dmo_201

Name	Class	Family	Strand
(TTG)n	Simple_repeat	Simple_repeat	+

Name

Class

Family

Strand

(TTG)n

Simple_repeat

AAAGCTGGACAACAGCGGGCCCAAAAGCCAGCACACAGACAGCACAGCTGCAATTGAGCGCATTGTTGTTGATGTTGTGCTCGTGTTGTTGTTGTTGTTGTTGTGAGACTGATTTTAAATTTGATGAAAATTCCAGCAACA *********************************(((((((((((((.(((((((((((((.((((...)))).)))))))).))))).)))).))))))).)).*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	M046 female body	V049 head	V056 head	V041 embryo
.........................................................................GTTGTGCTCGTGTTGTTGATT...............................................	21	2	2	95.00	190	166	22	1	1	0
.........................................................................GTTGTGCTCGTGTTGTTGA.................................................	19	1	1	56.00	56	43	11	0	2	0
..................................................................GATTGTTGTTGTGCTCGTGTTGTT...................................................	24	3	5	51.80	259	205	51	1	2	0
......................................................................GTTGTTGTGCTCGTGTTGTT...................................................	20	1	3	51.33	154	115	31	0	8	0
.........................................................................GTTGTGCTCGTGTTGTTG..................................................	18	0	1	50.00	50	17	26	4	3	0
.........................................................................GTTGTGCTCGTGTTGTTGAT................................................	20	1	1	38.00	38	26	11	1	0	0
......................................................................GTTGTTGTGCTCGTGTTGTTG..................................................	21	1	3	35.00	105	63	33	5	4	0
......................................................................GTTGTTGTGCTCGTGTTGTTGATT...............................................	24	3	4	32.50	130	109	21	0	0	0
..................................................................GATTGTTGTTGTGCTCGTGTTGTTG..................................................	25	3	4	23.75	95	76	19	0	0	0
......................................................................GTTGTTGTGCTCGTGTTGT....................................................	19	1	4	22.50	90	72	14	2	2	0
........................................................................TGTTGTGCTCGTGTTGTTGATT...............................................	22	2	1	20.00	20	11	8	1	0	0
...................................................................ATTGTTGTTGTGCTCGTGTTGTT...................................................	23	2	3	19.33	58	37	20	1	0	0
..................................................................GATTGTTGTTGTGCTCGTGTTGT....................................................	23	3	8	18.75	150	130	16	1	3	0
......................................................................GTTGTTGTGCTCGTGTTGTTGAT................................................	23	2	2	18.50	37	32	5	0	0	0
.....................................................................TGTTGTTGTGCTCGTGTTGTT...................................................	21	1	2	16.00	32	14	17	0	1	0
........................................................................TGTTGTGCTCGTGTTGTTG..................................................	19	0	1	14.00	14	3	9	2	0	0
...................................................................ATTGTTGTTGTGCTCGTGTTGTTG..................................................	24	2	2	13.00	26	13	13	0	0	0
......................................................................GTTGTTGTGCTCGTGTTGTTGA.................................................	22	2	3	11.33	34	30	4	0	0	0
....................................................................TTGTTGTTGTGCTCGTGTTGTT...................................................	22	1	2	11.00	22	14	8	0	0	0
...................................................................ATTGTTGTTGTGCTCGTGTT......................................................	20	2	15	10.47	157	112	42	1	2	0
.........................................................................GTTGTGCTCGTGTTGTTGATTC..............................................	22	3	5	9.20	46	38	6	0	2	0
...................................................................ATTGTTGTTGTGCTCGTGTTG.....................................................	21	2	7	8.00	56	28	20	3	5	0
........................................................................TGTTGTGCTCGTGTTGTT...................................................	18	0	1	7.00	7	2	4	1	0	0
.....................................................................TGTTGTTGTGCTCGTGTTGTTG..................................................	22	1	2	7.00	14	7	7	0	0	0
...................................................................ATTGTTGTTGTGCTCGTGTTGT....................................................	22	2	4	6.50	26	14	12	0	0	0
...................................................................ATTGTTGTTGTGCTCGTGTTGTTGAT................................................	26	3	2	6.00	12	10	2	0	0	0
.....................................................................TGTTGTTGTGCTCGTGTTGTTGATT...............................................	25	3	3	5.33	16	12	4	0	0	0
....................................................................TTGTTGTTGTGCTCGTGTT......................................................	19	1	9	5.00	45	21	18	2	4	0
........................................................................TGTTGTGCTCGTGTTGTTGA.................................................	20	1	1	5.00	5	3	2	0	0	0
...................................................................ATTGTTGTTGTGCTCGTGTTGTTGA.................................................	25	3	2	5.00	10	8	2	0	0	0
....................................................................TTGTTGTTGTGCTCGTGTTGT....................................................	21	1	3	4.33	13	11	0	1	1	0
.....................................................................TGTTGTTGTGCTCGTGTTGT....................................................	20	1	3	3.67	11	2	9	0	0	0
....................................................................TTGTTGTTGTGCTCGTGTTGTTGATT...............................................	26	3	3	3.33	10	7	3	0	0	0
....................................................................TTGTTGTTGTGCTCGTGTTGTTG..................................................	23	1	2	2.50	5	3	2	0	0	0
...................................................................ATTGTTGTTGTGCTCGTGT.......................................................	19	2	20	2.35	47	23	23	0	1	0
.....................................................................TGTTGTTGTGCTCGTGTTGTTGAT................................................	24	2	2	2.00	4	2	1	1	0	0
.......................................................................TTGTTGTGCTCGTGTTGTTGA.................................................	21	2	4	1.75	7	6	1	0	0	0
..................................................................GATTGTTGTTGTGCTCGTGTTG.....................................................	22	3	16	1.69	27	17	9	0	1	0
....................................................................TTGTTGTTGTGCTCGTGTTGTTGAT................................................	25	2	2	1.50	3	3	0	0	0	0
....................................................................TTGTTGTTGTGCTCGTGTTGTTGA.................................................	24	2	2	1.50	3	2	1	0	0	0
.....................................................................TGTTGTTGTGCTCGTGTT......................................................	18	1	10	1.40	14	1	12	0	1	0
....................................................................TTGTTGTTGTGCTCGTGTTG.....................................................	20	1	5	1.40	7	3	2	2	0	0
.................................................................TGATTGTTGTTGTGCTCGTGTTGTTG..................................................	26	3	3	1.33	4	3	1	0	0	0
........................................................................TGTTGTGCTCGTGTTGTTGATTC..............................................	23	3	3	1.33	4	3	0	0	1	0
.......................................................................TTGTTGTGCTCGTGTTGTT...................................................	19	1	4	1.25	5	0	4	1	0	0
.......................................................................TTGTTGTGCTCGTGTTGTTGATT...............................................	23	3	8	1.13	9	5	4	0	0	0
..................................................................GATTGATGTTGTGCTCGTGTTGTTG..................................................	25	2	1	1.00	1	1	0	0	0	0
.........................................................................GTTGTGCTCGTGTTGTTGT.................................................	19	0	1	1.00	1	1	0	0	0	0
.........................................................................GTTGTGCTCGTGTTGTT...................................................	17	0	1	1.00	1	0	0	0	1	0
