATTC........	18	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................................................................................................GATACGGAAGAAGGCAGCGATTTCA........................	25	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................TCTTGGATCCTACAGATTCGGC.......................................................................	22	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................................TTTGAAAATTTCCTCGGG.................................................	18	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................................................................................................................AGAAGGCAGCGATTTCAGAACTCT.................	24	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................GCGATTTCAGAACTCTGAT..............	19	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................................................................................................GATACGGAAGAAGGCAGCGATT...........................	22	1	1.00	1	0	0	1	0	0
................CTACATTTATCGCTCTTTAAATATGGT................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................GTTTTGAAAATTTCCTCGGCG................................................	21	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................TCCTACAGATTCGGCCAGTTT.................................................................	21	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................TTGAAAATTTCCTCGGCGATACGG..........................................	24	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................ATGGCAGCTGTTCTCTTGGATCCT..................................................................................	24	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................ACAGATTCGGCCAGTTTTGAAAAT..........................................................	24	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................TTTGAAAATTTCCTCGGCG................................................	19	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................TTCTCTTGGATCCTACAGA.............................................................................	19	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................AGCGATTTCAGAACTCTGAT..............	20	1	1.00	1	1	0	0	0	0
..............................................................................................................................................................................................................GTTATGGCAGCTGTTCTCTTG........................................................................................	21	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................TTCCTCGGCGATACGGAAGAAGGCAGC...............................	27	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................CTCTTGGATCCTACAGATTCGGCCA.....................................................................	25	1	1.00	1	1	0	0	0	0
.............GATCTACATTTATCGCTCTT..........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................CCTCGGCGATACGGAAGAAGG...................................	21	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................AGTTTTGAAAATTTCCTCGGC.................................................	21	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................CGATACGGAAGAAGGCAGC...............................	19	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................GGCGATACGGAAGAAGGCA.................................	19	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................................TCAGAACTCTGATGTATTC........	19	1	1.00	1	1	0	0	0	0
...............................TTTAAATATGGTTTTTGGGGTT......................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................CTTGGATCCTACAGATTCGGCC......................................................................	22	1	1.00	1	1	0	0	0	0
...................CATTTATCGCTCTTTAAATATGGT................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................TACGGAAGAAGGCAGCGATTTCA........................	23	1	1.00	1	0	0	0	1	0

