ID:

dmo_2010

 Coordinate:

scaffold_6540:20767403-20767553 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.3

Flybase annnotation

CDS [Dmoj\GI22671-cds]; exon [dmoj_GLEANR_7868:2]; intron [Dmoj\GI22671-in]

Repeatable elements

NameClassFamilyStrand
Homo6DNAhAT-Pegasus-
mature
  1. scaffold_61:293-315 -
  2. scaffold_3931:2836-2858 -
  3. scaffold_4078:11317-11339 -
  4. scaffold_4174:5289-5311 -
  5. scaffold_4303:5741-5763 -
  6. scaffold_6035:1521-1543 -
  7. scaffold_6351:41784-41806 -
  8. scaffold_6351:50331-50353 -
  9. scaffold_6351:67236-67258 -
  10. scaffold_6396:13416-13438 -
  11. scaffold_6482:2448713-2448735 -
  12. scaffold_6498:2325781-2325803 -
  13. scaffold_6498:2599170-2599192 -
  14. scaffold_6500:14409549-14409571 -
  15. scaffold_6523:774-796 -
  16. scaffold_6540:396380-396402 -
  17. scaffold_6540:3088893-3088915 -
  18. dmo_2010  scaffold_6540:20767457-20767479 -
  19. dmo_2881  scaffold_6541:804657-804679 -
  20. scaffold_6680:13914278-13914300 -
  21. scaffold_1675:343-365 -
  22. scaffold_4147:1346-1368 -
  23. scaffold_4445:1837-1859 -
  24. scaffold_6262:16914-16936 -
  25. scaffold_6333:7352-7374 -
  26. scaffold_6461:37005-37027 -
  27. scaffold_6473:2365999-2366021 -
  28. scaffold_6473:13936262-13936284 -
  29. scaffold_6473:16855324-16855346 -
  30. scaffold_6496:23863635-23863657 -
  31. scaffold_6496:24592675-24592697 -
  32. scaffold_6496:26732176-26732198 -
  33. scaffold_6498:1968621-1968643 -
  34. scaffold_6498:2914702-2914724 -
  35. scaffold_6540:102062-102084 -
  36. scaffold_6540:943960-943982 -
  37. scaffold_6540:9855075-9855097 -
  38. scaffold_6540:12739514-12739536 -
  39. scaffold_6540:28164481-28164503 -
  40. scaffold_6680:24544463-24544485 -
  41. scaffold_1989:119-141 -
  42. scaffold_4092:4261-4283 -
  43. scaffold_4471:4291-4313 -
  44. scaffold_5521:3761-3783 -
  45. scaffold_6103:20372-20394 -
  46. scaffold_6315:47395-47417 -
  47. scaffold_6368:5310-5332 -
  48. scaffold_6482:1894922-1894944 -
  49. scaffold_6482:2351774-2351796 -
  50. scaffold_6496:25438756-25438778 -
  51. scaffold_6496:26797279-26797301 -
  52. scaffold_6498:1071821-1071843 -
  53. scaffold_6498:1341194-1341216 -
  54. scaffold_6498:2513430-2513452 -
  55. scaffold_6498:2520979-2521001 -
  56. scaffold_6500:26382701-26382723 -
  57. scaffold_6500:30316422-30316444 -
  58. scaffold_6540:884435-884457 -
  59. scaffold_6654:1217288-1217310 -
  60. scaffold_6680:23031431-23031453 -
star
  1. scaffold_4485:3243-3266 -
  2. scaffold_4536:9560-9583 +
  3. scaffold_5296:184-207 -
  4. scaffold_6305:3454-3477 +
  5. scaffold_6328:2171026-2171049 +
  6. scaffold_6370:4776-4799 -
  7. scaffold_6473:1525224-1525247 +
  8. scaffold_6482:102287-102310 +
  9. scaffold_6496:25427060-25427083 +
  10. scaffold_6498:2603794-2603817 -
  11. scaffold_6501:243678-243701 -
  12. dmo_2010  scaffold_6540:20767492-20767515 -
  13. scaffold_6680:16326583-16326606 +
  14. scaffold_6680:23515731-23515754 +
  15. scaffold_6680:23771767-23771790 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACCCCATTTGTAGTCAATGGCATTCTGTGCGTCATATATATTGCACTCAAGTGAGTAATACGTTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTTTAATGGTTTTGTTAAAAGTATGTAACAGGCAGAAGGAGGCGTGGCAGACCCCACAAAGTATATACATTCTTGATCAGGGCGACGAGCTGAGTCGATTTGGCCCTGTCCGTCTGTCTGTCCGTCCGTCCGTATGTATGAACGCGTCGAT
****************************************************************************************.......((....(((......(((((((........)))))))......)))....))******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 M060
embryo
 V110
male body		 V056
head
 V041
embryo
............................................................................................................................GTAACAGGCAGAAGGAGGCGTGG........................................................................................................ 23 0 20 0.50 10 10 0 0 0 0
........................................................................................TGGGAAATCAGGGTTTAATGGTTT........................................................................................................................................... 24 0 15 0.27 4 1 1 1 0 1
........................................................................................TGGGAAATCAGGGTTTAATGGTT............................................................................................................................................ 23 0 15 0.27 4 3 1 0 0 0
........................................................................................TGGGAAATCAGGGTTTAATGGTTTT.......................................................................................................................................... 25 0 13 0.23 3 3 0 0 0 0
......................................................................................................................................................ACCCCACAAAGTATATACATTCTTGATC......................................................................... 28 0 9 0.22 2 1 1 0 0 0
......................................................................................................................................................ACCCCACAAAGTATATACATTCTTG............................................................................ 25 0 10 0.20 2 2 0 0 0 0
......................................................................................................................................................ACCCCACAAAGTATATACATTCTTGA........................................................................... 26 0 10 0.10 1 1 0 0 0 0
......................................................................................................................................................ACCCCACAAAGTATATACATTCTTGAT.......................................................................... 27 0 10 0.10 1 1 0 0 0 0
.......................................................................................................................................................CCCCACAAAGTATATACATTCTTG............................................................................ 24 0 10 0.10 1 1 0 0 0 0
........................................................................................TGGGAAATCAGGGTTTAATGGTTTTGT........................................................................................................................................ 27 0 10 0.10 1 0 1 0 0 0
.....................................................................................................................................................GACCCCACAAAGTATATACATTCTTGA........................................................................... 27 0 10 0.10 1 1 0 0 0 0
......................................................................................................................................................ACCCCACAAAGTATATACATTC............................................................................... 22 0 11 0.09 1 1 0 0 0 0
..................................................................................TGAAAATGGGAAATCAGGGTT.................................................................................................................................................... 21 0 12 0.08 1 1 0 0 0 0
.............................................................................................................................................................AAAGTATATACATTCTTGATCAGGG..................................................................... 25 0 14 0.07 1 0 0 1 0 0
.........................................................................................GGGAAATCAGGGTTTAATGGTT............................................................................................................................................ 22 0 15 0.07 1 1 0 0 0 0
.........................................................................................................................................................................................................GGCCCTGTCCGTCTGTCTGTCCGTCCGTC..................... 29 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................ATACATTCTTGATCAGGGCG................................................................... 20 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................TTGGCCCTGTCCGTCTGTCTGTCC............................ 24 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................GTCGATTTGGCCCTGTCCGTC..................................... 21 0 20 0.05 1 0 1 0 0 0
............................................................................................AAATCGGGGTTTAATGGTTTT.......................................................................................................................................... 21 1 20 0.05 1 0 0 0 1 0
......................................................................................GTTGGGAAATCAGGGTTTAATGGTTT........................................................................................................................................... 26 2 20 0.05 1 1 0 0 0 0
......................................................................................AACGGGAAATCAGGGTT.................................................................................................................................................... 17 1 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

TGGGGTAAACATCAGTTACCGTAAGACACGCAGTATATATAACGTGAGTTCACTCATTATGCAAAAATATGGGACTTGGGTAACTTTTACCCTTTAGTCCCAAATTACCAAAACAATTTTCATACATTGTCCGTCTTCCTCCGCACCGTCTGGGGTGTTTCATATATGTAAGAACTAGTCCCGCTGCTCGACTCAGCTAAACCGGGACAGGCAGACAGACAGGCAGGCAGGCATACATACTTGCGCAGCTA
********************************************************************************************************.......((....(((......(((((((........)))))))......)))....))**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M060
embryo
 M046
female body
 V110
male body		 V056
head
.........................................................................................................................................CCTCCGCACCGTCTGGGGTGTTT........................................................................................... 23 0 20 6.70 134 134 0 0 0
.........................................................................................................................................................................................................CCGGGACAGGCAGACAGACAG............................. 21 0 20 0.45 9 9 0 0 0
...................................................................................................................................................................................CCCGCTGCTCGACTCAGCTAAACCG............................................... 25 0 20 0.25 5 5 0 0 0
..................................................................................................CCCAAATTACCAAAACAATTTTCATACAT............................................................................................................................ 29 0 6 0.17 1 1 0 0 0
...................................................................................................CCAAATTACCAAAACAATTTTCATA............................................................................................................................... 25 0 6 0.17 1 1 0 0 0
..........................................................................................................ACCAAAACAATTTTCATACATTGTCCGT..................................................................................................................... 28 0 20 0.15 3 0 3 0 0
........................................................................................................................................................................................TGCTCGACTCAGCTAAACCGG.............................................. 21 0 20 0.15 3 0 0 3 0
.....................................................................................................................................TCTTCCTCCGCACCGTCTGGG................................................................................................. 21 0 20 0.10 2 0 2 0 0
......................................................................................................................................................TGGGGTGTTTCGTATATGTAA................................................................................ 21 1 20 0.10 2 0 1 1 0
.........................................................................................................................................................GGTGTTTCATATATGTAAGAAC............................................................................ 22 0 11 0.09 1 0 1 0 0
.........................................................................................CCCTTTAGTCCCAAATTACCAAAAC......................................................................................................................................... 25 0 12 0.08 1 1 0 0 0
......................................................................................................................................................AGGGGTGTTTCATATATGTAAG............................................................................... 22 1 14 0.07 1 0 1 0 0
....................................................................................................................................................................TATGTAAGAACTAGTCCCGCTGCT............................................................... 24 0 16 0.06 1 0 1 0 0
.................................................................................................................................................................ATATATGTAAGAACTAGTCCC..................................................................... 21 0 19 0.05 1 0 1 0 0
......................................................................................................................................................TGGGGTGTTTCGTATGTGTAAGG.............................................................................. 23 3 20 0.05 1 0 0 1 0
.......................................................................................................................................................................................................................CAGACAGGCAGGCAGGCATACATACT.......... 26 0 20 0.05 1 0 1 0 0
...................................................................................................................................................GTCTGGGGTGTTTCATATATG................................................................................... 21 0 20 0.05 1 0 1 0 0