.....................................................................TGGTGTTGTGCTCGTGTTGTT...................................................	21	1	1	1.00	1	0	1	0	0	0
....................................................................TTGCTGTTGTGCTCGTGTTGTTGATT...............................................	26	3	1	1.00	1	1	0	0	0	0
........................................................................TGTTGTGCTCGTGTTGTTGCT................................................	21	1	1	1.00	1	0	0	1	0	0
........................................................................TGTTGTGCTCGTGTTGTTGAT................................................	21	1	1	1.00	1	1	0	0	0	0
.....................................................................TGTTGTTGTGCTCGTGTTGTTGA.................................................	23	2	2	1.00	2	1	1	0	0	0
.......................................................................TTGTTGTGCTCGTGTTGTTG..................................................	20	1	4	0.75	3	0	3	0	0	0
..............................................................................................................GATAGTAAATTTGAGGAAAATT.........	22	3	7	0.71	5	4	0	0	1	0
.................................................................TGATTGTTGTTGTGCTCGTGTTGT....................................................	24	3	3	0.67	2	1	1	0	0	0
.................................................................TGATTGTTGTTGTGCTCGTGTTGTT...................................................	25	3	3	0.67	2	2	0	0	0	0
.......................................................................TTGTTGTGCTCGTGTTGTTGAT................................................	22	2	3	0.67	2	2	0	0	0	0
.................................................................TGATTGTTGTTGTGCTCGTGTT......................................................	22	3	16	0.63	10	8	1	0	1	0
.....................................................................TGTTGTTGTGCTCGTGTTG.....................................................	19	1	5	0.60	3	0	3	0	0	0
......................................................................GTTGTTGTGCTCGTGTTG.....................................................	18	1	6	0.50	3	1	2	0	0	0
..........................................................................TTGTGCTCGTGTTGTTGA.................................................	18	1	2	0.50	1	0	1	0	0	0
........................................................................TGTTGTGCTCGTGTTTTTGA.................................................	20	2	2	0.50	1	0	1	0	0	0
........................................................................TGTTGTGCTCGTGTTGTTGAC................................................	21	2	2	0.50	1	1	0	0	0	0
..........................................................................TTGTGCTCGTGTTGTTGAT................................................	19	1	2	0.50	1	1	0	0	0	0
......................................................................GTTGTTGTGCTCGTGTTGTTGAA................................................	23	3	4	0.50	2	2	0	0	0	0
..................................................................GATTGCTGTTGTGCTCGTGTTGT....................................................	23	3	2	0.50	1	1	0	0	0	0
.........................................................................GTTGTGCTCGTGTTGTTGATTT..............................................	22	2	2	0.50	1	1	0	0	0	0
....................................................................TTGTTGTTGTGCTCGTGT.......................................................	18	1	11	0.45	5	0	4	1	0	0
......................................................................GTTGTTGTGCTCGTGTTTTTG..................................................	21	2	5	0.40	2	0	0	1	1	0
......................................................................GTTGTTGTGCTCGTGTTGTTGT.................................................	22	1	3	0.33	1	1	0	0	0	0
.......................................................................................................TGAGACTATTGTTAAATTTGAT................	22	3	3	0.33	1	0	0	0	0	1
...........................................................................TGTGCTCGTGTTGTTGAT................................................	18	1	4	0.25	1	0	1	0	0	0
.....................................................................TGTTGTTGTGCTCGTGTTGTTC..................................................	22	2	4	0.25	1	1	0	0	0	0
.........................................................................GTTGTGCTCGTCTTGTTGATT...............................................	21	3	5	0.20	1	0	1	0	0	0
......................................................................GTTGTTGTGCTCGTGTTGTTT..................................................	21	2	5	0.20	1	0	0	1	0	0
.............................................................................................................TGATAGTAAATTTGAGGAAAATT.........	23	3	5	0.20	1	0	1	0	0	0
.................................................................TGATTGTTGTTGTGCTCGTGT.......................................................	21	3	20	0.20	4	2	2	0	0	0
.................................................................TGATTGTTGTTGTGCTCGTGTTG.....................................................	23	3	5	0.20	1	1	0	0	0	0
.................................................................TTATTGTTGTTGTGCTCGTGTT......................................................	22	2	6	0.17	1	1	0	0	0	0
......................................................................GTTTTTGTGCTCGTGTTGTT...................................................	20	2	13	0.15	2	2	0	0	0	0
......................................................................GTTGTTGTGCTCGTATTGTTG..................................................	21	2	7	0.14	1	1	0	0	0	0
.........................................................................GTTGCGCTCGTGTTGTTGATT...............................................	21	3	14	0.14	2	2	0	0	0	0
.........................................................................GTTGTGCTAGTGTTGTTGAT................................................	20	2	7	0.14	1	1	0	0	0	0
......................................................................GTTGTTGTGCTCGTGTTTTTGAT................................................	23	3	8	0.13	1	1	0	0	0	0
..................................................................TATTGTTGTTGTGCTCGTGTT......................................................	21	2	9	0.11	1	0	1	0	0	0
.......................................................................TTGTTGTGCTCGTGTCGTT...................................................	19	2	9	0.11	1	0	1	0	0	0
.........................................................................GTTGTGCTCGTATTGTTGATT...............................................	21	3	9	0.11	1	0	1	0	0	0
......................................................................GTTGTTGCGCTCGTGTTGTTGA.................................................	22	3	10	0.10	1	1	0	0	0	0
......................................................................GTTGTTATGCTCGTGTTGT....................................................	19	2	11	0.09	1	1	0	0	0	0
..................................................................GGTTGTTGTTGTGCTCGTGT.......................................................	20	2	12	0.08	1	1	0	0	0	0
...................................................................ATTGGTGTTGGGCTCGTGTTG.....................................................	21	3	12	0.08	1	0	0	1	0	0
......................................................................GTTGTTGTGCTCGTGTTTTT...................................................	20	2	13	0.08	1	0	0	0	1	0
.................................................................ATGATGTTGTTGTGCTCGTGTT......................................................	22	3	14	0.07	1	1	0	0	0	0
.........................................................................GTTGAGCTCGTGTTGTTGGTT...............................................	21	3	15	0.07	1	0	0	0	1	0
......................................................................GTTGTTGTGCTCGTTTTGTT...................................................	20	2	18	0.06	1	0	1	0	0	0
.........................................................................GTTGTGTTCGTGTGGTGGTT................................................	20	3	20	0.05	1	1	0	0	0	0
...................................................................ATTGTTGTTGTGCCCGTGTTG.....................................................	21	3	20	0.05	1	0	0	1	0	0
......................................................................GTTGTTGTGCTCGTGTTTT....................................................	19	2	20	0.05	1	0	0	0	1	0
.........................................................................GTTGTGCTCGTGTTTTTGATT...............................................	21	3	20	0.05	1	1	0	0	0	0
.........................................................................GTTTTGCTCGGGTTGTTG..................................................	18	2	20	0.05	1	0	0	1	0	0