dp5

GCCCACGTTGCGAAGCATTCACTTGGCCCTATTGAAATATGGAGTTTTCGGTAGGTCAAT-------------CTTTAGTA---------C----------------------ACTCTTT-TAATGTT-------------------C-----ATAATAACAC---------T--CTCAATTCCAGGTTACTCCGTTGTAACTGGAGTTATGAGTGCAGTTCTGTTGGATCCTACGGAGAATGCCAGCTTTGAGAACTTCGTGGGCGACAGTGCGGCCGGGGAGGCCTTCCAGTTGCAGTTGTACACCAATCCTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................................................................GCTTTGAGAACTTCGTGGGC.................................................	20	1	4.00	4	0	3	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................GTTATGAGTGCAGTTCTGTTGG.......................................................................................	22	2	3.00	6	0	4	0	0	2	0	0	0	0	0
................................................................................................................................................................................................................................................ATGCCAGCTTTGAGAACTTCGTGGGC.................................................	26	1	3.00	3	0	1	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................GCCAGCTTTGAGAACTTCGTGGGC.................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................TATTGAAATATGGAGTTTTCGGTT......................................................................................................................................................................................................................................................................	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................ATGCCAGCTTTGAGAACTTCGT.....................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GTTATGAGTGCAGTTCTGTTG........................................................................................	21	2	1.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................ATGCCAGCTTTGAGAACTTCGTG....................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................CGACAGTGCGGCCGGGGA................................	18	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GCCAGCTTTGAGAACTTCGT.....................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................CTTTGAGAACTTCGTGGGC.................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................GACAGTGCGGCCGGGGAGGC.............................	20	2	1.00	2	0	1	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................GTTGGATCCTACGGAGAAT.........................................................................	19	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................GAATGCCAGCTTTGAGAACTTCGTG....................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TTTGAGAACTTCGTGGGC.................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................GACAGTGCGGCCGGGGAGGCCTTCC........................	25	2	1.00	2	0	0	0	0	2	0	0	0	0	0
.............................................................................................................................................................................................................................................................GAACTTCGTGGGCGACAGTGC.........................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTGAGAACTTCGTGGGCGACA.............................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................GACAGTGCGGCCGGGGAGGCCTT..........................	23	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................AATGCCAGCTTTGAGAACTTCGTGGGC.................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GCAGTTCTGTTGGATCCTACGGA.............................................................................	23	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................GACAGTGCGGCCGGGGAG...............................	18	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTGAGAACTTCGTGGGCGAC..............................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................GCTTTGAGAACTTCGTGGGCGACAGTGC.........................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................TGCCAGCTTTGAGAACTTCGTGGGC.................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
GCCCACGTTGCGAAGCATTCA......................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................GACAGTGCGGCCGGGGAGG..............................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GTTGTAACTGGAGTTATGAGT....................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GAGTGCAGTTCTGTTGGATCCTACGGA.............................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GTGCGGCCGGGGAGGCCTTCCAG......................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ACTTCGTGGGCGACAGTGCGGCCG....................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................GTGCAGTTCTGTTGGATC....................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................ATTGAAATATGGAGTTTTCGGTT......................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GTTGGATCCTACGGAGAATGCCA.....................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................ACTCCGTTGTAACTGGAGT...........................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................CAGTTGCAGTTGTACACCA......	19	2	0.50	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................GCAGTTCTGTTGGATCCTACA...............................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................GGATCCTACGGAGAATGCC......................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................GGGCGACAGTGCGGCCGGGGA................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................GTGCAGTTCTGTTGGATCCTACA...............................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................CTTGGCCCTATTGAAATATGGA................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................GTTGGATCCTACGGAGAATGC.......................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................TCACTTGGCCCTATTGAAATATGG.................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GATCCTACGGAGAATGCCAGC...................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................CGGGGAGGCCTTCCAGTT....................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GTTGCAGTTGTACACCAATCCT.	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CGTTGTAACTGGAGTTATGA......................................................................................................	20	2	0.50	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................GGGCGACAGTGCGGCCGGG..................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TGTTGGATCCTACGGAGAATGCC......................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ACTTCGTGGGCGACAGTGCGGCC.....................................	23	2	0.50	1	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................GTTATGAGTGCAGTTCTGTTGGATC....................................................................................	25	2	0.50	1	0	0	0	0	0	0	1	0	0	0
.....CGTTGCGAAGCATTCACTTG..................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GGCCTTCCAGTTGCAGTTGTA...........	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................ATTGAAATATGGAGTTTTCGG........................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TGCAGTTGTACACCAATC...	18	2	0.50	1	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................AGTTCTGTTGGATCCTACGGAGA...........................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......GTTGCGAAGCATTCACTTG..................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................GAGTTATGAGTGCAGTTCTGTTGGATC....................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AACTGGAGTTATGAGTGCA.................................................................................................	19	2	0.50	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................TATGAGTGCAGTTCTGTTGGATCC...................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................CGGGGAGGCCTTCCAGTTGC..................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
GCCCACGTTGCGAAGCATTCACTTGGCC...............................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CCGTTGTAACTGGAGTTATGA......................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................ATTCACTTGGCCCTATTGAAATAT...................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................TGAAATATGGAGTTTTCGGT.......................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GTTATGAGTGCAGTTCTGTT.........................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................GGCCGGGGAGGCCTTCCAGTT....................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GTTGTAACTGGAGTTATGAGTGCA.................................................................................................	24	2	0.50	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................AGTGCAGTTCTGTTGGATCC...................................................................................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0
.........................GCCCTATTGAAATATGGAGTTTTCGGT.......................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CTGTTGGATCCTACGGAGAAT.........................................................................	21	2	0.50	1	0	0	0	1	0	0	0	0	0	0
GCCCACGTTGCGAAGCATT........................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................CGGGGAGGCCTTCCAGTTGCAGTT..............	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CTGTTGGATCCTACGGAGA...........................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AACTGGAGTTATGAGTGCAGTTCTGTT.........................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................AATATGGAGTTTTCGGTT......................................................................................................................................................................................................................................................................	18	8	0.13	1	0	1	0	0	0	0	0	0	0	0