............................................................GCAAAAATATGGGACTTGGGTAACTT..................................................................................................................................................................... 26 0 20 0.05 1 0 0 1 0
.................................................................................................................CAATTTTCATACATTGTCCGT..................................................................................................................... 21 0 20 0.05 1 0 1 0 0
...................................................................................................................................................GTCTGGGGTGTTTCATATATGT.................................................................................. 22 0 20 0.05 1 0 1 0 0
..................................................................................................................................................CGTCTGGGGTGTTTCGTATATG................................................................................... 22 1 20 0.05 1 0 0 0 1
.........................................................................................................................................................................................GCTCGACTCAGCTAAACCGGGACAGGC....................................... 27 0 20 0.05 1 0 1 0 0
..................................................................................................CTAAAGTTACCAAAACAATTTTCATACAT............................................................................................................................ 29 3 20 0.05 1 0 1 0 0
.......................................................................................................................................................................GTAAGAACTAGTCCCGCTGCT............................................................... 21 0 20 0.05 1 0 0 0 1
.....................................................................................................................................................................................................................GACAGACAGGCAGGCAGG.................... 18 0 20 0.05 1 1 0 0 0
............................................................................TGGGTAACTTTTACCCTTTAGTCCC...................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
....................................................................................................................................................TCTGGGGTGTTTCATATATGT.................................................................................. 21 0 20 0.05 1 0 1 0 0
.....................................................................................................................................................................................................................GACAGACAGGCAGGCAGGCATACAT............. 25 0 20 0.05 1 0 1 0 0
.............................................................................................................................................................................................................GACAGGCAGACAGACAGGCAGGCAGGCA.................. 28 0 20 0.05 1 1 0 0 0
........................................................................................................................................................GGGTGTTTCATATATGTAAGG.............................................................................. 21 1 20 0.05 1 0 1 0 0
...............................................................................................................................................................................................................CAGGCAGACAGACAGGCAGGCAGGCAT................. 27 0 20 0.05 1 0 1 0 0
...........................................................................TTGGGTAACTTTTACCCTT............................................................................................................................................................. 19 0 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:20767353-20767603 - dmo_2010 ACCC-CATTTGTAGT---CA------ATG-GCATTCTGTGC----------------------------GTCATATAT--------------------ATTGCACTC-AAG--------------------------TGA----------GTAATACGTTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTTTAATGGTTTTGT-TA-------AAAGTATGTAACA--GGCAGAAGGAGGCGTGGCA--GACCCCACAAAGTATAT-----ACATTCTTGATCAGGGCGACGA---GCTGAGTCGATTTGGCCCTGTCCGTCTGTCTGTCCGTC---CGTCCGTATG----TATGAACGCGTC------GA--------T
droVir3 scaffold_12967:346399-346655 + ACTC-CT--TATA-T---CC------ACG-ATTTTATATGGGGCACAC----------------------------CTATTAGCATTATGTTGCAA------------------------------------------------------GTTGTCCGTTTTTATACCCTGAACCCATTAAAAATGGG-TATAAGGGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACG--GGCAGAAGAAGGCATCTCC--GACC-CATAAAGTATAT-----ATATTCTTGATCAGCATCAATA---GCCGAGTCGATCTAGCCATGTTCGTCTGTCTGTCCGTC---CGTCCTTATG----GATGAACGCAAG------GA--------T
droGri2 scaffold_15252:9467769-9468015 - ACCC-TCGCTGGATT---CA------ATA-AAATCC-----------------------------AA--TG--TA-------------------------CGCATTA-AAATC--------ATT-------------TA-----AA--TTCTATTGTTTTTTTATACCCTGAACCCATTAAAAATGGGTAAAAAGGGTATAATGGTTTTGGGCA-------AATGTATGTAACC--GGCAGAAGGAAGCATCTCC--GACCCCATAAAGTATAT-----ATATTCTTGATCAGGGTCAACA---GTCGAGTCAATAGAGCCGTGCCCGTCTTTCCGTCCGTA---CATCTGCAGA-------AAACACGCA------GA--------T
droWil2 scf2_1100000004936:197275-197510 - CCAA---TTTTTAAT---AA------ATC-G--CTAT--A-----C----------------------------TCA--TCG-----------CAAAGTTTGCGTTA-AAT--------------------------TTA-----C------AAACATTTATTATACCATACACCCATA------GGG-TGAAATGGTATATTAAAGTCGCCAA-------AATGTATGTAACA--GGCAGAAGGAAGCATCTCC--GACCCCACAAAGTATAT-----ATATTCTTGATCAGGATCAAAA---ACCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTC---CGTCCG--------TATGAACACCTA------GA--------T
dp5 Unknown_singleton_2647:854-1078 - CGCT-----TGTAAA---TGAC------G-GCATTTTTTG----------------------------------------TT---------TGCTA--ATTGCAGTCAAAGC--------------------------------------AATTTACGTTATTATACCCAATACTCAAA----ATTAG-TATTGGGGTATATTAGATTTGTGG----------TGAAAATAACG--TCCAGAAGGAAACGTTTCC--GATCCCATAAAATATAT-----ATGTTCTTGATCAGCATCAATA---GCCGAG-CGATTAAGCCCTGTCTGTCTGTCTATCCGGC---TA-------G----TCTGAACG---A------GA--------T
droPer2 scaffold_4401:1126-1393 - CCGT-T---TGAAGT---CT------TT--------------------GCAGTATTTTCT-CTAATT--GTTATTTA--TTT-----------------TGATACT-------------------------------ACA----------AATGATTATATTTATACCCGATACTCAAA----ATGAG-TATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTATGTAACG--TCCAGAAGGAATCGTTTCC--GACCCTATAAAGTATAT-----ATATTCTTGATCAGCATCAATA---GCCGAGTCGATTGAGCCCTGTCTGTCTGTCCGTCCGTC---CGGCTGTCCG----TCTGACCGTCTGTCCTTCTGTCCGTCCCC
droAna3 scaffold_13266:16877229-16877450 + CCAC--ATTTATGGT---AA------TT--------------------GCATTATTT----------------------TCA-----------TAATTAT-------------GCCAGCTCTATTGGC--------------------TTATTTGGCATTTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACG--CAGTGAAGGAGACATCTCC--GAACCTATAAAGTATAT-----ATATTCTTGATCAGGATCACCT---CCTGAGTCGATATAAGCATGTCCGTCTGTCCGTCTGTC---CGTCTGTCCG----TCTG-------------------------
droBip1 scf7180000394852:31014-31253 - TT-------TGTAGT---CCACGC--A----TA--------------------ATTT--T-----------------------------------------------------GTCTGCTTTATAAGCTTAACGCTTTCCCTGGAA--AAATACATCTTTTTTATACCCGGTAATCGTA------GAG-TATACGGGTATTTTGTAGTCTTGTG-------AATGTATGTAACA--TAGAGATGGAATCATCTCC--GACCCCATAAAGTACAT-----ATATTCTTGATCATCTCCAACA---GCCTTGTCGATATAGCCGTGCCCGTCTGTCCGTCCGTC---CG------------TATGAACGCGTG------GA--------T
droKik1 scf7180000302686:1419011-1419232 + ATGC-TTTTTGTAGT---AAATAA--A----TA--------------------ATAA--TA----ATGCTTTATATA------------------------------------------------------------------TATAGA-AATTAATTTTATTATACCCTT-----G---------------CAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACG--CAGTGAAGGAGACGTTTCC--GACCCTATAAAGTATAT-----ATATTCTTGATCAGCATCAACA---GCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTC---TGTCTGTCCG----TCTGTCCGTTT-----------------C
droFic1 scf7180000453253:77671-77886 - ACCC-T---TGCAGT---CA------T--------------------------------------------CAAATAT--------------------ATCG-ATCA-AAA--------------------------TGC------------ATAAGGGTTTTATACCC-----TTGCA------GAG-CAAAAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACG--CAGTGAAGGAGACACCTCA--GACCCCATAAAGTATAT-----ATATTCTTGATCAGCATCACGA---GCAGAATCGGAAAACGTCTGTACGTCTGTCCGTCTGTC---CATCTGTCCG----TCTGTCCGTT---------T--------C
droEle1 scf7180000490480:15579-15813 + AGCG-CATATTTTTT---TT----CACCG--T----------------GCACTAC-------------------GTT--TCA-----------CAATTTTTATA-------------------TTGC------------A--------CTGTAATGCATTTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTCAGTCA-------AAAGTTTGCAACG--CAGTGAAGGAGACATTTCC--GACCCTATAAAGTACAT-----ATATTCTTGATCAGCATCACTA---GGCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTC---TGTCCGTCCG----TCTGTCCGTCCGT----CTG--------T
droRho1 scf7180000778292:7400-7623 + CATT-----TTTAAT---TGA----------CATTTTATA------------------T-----------TC---------------------------TTATA-------------------TTTT----------T----------AAATAAACCATTTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATATTGTATTCGTGCA-------AAAGTATGTAACA--GCTAGAAGGAAGCGTTTCC--GACCCTATAAAGTATAT-----ATATTCTTGATCAGGGTCACTA---GCCGAGTCGATATAGCCATGTCCGTCTGTCCTTCTGTC---CGTCCG--------TATGAACGCTGA------GA--------T
droBia1 scf7180000302018:2014-2238 - CGAA--ATTTGTAGC---TT----AACCG-GAGTTATAGGG----------------------------GTCAGA-AT--------------------ATGGCACT-------------------------------TTT----------G-GAACAGTTTTTATACCCTTT------------------CAGAGGGTATAATGATTTTAGTCA-------GAAGTGTGCAACG--CAGTGAAGGAGATGTTTCC--GACCACATAACGTATAT-----ATATTCTTGATCAGCGTCACAA---GACGAGTCGATCTAGCCATGCCAGTCTGTCCGTCCGTC---CGTTTC--------TATGCAAACTAG------TC--------T
droTak1 scf7180000410808:7520-7775 + ATTC-CACATTTGAT---CG------ATAATTATTA------------------A----TTTTAAGC--TCGAAAAA--------------------TTTTGCA--------------------------------TTGGCTGAAAGGAA---GTAAATCATTATACCCGTTACTCGTA------GAG-TAAAAGGGTATATTAGATTCGTGCA-------AAAGTATGTAACA--GCTAGAAGGAAGCGTTTCC--GACCCCATAAAGTATAT-----ATATTCTTGATCAGGGGCACTA---GCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTTTC---CGTCTGTCCGTCTGTATGAACGCTGA------GA--------T
droEug1 scf7180000408863:8744-8971 - CCTT---CTTATAGT---TGAT------G----TTGT--A-----CTC-----------------CA--TG--TT---------------------------CATTT-TATTA--------------------------T-----T------CAGTTGTTTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGTTAA-------AAAGTATGTAACA--GATAGAAGGAAGCGTTTCC--GACCCTATAAAGTATAT-----ATATTCTTGATCGGGATCAATA---GCGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGTC---CGTCCG--------TATGAACGCTGA------CA--------T
dm3 chrU:3006289-3006511 - TGGT--------AATCATTGAA-----------------------------GTAT-----------------ATATG---T-----------------AT-----GT-AAA-------T------------------TCA----------ATGGAATATTTTTATACCCGTAACTTGTG------GAG-T--AAGGGTATATTAGATTCTTTGA-------AAAGTATGTAACA--GGCAGAAGGAAGCGTTTC----ACCATATAAAGTATAT---TTATATTCTTGATCAGGATCAGGAACCGCCGATTCGATCTGGCCATGTACGTCTGTCCGTCAGTGACGCG------------CATGAATG----------GA---TTAACG
droSim2 x:20435764-20436008 + CTCC--ATTTTTCGG---GC------TTG-GATTTCTGTT------------------GT-CTCATA--TGTTTTTA--TTT--------------------------TAC----------------------TACTTGCGT---A--AA---GTACAT-TTTTTACCCGTTTCTCGTA------GGA-TAAAATGGTATGCTAGATTCGTTGA-------AAAGTATGTAACTGGGGGAGAAGGAAGCGTGAAAAGTACATTATAATGTATAT-----ATATTCTTGATCAGGATCAATA---ACCGAGTCGATCTGGCTATGTCCGTCTGTGTGTCCGTT---CG------------TATGTAAGTCGA------GA--------T
droSec2 scaffold_18:1188753-1188965 - GTCA-TAC--------------------------------------------------------------------CA--------------------AAGACACTA-GAATA--------------------------A------------TTATTATTATTATACCCGTTACTCGTA------CAG-TAAAAGGCTATACTAGATTCGTTGA-------AAAGTATGTGACA--GGCAGAAGGAAGCGTTTCC--GACCATATAAAGTGTAC-----ATATTCTTGATCAGGATCAATA---GCCGAGTCGATCTGACACTATCCGTCTGTCTGTCCGTC---CGTCTGTTTG----TATGACTGTCGA------GA--------T
droYak3 v2_chr2h_random_004:877957-878210 - GGCC-TAATTATAAT---CG------GTCGGTGTTCT----------------------T-CTCAAC--TATAAATA--TTG--------------------------TAA----------------------TCATTAAGTAAAA--TAAAATTATATTTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACA--GGCAGAAGGAAGCGTTTCC--GACCATATAAAGTATAT-----ATATTCTTGATCAGGATCAGTA---GCCGAGTCGATCTGGCCATGTCCGTCTGTCCGTCCGTC---TGTCCGTCCG----TATGAACGTCGA------GA--------T
droEre2 scaffold_4770:11724520-11724761 - AATTTCACTTTTAGT---AGAG------C----TGGG--A-----TGC---------------------CTAATAAAA--------------------ACTACATCA-AAATA--------------------------A-----T------CATAGTTCTTTATTCCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGTTGA-------AAAGCGTGTAACA--GGCAGAAGGAAGCGTTTCC--GACCATATAAGGTATATATATTATATTCTTGACAAGGATCAATA---GCCGAGTCGGACTGGCCATGTCCGACTGTCCGTCCGTC---TGTCCA--------TA-GAACGCCTC------GA--------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
ACCC-CATTTGTAGT---CA------ATG-GCATTCTGTGC----------------------------GTCATATAT--------------------ATTGCACTC-AAG--------------------------TGA----------GTAATACGTTTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTTTAATGGTTTTGT-TA-------AAAGTATGTAACA--GGCAGAAGGAGGCGTGGCA--GACCCCACAAAGTATAT-----ACATTCTTGATCAGGGCGACGA---GCTGAGTCGATTTGGCCCTGTCCGTCTGTCTGTCCGTC---CGTCCGTATG----TATGAACGCGTC------GA--------TSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................GTAACA--GGCAGAAGGAGGCGTGG.......................................................................................................................................23200.50101000000
........................................................................................................................................................................................TGGGAAATCAGGGTTTAATGGTTT....................................................................................................................................................................................24150.274110011
........................................................................................................................................................................................TGGGAAATCAGGGTTTAATGGTT.....................................................................................................................................................................................23150.274300010
........................................................................................................................................................................................TGGGAAATCAGGGTTTAATGGTTTT...................................................................................................................................................................................25130.233300000