AAAGCTGGACAACAGCGGGCCCAAAAGCCAGCACACAGACAGCACAGCTGCAATTGAGCGCATTGTTGTTGATGTTGTGCTCGTGTTGTTGTTGTTGTTGTTGTGAGACTGATTTTAAATTTGATGAAAATTCCAGCAACA
***********************************(((((((((((((.(((((((((((((.((((...)))).)))))))).))))).)))).))))))).)).***********************************

Read size

# Mismatch

Hit Count

Total Norm

Total

V110
male body

M046
female body

V049
head

V056
head

V041
embryo

.........................................................................GTTGTGCTCGTGTTGTTGATT...............................................

95.00

190

166

.........................................................................GTTGTGCTCGTGTTGTTGA.................................................

56.00

..................................................................GATTGTTGTTGTGCTCGTGTTGTT...................................................

51.80

259

205

......................................................................GTTGTTGTGCTCGTGTTGTT...................................................

51.33

154

115

.........................................................................GTTGTGCTCGTGTTGTTG..................................................

50.00

.........................................................................GTTGTGCTCGTGTTGTTGAT................................................

38.00

......................................................................GTTGTTGTGCTCGTGTTGTTG..................................................

35.00

105

......................................................................GTTGTTGTGCTCGTGTTGTTGATT...............................................

32.50

130

109

..................................................................GATTGTTGTTGTGCTCGTGTTGTTG..................................................

23.75

......................................................................GTTGTTGTGCTCGTGTTGT....................................................

22.50

........................................................................TGTTGTGCTCGTGTTGTTGATT...............................................

20.00

...................................................................ATTGTTGTTGTGCTCGTGTTGTT...................................................

19.33

..................................................................GATTGTTGTTGTGCTCGTGTTGT....................................................

18.75

150

130

......................................................................GTTGTTGTGCTCGTGTTGTTGAT................................................

18.50

.....................................................................TGTTGTTGTGCTCGTGTTGTT...................................................

16.00

........................................................................TGTTGTGCTCGTGTTGTTG..................................................

14.00

...................................................................ATTGTTGTTGTGCTCGTGTTGTTG..................................................

13.00

......................................................................GTTGTTGTGCTCGTGTTGTTGA.................................................

11.33

....................................................................TTGTTGTTGTGCTCGTGTTGTT...................................................

11.00

...................................................................ATTGTTGTTGTGCTCGTGTT......................................................

10.47

157

112

.........................................................................GTTGTGCTCGTGTTGTTGATTC..............................................

9.20

...................................................................ATTGTTGTTGTGCTCGTGTTG.....................................................

8.00

........................................................................TGTTGTGCTCGTGTTGTT...................................................

7.00

.....................................................................TGTTGTTGTGCTCGTGTTGTTG..................................................

7.00

...................................................................ATTGTTGTTGTGCTCGTGTTGT....................................................

6.50

...................................................................ATTGTTGTTGTGCTCGTGTTGTTGAT................................................

6.00

.....................................................................TGTTGTTGTGCTCGTGTTGTTGATT...............................................

5.33

....................................................................TTGTTGTTGTGCTCGTGTT......................................................

5.00

........................................................................TGTTGTGCTCGTGTTGTTGA.................................................

5.00

...................................................................ATTGTTGTTGTGCTCGTGTTGTTGA.................................................

5.00

....................................................................TTGTTGTTGTGCTCGTGTTGT....................................................

4.33

.....................................................................TGTTGTTGTGCTCGTGTTGT....................................................

3.67

....................................................................TTGTTGTTGTGCTCGTGTTGTTGATT...............................................

3.33

....................................................................TTGTTGTTGTGCTCGTGTTGTTG..................................................

2.50

...................................................................ATTGTTGTTGTGCTCGTGT.......................................................

2.35

.....................................................................TGTTGTTGTGCTCGTGTTGTTGAT................................................

2.00

.......................................................................TTGTTGTGCTCGTGTTGTTGA.................................................

1.75

..................................................................GATTGTTGTTGTGCTCGTGTTG.....................................................

1.69

....................................................................TTGTTGTTGTGCTCGTGTTGTTGAT................................................