droPer2

GCCCACGTTGCGAAGCATTCACTTGGCCCTATTGAAATATGGAGTTTTCGGTAGGTCAAT-------------CTTTAGTA---------C----------------------ACTCTTA-TAATGTT-------------------C-----ATAATAACAC---------T--CTCAATTCCAGGTTACTCCGTTGTAACTGGAGTTATGAGTGCAGTTCTGTTGGATCCTACGGAGAATGCCAGCTTTGAGAACTTCGTGGGCGACAGTGCGGCCGGGGAGGCCTTCCAGTTGCAGTTGTACACCAATCCTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................GTGCAGTTCTGTTGGATC....................................................................................	18	3	1.67	5	5	0	0	0	0	0
......................................................................................................................................................................................................................................................GCTTTGAGAACTTCGTGGGC.................................................	20	2	1.50	3	1	1	0	0	0	1
............................................................................................................................................................................................TACTCCGTTGTAACTGGA.............................................................................................................	18	2	1.50	3	3	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTGAGAACTTCGTGGGCGA...............................................	19	2	1.00	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTGAGAACTTCGTGGGCGG...............................................	19	2	1.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................AGTGCAGTTCTGTTGGATC....................................................................................	19	3	1.00	3	3	0	0	0	0	0
........................................................................................................................................................................................................................................................TTTGAGAACTTCGTGGGCGACAGT...........................................	24	2	1.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................ATGAGTGCAGTTCTGTTGGATC....................................................................................	22	3	1.00	3	3	0	0	0	0	0
..........................................................................................................................................................................................................................................CGGAGAATGCCAGCTTTGAGAACTT........................................................	25	2	1.00	2	2	0	0	0	0	0
..............................................................................................................................................................................................................GTTATGAGTGCAGTTCTGTTG........................................................................................	21	3	1.00	3	0	0	0	0	0	3
..............................................................................................................................................................................................................GTTATGAGTGCAGTTCTGTTGG.......................................................................................	22	3	0.67	2	0	1	0	0	0	1
................................................................................................................................................................................................................TATGAGTGCAGTTCTGTTGGAT.....................................................................................	22	3	0.67	2	2	0	0	0	0	0
................................................................................................................................................................................................................................................................CTTCGTGGGCGACAGTGCGGCCGG...................................	24	2	0.50	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................ATGCCAGCTTTGAGAACTTCGT.....................................................	22	2	0.50	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................TTGAGAACTTCGTGGGCGAC..............................................	20	2	0.50	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................GCCAGCTTTGAGAACTTCGTGGG..................................................	23	2	0.50	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................GTTCTGTTGGATCCTACGGA.............................................................................	20	2	0.50	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................CCTACGGAGAATGCCAGCTTTGAGAA...........................................................	26	2	0.50	1	0	0	0	0	0	1
..............................................................................................................................................................................................CTCCGTTGTAACTGGAGTTATGAG.....................................................................................................	24	2	0.50	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................CAGCTTTGAGAACTTCGTGGG..................................................	21	2	0.50	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................TGAGAACTTCGTGGGCGAC..............................................	19	2	0.50	1	0	0	0	0	0	1
............................................................................................................................................................................................................................TCTGTTGGATCCTACGGAGAATGCC......................................................................	25	2	0.50	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................TTTGAGAACTTCGTGGGC.................................................	18	2	0.50	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................ATGCCAGCTTTGAGAACTTC.......................................................	20	2	0.50	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................AGAACTTCGTGGGCGACAGTGCGG.......................................	24	2	0.50	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................CTTTGAGAACTTCGTGGGC.................................................	19	2	0.50	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................CCAGCTTTGAGAACTTCGTGGGC.................................................	23	2	0.50	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................CGACAGTGCGGCCGGGGA................................	18	2	0.50	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................AGCTTTGAGAACTTCGTGGGC.................................................	21	2	0.50	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................AGTTCTGTTGGATCCTAC................................................................................	18	2	0.50	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................GTGCAGTTCTGTTGGATCCTACG...............................................................................	23	2	0.50	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................GAGGCCTTCCAGTTGCAGT...............	19	2	0.50	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................AACTTCGTGGGCGACAGTGCGGCCGGGG.................................	28	2	0.50	1	0	0	1	0	0	0
..............................................................................................................................................................................................................GTTATGAGTGCAGTTCTGT..........................................................................................	19	3	0.33	1	0	1	0	0	0	0
GCCCACGTTGCGAAGCATT........................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	1	0	0	0
..................................................................................................................................................................................................................TGAGTGCAGTTCTGTTGGATCC...................................................................................	22	3	0.33	1	1	0	0	0	0	0
..............................................................................................................................................................................................................GTTATGAGTGCAGTTCTGTTGGATC....................................................................................	25	3	0.33	1	1	0	0	0	0	0