..................................................................................................................................................................................................................................................................ACCCCACAAAGTATAT-----ACATTCTTGATC.................................................................................................2890.222100010
..................................................................................................................................................................................................................................................................ACCCCACAAAGTATAT-----ACATTCTTG....................................................................................................25100.202200000
..................................................................................................................................................................................................................................................................ACCCCACAAAGTATAT-----ACATTCTTGA...................................................................................................26100.101100000
..................................................................................................................................................................................................................................................................ACCCCACAAAGTATAT-----ACATTCTTGAT..................................................................................................27100.101100000
...................................................................................................................................................................................................................................................................CCCCACAAAGTATAT-----ACATTCTTG....................................................................................................24100.101100000
........................................................................................................................................................................................TGGGAAATCAGGGTTTAATGGTTTTGT-................................................................................................................................................................................27100.101000010
.................................................................................................................................................................................................................................................................GACCCCACAAAGTATAT-----ACATTCTTGA...................................................................................................27100.101100000
..................................................................................................................................................................................................................................................................ACCCCACAAAGTATAT-----ACATTC.......................................................................................................22110.091100000
..................................................................................................................................................................................TGAAAATGGGAAATCAGGGTT.............................................................................................................................................................................................21120.081100000
.........................................................................................................................................................................................................................................................................AAAGTATAT-----ACATTCTTGATCAGGG.............................................................................................25140.071000001
.........................................................................................................................................................................................GGGAAATCAGGGTTTAATGGTT.....................................................................................................................................................................................22150.071100000
.............................................................................................................................................................................................................................................................................................................................GGCCCTGTCCGTCTGTCTGTCCGTC---CGTC.......................................29200.051100000
................................................................................................................................................................................................................................................................................AT-----ACATTCTTGATCAGGGCG...........................................................................................20200.051100000
...........................................................................................................................................................................................................................................................................................................................TTGGCCCTGTCCGTCTGTCTGTCC.................................................24200.051000010
.....................................................................................................................................................................................................................................................................................................................GTCGATTTGGCCCTGTCCGTC..........................................................21200.051000010
droVir3
ACTC-CT--TATA-T---CC------ACG-ATTTTATATGGGGCACAC----------------------------CTATTAGCATTATGTTGCAA------------------------------------------------------GTTGTCCGTTTTTATACCCTGAACCCATTAAAAATGGG-TATAAGGGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACG--GGCAGAAGAAGGCATCTCC--GACC-CATAAAGTATAT-----ATATTCTTGATCAGCATCAATA---GCCGAGTCGATCTAGCCATGTTCGTCTGTCTGTCCGTC---CGTCCTTATG----GATGAACGCAAG------GA--------TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................TTAAAAATGGG-TATAAGGGTATAT..........................................................................................................................................................................................24202.65530000000000000000000000005300000000000000000000000000000000000000
.................................................................................................................................................................................TTAAAAATGGG-TATAAGGGTATATT.........................................................................................................................................................................................25200.65130000000000000000000000000000000000013000000000000000000000000000
.........................................................................................................................................................................................................................TCCAAATGTATGTAACG--GGCAGAAG................................................................................................................................................25130.466001000000000000000000000010020100001000000000000000000000000000
........................................................................................................................................................................................................................................................................TAAAGTATAT-----ATATTCTTGATCAGCA.............................................................................................26200.459000000000000000000000000000090000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................T-----ATATTCTTGATCAGCATCAATA---GC..................................................................................25200.459009000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TCCAAATGTATGTAACG--GGCAGA..................................................................................................................................................23160.315001000000000000000000000020001000010000000000000000000000000000
.................................................................................................................................................................................TTAAAAATGGG-TATAAGGGTATATTG........................................................................................................................................................................................26200.255000000000000000000000000000000500000000000000000000000000000000
.................................................................................................................................................................................TTAAAAATGGG-TATAAGGG...............................................................................................................................................................................................19200.255000000000000000000000000005000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AT-----ATATTCTTGATCAGCATCAATA---G...................................................................................25200.255000000000000000000000000003002000000000000000000000000000000000
.........................................................................................................................................................................................................................TCCAAATGTATGTAACG--GGC.....................................................................................................................................................20170.183000010000000000000000000010100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AT-----ATATTCTTGATCAGCATCAATA---GC..................................................................................26200.153000000000000000000000000003000000000000000000000000000000000000
.........................................................................................................................................................................................................................TCCAAATGTATGTAACG--GGCAGAA.................................................................................................................................................24160.132001000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................TCCAAATGTATGTAACG--GGCAG...................................................................................................................................................22160.132002000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TTAAAAATGGG-TATAAGGGT..............................................................................................................................................................................................20200.102000000000000200000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................AGTCGATCTAGCCATGTTCGTC..........................................................22200.102000000000000000000000000000010000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATA---GCCGAGT.............................................................................25200.102000000000000000000000000000000020000000000000000000000000000000
..............................................................................................................................................................................................................................................................................ATAT-----ATATTCTTGATCAGC..............................................................................................19200.102000000000000000000000010001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................AGGCATCTCC--GACC-C.............................................................................................................................15200.102000000000000000000000000000000000000000000000000000000000000002
...............................................................................................................................................................................................................................................................................TAT-----ATATTCTTGATCAGCATCAATA---G...................................................................................26200.102000000000000000000000000000200000000000000000000000000000000000
.........................................................................................................................................................................................................................................................ATCTCC--GACC-CATAAAGTATAT-----.............................................................................................................22110.091000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................CCAAATGTATGTAACG--GGCAGA..................................................................................................................................................22160.061001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TCCAAATGTATGTAACG--GGCA....................................................................................................................................................21170.061000000000000000000000000100000000000000000000000000000000000000
......................................................................................................................................................................................................................AAATCCAAATGTATGTAACG--GGC.....................................................................................................................................................23170.061001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TCCAAATGTATGTAACG--GG......................................................................................................................................................19170.061000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TCCAAATGTATGTAACG--G.......................................................................................................................................................18190.051000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................ATGGG-TATAAGGGTATATTGTATT....................................................................................................................................................................................24200.051000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATA---G...................................................................................18200.051000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................AGTCGATCTAGCCATGTT..............................................................18200.051000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................ATCAGCATCAATA---GCCGAGTC............................................................................21200.051000010000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................TATAT-----ATATTCTTGATCAGCATCAAT........................................................................................26200.051000010000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATA---GCC.................................................................................22200.051000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TATTCTTGATCAGCATCAATA---GCCG................................................................................25200.051000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................ATA---GCCGAGTCGATCTAGCCA..................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATGTTCGT...........................................................25200.051000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TGTTCGTCTGTCTGTCCGTC---C..........................................21200.051000000100000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................GGCAGAAGAAGGCATCTCC--GAT................................................................................................................................22200.051000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................TAAGGGTATATTGTATTTGT.................................................................................................................................................................................20200.051000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TGTTCGTCTGTCTGTCCGTC---...........................................20200.051000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTTCGTCTGTCTG....................................................27200.051000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGTTCGTC..........................................................19200.051000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................TTGATCAGCATCAATA---GCCGAGTCGA..........................................................................26200.051000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CAGCATCAATA---GCCGAGTCGATCTAGC....................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TA---GCCGAGTCGATCTAGCCATGTT..............................................................24200.051000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TCAATA---GCCGAGTCGATCTAG.....................................................................21200.051000000000000000000000000000000100000000000000000000000000000000
.........................................................................................................................................................................................................................................................................AAAGTATAT-----ATATTCTTGATCAGC..............................................................................................24200.051000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATA---GCCGAG..............................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCATG................................................................20200.051010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATA---GCCGAGTC............................................................................27200.051000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATGTTCGTCTGTC......................................................25200.051000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TATTCTTGATCAGCATCAATA---....................................................................................21200.051000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGT...............................................................19200.051000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................GTATTTGTGCAAAATCCAA......................................................................................................................................................................19200.051000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................AATGGG-TATAAGGGTATATTGT.......................................................................................................................................................................................22200.051000000000000000000000000000000100000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CAGCATCAATA---GCCGAGTCGATC........................................................................23200.051000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTTCGTC..........................................................24200.051000001000000000000000000000000000000000000000000000000000000000
droGri2
ACCC-TCGCTGGATT---CA------ATA-AAATCC-----------------------------AA--TG--TA-------------------------CGCATTA-AAATC--------ATT-------------TA-----AA--TTCTATTGTTTTTTTATACCCTGAACCCATTAAAAATGGGTAAAAAGGGTATAATGGTTTTGGGCA-------AATGTATGTAACC--GGCAGAAGGAAGCATCTCC--GACCCCATAAAGTATAT-----ATATTCTTGATCAGGGTCAACA---GTCGAGTCAATAGAGCCGTGCCCGTCTTTCCGTCCGTA---CATCTGCAGA-------AAACACGCA------GA--------TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CCAA---TTTTTAAT---AA------ATC-G--CTAT--A-----C----------------------------TCA--TCG-----------CAAAGTTTGCGTTA-AAT--------------------------TTA-----C------AAACATTTATTATACCATACACCCATA------GGG-TGAAATGGTATATTAAAGTCGCCAA-------AATGTATGTAACA--GGCAGAAGGAAGCATCTCC--GACCCCACAAAGTATAT-----ATATTCTTGATCAGGATCAAAA---ACCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTC---CGTCCG--------TATGAACACCTA------GA--------TSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................TAACA--GGCAGAAGGAAGCATCTCC--GAC................................................................................................................................27200.7515000150
...............................................................................................................................................................................................................................TGTATGTAACA--GGCAGAAGGAAG............................................................................................................................................23200.25500050
...............................................................................................................................................................................................................................TGTATGTAACA--GGCAGAAGGAAGCATCT.......................................................................................................................................28200.15303000
.................................................................................................................................................................................................................................................................................T-----ATATTCTTGATCAGGATCAAAA---ACCG................................................................................27200.10202000
....................................................................................................................................................................................................................................GTAACA--GGCAGAAGGAAGCATCTCC--...................................................................................................................................25200.10202000
....................................................................................................................................................................................................................................................................CCCACAAAGTATAT-----ATATTCTTGATC.................................................................................................26200.05101000
........................................................................................................................................................................................................................................................................................................................................TCTGTCCGTCCGTC---CGTCCG--------TA...........................22200.05100001
....................................................................................................................................................................................................................................................................................................................................................TC---CGTCCG--------TATGAACACCTA------GA--------.22200.05101000
..................................................................................................TTTGCGTTA-AAT--------------------------TTA-----C------AAACATTTA...................................................................................................................................................................................................................................25200.05101000
...............................................................................................................................................................................................................................................................................................................................................GTCCGTC---CGTCCG--------TATGAACACCTA------GA--------A28200.05101000
..............................................................................................................................................................TTATTATACCATACACCCA...................................................................................................................................................................................................................19200.05101000
................................................................................................................................................................ATTATACCATACACCCATA------GGG-.......................................................................................................................................................................................................22200.05100001
...............................................................................................................................................................................................................................................................................TAT-----ATATTCTTGATCAGGATC...........................................................................................21200.05100001
dp5
CGCT-----TGTAAA---TGAC------G-GCATTTTTTG----------------------------------------TT---------TGCTA--ATTGCAGTCAAAGC--------------------------------------AATTTACGTTATTATACCCAATACTCAAA----ATTAG-TATTGGGGTATATTAGATTTGTGG----------TGAAAATAACG--TCCAGAAGGAAACGTTTCC--GATCCCATAAAATATAT-----ATGTTCTTGATCAGCATCAATA---GCCGAG-CGATTAAGCCCTGTCTGTCTGTCTATCCGGC---TA-------G----TCTGAACG---A------GA--------TSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................TTGATCAGCATCAATA---GCCGAG-C............................................................................23152.1332011210000000
..............................................................................................................................................................................................................TTTGTGG----------TGAAAATAACG--TCCAGA..................................................................................................................................................2421.5030200000010
......................................................................................................................................................................................................................................................................................................................................TGTCTGTCTATCCGGC---TA-------G----TCTGAA.......................2521.0020100000100
...............................................................................................................................................................................................................................................................................TAT-----ATGTTCTTGATCAGCATC...........................................................................................21100.6060501000000
...........................................................................................................................................................................................................................................................................................................................TAAGCCCTGTCTGTCTGTCTATCC.................................................2430.3310100000000
.................................................................................................................................................................................................................................................................................T-----ATGTTCTTGATCAGCATCAA.........................................................................................21100.2020200000000
........................................................................................................................................................................................................................................CG--TCCAGAAGGAAACGTTTC......................................................................................................................................2070.1410000001000
.............................................................................................................................................................................................................................................................................TATAT-----ATGTTCTTGATCAGCAT............................................................................................2280.1310100000000
.............................................................................................................................................................................................................................................................................TATAT-----ATGTTCTTGATCAGCA.............................................................................................2190.1110100000000
.........................................................................................................................................................................................................................................................................................GTTCTTGATCAGCATCAATA---GC..................................................................................2290.1110100000000
.............................................................................................................................................................................................................................................................................TATAT-----ATGTTCTTGATCA................................................................................................18100.1010100000000
............................................................................................................................................................................................................................................TCCAGAAGGAAACGTTTCC--G..................................................................................................................................20100.1010000001000
........................................................................................................................................................................................TTAG-TATTGGGGTATATTAG.......................................................................................................................................................................................20110.0910100000000
.................................................................................................................................................................................................................................................................................T-----ATGTTCTTGATCAGCATCA..........................................................................................20110.0910100000000
..............................................................................................................................................................................................................................................................................ATAT-----ATGTTCTTGATCAGCA.............................................................................................20110.0910100000000
........................................................................................................................................................................................................................................................................................TGTTCTTGATCAGCATCAATA---....................................................................................21110.0910100000000
........................................................................................................................................................................................................................................................................................TGTTCTTGATCAGCATCAAT........................................................................................20110.0910001000000
.........................................................................................................................................................................................................................................................................................GTTCTTGATCAGCATCAAT........................................................................................19120.0810100000000
............................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATA---GCCGAG-C............................................................................24150.0710100000000
..............................................................................................................................................................................................................................................................................................TGATCAGCATCAATA---GCCGAG-C............................................................................22150.0710100000000
..................................................................................................................................................................................................................................................................................................CAGCATCAATA---GCCGAG-C............................................................................18170.0610100000000
droPer2
CCGT-T---TGAAGT---CT------TT--------------------GCAGTATTTTCT-CTAATT--GTTATTTA--TTT-----------------TGATACT-------------------------------ACA----------AATGATTATATTTATACCCGATACTCAAA----ATGAG-TATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTATGTAACG--TCCAGAAGGAATCGTTTCC--GACCCTATAAAGTATAT-----ATATTCTTGATCAGCATCAATA---GCCGAGTCGATTGAGCCCTGTCTGTCTGTCCGTCCGTC---CGGCTGTCCG----TCTGACCGTCTGTCCTTCTGTCCGTCCCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................................................TCCGTC---CGGCTGTCCG----TCTG.........................2020.501010000
............................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATA---GCC.................................................................................20200.459090000
................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTA.................................................................................................................................................................19120.334010003
..............................................................................................................................................................................................................................................................................................................................................................................GTCTGTCCTTCTGTCCGTCC..2060.171010000
...............................................................................................................................................................................................................................................................................................................................CCCTGTCTGTCTGTCCGTCC.................................................20200.153030000
.....................................................................................................................................................................................................................TAAAAGTGGATGTATGTAACG--........................................................................................................................................................21120.081000001
..............................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTA.................................................................................................................................................................21120.081000001
.........................................................................................................................................................................................................................AGTGGATGTATGTAACG--TC......................................................................................................................................................19130.081000001
................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTAA................................................................................................................................................................20160.061010000
......................................................................................................................................................................................................................................................................................................ATCAATA---GCCGAGTCGATTGA......................................................................21200.051100000
droAna3
CCAC--ATTTATGGT---AA------TT--------------------GCATTATTT----------------------TCA-----------TAATTAT-------------GCCAGCTCTATTGGC--------------------TTATTTGGCATTTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACG--CAGTGAAGGAGACATCTCC--GAACCTATAAAGTATAT-----ATATTCTTGATCAGGATCACCT---CCTGAGTCGATATAAGCATGTCCGTCTGTCCGTCTGTC---CGTCTGTCCG----TCTG-------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................TGTGCAACG--CAGTGAAGGAGACAT.........................................................................................................................................24200.80160000160
.....................................................................................................................................................................................................................................CAACG--CAGTGAAGGAGACA..........................................................................................................................................19200.459000009
.....................................................................................................................................................................................................................................................................................................GATCACCT---CCTGAGTCGATAT.......................................................................21200.357700000
.......................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCACCT---CC..................................................................................24200.306600000
......................................................................................................................................................................................................................................................................................................................TCGATATAAGCATGTCCGTCTGTCCG....................................................26200.255050000
...............................................................................................................................................................................................................................................................................................................................................GTCTGTC---CGTCTGTCCG----TCTG-------------------------21200.204400000
........................................................................................................................................................................................................................................CG--CAGTGAAGGAGACATCTCC--GA.................................................................................................................................23200.153300000
..........................................................................................................................................................................................................................................................................................................................TATAAGCATGTCCGTCTGTCCGTCTGTC---...........................................28200.153030000
.....................................................................................................................................................................................................................................................................................................................GTCGATATAAGCATGTCCGTCTGTCCGT...................................................28200.153300000
..........................................................................................................................................................................................................................................................................................................................TATAAGCATGTCCGTCTGTCCGTCT.................................................25200.153003000
............................................................................................................................................................................................................................................................................................................T---CCTGAGTCGATATAAGCATGTCCGTCTG........................................................29200.102200000
.............................................................................................................................................................................................................................................................................................................................AAGCATGTCCGTCTGTCCGTCTG................................................23200.102200000
..................................................................................................................................................................................................................GTCA-------AAAGTGTGCAACG--CAGT....................................................................................................................................................21200.102020000
............................................................................................................................................................................................................................................CAGTGAAGGAGACATCTCC--GAACCT.............................................................................................................................25190.051100000
.................................................................................................................................................................................................................................................................................................................CTGAGTCGATATAAGCATGTC..............................................................21200.051000010
................................................................................................................................................................................GC-------------AGAGGGTATTATAATTTTGGTC...............................................................................................................................................................................24200.051001000
................................................................................................................................................................................................................................................GAAGGAGACATCTCC--GAACCT.............................................................................................................................21200.051100000
..................................................................................................................................................................................................................................................................................................................TGAGTCGATATAAGCATGTCCGTCTGTC......................................................28200.051100000
.....................................................................................................................................................................................................................A-------AAAGTGTGCAACG--CAGTGA..................................................................................................................................................20200.051010000
......................................................................................................................................................................................................................................................................................................ATCACCT---CCTGAGTCGATATA......................................................................21200.051000010
...........................................................................................................................................................................................................................................................................................TCTTGATCAGGATCACCT---CC..................................................................................20200.051100000
...........................................................................................................................................................................................................................................................................................................................ATAAGCATGTCCGTCTGTCCG....................................................21200.051000100
................................................................................................................................................................................................................................................................................................................................CATGTCCGTCTGTCCGTCTGT...............................................21200.051010000
............................................................................................................................................................................................................ATTTTGGTCA-------AAAGTGTGCAACG--CAG.....................................................................................................................................................26200.051000001
........................................................................................................................................................................................................................................................................................TATTCTTGATCAGGATCACCT---CCTGA...............................................................................26200.051010000
....................................................................................................................................................................................................................................GCAACG--CAGTGAAGGAGACA..........................................................................................................................................20200.051000010
.......................................................................................................................................................................................................................................................................ATAAAGTATAT-----ATATTCTTGATCAGG..............................................................................................26200.051010000
droBip1
TT-------TGTAGT---CCACGC--A----TA--------------------ATTT--T-----------------------------------------------------GTCTGCTTTATAAGCTTAACGCTTTCCCTGGAA--AAATACATCTTTTTTATACCCGGTAATCGTA------GAG-TATACGGGTATTTTGTAGTCTTGTG-------AATGTATGTAACA--TAGAGATGGAATCATCTCC--GACCCCATAAAGTACAT-----ATATTCTTGATCATCTCCAACA---GCCTTGTCGATATAGCCGTGCCCGTCTGTCCGTCCGTC---CG------------TATGAACGCGTG------GA--------TSizeHit CountTotal NormTotal
No Reads
droKik1
ATGC-TTTTTGTAGT---AAATAA--A----TA--------------------ATAA--TA----ATGCTTTATATA------------------------------------------------------------------TATAGA-AATTAATTTTATTATACCCTT-----G---------------CAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACG--CAGTGAAGGAGACGTTTCC--GACCCTATAAAGTATAT-----ATATTCTTGATCAGCATCAACA---GCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTC---TGTCTGTCCG----TCTGTCCGTTT-----------------CSizeHit CountTotal NormTotal
No Reads
droFic1
ACCC-T---TGCAGT---CA------T--------------------------------------------CAAATAT--------------------ATCG-ATCA-AAA--------------------------TGC------------ATAAGGGTTTTATACCC-----TTGCA------GAG-CAAAAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACG--CAGTGAAGGAGACACCTCA--GACCCCATAAAGTATAT-----ATATTCTTGATCAGCATCACGA---GCAGAATCGGAAAACGTCTGTACGTCTGTCCGTCTGTC---CATCTGTCCG----TCTGTCCGTT---------T--------CSizeHit CountTotal NormTotal
No Reads
droEle1
AGCG-CATATTTTTT---TT----CACCG--T----------------GCACTAC-------------------GTT--TCA-----------CAATTTTTATA-------------------TTGC------------A--------CTGTAATGCATTTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTCAGTCA-------AAAGTTTGCAACG--CAGTGAAGGAGACATTTCC--GACCCTATAAAGTACAT-----ATATTCTTGATCAGCATCACTA---GGCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTC---TGTCCGTCCG----TCTGTCCGTCCGT----CTG--------TSizeHit CountTotal NormTotal
No Reads
droRho1
CATT-----TTTAAT---TGA----------CATTTTATA------------------T-----------TC---------------------------TTATA-------------------TTTT----------T----------AAATAAACCATTTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATATTGTATTCGTGCA-------AAAGTATGTAACA--GCTAGAAGGAAGCGTTTCC--GACCCTATAAAGTATAT-----ATATTCTTGATCAGGGTCACTA---GCCGAGTCGATATAGCCATGTCCGTCTGTCCTTCTGTC---CGTCCG--------TATGAACGCTGA------GA--------TSizeHit CountTotal NormTotal
No Reads
droBia1
CGAA--ATTTGTAGC---TT----AACCG-GAGTTATAGGG----------------------------GTCAGA-AT--------------------ATGGCACT-------------------------------TTT----------G-GAACAGTTTTTATACCCTTT------------------CAGAGGGTATAATGATTTTAGTCA-------GAAGTGTGCAACG--CAGTGAAGGAGATGTTTCC--GACCACATAACGTATAT-----ATATTCTTGATCAGCGTCACAA---GACGAGTCGATCTAGCCATGCCAGTCTGTCCGTCCGTC---CGTTTC--------TATGCAAACTAG------TC--------TSizeHit CountTotal NormTotal
No Reads
droTak1
ATTC-CACATTTGAT---CG------ATAATTATTA------------------A----TTTTAAGC--TCGAAAAA--------------------TTTTGCA--------------------------------TTGGCTGAAAGGAA---GTAAATCATTATACCCGTTACTCGTA------GAG-TAAAAGGGTATATTAGATTCGTGCA-------AAAGTATGTAACA--GCTAGAAGGAAGCGTTTCC--GACCCCATAAAGTATAT-----ATATTCTTGATCAGGGGCACTA---GCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTTTC---CGTCTGTCCGTCTGTATGAACGCTGA------GA--------TSizeHit CountTotal NormTotal
No Reads
droEug1
CCTT---CTTATAGT---TGAT------G----TTGT--A-----CTC-----------------CA--TG--TT---------------------------CATTT-TATTA--------------------------T-----T------CAGTTGTTTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGTTAA-------AAAGTATGTAACA--GATAGAAGGAAGCGTTTCC--GACCCTATAAAGTATAT-----ATATTCTTGATCGGGATCAATA---GCGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGTC---CGTCCG--------TATGAACGCTGA------CA--------TSizeHit CountTotal NormTotal
No Reads
dm3
TGGT--------AATCATTGAA-----------------------------GTAT-----------------ATATG---T-----------------AT-----GT-AAA-------T------------------TCA----------ATGGAATATTTTTATACCCGTAACTTGTG------GAG-T--AAGGGTATATTAGATTCTTTGA-------AAAGTATGTAACA--GGCAGAAGGAAGCGTTTC----ACCATATAAAGTATAT---TTATATTCTTGATCAGGATCAGGAACCGCCGATTCGATCTGGCCATGTACGTCTGTCCGTCAGTGACGCG------------CATGAATG----------GA---TTAACGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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...............................................................................................................................................................................................................................................................................................GATCAGGATCAGGAACCGCCGATT.............................................................................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................AGTGACGCG------------CATGAATG----------GG---......19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000200001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TCAGGAACCGCCGATTCGATCTGGCCA..................................................................2750.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................ATCAGGAACCGCCGATTCGATCTGG.....................................................................2550.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TAACA--GGCAGAAGGAAGCGTTTC----A.................................................................................................................................24100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................ATGTAACA--GGCAGAAGGAAGC...........................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TTCGATCTGGCCATGTACGTC..........................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TCAGGAACCGCCGATTCGATCTGGCC...................................................................2650.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TGATCAGGATCAGGAACCGCCGAT..............................................................................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAGGAACCGCC.................................................................................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TTCGATCTGGCCATGTACGTA..........................................................2150.2010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................GATCAGGATCAGGAACCGCCGAT..............................................................................2350.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................GATTCGATCTGGCCATGTACGTCTGT.......................................................2650.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................TCTTTGA-------AAAGTATGTAACA--GGCA....................................................................................................................................................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TTGATCAGGATCAGGAACCGCCGAC..............................................................................2550.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GCCGATTCGATCTGGCCATGTACGTC..........................................................2650.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................................................................................................................................................................GATTCGATCTGGCCATGTACGTC..........................................................2350.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TTGA-------AAAGTATGTAACA--GGCA....................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CCGATTCGATCTGGCCATGTA..............................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ATTCGATCTGGCCATGTACGTCTG........................................................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TTGATCAGGATCAGGAACCGCCGAA..............................................................................2550.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................AGTGACGCG------------CATGAATG----------GA---TTAAG.24200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TTCGATCTGGCCATGTACGTCTGTCCGT...................................................2850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TAACA--GGCAGAAGGAAGCGTTTC----..................................................................................................................................23200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000
............................................................................................................................................................................................................................................................................................CTTGATCAGGATCAGGAACCGCATC...............................................................................2550.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................GTATGTAACA--GGCAGAAGGAAGCGT.........................................................................................................................................25200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................AGTGACGCG------------CATGAATC----------...........17200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TGATCAGGATCAGGAACCGCCGA...............................................................................2350.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TGATCAGGATCAGGAACCGCCG................................................................................2250.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TCAGTGACGCG------------CATGAATG----------GA---TTAAC.26110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................................................................................................................................................................................................................................................................................................................................................TCAGTGACGCG------------CATGAATG----------GA---TTA...24110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CAGGATCAGGAACCGCCGATTCGATC........................................................................2660.1710000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TCAGGATCAGGAACCGCCGATTCGAT.........................................................................2660.1710000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CTCC--ATTTTTCGG---GC------TTG-GATTTCTGTT------------------GT-CTCATA--TGTTTTTA--TTT--------------------------TAC----------------------TACTTGCGT---A--AA---GTACAT-TTTTTACCCGTTTCTCGTA------GGA-TAAAATGGTATGCTAGATTCGTTGA-------AAAGTATGTAACTGGGGGAGAAGGAAGCGTGAAAAGTACATTATAATGTATAT-----ATATTCTTGATCAGGATCAATA---ACCGAGTCGATCTGGCTATGTCCGTCTGTGTGTCCGTT---CG------------TATGTAAGTCGA------GA--------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................TGTGTCCGTT---CG------------TATGTAAGTCGA------GA--------.2613.00300000011001000000
................................................................................................................................................................................................................................................................................................................................TATGTCCGTCTGTGTGTCCGTT---CG------------TA...........................2612.00200000010100000000
......................................................................................................................................................................................................................................................AGCGTGAAAAGTACATTATAATGTATA...................................................................................................................2711.00100000000100000000
.....................................................................................................................................................................................................................A-------AAAGTATGTAACTGGGGGAGA..................................................................................................................................................2211.00100000010000000000
.............................................................................................................................................................................................TAAAATGGTATGCTAGATTCGTTGA-------AA.....................................................................................................................................................................2711.00100000010000000000
...................................................................................................................................................................................................................................................................................................AGGATCAATA---ACCGAGTCGATCTGGCTA..................................................................2811.00100000000010000000
...............................................................................................................................................................................................................TCGTTGA-------AAAGTATGTAACTGGGGGA....................................................................................................................................................2611.00100000001000000000
.............................................................................................................................................................................................TAAAATGGTATGCTAGATTCGTTGA-------.......................................................................................................................................................................2511.00100000010000000000
..............................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACTGGGGG.....................................................................................................................................................2611.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTGTGTCCGTT---CG------------TATA.........................2611.00100000000100000000
..........................................................................................................................................................TACAT-TTTTTACCCGTTTCTCGTA------GGA-.......................................................................................................................................................................................................2711.00100000010000000000
..............................................................................................................................................................T-TTTTTACCCGTTTCTCGTA------GGA-TAAAA..................................................................................................................................................................................................2811.00100000000001000000
............................................................................................................................................................................................................................................................................GTATAT-----ATATTCTTGATCAGGATCAAT........................................................................................27200.9018000120006000000000
..................................................................................................................................................................................................................................................................................................CAGGATCAATA---ACCGAGTCGATCTGG.....................................................................2630.67200000010100000000
..............................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACTGG........................................................................................................................................................2350.60300200000010000000
........................................................................................................................................................................................................................................................................TAATGTATAT-----ATATTCTTGATCAGGAT............................................................................................2740.50200000001000010000
........................................................................................................................................................................................................................................................................TAATGTATAT-----ATATTCTTGATCAGGA.............................................................................................2640.50200000001100000000
...........................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATA---ACCGAGT.............................................................................2550.40200000000020000000
............................................................................................................................................................................................................................................................................GTATAT-----ATATTCTTGATCAGGAT............................................................................................23200.35700000000050020000
..................................................................................................................................................................................................................................................................................................CAGGATCAATA---ACCGAGTCGAT.........................................................................2260.33200000020000000000
......................................................................................................................................................................................................................................................................TATAATGTATAT-----ATATTCTTGATCAGGAT............................................................................................2940.25100000001000000000
................................................................................................................................................................................................AATGGTATGCTAGAA.....................................................................................................................................................................................1580.25200000010010000000
...........................................................................................................................................................................................................................................................................TGTATAT-----ATATTCTTGATCAGGAT............................................................................................2440.25100000001000000000
............................................................................................................................................................................................................................................................................GTATAT-----ATATTCTTGATCAGGATCAATA---....................................................................................28200.20400010001000020000
............................................................................................................................................................................................................................................................................GTATAT-----ATATTCTTGATCAGGATC...........................................................................................24200.20400010000030000000
..................................................................................................................................................................................................................................................................................................CAGGATCAATA---ACCGAGTCGATCTG......................................................................2550.20100000000100000000
..........................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATA---ACCGAGT.............................................................................2650.20100000000100000000
..................................................................................................................................................................................................................................................................................................CAGGATCAATA---ACCGAGTCGATC........................................................................2350.20100000010000000000
..........................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATA---ACCGAG..............................................................................2550.20100000010000000000
.......................................................................................................................................................................................................TGCTAGATTCGTTGA-------AAAGTATGT..............................................................................................................................................................2460.17100000000001000000
....................................................................................................................................................................................................GTATGCTAGATTCGTTGA-------AAAGTATGT..............................................................................................................................................................2760.17100000000001000000
.....................................................................................................................................................................................................TATGCTAGATTCGTTGA-------AAAGTATGT..............................................................................................................................................................2660.17100000000100000000
.....................................................................................................................................................................................................TATGCTAGATTCGTTGA-------AAAGTATG...............................................................................................................................................................2560.17100000010000000000
..............................................................................................................................................................................................................................................................................................TGATCAGGATCAATA---ACCGAGT.............................................................................2260.17100000000100000000
............................................................................................................................................................................................................................................................................GTATAT-----ATATTCTTGATCAGGATCAA.........................................................................................26200.15300000000010020000
........................................................................................................................................................................................................GCTAGATTCGTTGA-------AAAGTAT................................................................................................................................................................2170.14100000000001000000
..........................................................................................................................................................................................................................................................................ATGTATAT-----ATATTCTTGATCA................................................................................................2170.14100000001000000000
.....................................................................................................................................................................................................TATGCTAGATTCGTTGA-------AAAG...................................................................................................................................................................2170.14100000000001000000
.......................................................................................................................................................................................................TGCTAGATTCGTTGA-------AAAGT..................................................................................................................................................................2070.14100000000001000000
..............................................................................................................................................................................................................................................................................ATAT-----ATATTCTTGATCAGGAT............................................................................................21200.10200000000002000000
..............................................................................................................................................................................................................................................................................ATAT-----ATATTCTTGATCAGGATCA..........................................................................................23200.10200000002000000000
............................................................................................................................................................................................................................................................................GTATAT-----ATATTCTTGATCAGGATCA..........................................................................................25200.10200000000000020000
...............................................................................................................................................................................................................................................................................TAT-----ATATTCTTGATCAGGATCAATA---....................................................................................25200.05100000000001000000
..............................................................................................................................................................................................................................................................................ATAT-----ATATTCTTGATCAGGATCAAT........................................................................................25200.05100100000000000000
.............................................................................................................................................................................................................................................................................TATAT-----ATATTCTTGATCAGGATCAA.........................................................................................25200.05100010000000000000
..............................................................................................................................................................................................................................................................................ATAT-----ATATTCTTGATCAGGATC...........................................................................................22200.05100000001000000000
.........................................................................................................................................................................................................CTAGATTCGTTGA-------AAAGTATGTAA............................................................................................................................................................24200.05100100000000000000
.................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTGGC....................................................................15200.05100000001000000000
.............................................................................................................................................................................................................................................................................TATAT-----ATATTCTTGATCAGGAT............................................................................................22200.05100000000001000000
............................................................................................................................................................................................................................................................................GTATAT-----ATATTCTTGATCAGGA.............................................................................................22200.05100000000100000000
droSec2
GTCA-TAC--------------------------------------------------------------------CA--------------------AAGACACTA-GAATA--------------------------A------------TTATTATTATTATACCCGTTACTCGTA------CAG-TAAAAGGCTATACTAGATTCGTTGA-------AAAGTATGTGACA--GGCAGAAGGAAGCGTTTCC--GACCATATAAAGTGTAC-----ATATTCTTGATCAGGATCAATA---GCCGAGTCGATCTGACACTATCCGTCTGTCTGTCCGTC---CGTCTGTTTG----TATGACTGTCGA------GA--------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTGACA--GGC.....................................................................................................................................................2430.6721100
...............................................................................................................................................................................................................................................................................TAC-----ATATTCTTGATCAGGATCAATA---GC..................................................................................2720.5011000
............................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATA---GCCGAGTC............................................................................25200.1022000
...................................................................................................................................................................................................................................................................................................AGGATCAATA---GCCGAGTCGAT.........................................................................21200.0510100
.......................................................................................................................................................................................................................................................................................................TCAATA---GCCGAGTCGATCTGA.....................................................................21200.0510001
..........................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATA---GCCGAGTCGA..........................................................................29200.0511000
.........................................................................................................................................................................................................................................................................................................AATA---GCCGAGTCGATCTG......................................................................18200.0510010
droYak3
GGCC-TAATTATAAT---CG------GTCGGTGTTCT----------------------T-CTCAAC--TATAAATA--TTG--------------------------TAA----------------------TCATTAAGTAAAA--TAAAATTATATTTTTATACCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACA--GGCAGAAGGAAGCGTTTCC--GACCATATAAAGTATAT-----ATATTCTTGATCAGGATCAGTA---GCCGAGTCGATCTGGCCATGTCCGTCTGTCCGTCCGTC---TGTCCGTCCG----TATGAACGTCGA------GA--------TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................TACTCGTA------GAG-TAAAAGGGTATACT.........................................................................................................................................................................................25201.0020020000000000
..........................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAGTA---GCCGAGTC............................................................................27200.35707000000000
.......................................................................................................................................................................................................................................................................................................................CGATCTGGCCATGTCCGTCTG........................................................21200.25505000000000
...................................................................................................................................................................................................................TGA-------AAAGTATGTAACA--GGCAGA..................................................................................................................................................22200.15303000000000
...........................................................................................................................................................................................................................................................................................................TA---GCCGAGTCGATCTGGCCATGTCC.............................................................25200.10202000000000
...C-TAATTATAAT---CG------GTCGGTGT..................................................................................................................................................................................................................................................................................................................................................................21200.10200000020000
............AAT---CG------GTCGGTGTTCT----------------------T-CTCA...................................................................................................................................................................................................................................................................................................................................21200.05101000000000
.................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTGTCCGTCCGTC---TGT........................................24200.05100100000000
...........................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAGTA---GCCGAGTCGA..........................................................................28200.05100100000000
............................................................................................................................................................................................................................................................................................CTTGATCAGGATCAGTA---GCCG................................................................................21200.05110000000000
............................................................................................................................................................................ACTCGTA------GAG-TAAAAGGGTATACTAGATT....................................................................................................................................................................................29200.05101000000000
............................................................................................................................................................................................................................................................................................CTTGATCAGGATCAGTA---GCCGAGTCGATCT.......................................................................30200.05100000010000
.......................................................................................................................................................................................................................................................................................................................CGATCTGGCCATGTCCGTCTGTCCGT...................................................26200.05100100000000
.................................................................................................................................................................................................................GTTGA-------AAAGTATGTAACA--GGCAGAAGG...............................................................................................................................................27200.05100000010000
droEre2
AATTTCACTTTTAGT---AGAG------C----TGGG--A-----TGC---------------------CTAATAAAA--------------------ACTACATCA-AAATA--------------------------A-----T------CATAGTTCTTTATTCCCGTTACTCGTA------GAG-TAAAAGGGTATACTAGATTCGTTGA-------AAAGCGTGTAACA--GGCAGAAGGAAGCGTTTCC--GACCATATAAGGTATATATATTATATTCTTGACAAGGATCAATA---GCCGAGTCGGACTGGCCATGTCCGACTGTCCGTCCGTC---TGTCCA--------TA-GAACGCCTC------GA--------TSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................ATACTAGATTCGTTGA-------AAAGC..................................................................................................................................................................21100.1011000000
.......................................................................................................................................................................................................................................ACA--GGCAGAAGGAAGCGT.........................................................................................................................................18200.0510000010

Generated: 05/18/2015 at 01:48 AM