1.50

....................................................................TTGTTGTTGTGCTCGTGTTGTTGA.................................................

1.50

.....................................................................TGTTGTTGTGCTCGTGTT......................................................

1.40

....................................................................TTGTTGTTGTGCTCGTGTTG.....................................................

1.40

.................................................................TGATTGTTGTTGTGCTCGTGTTGTTG..................................................

1.33

........................................................................TGTTGTGCTCGTGTTGTTGATTC..............................................

1.33

.......................................................................TTGTTGTGCTCGTGTTGTT...................................................

1.25

.......................................................................TTGTTGTGCTCGTGTTGTTGATT...............................................

1.13

..................................................................GATTGATGTTGTGCTCGTGTTGTTG..................................................

1.00

.........................................................................GTTGTGCTCGTGTTGTTGT.................................................

1.00

.........................................................................GTTGTGCTCGTGTTGTT...................................................

1.00

.....................................................................TGGTGTTGTGCTCGTGTTGTT...................................................

1.00

....................................................................TTGCTGTTGTGCTCGTGTTGTTGATT...............................................

1.00

........................................................................TGTTGTGCTCGTGTTGTTGCT................................................

1.00

........................................................................TGTTGTGCTCGTGTTGTTGAT................................................

1.00

.....................................................................TGTTGTTGTGCTCGTGTTGTTGA.................................................

1.00

.......................................................................TTGTTGTGCTCGTGTTGTTG..................................................

0.75

..............................................................................................................GATAGTAAATTTGAGGAAAATT.........

0.71

.................................................................TGATTGTTGTTGTGCTCGTGTTGT....................................................

0.67

.................................................................TGATTGTTGTTGTGCTCGTGTTGTT...................................................

0.67

.......................................................................TTGTTGTGCTCGTGTTGTTGAT................................................

0.67

.................................................................TGATTGTTGTTGTGCTCGTGTT......................................................

0.63

.....................................................................TGTTGTTGTGCTCGTGTTG.....................................................

0.60

......................................................................GTTGTTGTGCTCGTGTTG.....................................................

0.50

..........................................................................TTGTGCTCGTGTTGTTGA.................................................

0.50

........................................................................TGTTGTGCTCGTGTTTTTGA.................................................

0.50

........................................................................TGTTGTGCTCGTGTTGTTGAC................................................

0.50

..........................................................................TTGTGCTCGTGTTGTTGAT................................................

0.50

......................................................................GTTGTTGTGCTCGTGTTGTTGAA................................................

0.50

..................................................................GATTGCTGTTGTGCTCGTGTTGT....................................................

0.50

.........................................................................GTTGTGCTCGTGTTGTTGATTT..............................................

0.50

....................................................................TTGTTGTTGTGCTCGTGT.......................................................

0.45

......................................................................GTTGTTGTGCTCGTGTTTTTG..................................................

0.40

......................................................................GTTGTTGTGCTCGTGTTGTTGT.................................................

0.33

.......................................................................................................TGAGACTATTGTTAAATTTGAT................

0.33

...........................................................................TGTGCTCGTGTTGTTGAT................................................

0.25

.....................................................................TGTTGTTGTGCTCGTGTTGTTC..................................................

0.25

.........................................................................GTTGTGCTCGTCTTGTTGATT...............................................

0.20

......................................................................GTTGTTGTGCTCGTGTTGTTT..................................................

0.20

.............................................................................................................TGATAGTAAATTTGAGGAAAATT.........

0.20

.................................................................TGATTGTTGTTGTGCTCGTGT.......................................................

0.20

.................................................................TGATTGTTGTTGTGCTCGTGTTG.....................................................

0.20

.................................................................TTATTGTTGTTGTGCTCGTGTT......................................................

0.17

......................................................................GTTTTTGTGCTCGTGTTGTT...................................................

0.15

......................................................................GTTGTTGTGCTCGTATTGTTG..................................................

0.14

.........................................................................GTTGCGCTCGTGTTGTTGATT...............................................

0.14

.........................................................................GTTGTGCTAGTGTTGTTGAT................................................

0.14

......................................................................GTTGTTGTGCTCGTGTTTTTGAT................................................

0.13

..................................................................TATTGTTGTTGTGCTCGTGTT......................................................

0.11

.......................................................................TTGTTGTGCTCGTGTCGTT...................................................

0.11

.........................................................................GTTGTGCTCGTATTGTTGATT...............................................

0.11

......................................................................GTTGTTGCGCTCGTGTTGTTGA.................................................

0.10

......................................................................GTTGTTATGCTCGTGTTGT....................................................

0.09

..................................................................GGTTGTTGTTGTGCTCGTGT.......................................................

0.08

...................................................................ATTGGTGTTGGGCTCGTGTTG.....................................................

0.08

......................................................................GTTGTTGTGCTCGTGTTTTT...................................................

0.08

.................................................................ATGATGTTGTTGTGCTCGTGTT......................................................

0.07

.........................................................................GTTGAGCTCGTGTTGTTGGTT...............................................

0.07

......................................................................GTTGTTGTGCTCGTTTTGTT...................................................

0.06

.........................................................................GTTGTGTTCGTGTGGTGGTT................................................

0.05

...................................................................ATTGTTGTTGTGCCCGTGTTG.....................................................

0.05

......................................................................GTTGTTGTGCTCGTGTTTT....................................................

0.05

.........................................................................GTTGTGCTCGTGTTTTTGATT...............................................

0.05

.........................................................................GTTTTGCTCGGGTTGTTG..................................................