droAna3

TCCCACCCTTCGTGACATACACCTGTCGTTGTTCAAATACGGATTTTTCGGTAACATCT--------------TTTC-TA----------TTCTTTGCAAG------------------G-CGAGAGT-------------------AA--CTATAACTTTTGTGCT----TT--TAACTTTACAGGCTACTCCGTTGCCACTGGCGTTATGGCAGCCGTTCTTTTGGATCCCACCGATAAAGCCAGTTTTGAAAACTTCCTGGGAGAGACTGCCGAGGGGGTCGATTTCCAGATGCAAATGTACAACAATGCCC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................TACTCCGTTGCCACTGGCGTTATGGC.....................................................................................................	26	1	3.00	3	2	1	0	0	0	0
................ATACACCTGTCGTTGTTCAA.......................................................................................................................................................................................................................................................................................	20	1	2.00	2	1	0	0	0	1	0
................ATACACCTGTCGTTGTTCAAATAC...................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................AGCCGTTCTTTTGGATCCCACCGATA...........................................................................	26	1	1.00	1	1	0	0	0	0	0
..........CGTGACATACACCTGTCGTTGTTCAA.......................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................AGATGCAAATGTACAACAAT....	20	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................GTTTTGAAAACTTCCTGGGAGAGACTGC.........................................	28	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................CACTGGCGTTATGGCAGCCGTTC.............................................................................................	23	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................CGTTGCCACTGGCGTTATGGCAGCC.................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................GGAGAGACTGCCGAGGGGGT................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................TTCTTTTGGATCCCACCGATA...........................................................................	21	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................TACTCCGTTGCCACTGGCGTT..........................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................CTTTTGGATCCCACCGATAAAGCC......................................................................	24	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................CTGCCGAGGGGGTCGATTTCCA.......................	22	1	1.00	1	0	0	0	0	1	0
...............................TTCAAATACGGATTTTTCGGC.......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................GAGGGGGTCGATTTCCAGATGCAA................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................GTTGCCACTGGCGTTATGGCAGCC.................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................GATCCCACCGATAAAGCCAGTT..................................................................	22	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................GCCGTTCTTTTGGATCCCAC................................................................................	20	1	1.00	1	0	1	0	0	0	0
......CCTTCGTGACATACACCTGTCGTC.............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...................CACCTGTCGTTGTTCAAAT.....................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................AGTTTTGAAAACTTCCTGGGAGAGA.............................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................GATAAAGCCAGTTTTGAAAAC..........................................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................TTGAAAACTTCCTGGGAGAGAC............................................	22	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................GCCGTTCTTTTGGATCCCACCGATA...........................................................................	25	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................CGTTCTTTTGGATCCCACCGAT............................................................................	22	1	1.00	1	1	0	0	0	0	0
.........TCGTGACATACACCTGTCGTTGTT..........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0
...............CATACACCTGTCGTTGTTCAA.......................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................AGACTGCCGAGGGGGTCGATTTCCAG......................	26	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................CGATTTCCAGATGCAAATGT............	20	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................GAAAACTTCCTGGGAGAGA.............................................	19	1	1.00	1	0	0	0	0	1	0
................................TCAAATACGGATTTTTCGGCT......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0

droBip1

TCCCACCCTTCGTGACATACACCTGTCGTTGTTTAAATATGGATTCTTCGGTAAGTTTT--------------TGGT-TA----------TTTA---------GAAAGTAAGTGGCT----------CACTAAA-----C-----------------CTTTTGTTTA----CG--AAACTTTTTAGGCTACTCCGTGGCTACTGGCGTTATGGCAGCCGTTCTTCTGGATCCCACCGACAAAGCCAGTTTTGAAAACTTCCTGGGAGAGACGGCAGATGGAGTCGATTTCCAGATGCAAATGTACAACAATGCCC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCCCAGCCTGCGAGATATTCACCTGTCACTCTTCAAGCACGGATCTTTTGGTAAGTCAGG--------------ATCAGAGTTCTTTCAAA--------TT--T-------------------AAACAAATAT-TAAGT-A------GG--GTT-T-TTTTGT---------T--TCGTTTAACAGGGTTTTCAGTAGCCACAGGTGTCATGGCCGGCGTTCTACTGGATCCCACGGAAAAGGCCAGTTTCGAGAACTTTGTGGGCGACACCGAGGCAGGAGTAGACTTCCAGATGCAGCTGTACAGCGGTCCTC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCCCAGCCTTCGTGATATTCACTTGGCCTTGTTCAAGTATGGATTTTTCGGTAAGAATT--------------TGTA-GAGGCCT--TGAA--------GCTAGAAATTT-------------C---TATTAAA-----T-----------------TTGTCGGTTTTCTGCC--ATTTCCATTAGGTTATTCTGTGGCCACTGGTGTGATGGCCGCCGTTCTTCTGGATCCCACGGAGAATGCAAGTTTCGAGAACTTTATTGGTGAAACCGAAGCCGGAGAAGACTTCCAGTTGCAGCTGTACAACAGTCCTC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCCCAGTCTGCGAGACATTCACTTGGCGCTGTTTAAATATGGCTTTTTCGGTAAGTTCT--------------TTAAATCA---------A----------------------TATTTTG-CGCATTA---------------AATGGT--GTATATTGATAT---------A--ATTTTCCCAAGGATATTCCGTGGCCACTGGTGTGATGGCCGCCGTTCTCTTAGATCCCACAGATACAGCCAGTTTTGAGAACTTTATGGGTGAGACTGAAGCGGGAGTGGATTTCCAGATGCAGCTTTACAACAGTCCCC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCCTAGTCTGCGAGATATTCATTTGGCGCTCTTCAAATATGGCTTTTTCGGTAAGTGTT--------------TAAAGTTA---------T----------------------TATTTTT-TTG---------------ATAAAA-------TACATTTAAA----------C--TATTTTCCCAGGCTATACCGTGGCTACTGGTGTGATGGCCGCCGTTCTCTTAGACCCCACGGACACTGCTAGTTTCGAGAACTTTGTGGGTGATACTGATGCGGGTGTGGCCTTCCAGATTCAGCTTTATAACAGTCCCC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCCCAGCCTTAGAGATATTCATTTGGCCCTTTTTAAATACGGGTTCTTCGGTAAGTACT--------------GGC--GGGGCTT--AGTT--------GCTTCAACTTA-------------A---CATTGAA-----A-----------------TTGTGAAATATCTGTC--CTTTCCATTAGGCTACTCCGTGGCCACTAGCGTGATGGCTGCCGTTCTTCTGGATCCGACGGACTCTGCCAGCTTTGAGAACTTTATGGGCGAAACCGAAGCGGGAGTGGACTTCCAGATGCAGCTCTACAACAGTCCTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCCCAGTCTGCGAGACATTCATTTGACGCTCTTTAAATACGGATATTTCGGTAAGTATT--------------TGC--GAC--TTTTTAAA--------GG-------T--------------AAACCATTAAA-----A-----------------TTCTAAATCTCGTATC--ATATGAACTAGGCTATTCCGTGGTCACTGGTGTGATGGGTGCTGTTCTGCTGGATCCCACAGACTCGGCAAGTTTTGAGAACTTTGTGGGTGATACTGAAGCAGGAGTGGACTTCCAGATGCAGATGTATAATGGCCCTC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCCCAGCCTGCGAGATATTCATCTGTCGCTCTTCAAACATGGATTCTTTGGTTAATATT--------------CTAAAGC----------T--------ACTTTAGAT-------------GAAGTTT-------------------GA--ATCTAATTTGATTT-------CTTTTTACCATCAGGTTATACAGTGGCCACCGGTGTTATGGCCGCCGTACTCTTGGATCCTACGGAATCTGCCAGCTTTGAGAATTTCGTGGGTGATACCGAGGCAGGTGTGGATTTCCAGATGCAGCTATACAACAGTCCCA	Size	Hit Count	Total Norm	Total
No Reads

dm3

TCCTAGTCTGCGAGATATTCATTTGGCGCTGTTCAAATACGGCTACTTCGGTAAGGATT--------------TGTAAGGA---------T----------------------GCTCTTG-GGAAATA-------------------GA--TAATAATTTTAT---------T--ACATTCCCCAGGCTACACGGTCGCTACTGGTGTAATGTCTGCTGTTCTTTTGGATCCCACGGACAGTGCTAGTTTGGAAAACTTCATAGGTGGCAGT------------GACTTCCAGATGCAGCTCTACAACAGTCCCC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................T----------------------GCTCTTG-GGAAATA-------------------GA--TAATAAT.............................................................................................................................................................	24	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CACGGTCGCTACTGGTGTAATG.......................................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TACTTCGGTAAGGATT--------------TGTAAGGA---------T----------------------GC........................................................................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TCAAATACGGCTACTTCGGTAAGGA..................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TAGGTGGCAGT------------GACTTCCAGATGCAGC...............	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CAAATACGGCTACTTCGGTAAGGAT.................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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droSim2