0.05

TTTCGACCTGTTGTCGCCCGGGTTTTCGGTCGTGTGTCTGTCGTGTCGACGTTAACTCGCGTAACAACAACTACAACACGAGCACAACAACAACAACAACAACACTCTGACTAAAATTTAAACTACTTTTAAGGTCGTTGT *********************************(((((((((((((.(((((((((((((.((((...)))).)))))))).))))).)))).))))))).)).*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V110 male body	M046 female body	V056 head	V049 head
.........................................................................CAACACGAGCACAACAACTA................................................	20	1	1	154.00	154	75	73	3	3
.....................................................................ACAACAACACGAGCACAACAACTA................................................	24	2	2	65.00	130	86	41	2	1
......................................................................CAACAACACGAGCACAACAACTA................................................	23	2	2	39.00	78	39	39	0	0
...................................................................TAACAACAACACGAGCACAACAACTA................................................	26	3	2	39.00	78	50	27	1	0
........................................................................ACAACACGAGCACAACAACTA................................................	21	1	1	32.00	32	16	15	1	0
.....................................................................ACAACAACACGAGCACAACAAC..................................................	22	1	2	23.50	47	27	19	1	0
.....................................................................ACAACAACACGAGCACAACAA...................................................	21	1	2	18.00	36	32	4	0	0
...................................................................TAACAACAACACGAGCACAACAAC..................................................	24	2	2	17.00	34	23	10	0	1
.........................................................................CAACACGAGCACAACAACTAA...............................................	21	2	2	10.50	21	8	13	0	0
.........................................................................CAACACGAGCACAACAACTAAG..............................................	22	3	5	9.80	49	18	31	0	0
......................................................................CAACAACACGAGCACAACAAC..................................................	21	1	3	9.00	27	14	11	1	1
..........................................................................AACACGAGCACAACAACTA................................................	19	1	2	8.50	17	6	10	1	0
......................................................................CAACAACACGAGCACAACAA...................................................	20	1	3	8.00	24	14	10	0	0
...................................................................TAACAACAACACGAGCACAACAA...................................................	23	2	3	7.33	22	13	9	0	0
.......................................................................AACAACACGAGCACAACAACTA................................................	22	2	3	6.00	18	9	8	0	1
.....................................................................ACAACAACACGAGCACAACAACT.................................................	23	2	2	5.50	11	9	2	0	0
........................................................................ACAACACGAGCACAACAACT.................................................	20	1	1	5.00	5	1	4	0	0
.....................................................................ACAACAACACGAGCACAACAACTAA...............................................	25	3	3	5.00	15	7	8	0	0
......................................................................CAACAACACGAGCACAACAACTAA...............................................	24	3	4	4.75	19	7	10	1	1
.........................................................................CAACACGAGCACAACAACT.................................................	19	1	1	4.00	4	0	4	0	0
........................................................................ACAACACGAGCACAACAAC..................................................	19	0	1	4.00	4	1	3	0	0
...................................................................TAACAACAACACGAGCACAACA....................................................	22	2	4	3.75	15	9	5	0	1
.....................................................................ACAACAACACGAGCACAACA....................................................	20	1	3	3.67	11	4	6	1	0
....................................................................AACAACAACACGAGCACAACAACTA................................................	25	2	2	3.50	7	6	1	0	0
........................................................................ACAACACGAGCACAACAACTAAG..............................................	23	3	3	3.33	10	3	7	0	0
.........................................................................CAACACGAGCACAACAACTAG...............................................	21	2	1	3.00	3	3	0	0	0
......................................................................CAACAACACGAGCACAACAACT.................................................	22	2	3	3.00	9	1	8	0	0
....................................................................AACAACAACACGAGCACAACA....................................................	21	1	3	3.00	9	7	2	0	0
....................................................................AACAACAACACGAGCACAACAAC..................................................	23	1	2	3.00	6	3	3	0	0
..................................................................CTAACAACAACACGAGCACAACAAC..................................................	25	3	4	2.75	11	6	5	0	0
.............................................................................................................ACTATCATTTAAACTCCTTTTAA.........	23	3	5	2.60	13	0	13	0	0
.........................................................................CAACACGAGCACAACAAC..................................................	18	0	1	2.00	2	0	2	0	0
........................................................................ACAACACGAGCACAACAACTAA...............................................	22	2	1	2.00	2	1	1	0	0
......................................................................CAACAACACGAGCACAACA....................................................	19	1	4	2.00	8	0	6	1	1
...................................................................TAACAACAACACGAGCACAA......................................................	20	2	15	1.80	27	20	6	1	0
.......................................................................AACAACACGAGCACAACAACT.................................................	21	2	4	1.50	6	3	3	0	0
...................................................................TAACAACAACACGAGCACAAC.....................................................	21	2	7	1.43	10	6	4	0	0
.......................................................................CACAACACGAGCACAACAACT.................................................	21	2	1	1.00	1	0	1	0	0
.....................................................................ACTACAACACGAGCACAACAACTA................................................	24	1	1	1.00	1	0	0	1	0
...................................................................TAACAACAACACGAGCACAACAACT.................................................	25	3	2	1.00	2	1	1	0	0
........................................................................ACAACACGAGCACAACAA...................................................	18	0	1	1.00	1	0	1	0	0
..............................................................................................................CTATCATTTAAACTCCTTTTAA.........	22	3	7	0.86	6	0	6	0	0
.......................................................................AACAACACGAGCACAACAA...................................................	19	1	4	0.75	3	0	3	0	0
.......................................................................AACAACACGAGCACAACAAC..................................................	20	1	4	0.75	3	1	2	0	0
.................................................................ACTAACAACAACACGAGCACAACAA...................................................	25	3	3	0.67	2	1	1	0	0
.....................................................................ACAACAACACGAGCACAAC.....................................................	19	1	5	0.60	3	0	3	0	0
....................................................................AACAACAACACGAGCACAACAA...................................................	22	1	2	0.50	1	0	1	0	0
.....................................................................ACAACAACACGAGCACAACAACTAC...............................................	25	2	2	0.50	1	0	1	0	0
...........................................................................ACACGAGCACAACAACTA................................................	18	1	4	0.50	2	0	2	0	0
.........................................................................CAACACGAGCACAACAACTAAA..............................................	22	2	2	0.50	1	0	1	0	0
....................................................................AACAACAACACGAGCACAAC.....................................................	20	1	5	0.40	2	0	2	0	0
..................................................................CTAACAACAACACGAGCACAACAA...................................................	24	3	5	0.40	2	1	1	0	0
..................................................................CTAACAACAACACGAGCACAACA....................................................	23	3	8	0.38	3	1	2	0	0
..................................................................CTAACAACAACACGAGCACAAC.....................................................	22	3	16	0.38	6	3	3	0	0
.......................................................................AACAACACGAGCACAACAACTAA...............................................	23	3	8	0.38	3	2	1	0	0
.................................................................ACTAACAACAACACGAGCACAACA....................................................	24	3	3	0.33	1	1	0	0	0
......................................................................CAACAACACGAGCACAACAGCTA................................................	23	3	3	0.33	1	0	1	0	0
........TGTTGTCGACCGGGTTTTCGTT...............................................................................................................	22	2	3	0.33	1	0	0	1	0
.....................................................................ACAACAACACGAGCACAACAACTG................................................	24	3	3	0.33	1	1	0	0	0
.....................................................................ACAATAACACGAGCACAACAAC..................................................	22	2	4	0.25	1	0	1	0	0
............................................................................................................GACTATCATTTAAACTCCTTTT...........	22	3	4	0.25	1	0	1	0	0
...................................................................TAACAACAACACGAGCACAACAACC.................................................	25	3	4	0.25	1	0	1	0	0
......................................................................CTGCATCACGGGCACAACAA...................................................	20	3	4	0.25	1	1	0	0	0
.....................................................................ACAACAACACGAGCACAACAACTAT...............................................	25	3	4	0.25	1	0	1	0	0
....................................................................AACAACAACACGAGCACAA......................................................	19	1	9	0.22	2	0	2	0	0
.....................................................................ACAATAACACGAGCACAACAACTA................................................	24	3	5	0.20	1	1	0	0	0
.................................................................ACTAACAACAACACGAGCACAAC.....................................................	23	3	5	0.20	1	1	0	0	0
....................................................................CACAACAACACGAGCACAACA....................................................	21	2	6	0.17	1	1	0	0	0
.......................................................................AACAACACGAGCACAACA....................................................	18	1	6	0.17	1	0	1	0	0
..............................................................................CGAGCACAACAACAACAACAAC.........................................	22	0	6	0.17	1	1	0	0	0
...................................................................TAACAACAACACGAGCACA.......................................................	19	2	20	0.15	3	1	2	0	0
.................................................................ACTAACAACAACACGAGCACA.......................................................	21	3	20	0.15	3	2	1	0	0
.........................................................................CAACACGATCACAACAACTA................................................	20	2	7	0.14	1	1	0	0	0
......................................................................CAACAACACGGGCACAACAACTA................................................	23	3	7	0.14	1	1	0	0	0
.....................................................................ACAACAACACGAGCACAACGA...................................................	21	2	7	0.14	1	1	0	0	0
......................................................................CAACAACACTAGCACAACAAC..................................................	21	2	9	0.11	1	0	1	0	0
.....................................................................ACAACAACACGAGCACAA......................................................	18	1	10	0.10	1	1	0	0	0
.....................................................................ACAACAACACTAGCACAACAACTA................................................	24	3	12	0.08	1	1	0	0	0
.........................................................................CAACACGAGGACAACAACTA................................................	20	2	12	0.08	1	1	0	0	0
..........................................................................AAAACGAGCACACCAACAGCAACA...........................................	24	3	15	0.07	1	0	1	0	0
.................................................................ACTAACAACAACACGAGCACAA......................................................	22	3	16	0.06	1	1	0	0	0
.....................................................................ACAACAACACTAGCACAACAACT.................................................	23	3	18	0.06	1	0	0	1	0
................................................................CACTAACAACAACACGAGCAC........................................................	21	3	20	0.05	1	0	0	1	0

TTTCGACCTGTTGTCGCCCGGGTTTTCGGTCGTGTGTCTGTCGTGTCGACGTTAACTCGCGTAACAACAACTACAACACGAGCACAACAACAACAACAACAACACTCTGACTAAAATTTAAACTACTTTTAAGGTCGTTGT
***********************************(((((((((((((.(((((((((((((.((((...)))).)))))))).))))).)))).))))))).)).***********************************

Read size

# Mismatch

Hit Count

Total Norm

Total

V110
male body

M046
female body

V056
head

V049
head

.........................................................................CAACACGAGCACAACAACTA................................................

154.00

154

.....................................................................ACAACAACACGAGCACAACAACTA................................................

65.00

130

......................................................................CAACAACACGAGCACAACAACTA................................................

39.00

...................................................................TAACAACAACACGAGCACAACAACTA................................................

39.00

........................................................................ACAACACGAGCACAACAACTA................................................

32.00

.....................................................................ACAACAACACGAGCACAACAAC..................................................

23.50

.....................................................................ACAACAACACGAGCACAACAA...................................................

18.00

...................................................................TAACAACAACACGAGCACAACAAC..................................................

17.00

.........................................................................CAACACGAGCACAACAACTAA...............................................

10.50

.........................................................................CAACACGAGCACAACAACTAAG..............................................

9.80

......................................................................CAACAACACGAGCACAACAAC..................................................

9.00

..........................................................................AACACGAGCACAACAACTA................................................

8.50

......................................................................CAACAACACGAGCACAACAA...................................................

8.00

...................................................................TAACAACAACACGAGCACAACAA...................................................

7.33

.......................................................................AACAACACGAGCACAACAACTA................................................

6.00

.....................................................................ACAACAACACGAGCACAACAACT.................................................

5.50

........................................................................ACAACACGAGCACAACAACT.................................................

5.00

.....................................................................ACAACAACACGAGCACAACAACTAA...............................................

5.00

......................................................................CAACAACACGAGCACAACAACTAA...............................................

4.75

.........................................................................CAACACGAGCACAACAACT.................................................

4.00

........................................................................ACAACACGAGCACAACAAC..................................................

4.00

...................................................................TAACAACAACACGAGCACAACA....................................................

3.75

.....................................................................ACAACAACACGAGCACAACA....................................................

3.67

....................................................................AACAACAACACGAGCACAACAACTA................................................

3.50

........................................................................ACAACACGAGCACAACAACTAAG..............................................

3.33

.........................................................................CAACACGAGCACAACAACTAG...............................................

3.00

......................................................................CAACAACACGAGCACAACAACT.................................................

3.00

....................................................................AACAACAACACGAGCACAACA....................................................

3.00

....................................................................AACAACAACACGAGCACAACAAC..................................................

3.00

..................................................................CTAACAACAACACGAGCACAACAAC..................................................

2.75

.............................................................................................................ACTATCATTTAAACTCCTTTTAA.........

2.60

.........................................................................CAACACGAGCACAACAAC..................................................

2.00

........................................................................ACAACACGAGCACAACAACTAA...............................................

2.00

......................................................................CAACAACACGAGCACAACA....................................................

2.00

...................................................................TAACAACAACACGAGCACAA......................................................

1.80

.......................................................................AACAACACGAGCACAACAACT.................................................

1.50

...................................................................TAACAACAACACGAGCACAAC.....................................................

1.43

.......................................................................CACAACACGAGCACAACAACT.................................................

1.00

.....................................................................ACTACAACACGAGCACAACAACTA................................................

1.00

...................................................................TAACAACAACACGAGCACAACAACT.................................................

1.00

........................................................................ACAACACGAGCACAACAA...................................................

1.00

..............................................................................................................CTATCATTTAAACTCCTTTTAA.........

0.86

.......................................................................AACAACACGAGCACAACAA...................................................

0.75

.......................................................................AACAACACGAGCACAACAAC..................................................

0.75

.................................................................ACTAACAACAACACGAGCACAACAA...................................................

0.67

.....................................................................ACAACAACACGAGCACAAC.....................................................

0.60

....................................................................AACAACAACACGAGCACAACAA...................................................

0.50

.....................................................................ACAACAACACGAGCACAACAACTAC...............................................

0.50

...........................................................................ACACGAGCACAACAACTA................................................

0.50

.........................................................................CAACACGAGCACAACAACTAAA..............................................

0.50

....................................................................AACAACAACACGAGCACAAC.....................................................

0.40

..................................................................CTAACAACAACACGAGCACAACAA...................................................

0.40

..................................................................CTAACAACAACACGAGCACAACA....................................................

0.38

..................................................................CTAACAACAACACGAGCACAAC.....................................................

0.38

.......................................................................AACAACACGAGCACAACAACTAA...............................................

0.38

.................................................................ACTAACAACAACACGAGCACAACA....................................................

0.33

......................................................................CAACAACACGAGCACAACAGCTA................................................

0.33

........TGTTGTCGACCGGGTTTTCGTT...............................................................................................................

0.33

.....................................................................ACAACAACACGAGCACAACAACTG................................................

0.33

.....................................................................ACAATAACACGAGCACAACAAC..................................................

0.25

............................................................................................................GACTATCATTTAAACTCCTTTT...........

0.25

...................................................................TAACAACAACACGAGCACAACAACC.................................................

0.25

......................................................................CTGCATCACGGGCACAACAA...................................................

0.25

.....................................................................ACAACAACACGAGCACAACAACTAT...............................................

0.25

....................................................................AACAACAACACGAGCACAA......................................................

0.22

.....................................................................ACAATAACACGAGCACAACAACTA................................................

0.20

.................................................................ACTAACAACAACACGAGCACAAC.....................................................

0.20

....................................................................CACAACAACACGAGCACAACA....................................................

0.17

.......................................................................AACAACACGAGCACAACA....................................................

0.17

..............................................................................CGAGCACAACAACAACAACAAC.........................................

0.17

...................................................................TAACAACAACACGAGCACA.......................................................

0.15

.................................................................ACTAACAACAACACGAGCACA.......................................................

0.15

.........................................................................CAACACGATCACAACAACTA................................................

0.14

......................................................................CAACAACACGGGCACAACAACTA................................................

0.14

.....................................................................ACAACAACACGAGCACAACGA...................................................

0.14

......................................................................CAACAACACTAGCACAACAAC..................................................

0.11

.....................................................................ACAACAACACGAGCACAA......................................................

0.10

.....................................................................ACAACAACACTAGCACAACAACTA................................................

0.08

.........................................................................CAACACGAGGACAACAACTA................................................

0.08

..........................................................................AAAACGAGCACACCAACAGCAACA...........................................

0.07

.................................................................ACTAACAACAACACGAGCACAA......................................................

0.06

.....................................................................ACAACAACACTAGCACAACAACT.................................................

0.06

................................................................CACTAACAACAACACGAGCAC........................................................

0.05

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droMoj3	scaffold_6680:7322566-7322706 +	dmo_201	AAAGCTGG---ACAACA-GCGGGCCCAAAAGCCAGCA-CACAG-----------------------ACAGC-A---------CAGCTGCAATTGAGCGCATTGTTGTTGATGTTGTGCTCGTGTTGTTGTTGTTGTTGTTG--T---GAGAC---TGATTTTAAATTTGATGAA--AATTCCA--GCAACA
droVir3	scaffold_13049:19616254-19616390 +		AGAGT---ATGACAACA-GTTGCCCCAAAACCC--------------------------TGAACAGACAGG-C---------CGTCTGCAATTGTCTGTATTGTTT--GTTTTGGTGTTGCTGTTGTTTCTCTTGTTGTTG--A---GAGAC---TGATTTTAAATTTTATGAA--AATTCCT--ACAATA
droGri2	scaffold_15110:17737896-17738014 -		GTTGCAGCACCAAAGCA-GGT------------------------GCAGCACCAACAGCTAAGCCGACAGG---------GGCAGCTGTAATT-----------------------GTCTATACTGTTGGTATTGTTGCCA--------GTT---GGATTTTAAATTTTATGGA--AATTCCT--GCAGCA
droWil2	scf2_1100000004909:11554405-11554489 -		AAAATTAT---GCTTTTGAAATTCACAAAAACCAGCAACGGTGGCACCACGGCCACAGTTGTGCGCTCCGG-----------------------------------------------------AGTCGGCGTTGGAGTCG--------------------------------------------------
dp5	XR_group8:6651700-6651784 +		AATTC--------------------------------------------------------------------GCATCATCACCACCAT-GCC-----------------------A-CCGTACCTCTTCTTTTATTCCTA--------GAT---GGTTTATAAATTTGATGAA--AATGCATGGGAAATG
droPer2	scaffold_12:357428-357478 +		GT------------------------------------------------------------------------------------TGTCGTTGAGTGTATTGTTGAGTCTGTTGTACAT------TTGTTGTTGTTGTTG--------------------------------------------------
droFic1	scf7180000454073:1161276-1161351 +		CAAC----ATGACAGCA-ATT---------------------------------------ATGGTTGCTTTAGCCGATGTTGCTGTCGT-GTT-----------------------GTTGCTGCTGCTGCTGCTGCTGCTGATT-----------------------------------------------
droEle1	scf7180000491023:318897-318928 -		TGTGT---------------------------------------------------------------------------------------T-----------------------TTTCTTGTTGTTGTTGTTGTTGTTG--T-----------------------------------------------
droEug1	scf7180000409528:394220-394305 -		GAGCC--------------------------------------------------------------------CC----------TTGTCATT-----------------------GTTAGTGTTGGTGTTGTTGTTGTTG--TCAAGAGCTAGGCGATACTACATTTGCCCAAGTGCTTCCC--ACAGCG
droSim2	3r:16096801-16096825 +		TAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAAGCA--AATTTCC--ATAA-A
droYak3	3R:8962904-8962954 -		TGTTG--------------------------------------------------------------------TTGATGTTGCTACTGTTATT-----------------------GCTCTTGTTGTTGTTGTTGGTGCTG--T-----------------------------------------------
droEre2	scaffold_4770:16686610-16686660 +		TGTTG--------------------------------------------------------------------TTGATGTTGCTACTGTTATT-----------------------GCTCTTGTTGTTGTTGTTGTTGTTA--T-----------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droMoj3

AAAGCTGG---ACAACA-GCGGGCCCAAAAGCCAGCA-CACAG-----------------------ACAGC-A---------CAGCTGCAATTGAGCGCATTGTTGTTGATGTTGTGCTCGTGTTGTTGTTGTTGTTGTTG--T---GAGAC---TGATTTTAAATTTGATGAA--AATTCCA--GCAACA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................GTTGTGCTCGTGTTGTTGA.............................................................	19	1	56.00	56	11	0	0	2	0	43
...............................................................................................................GTTGTGCTCGTGTTGTTG..............................................................	18	1	50.00	50	26	0	4	3	0	17
..............................................................................................................TGTTGTGCTCGTGTTGTTG..............................................................	19	1	14.00	14	9	0	2	0	0	3
..............................................................................................................TGTTGTGCTCGTGTTGTT...............................................................	18	1	7.00	7	4	0	1	0	0	2
..............................................................................................................TGTTGTGCTCGTGTTGTTGA.............................................................	20	1	5.00	5	2	0	0	0	0	3
...............................................................................................................GTTGTGCTCGTGTTGTTGT.............................................................	19	1	1.00	1	0	0	0	0	0	1
...............................................................................................................GTTGTGCTCGTGTTGTT...............................................................	17	1	1.00	1	0	0	0	1	0	0
................................................................................................................TTGTGCTCGTGTTGTTGA.............................................................	18	2	0.50	1	1	0	0	0	0	0
..............................................................................................................TGTTGTGCTCGTGTTGTTGAC............................................................	21	2	0.50	1	0	0	0	0	0	1

droVir3

AGAGT---ATGACAACA-GTTGCCCCAAAACCC--------------------------TGAACAGACAGG-C---------CGTCTGCAATTGTCTGTATTGTTT--GTTTTGGTGTTGCTGTTGTTTCTCTTGTTGTTG--A---GAGAC---TGATTTTAAATTTTATGAA--AATTCCT--ACAATA

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droGri2

GTTGCAGCACCAAAGCA-GGT------------------------GCAGCACCAACAGCTAAGCCGACAGG---------GGCAGCTGTAATT-----------------------GTCTATACTGTTGGTATTGTTGCCA--------GTT---GGATTTTAAATTTTATGGA--AATTCCT--GCAGCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AAAATTAT---GCTTTTGAAATTCACAAAAACCAGCAACGGTGGCACCACGGCCACAGTTGTGCGCTCCGG-----------------------------------------------------AGTCGGCGTTGGAGTCG--------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................GCTCCGG-----------------------------------------------------AGTCGGCGTTGG.......................................................	19	1	1.00	1	0	0	1	0	0

dp5

AATTC--------------------------------------------------------------------GCATCATCACCACCAT-GCC-----------------------A-CCGTACCTCTTCTTTTATTCCTA--------GAT---GGTTTATAAATTTGATGAA--AATGCATGGGAAATG

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

GT------------------------------------------------------------------------------------TGTCGTTGAGTGTATTGTTGAGTCTGTTGTACAT------TTGTTGTTGTTGTTG--------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droFic1

CAAC----ATGACAGCA-ATT---------------------------------------ATGGTTGCTTTAGCCGATGTTGCTGTCGT-GTT-----------------------GTTGCTGCTGCTGCTGCTGCTGCTGATT-----------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGTGT---------------------------------------------------------------------------------------T-----------------------TTTCTTGTTGTTGTTGTTGTTGTTG--T-----------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GAGCC--------------------------------------------------------------------CC----------TTGTCATT-----------------------GTTAGTGTTGGTGTTGTTGTTGTTG--TCAAGAGCTAGGCGATACTACATTTGCCCAAGTGCTTCCC--ACAGCG	Size	Hit Count	Total Norm	Total
No Reads

droSim2

TAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAAGCA--AATTTCC--ATAA-A

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droYak3

TGTTG--------------------------------------------------------------------TTGATGTTGCTACTGTTATT-----------------------GCTCTTGTTGTTGTTGTTGGTGCTG--T-----------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................................TGTTATT-----------------------GCTCTTGTTGTTGTTGTTGG.......................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................TGATGTTGCTACTGTTATT-----------------------GCTCT......................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................T-----------------------GCTCTTGTTGTTGTTGTTGGTGC....................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TGTTG--------------------------------------------------------------------TTGATGTTGCTACTGTTATT-----------------------GCTCTTGTTGTTGTTGTTGTTGTTA--T-----------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dmo_201

scaffold_6680:7322616-7322656 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-28.1	-27.9	-27.9