TCCTACTCTGCGAGATATTCATTTGGCGCTTTTCAAATACGGCTACTTCGGTATGGAAT--------------CTTATGGG---------T----------------------CCTTTTG-GGAAATA-------------------GA--TAATAATTTTAT---------T--ACACTCCCCAGGCTACTCGGTCGCTACTGGTGTAATGTCCGCTGTTCTCTTGGATCCCACGGACAGTGCCAGCTTGGAGAACTTCATGGGTGGCAAT------------GACTTCCAGATGCAGCTCTACAACAGTCCCC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................CTCTTGGATCCCACGGAC............................................................................	18	1	4.00	4	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CTCTTGGATCCCACGGACAGTGCC......................................................................	24	1	4.00	4	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CAGTGCCAGCTTGGAGAACTTCATGGGT.................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CGCTGTTCTCTTGGATCC...................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GTTCTCTTGGATCCCACG...............................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CCGCTGTTCTCTTGGATCCCACGGA.............................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GTAATGTCCGCTGTTCTCTTGG.......................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TTGGAGAACTTCATGGGTGGCAAT------------...............................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.CCTACTCTGCGAGATATTCATTTGGCG...............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GCTACTCGGTCGCTACTGGTGT...........................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CCGCTGTTCTCTTGGATCCC..................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GACAGTGCCAGCTTGGAGAACTTC.......................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GTAATGTCCGCTGTTCTCTTGGATCC...................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CTTGGATCCCACGGACAGTGCC......................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TACTGGTGTAATGTCCGCTGTTCT............................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CTACTCTGCGAGATATTCATTTGGCGCT.............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TCCTACTCTGCGAGATATTCATTTGGCGCTTTTCAAATACGGATACTTCGGTATGGAAT--------------CTAGTGGG---------T----------------------CCTTTTG-GGAAATA-------------------GA--TAATAATTTTAT---------T--ACATTCCCCAGGCTACTCGGTCGCTACTGGTGTAATGTCCGCTGTTCTCTTGGATCCCACGGACAGTGCCAGTTTGGAGAACTTCATGGGTGGCAAT------------GACTTCCAGATGCAGCTCTACAACAGTCCCC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................AGTTTGGAGAACTTCATGGGT.................................................	21	1	2.00	2	0	1	1	0
.............................................................................................................................................................................................................................CTCTTGGATCCCACGGACAGTGCC......................................................................	24	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................GACTTCCAGATGCAGCTCT............	19	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................GTTTGGAGAACTTCATGGGTGGC..............................................	23	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................AGATGCAGCTCTACAACAGTC...	21	1	1.00	1	0	0	0	1
............................................................................................................................................................................................................................................................................................GACTTCCAGATGCAGCTCTACAAC.......	24	1	1.00	1	0	0	1	0
................ATTCATTTGGCGCTTTTCAA.......................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
......................TTGGCGCTTTTCAAATACG..................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
.............................................................................................................................................................................................................................................................................AAT------------GACTTCCAGATGCAGCTCTA...........	23	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................................................GGCAAT------------GACTTCCAGATGCAGCT..............	23	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................TACTGGTGTAATGTCCGCTGTTCTC...........................................................................................	25	1	1.00	1	1	0	0	0
.......CTGCGAGATATTCATTTG..................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................CAGTGCCAGTTTGGAGAACT.........................................................	20	1	1.00	1	0	1	0	0

droYak3

TCCCAGCCTTCGGGACATTCATTTGGCGCTTTTCAAATTCGGTTATTTCGGTAAGCATT--------------TGAGTGGG---------T----------------------GCTTTTCAAGAATTA-------------------GA--GGATACCAATAT---------T--TATTTCCTTAGGATATACGGTTGCTACTGGTGTAATGTCTGCCGTGCTCCTGGACCCCACGGACACTGCCAGCTTGGAGAACTTCCTTGGGGACAGTGAAGCGGGAGTGGACTTCCAGATGCAGCTCTATAATAGTCCCC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................................................GAAGCGGGAGTGGACTTCCA.......................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................................................................................................................GTAATGTCTGCCGTGCTCCTGGACCC...................................................................................	26	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GGACTTCCAGATGCAGCTCT............	20	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................TCTGCCGTGCTCCTGGACCCC..................................................................................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GACCCCACGGACACTGCCAG....................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................GACAGTGAAGCGGGAGTGGACTT..........................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............GACATTCATTTGGCGCTTTTCAAATTCG..................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................GACTTCCAGATGCAGCTCTATAAT.......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................GAACTTCCTTGGGGACAGTGAAGC......................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GTGAAGCGGGAGTGGACTTCC........................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................GTCTGCCGTGCTCCTGGACCC...................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GTGAAGCGGGAGTGGACTTCCAGATG...................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................CTGCCGTGCTCCTGGACCCCAC................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................CTTGGAGAACTTCCTTGGGGACAGT...........................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................GACTTCCAGATGCAGCTCT............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CACTGCCAGCTTGGAGAACTTCCC.....................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GGGGACAGTGAAGCGGGAGTGGA.............................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................CGGGAGTGGACTTCCAGATGCA.................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................ATTTCGGTAAGCATT--------------TGAGTGGG---------T----------------------GCT.......................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.CCCAGCCTTCGGGACATTCATTTGGCGC..............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............ACATTCATTTGGCGCTTTTCAA.......................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...CAGCCTTCGGGACATTCATTTGGCGC..............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TGGAGAACTTCCTTGGGGAC..............................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................GCGCTTTTCAAATTCGGTTATTTCG.........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................CTTTTCAAATTCGGTTATTTCG.........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................GTGGACTTCCAGATGCAGCT..............	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................CTGCCGTGCTCCTGGACC....................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GGACAGTGAAGCGGGAGTG...............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TATACGGTTGCTACTGGTGT...........................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................AGTGGACTTCCAGATGCAGCTCT............	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................GACTTCCAGATGCAGCTCTATAATA......	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................CGCTTTTCAAATTCGGTTATTTCGGAT......................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................TTCAAATTCGGTTATTTCGGA.......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CAGCTTGGAGAACTTCCTT....................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CTTCCAGATGCAGCTCTATAATA......	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GGATATACGGTTGCTACTGGTGT...........................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................CGGACACTGCCAGCTTGG...............................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GCCGTGCTCCTGGACCCCAC................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ATGTCTGCCGTGCTCCTGGACCC...................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GGACTTCCAGATGCAGCTCTAT..........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CTGCCGTGCTCCTGGACCC...................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
......................TTGGCGCTTTTCAAATTCGGTT...............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................GGATATACGGTTGCTACTGGT.............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................GATATACGGTTGCTACTGGT.............................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................GGAGAACTTCCTTGGGGACAGTGAAG.......................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................GAAGCGGGAGTGGACTTCCAGATGCAGCT..............	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................AGAACTTCCTTGGGGACAGT...........................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GATATACGGTTGCTACTGGTGTAAT........................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................ATTTGGCGCTTTTCAAATTC...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CTTCCAGATGCAGCTCTATAAT.......	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........TTCGGGACATTCATTTGGCGC..............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................CTTGGAGAACTTCCTTGGGGA...............................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................GGATATACGGTTGCTACTG...............................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AGCTTGGAGAACTTCCTTGGGGACA.............................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

ACCCAGCCTTCGGGAAATTCATGTGGCGCTCTTCAAGTTCGGATATTTCGGTAAGCTTT--------------TGATTGAG---------T----------------------GCTAAAA-TAAATTC-------------------GG--GGATAATAATGT---------T--TCCTTGCCCAGGCTATTCGGTCGCCACTGGTGTAATGGCCGCTGTTCTTCTGGAACCCACGGACACTGCCAGTTTCGAGAACTTTGTCGGTGACAGTGATGCCGGCATGGACTTCCAGATGCAGCTCTACAATAGTCCCC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................................................................................................................................................................................................................................................................GTGACAGTGATGCCGGCAT................................	19	1	5.00	5	1	0	0	1	1	2	0
.............................................................................................................................................................................................................................CTTCTGGAACCCACGGACACTGCCA.....................................................................	25	1	3.00	3	2	0	0	1	0	0	0
................................................................................................................................................................................................................................................................CTTTGTCGGTGACAGTGATGCC.....................................	22	1	3.00	3	0	2	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................ATGGACTTCCAGATGCAGCT..............	20	1	2.00	2	1	0	0	0	1	0	0
......................................................................................................................................................................................................................................................GTTTCGAGAACTTTGTCGGTGA...............................................	22	1	2.00	2	0	0	0	0	2	0	0
..............................CTTCAAGTTCGGATATTTCGGCT......................................................................................................................................................................................................................................................................	23	1	2.00	2	1	0	0	0	0	1	0
...........................GCTCTTCAAGTTCGGATATTTCGGC.......................................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	0	0	1	0	0
......................................................................................................................................................................................................................................................GTTTCGAGAACTTTGTCGGT.................................................	20	1	2.00	2	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GGTGACAGTGATGCCGGCAT................................	20	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................GTGACAGTGATGCCGGCATGGAC............................	23	1	1.00	1	0	0	0	0	0	1	0
...................CATGTGGCGCTCTTCAAGTTCGGATAT.............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................TTCTGGAACCCACGGACACTG........................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................GTAATGGCCGCTGTTCTTCTGGA......................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................GGCTATTCGGTCGCCACTGGT.............................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................CGGTGACAGTGATGCCGGCATG...............................	22	1	1.00	1	1	0	0	0	0	0	0
..................TCATGTGGCGCTCTTCAAGT.....................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................ACTTTGTCGGTGACAGTGATGCCGGC..................................	26	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................CTGGAACCCACGGACACTGCCA.....................................................................	22	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................GGCATGGACTTCCAGATGCAGC...............	22	1	1.00	1	0	0	0	1	0	0	0
..CCAGCCTTCGGGAAATTCATGTG..................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CAGTTTCGAGAACTTTGTCGGTGAC..............................................	25	1	1.00	1	0	0	0	0	1	0	0
....................ATGTGGCGCTCTTCAAGTTCGGA................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................GTTCTTCTGGAACCCACGGACACTGCC......................................................................	27	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................GTTCTTCTGGAACCCACGGACACT.........................................................................	24	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................GGTGTAATGGCCGCTGTTCTTCTGGA......................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GACTTCCAGATGCAGCTCTACA.........	22	1	1.00	1	0	0	0	1	0	0	0
............................................................................................................................................................................................TATTCGGTCGCCACTGGTGT...........................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
...............AATTCATGTGGCGCTCTTCAA.......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................GACAGTGATGCCGGCATGGA.............................	20	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................ATTCGGTCGCCACTGGTGTAATGGCC....................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
...........................GCTCTTCAAGTTCGGATATTTCGG........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
...............AATTCATGTGGCGCTCTTCAAGTTCG..................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................CGGACACTGCCAGTTTCGAGAACTTT.......................................................	26	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................CCCACGGACACTGCCAGT...................................................................	18	1	1.00	1	0	0	0	0	0	1	0
....................ATGTGGCGCTCTTCAAGTT....................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................GTTCTTCTGGAACCCACGGACA...........................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................CACTGGTGTAATGGCCGCTGTT..............................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.........................GCGCTCTTCAAGTTCGGA................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................CCACTGGTGTAATGGCCGCT.................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TGTCGGTGACAGTGATGCC.....................................	19	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................GTAATGGCCGCTGTTCTTCTGT.......................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................GAACTTTGTCGGTGACAGT...........................................	19	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................TCCAGATGCAGCTCTACAAT.......	20	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................ACACTGCCAGTTTCGAGAACTTTGTC....................................................	26	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................AGAACTTTGTCGGTGACAGT...........................................	20	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................TATTCGGTCGCCACTGGTGTAATGT......................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................ATGGACTTCCAGATGCAGCTCT............	22	1	1.00	1	0	0	0	0	1	0	0
................ATTCATGTGGCGCTCTTCAA.......................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................ATTCGGTCGCCACTGGTGTAAT........................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
.............GAAATTCATGTGGCGCTCTTCAA.......................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GGTGACAGTGATGCCGGCATG...............................	21	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................ATTCGGTCGCCACTGGTGTAATGGCCGC..................................................................................................	28	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................AGTGATGCCGGCATGGACTT..........................	20	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................CGGTCGCCACTGGTGTAAT........................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................GATGCCGGCATGGACTTCCAGATGCAGCT..............	29	1	1.00	1	0	0	0	0	1	0	0
...CAGCCTTCGGGAAATTCATGTGG.................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................ATGCCGGCATGGACTTCCA.......................	19	1	1.00	1	1	0	0	0	0	0	0
........TTCGGGAAATTCATGTGGCGCT.............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................GCCAGTTTCGAGAACTTTGTCG...................................................	22	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................CACTGGTGTAATGGCCGCTGTTCTTCT.........................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TGACAGTGATGCCGGCATGGACTTCCA.......................	27	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................ACCCACGGACACTGCCAGTTTC................................................................	22	1	1.00	1	0	0	0	0	0	1	0

-16.8	-16.8	-16.7	-16.6

dmo_2025

scaffold_6540:22655717-22655867 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads