ID:

dmo_20

 Coordinate:

scaffold_6500:16664728-16664789 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCATAAATACAAACATTCATAAATACTAAGTTTTGATGAAAATTCAGCACTTAAGTAGTTGATACAAAGGCGAATTTATTAAATTTATCGCATTGTGTGAGCTACTTAAATGACAGATTTTTATAGTACGACTAAAATAATAAGTGCACAAATTTACGAAAA

***********************************(((((((((...((.((((((((((.((((((..((((..............)))).)))))).)))))))))).))...)))))))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total M060

embryo

 V041

embryo

 M046

female body

 V110

male body
..................................................TTAAGTAGTTGATACAAAGGCGA......................................................................................... 23 0 1 181631.00 181631 177605 4018 5 3
..................................................TGAAGTAGTTGATACAAAGGCGA......................................................................................... 23 1 1 22977.00 22977 22976 1 0 0
.........................................................................................GCATTGTGTGAGCTACTTAAAT................................................... 22 0 1 3957.00 3957 1537 2420 0 0
..................................................TTATGTAGTTGATACAAAGGCGA......................................................................................... 23 1 1 3236.00 3236 3235 1 0 0
.................................................CTTAAGTAGTTGATACAAAGGCGA......................................................................................... 24 0 1 2674.00 2674 2652 22 0 0
..................................................TTAAGTAGTTGATACAAAGGCG.......................................................................................... 22 0 1 1512.00 1512 1451 61 0 0
..................................................TGATGTAGTTGATACAAAGGCGA......................................................................................... 23 2 1 1132.00 1132 1132 0 0 0
..................................................TTAAGGAGTTGATACAAAGGCGA......................................................................................... 23 1 1 953.00 953 923 30 0 0
...................................................TAAGTAGTTGATACAAAGGCGA......................................................................................... 22 0 1 767.00 767 763 4 0 0
..................................................GTAAGTAGTTGATACAAAGGCGA......................................................................................... 23 1 1 636.00 636 636 0 0 0
..................................................TTAAGTAGTTGATACAAAGGC........................................................................................... 21 0 1 634.00 634 556 78 0 0
..................................................TTAAGTAGTTGATACAAAGGAGA......................................................................................... 23 1 1 531.00 531 518 13 0 0
..................................................CTAAGTAGTTGATACAAAGGCGA......................................................................................... 23 1 1 530.00 530 523 7 0 0
..................................................TTAAGTAGCTGATACAAAGGCGA......................................................................................... 23 1 1 528.00 528 522 6 0 0
..................................................TTAAGTAGTTGATACAAAGGCGAT........................................................................................ 24 1 1 493.00 493 478 15 0 0
.........................................................................................GCATTGTGTGAGCTACTTAAATC.................................................. 23 1 1 449.00 449 372 77 0 0
..................................................TTAAGTAGTTGATAAAAAGGCGA......................................................................................... 23 1 1 425.00 425 423 2 0 0
.................................................CGTAAGTAGTTGATACAAAGGCGA......................................................................................... 24 1 1 416.00 416 416 0 0 0
..................................................TTAAGTATTTGATACAAAGGCGA......................................................................................... 23 1 1 412.00 412 411 1 0 0
..................................................CTAAGTAGTTGATACAAGGGCGA......................................................................................... 23 2 1 393.00 393 384 9 0 0
..................................................ATAAGTAGTTGATACAAAGGCGA......................................................................................... 23 1 1 358.00 358 356 2 0 0
..................................................TTAAGTAGTTGATACAAAGGCGG......................................................................................... 23 1 1 344.00 344 327 17 0 0
..................................................TTAAGTAGTTGATACAAAGGGGA......................................................................................... 23 1 1 326.00 326 323 3 0 0
..................................................TCAAGTAGTTGATACAAAGGCGA......................................................................................... 23 1 1 258.00 258 257 1 0 0
..................................................TTAAGTAGTTGATACAAATGCGA......................................................................................... 23 1 1 257.00 257 253 4 0 0
..................................................TTAAGTAGTTGATACAAAGGCAA......................................................................................... 23 1 1 253.00 253 250 3 0 0
..................................................TAAAGTAGTTGATACAAAGGCGA......................................................................................... 23 1 1 245.00 245 244 1 0 0
....................................................AAGTAGTTGATACAAAGGCGA......................................................................................... 21 0 1 243.00 243 240 3 0 0
..................................................TTAAGTAGTTAATACAAAGGCGA......................................................................................... 23 1 1 237.00 237 233 4 0 0
.................................................CTTAAGTAGTTGATACAAAGGC........................................................................................... 22 0 1 236.00 236 219 17 0 0
.........................................................................................GCATTGTGTGAGCTACTTAAA.................................................... 21 0 1 235.00 235 79 156 0 0
..................................................TTAAGTAGTTGATACAAAGGCGAA........................................................................................ 24 0 1 210.00 210 200 10 0 0
..................................................TGAAGTAGTTGATACAAAGGCG.......................................................................................... 22 1 1 209.00 209 209 0 0 0
..................................................TTAAGTAGTTGATACAAAGG............................................................................................ 20 0 1 207.00 207 204 3 0 0
..................................................TTAAGTAGTTGATACAAAGGCGAC........................................................................................ 24 1 1 205.00 205 202 3 0 0
..................................................TTAAGTAGTTGATACAAAGGCGT......................................................................................... 23 1 1 196.00 196 187 9 0 0
.........................................................................................GCATTGTGTGAGCTACTTAAAC................................................... 22 1 1 190.00 190 142 48 0 0
.................................................CTTAAGTAGTTGATACAAAGGCG.......................................................................................... 23 0 1 174.00 174 166 8 0 0
.........................................................................................GCATTGTGTGAGCTACTTAAATT.................................................. 23 1 1 167.00 167 97 70 0 0
..................................................TTAAGTAGTTGATACTAAGGCGA......................................................................................... 23 1 1 154.00 154 153 1 0 0
..................................................TTAAGTAGTTGATACAAAGTCGA......................................................................................... 23 1 1 146.00 146 145 1 0 0
..................................................TTAAGCAGTTGATACAAAGGCGA......................................................................................... 23 1 1 143.00 143 129 14 0 0
..................................................TTAAGTAGTTTATACAAAGGCGA......................................................................................... 23 1 1 135.00 135 133 2 0 0
..................................................TTAAGTAGTCGATACAAAGGCGA......................................................................................... 23 1 1 126.00 126 124 2 0 0
..........................................................................................CATTGTGTGAGCTACTTAAAT................................................... 21 0 1 120.00 120 32 88 0 0
..................................................TTAATTAGTTGATACAAAGGCGA......................................................................................... 23 1 1 118.00 118 118 0 0 0
..................................................TTAAGTGGTTGATACAAAGGCGA......................................................................................... 23 1 1 113.00 113 106 7 0 0
..................................................TTAAGTAGTTCATACAAAGGCGA......................................................................................... 23 1 1 112.00 112 109 3 0 0
..................................................TTAAGTAGTTGATACAAGGGCGA......................................................................................... 23 1 1 112.00 112 110 2 0 0
..................................................TTAAGTAGTTGGTACAAAGGCGA......................................................................................... 23 1 1 104.00 104 94 10 0 0
..................................................TTCAGTAGTTGATACAAAGGCGA......................................................................................... 23 1 1 100.00 100 99 1 0 0
..........................................................................................CATTGTGTGAGCTACTTAAATG.................................................. 22 0 1 99.00 99 28 71 0 0
..................................................TGAAGTAGTTGATAAAAAGGCGA......................................................................................... 23 2 1 94.00 94 93 1 0 0
..................................................TTAGGTAGTTGATACAAAGGCGA......................................................................................... 23 1 1 91.00 91 85 6 0 0
..................................................TTAAGTAGTTGATACAAAGGCGC......................................................................................... 23 1 1 88.00 88 72 16 0 0
..................................................TTAAGTAGTTGATACAATGGCGA......................................................................................... 23 1 1 87.00 87 87 0 0 0
..................................................TTAAGTAGTTGCTACAAAGGCGA......................................................................................... 23 1 1 83.00 83 78 5 0 0
..................................................TTAAGTACTTGATACAAAGGCGA......................................................................................... 23 1 1 81.00 81 80 1 0 0
..................................................TTAAGTAGTTGACACAAAGGCGA......................................................................................... 23 1 1 78.00 78 77 1 0 0
..................................................TTAAGAAGTTGATACAAAGGCGA......................................................................................... 23 1 1 76.00 76 75 1 0 0
..................................................TGAAGTAGTTGATACAAAGGAGA......................................................................................... 23 2 1 76.00 76 76 0 0 0
.................................................CTCAAGTAGTTGATACAAAGGCGA......................................................................................... 24 1 1 76.00 76 76 0 0 0
..................................................TTAAGTAGTTGATACAGAGGCGA......................................................................................... 23 1 1 75.00 75 71 4 0 0
..................................................TTAAGTAGTTGATGCAAAGGCGA......................................................................................... 23 1 1 74.00 74 69 5 0 0
..................................................TTAAGTAGTTGATACAAAAGCGA......................................................................................... 23 1 1 74.00 74 65 9 0 0
..................................................TTAAGTAGTTGATATAAAGGCGA......................................................................................... 23 1 1 72.00 72 65 7 0 0
..........................................................................................CATTGTGTGAGCTACTTAAATC.................................................. 22 1 1 71.00 71 51 20 0 0
..................................................TGAAGTAGTTGATACAAAGGCGAT........................................................................................ 24 2 1 71.00 71 71 0 0 0
..................................................CGAAGTAGTTGATACAAGGGCGA......................................................................................... 23 3 1 70.00 70 70 0 0 0
................................................TCTTAAGTAGTTGATACAAAGGCGA......................................................................................... 25 1 1 69.00 69 69 0 0 0
..................................................TGAAGTAGTTGATACAAAGGC........................................................................................... 21 1 1 69.00 69 69 0 0 0
..................................................TTAAGTAGTTGATACAAAGGTGA......................................................................................... 23 1 1 66.00 66 62 4 0 0
..................................................TTAAGTAATTGATACAAAGGCGA......................................................................................... 23 1 1 65.00 65 62 3 0 0
.........................................................................................GGATTGTGTGAGCTACTTAAAT................................................... 22 1 2 64.50 129 128 1 0 0
..................................................TTAAGTAGTTGATACGAAGGCGA......................................................................................... 23 1 1 63.00 63 61 2 0 0
..................................................TTAAGTAGTTGAAACAAAGGCGA......................................................................................... 23 1 1 58.00 58 58 0 0 0
..................................................TGAAGGAGTTGATACAAAGGCGA......................................................................................... 23 2 1 54.00 54 54 0 0 0
..................................................TTAAGTAGTTGATACAAAGGCCA......................................................................................... 23 1 1 53.00 53 51 2 0 0
..................................................TTAAGTAGTTGATACAAAGGCGTC........................................................................................ 24 2 1 53.00 53 51 2 0 0
..................................................TGAAGTATTTGATACAAAGGCGA......................................................................................... 23 2 1 53.00 53 53 0 0 0
..............................................GATCTTAAGTAGTTGATACAAAGGCGA......................................................................................... 27 2 1 51.00 51 51 0 0 0
..................................................TTAAGTAGATGATACAAAGGCGA......................................................................................... 23 1 1 49.00 49 46 3 0 0
.................................................CTTAAGTAGTTGATACAAAGGAGA......................................................................................... 24 1 1 47.00 47 47 0 0 0
.......................................................TAGTTGATACAAAGGCGA......................................................................................... 18 0 1 46.00 46 46 0 0 0
..................................................TTGAGTAGTTGATACAAAGGCGA......................................................................................... 23 1 1 46.00 46 41 5 0 0
..........................................................................................CATTGTGTGAGCTACTTAAATT.................................................. 22 1 1 42.00 42 19 23 0 0
..................................................TTAAGTAGTGGATACAAAGGCGA......................................................................................... 23 1 1 41.00 41 41 0 0 0
..................................................TGAAGTAGTTGATACAAAGGGGA......................................................................................... 23 2 1 38.00 38 38 0 0 0
..................................................TTAAGTAGTTGATACAAAGGCTA......................................................................................... 23 1 1 36.00 36 31 5 0 0
..................................................TGAAGTAGTTGATACAAAGGCAA......................................................................................... 23 2 1 36.00 36 36 0 0 0
..................................................TGAAGTACTTGATACAAAGGCGA......................................................................................... 23 2 1 35.00 35 35 0 0 0
.................................................CGTAAGTAGTTGATACAAAGGC........................................................................................... 22 1 1 35.00 35 35 0 0 0
..................................................TTAAGTAGGTGATACAAAGGCGA......................................................................................... 23 1 1 35.00 35 33 2 0 0
.........................................................................................GCATTGTGTGACCTACTTAAAT................................................... 22 1 1 33.00 33 28 5 0 0
..................................................CGAAGTAGTTGATACAAAGGCGA......................................................................................... 23 2 1 32.00 32 32 0 0 0
..................................................TTAAGTAGTAGATACAAAGGCGA......................................................................................... 23 1 1 32.00 32 31 1 0 0
..................................................TTAAGTAGTTGATACAAAGACGA......................................................................................... 23 1 1 31.00 31 28 3 0 0
..................................................TTAAGTAGTTGATACAAAGGCGTT........................................................................................ 24 2 1 30.00 30 29 1 0 0
.................................................CGTTAGTAGTTGATACAAAGGCGA......................................................................................... 24 2 1 30.00 30 30 0 0 0
.................................................CTTTAGTAGTTGATACAAAGGCGA......................................................................................... 24 1 1 29.00 29 29 0 0 0
..................................................TGCAGTAGTTGATACAAAGGCGA......................................................................................... 23 2 1 28.00 28 28 0 0 0
..................................................TGAAGTAGTTGATACAAAGGCGAC........................................................................................ 24 2 1 27.00 27 27 0 0 0
..................................................TGAAGTAGTTGATACTAAGGCGA......................................................................................... 23 2 1 26.00 26 26 0 0 0
..................................................TTAAGTAGTTGATACAAAGGCGATT....................................................................................... 25 1 1 26.00 26 26 0 0 0
..................................................TGAAGTAGTTGATACAAAGGCGG......................................................................................... 23 2 1 26.00 26 26 0 0 0
..................................................TGAAGTAGTTGATACAAAGTCGA......................................................................................... 23 2 1 25.00 25 25 0 0 0
..................................................TGAAGTAGTTGATACAAAGG............................................................................................ 20 1 1 25.00 25 25 0 0 0
..................................................TTAAGTAGTTGATACAAAGGCA.......................................................................................... 22 1 1 24.00 24 24 0 0 0
..................................................TTAACTAGTTGATACAAAGGCGA......................................................................................... 23 1 1 24.00 24 24 0 0 0
..................................................TGAAGTAGTTAATACAAAGGCGA......................................................................................... 23 2 1 24.00 24 24 0 0 0
..................................................TTAAATAGTTGATACAAAGGCGA......................................................................................... 23 1 1 24.00 24 21 3 0 0
..................................................TTATGTAGTTGATACAAAGGCG.......................................................................................... 22 1 1 24.00 24 24 0 0 0
...............................................ATCTTAAGTAGTTGATACAAAGGCGA......................................................................................... 26 2 1 24.00 24 24 0 0 0
.................................................CGTAAGTAGTTGATACAAAGGCG.......................................................................................... 23 1 1 23.00 23 23 0 0 0
..................................................TTAAGTAGTTGATACAAAGGCGATC....................................................................................... 25 2 1 23.00 23 23 0 0 0
..................................................TGAAGTAGCTGATACAAAGGCGA......................................................................................... 23 2 2 23.00 46 46 0 0 0
..................................................TTAAGTAGTTGATACAAACGCGA......................................................................................... 23 1 1 23.00 23 22 1 0 0
..................................................TGAAGTAGTTGATACAAAGGCGAA........................................................................................ 24 1 1 23.00 23 23 0 0 0
.....................................................AGTAGTTGATACAAAGGCGA......................................................................................... 20 0 1 23.00 23 23 0 0 0
..................................................TGAAGTAGTTGATACAAATGCGA......................................................................................... 23 2 1 22.00 22 22 0 0 0
.........................................................................................GCAGTGTGTGAGCTACTTAAAT................................................... 22 1 1 22.00 22 22 0 0 0
..................................................TTAAGTAGTTGATACACAGGCGA......................................................................................... 23 1 1 22.00 22 4 18 0 0
..................................................AGAAGTAGTTGATACAAAGGCGA......................................................................................... 23 2 1 20.00 20 20 0 0 0
..................................................TTAAGTAGTTGATTCAAAGGCGA......................................................................................... 23 1 1 20.00 20 16 4 0 0
..................................................TGAAGTAGTTGATACAAAGGCGT......................................................................................... 23 2 1 20.00 20 18 2 0 0
.........................................................................................GCATTGTGTGAGCTACTTACAT................................................... 22 1 1 19.00 19 0 19 0 0
..................................................TTAAGTAGTTGATACCAAGGCGA......................................................................................... 23 1 1 19.00 19 2 17 0 0
..................................................TTAAGTAACTGATACAAAGGCGA......................................................................................... 23 2 1 18.00 18 18 0 0 0
..................................................TTAAGTAGTTGATACAAAGGCGAAA....................................................................................... 25 1 1 17.00 17 17 0 0 0
......................................................GTAGTTGATACAAAGGCGA......................................................................................... 19 0 1 17.00 17 16 1 0 0
.........................................................................................GCATTGTGTGCGCTACTTAAAT................................................... 22 1 1 17.00 17 10 7 0 0
..................................................TTAAGTAGTTGATAAAAAGTCGA......................................................................................... 23 2 1 17.00 17 17 0 0 0
..................................................TTATGTAGCTGATACAAAGGCGA......................................................................................... 23 2 1 17.00 17 17 0 0 0
..................................................GGAAGTAGTTGATACAAAGGCGA......................................................................................... 23 2 1 16.00 16 16 0 0 0
.........................................................................................GCACTGTGTGAGCTACTTAAAT................................................... 22 1 1 16.00 16 15 1 0 0
.........................................................................................GTATTGTGTGAGCTACTTAAAT................................................... 22 1 1 16.00 16 13 3 0 0
...................................................TGAGTAGTTGATACAAAGGCGA......................................................................................... 22 1 1 16.00 16 16 0 0 0
.................................................CTTAAGTCGTTGATACAAAGGCGA......................................................................................... 24 1 1 15.00 15 15 0 0 0
..................................................TTAAGTAGTTGATACAACGGCGA......................................................................................... 23 1 1 15.00 15 12 3 0 0
..................................................TTAAGTAGTTGATAGAAAGGCGA......................................................................................... 23 1 1 15.00 15 12 3 0 0
..................................................TTAAGGAGTTGATACAAAGGCG.......................................................................................... 22 1 1 15.00 15 13 2 0 0
..................................................TGAAGTAGTTGATACAATGGCGA......................................................................................... 23 2 1 15.00 15 15 0 0 0
..................................................TGAAGTAGTTTATACAAAGGCGA......................................................................................... 23 2 1 15.00 15 15 0 0 0
..................................................TGAAGTAGTTCATACAAAGGCGA......................................................................................... 23 2 1 15.00 15 15 0 0 0
..................................................TGAAGTGGTTGATACAAAGGCGA......................................................................................... 23 2 1 15.00 15 15 0 0 0
..................................................TTAAGTAGTTGATACAAAGCCGA......................................................................................... 23 1 1 15.00 15 14 1 0 0
.........................................................................................GAATTGTGTGAGCTACTTAAAT................................................... 22 1 1 15.00 15 0 15 0 0
.........................................................................................GGATTGTGTGAGCTACTTAAATC.................................................. 23 2 2 14.50 29 29 0 0 0
.................................................CTTAAGTAGTTGATACAAAGGCGAT........................................................................................ 25 1 1 13.00 13 13 0 0 0
.................................................CTTAATTAGTTGATACAAAGGCGA......................................................................................... 24 1 1 13.00 13 13 0 0 0
...........................................................................................ATTGTGTGAGCTACTTAAAT................................................... 20 0 1 13.00 13 10 3 0 0
..........................................................................................CATTGTGTGAGCTACTTAAA.................................................... 20 0 1 13.00 13 3 10 0 0
..................................................TTAAGTAGTTGATACAAAGGCC.......................................................................................... 22 1 1 13.00 13 13 0 0 0
..................................................TGAATTAGTTGATACAAAGGCGA......................................................................................... 23 2 1 13.00 13 13 0 0 0
.........................................................................................GCATTGTGTGAGCTACTTAAACC.................................................. 23 2 1 12.00 12 12 0 0 0
..................................................TTATGTAGTTGATACAAATGCGA......................................................................................... 23 2 1 12.00 12 12 0 0 0
..................................................TTAAGTAGTTGATACATAGGCGA......................................................................................... 23 1 1 12.00 12 7 5 0 0
..................................................TGAAGTAGTTGATACAAGGGCGA......................................................................................... 23 2 1 12.00 12 12 0 0 0
..................................................TGAAGTAGTCGATACAAAGGCGA......................................................................................... 23 2 1 12.00 12 12 0 0 0
.................................................CGCAAGTAGTTGATACAAAGGCGA......................................................................................... 24 2 1 12.00 12 12 0 0 0
......................................................GGAGTTGATACAAAGGCGA......................................................................................... 19 1 1 12.00 12 12 0 0 0
..................................................TTAAGGAGTTGATAAAAAGGCGA......................................................................................... 23 2 1 12.00 12 11 1 0 0
.................................................TTTAAGTAGTTGATACAAAGGCGA......................................................................................... 24 1 1 12.00 12 12 0 0 0
..................................................TTAAGTTGTTGATACAAAGGCGA......................................................................................... 23 1 1 12.00 12 12 0 0 0
.........................................................................................GCATTGTGTGAGATACTTAAAT................................................... 22 1 1 12.00 12 3 9 0 0
..................................................TTATGTAGTTGATACAAAGGC........................................................................................... 21 1 1 11.00 11 11 0 0 0
.........................................................................................GCATTGTGTGAGCTACTTCAAT................................................... 22 1 1 11.00 11 0 11 0 0
..................................................TTAAGTAGTTGTTACAAAGGCGA......................................................................................... 23 1 1 11.00 11 8 3 0 0
..................................................TGAAGTAGTTGATAAAAAGGGGA......................................................................................... 23 3 1 11.00 11 11 0 0 0
..................................................TGAAGTAGTGGATACAAAGGCGA......................................................................................... 23 2 1 11.00 11 11 0 0 0
..................................................TGAAGTAGGTGATACAAAGGCGA......................................................................................... 23 2 1 11.00 11 10 1 0 0
.........................................................................................TCATTGTGTGAGCTACTTAAAT................................................... 22 1 1 11.00 11 10 1 0 0
.........................................................................................GCATTGTGTGAGCTACTTAAATTC................................................. 24 2 1 10.00 10 8 2 0 0
.........................................................................................GCATTGTGTGAGCTGCTTAAAT................................................... 22 1 1 10.00 10 3 7 0 0
..................................................TGATGTAGTTGATACAAAGGCG.......................................................................................... 22 2 1 10.00 10 10 0 0 0
..................................................TTAAGTGTTTGATACAAAGGCGA......................................................................................... 23 2 1 10.00 10 10 0 0 0
.........................................................................................GCAATGTGTGAGCTACTTAAAT................................................... 22 1 1 10.00 10 10 0 0 0
.........................................................................................GCATTGGGTGAGCTACTTAAAT................................................... 22 1 1 10.00 10 4 6 0 0
.........................................................................................GCATTGTGTGAGCTACTTAACT................................................... 22 1 1 10.00 10 0 10 0 0
.........................................................................................GCATTGTGTGAGCTACTTAAATCC................................................. 24 2 1 9.00 9 9 0 0 0
.................................................CTTAAGTAGTTGCTACAAAGGCGA......................................................................................... 24 1 1 9.00 9 9 0 0 0
..........................................................................................CATTGTGTGAGCTACTTAAATA.................................................. 22 1 1 9.00 9 3 6 0 0
..................................................TGAAGTAGATGATACAAAGGCGA......................................................................................... 23 2 1 9.00 9 9 0 0 0
..................................................TGAAGTAGTTGACACAAAGGCGA......................................................................................... 23 2 1 9.00 9 9 0 0 0
..................................................CTATGTAGTTGATACAAGGGCGA......................................................................................... 23 3 1 9.00 9 9 0 0 0
..................................................TGAAGTAGTTGATACAAAGGCGTC........................................................................................ 24 3 1 9.00 9 9 0 0 0
..................................................TGAGGTAGTTGATACAAAGGCGA......................................................................................... 23 2 1 9.00 9 9 0 0 0
.........................................................................................GCATTGTGTGAGCTACTTAA..................................................... 20 0 1 9.00 9 4 5 0 0
..................................................TGAAGTAGTTGATTCAAAGGCGA......................................................................................... 23 2 1 8.00 8 8 0 0 0
..................................................TGAAGAAGTTGATACAAAGGCGA......................................................................................... 23 2 1 8.00 8 8 0 0 0
..................................................TGAAGTAGTTGATGCAAAGGCGA......................................................................................... 23 2 1 8.00 8 8 0 0 0
..................................................TGAAGTAGTTGATACAAAGGCGC......................................................................................... 23 2 1 8.00 8 8 0 0 0
.........................................................................................GCAGTGTGTGAGCTACTTAAATC.................................................. 23 2 1 8.00 8 8 0 0 0
.....................................................ATTAGTTGATACAAAGGCGA......................................................................................... 20 1 1 8.00 8 8 0 0 0
.........................................................................................GCATTTTGTGAGCTACTTAAAT................................................... 22 1 1 8.00 8 7 1 0 0
.................................................ATTAAGTAGTTGATACAAAGGCGA......................................................................................... 24 1 1 8.00 8 8 0 0 0
.................................................CTTAAGTAGTTGATACAAAGGCGT......................................................................................... 24 1 1 8.00 8 8 0 0 0
.................................................CTTAAGTAGTTGATACAAAGGCGC......................................................................................... 24 1 1 8.00 8 8 0 0 0
..................................................TGAAGTAGTTGCTACAAAGGCGA......................................................................................... 23 2 1 8.00 8 8 0 0 0
..................................................TTATGTAGTTGATACAAAGGAGA......................................................................................... 23 2 1 8.00 8 8 0 0 0
....................................................AGGTAGTTGATACAAAGGCGA......................................................................................... 21 1 1 8.00 8 8 0 0 0
..................................................TTTAGTAGTTGATACAAAGGCGA......................................................................................... 23 1 1 7.00 7 7 0 0 0
.........................................................................................GCATTGTGTGGGCTACTTAAAT................................................... 22 1 1 7.00 7 2 5 0 0
..................................................TTAAGTACCTGATACAAAGGCGA......................................................................................... 23 2 1 7.00 7 7 0 0 0
..................................................TTAAGTCGTTGATACAAAGGCGA......................................................................................... 23 1 1 7.00 7 3 4 0 0
...................................................TTAGTAGTTGATACAAAGGCGA......................................................................................... 22 1 1 7.00 7 7 0 0 0
.........................................................................................ACATTGTGTGAGCTACTTAAAT................................................... 22 1 1 7.00 7 3 4 0 0
..................................................TTAAGTAGTTGATACAAAGGCGAAC....................................................................................... 25 1 1 7.00 7 7 0 0 0
.................................................CTTAAGTAGTTGATACAAAGGCGG......................................................................................... 24 1 1 7.00 7 7 0 0 0
..................................................TTAAGTAGTTGAGACAAAGGCGA......................................................................................... 23 1 1 7.00 7 5 2 0 0
.........................................................................................GCATTGTGTGAGCTAATTAAAT................................................... 22 1 1 7.00 7 0 7 0 0
.................................................CTTAAGTAGTTGATACAAAGG............................................................................................ 21 0 1 7.00 7 6 1 0 0
..................................................TGAAGTAGTTGGTACAAAGGCGA......................................................................................... 23 2 1 7.00 7 7 0 0 0
.........................................................................................GCATTGTGTGAGCTCCTTAAAT................................................... 22 1 1 7.00 7 1 6 0 0
..................................................TGAAGTAATTGATACAAAGGCGA......................................................................................... 23 2 1 7.00 7 7 0 0 0
.............................................CGATCTTAAGTAGTTGATACAAAGGCGA......................................................................................... 28 3 1 7.00 7 7 0 0 0
.................................................CGTAAGTAGTTGATACAAAGGAGA......................................................................................... 24 2 1 7.00 7 7 0 0 0
.........................................................................................GCATTGTTTGAGCTACTTAAAT................................................... 22 1 1 7.00 7 6 1 0 0
..................................................TGAAGTAGTTGATACAGAGGCGA......................................................................................... 23 2 1 7.00 7 7 0 0 0
..................................................TTAAGTAGTTGATACAAAGAC........................................................................................... 21 1 1 7.00 7 7 0 0 0
..................................................TTAAGGAGTTGATACAAAGGCGG......................................................................................... 23 2 1 7.00 7 2 5 0 0
..................................................TTATGTAGTTGATAAAAAGGCGA......................................................................................... 23 2 1 7.00 7 7 0 0 0
..................................................TGAAGCAGTTGATACAAAGGCGA......................................................................................... 23 2 2 6.50 13 13 0 0 0
.........................................................................................GGATTGTGTGAGCTACTTAAATT.................................................. 23 2 2 6.50 13 13 0 0 0
..................................................TGAAGTAGTTGATACAAAGACGA......................................................................................... 23 2 1 6.00 6 6 0 0 0
....................................................AACTAGTTGATACAAAGGCGA......................................................................................... 21 1 1 6.00 6 6 0 0 0
.........................................................................................GCATTGTGCGAGCTACTTAAAT................................................... 22 1 1 6.00 6 5 1 0 0
..................................................TTAAGTAGTTGATAAAAAGGGGA......................................................................................... 23 2 1 6.00 6 6 0 0 0
..................................................TGAAGTAGTTGATACGAAGGCGA......................................................................................... 23 2 1 6.00 6 6 0 0 0
..................................................TTACGTAGTTGATACAAAGGCGA......................................................................................... 23 1 1 6.00 6 4 2 0 0
..................................................TTAAGTAGTTGATACAAAGGCGATA....................................................................................... 25 2 1 6.00 6 5 1 0 0
...................................................CAAGTAGTTGATACAAAGGCGA......................................................................................... 22 1 1 6.00 6 6 0 0 0
.........................................................................................GCATTGTATGAGCTACTTAAAT................................................... 22 1 1 6.00 6 4 2 0 0
..................................................TGAAGTAGTAGATACAAAGGCGA......................................................................................... 23 2 1 6.00 6 6 0 0 0
..................................................TTATGTAGTTGATACAAAGGCGAC........................................................................................ 24 2 1 6.00 6 6 0 0 0
.................................................CTTAAGTAGTTGATATAAAGGCGA......................................................................................... 24 1 1 6.00 6 6 0 0 0
...................................................TAAGTAGTTGATACAAAGGCGAA........................................................................................ 23 0 1 6.00 6 5 1 0 0
..................................................TGAAGTAGTTGATACAAAGGCCA......................................................................................... 23 2 1 6.00 6 6 0 0 0
...................................................TAAGTAGTTGATACAAGGGCGAT........................................................................................ 23 2 1 6.00 6 6 0 0 0
.................................................CTTAAGTAGTTGATACAAAGGCGTC........................................................................................ 25 2 1 6.00 6 6 0 0 0
..................................................TTATGTAGTTGATACAAAGGCGAT........................................................................................ 24 2 1 6.00 6 6 0 0 0
..................................................TTAAGGAGTTGATACAAAGGAGA......................................................................................... 23 2 1 6.00 6 5 1 0 0
..................................................TGAACTAGTTGATACAAAGGCGA......................................................................................... 23 2 1 6.00 6 6 0 0 0
..................................................TGAAGTAGTTGATACAAAGGCTA......................................................................................... 23 2 1 6.00 6 6 0 0 0
.................................................CATAAGTAGTTGATACAAAGGCGA......................................................................................... 24 1 1 6.00 6 6 0 0 0
.........................................................................................GCATTGTGTGAGCTACTTAGAT................................................... 22 1 1 6.00 6 1 5 0 0
..................................................TGAAGTAGTTGATACAAAGGTGA......................................................................................... 23 2 1 6.00 6 6 0 0 0
.........................................................................................GCCTTGTGTGAGCTACTTAAAT................................................... 22 1 1 6.00 6 6 0 0 0
.........................................................................................GCATTGTGTGAGCCACTTAAAT................................................... 22 1 1 6.00 6 0 6 0 0
.........................................................................................GCATTGTGTGAGCTACTTAAACT.................................................. 23 2 1 6.00 6 3 3 0 0
.........................................................................................GCATTGTGTGATCTACTTAAAT................................................... 22 1 1 6.00 6 2 4 0 0
.....................................................AGCAGTTGATACAAAGGCGA......................................................................................... 20 1 1 6.00 6 6 0 0 0
..................................................TGAAGTAGTTGATATAAAGGCGA......................................................................................... 23 2 1 5.00 5 5 0 0 0
..................................................TGGAGTAGTTGATACAAAGGCGA......................................................................................... 23 2 1 5.00 5 5 0 0 0
.........................................................................................GCATTGTGTAAGCTACTTAAAT................................................... 22 1 1 5.00 5 2 3 0 0
.........................................................................................GCATTGTGTGAGCTACTTAAGT................................................... 22 1 1 5.00 5 2 3 0 0
..................................................TGAAGTAGTTGATACAAAGGCGTT........................................................................................ 24 3 1 5.00 5 5 0 0 0
.........................................................................................GGATTGTGTGAGCTACTTAAA.................................................... 21 1 2 5.00 10 10 0 0 0
..................................................TTAAGTAGTTGCTAAAAAGGCGA......................................................................................... 23 2 1 5.00 5 5 0 0 0
..................................................GTAAGTAGTTGATACAAAGGCG.......................................................................................... 22 1 1 5.00 5 5 0 0 0
..................................................TTATGTAGTTGATACAAAGG............................................................................................ 20 1 1 5.00 5 5 0 0 0
..................................................CTAAGTAGTTGATACAAGGGC........................................................................................... 21 2 1 5.00 5 4 1 0 0
..................................................TTAAGTAGTTGATAAAAAGGCG.......................................................................................... 22 1 1 5.00 5 4 1 0 0
.................................................CTTAAGTAGTTGATACAAAGGCGAA........................................................................................ 25 0 1 5.00 5 5 0 0 0
..................................................TGAAGTAGTTGATACAAACGCGA......................................................................................... 23 2 1 5.00 5 5 0 0 0
.........................................................................................GCATTGTGTGAGCTACTT....................................................... 18 0 1 5.00 5 5 0 0 0
....................................................AAGCAGTTGATACAAAGGCGA......................................................................................... 21 1 1 5.00 5 5 0 0 0
.................................................CTTAAGTAGTTGATACAAATGCGA......................................................................................... 24 1 1 5.00 5 5 0 0 0
..................................................TTAAGTAGTTGATACAAAGGCGAG........................................................................................ 24 1 1 5.00 5 5 0 0 0
.................................................CTCAAGTAGTTGATACAAAGGCG.......................................................................................... 23 1 1 5.00 5 5 0 0 0
..................................................TTAAGTAGTTGATACAAAG............................................................................................. 19 0 1 5.00 5 5 0 0 0
..................................................TTAAGGAGTTGATACAAAGGCGAT........................................................................................ 24 2 1 5.00 5 5 0 0 0
...........................................................................................ATTGTGTGAGCTACTTAAATC.................................................. 21 1 1 5.00 5 5 0 0 0
.................................................CTTAAGTAGTTGATCCAAAGGCGA......................................................................................... 24 1 1 5.00 5 5 0 0 0
...............................................AGCTTAAGTAGTTGATACAAAGGCGA......................................................................................... 26 2 1 5.00 5 5 0 0 0
.........................................................................................GGATTGTGTGAGCTACTTAAAC................................................... 22 2 2 4.50 9 9 0 0 0
..................................................TTAAGTAGTTGATACTAAGGCCA......................................................................................... 23 2 1 4.00 4 4 0 0 0
.........................................................................................CCATTGTGTGAGCTACTTAAATC.................................................. 23 2 1 4.00 4 4 0 0 0
..................................................TTAAGTATTTGATAAAAAGGCGA......................................................................................... 23 2 1 4.00 4 4 0 0 0
.................................................CGTAAGTAGTTGATACAAAGGCGAT........................................................................................ 25 2 1 4.00 4 4 0 0 0
.........................................................................................GCATTGTGTGAGTTACTTAAAT................................................... 22 1 1 4.00 4 1 3 0 0
..................................................TTAAGTAGTTGATACAAAAG............................................................................................ 20 1 1 4.00 4 4 0 0 0
................................................CCTTAAGTAGTTGATACAAAGGCGA......................................................................................... 25 1 1 4.00 4 4 0 0 0
.........................................................................................GCATTGGGTGAGCTACTTAAATC.................................................. 23 2 1 4.00 4 3 1 0 0
.................................................CTCAAGTAGTTGATACAAAGGC........................................................................................... 22 1 1 4.00 4 4 0 0 0
.................................................CTTTAGTAGTTGATACAAAGGC........................................................................................... 22 1 1 4.00 4 3 1 0 0
..................................................TTATGTAGTTGATACAAAGGCGT......................................................................................... 23 2 1 4.00 4 4 0 0 0
..................................................TTAAGTAGTTGATACAAAGGCGACT....................................................................................... 25 1 1 4.00 4 4 0 0 0
.................................................CTTTAGTAGTTGATACAAAGGCG.......................................................................................... 23 1 1 4.00 4 4 0 0 0
..................................................TGTAGTAGTTGATACAAAGGCGA......................................................................................... 23 2 1 4.00 4 4 0 0 0
..................................................TTAAGTAGCTGATACAAAGGCG.......................................................................................... 22 1 1 4.00 4 4 0 0 0
..................................................TTATGTAGTTGATACAGAGGCGA......................................................................................... 23 2 1 4.00 4 4 0 0 0
...................................................TAAGTAGTTGATACAAGGGCGA......................................................................................... 22 1 1 4.00 4 3 1 0 0
.........................................................................................GCATTGTGTGAGCTACTTATAT................................................... 22 1 1 4.00 4 2 2 0 0
..................................................TTAAGGAGTTGATACAAAGG............................................................................................ 20 1 1 4.00 4 4 0 0 0
..................................................TTAAGTAGTTAATACAAGGGCGA......................................................................................... 23 2 1 4.00 4 1 2 1 0
..................................................TTAAGTAGTTAATACAATGGCGA......................................................................................... 23 2 1 4.00 4 1 0 0 3
..................................................CTAAGGAGTTGATACAAGGGCGA......................................................................................... 23 3 1 4.00 4 4 0 0 0
...................................................TAAGTAGTTGATACAAAGGCGAT........................................................................................ 23 1 1 4.00 4 4 0 0 0
.................................................CTTAAGTAGTTGGTACAAAGGCGA......................................................................................... 24 1 1 4.00 4 4 0 0 0
..................................................TTATGTAGTTGATACAAAGGCAA......................................................................................... 23 2 1 4.00 4 4 0 0 0

Anti-sense strand reads

CGTATTTATGTTTGTAAGTATTTATGATTCAAAACTACTTTTAAGTCGTGAATTCATCAACTATGTTTCCGCTTAAATAATTTAAATAGCGTAACACACTCGATGAATTTACTGTCTAAAAATATCATGCTGATTTTATTATTCACGTGTTTAAATGCTTTT

************************************(((((((((...((.((((((((((.((((((..((((..............)))).)))))).)))))))))).))...)))))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M060

embryo
.......................................................................................AGCGTAACATAGTTGATGAATT..................................................... 22 3 3 0.67 2 2
.......................................................................................AGCGGAACATAGTCGATGAATT..................................................... 22 3 4 0.25 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6500:16664678-16664839 + dmo_20 confident GCATAAATA-CAAACATTCATAAATACTAAGTTTT-------------GATG-----------------AAA-ATTCAGCACTTAAGTAGTTGATACAAA-GGCG-AATTTATTAAATTTATCGCATTGTGT--GAGCTACTTAAA----TGACAGATTTTTATAGTACGACTAAAATA----ATAAGTGCACAAATTTACGAAAA
droVir3 scaffold_12723:5043893-5044008 - dvi-mir-1002 Known_mirbase AATTTAAAT------------CATTGCTAAGGCTTGCTGC--------AATG-----------------AAA-ATTGAACGCTTAAGTAGTTAATACAAG-GGCG-AGTTTTTTCT-TGCATCGCATTGTGT--GACCTACTTAAA----TGACAAATTTTCA-------------------------------------------
droGri2 scaffold_15126:8057181-8057337 - dgr_79 candidate GCAAACTGT--AAATATTTA----------TAATCACTGT--------ATTG-----------------AAA-ATTTAACACTTAAGTAGTTGATACAAG-GGCG-AGTTTCATAA-AGTATCGCATTGTGT--GACCTACTTGAA----TGAGAGATTTTTAAGATAC-TGT-AAATTATGAATAAATGTAGCAATTTAATAAAG
droWil2 scf2_1100000004521:6850296-6850348 + AAATTACAT---------------------------------------------------------------------------------------------------------------------------------------------------ATTTCGGTGATCCGACAAAGCTA----A-AGCTACAGCAACCTTC-AAGT
droBip1 scf7180000395938:8038-8199 + ACAAAAAAA-CAAGC-TTTA----------AAATAATTGGTAATTTTTGGTAACAATAATTGGTAACAGCAA-ACTCAACG---AAAACAGTGAGACAAA-CACA-AAACTCATAA-TGCATAGCGACATAG--AGGCGGCATAGCTGTCTGCAAAATCTATCG-----------------------GTGCTTTAACTACAAAAAA
droFic1 scf7180000453925:244799-244949 - TAAATATTTTTTTATTTACTTTAAAACAATTTTTT-------------GATGT-------TGC--TTGAAAAAATCAGCCACTTAAGTAGGACATACAAT-G-CGAACTTTTTTATATAAATCGCCTTTTGTATCCACTACTTAAA----CGTATGATTTTTTAA-TATGTTAAAA--------------------------ATAA
droEug1 scf7180000409452:319589-319737 - AACATTATT------------ATATACAAATTA---ATTT--------TACA-----------------AAA-ATCATATACTTAAGTAGTGGATACAAATTGCG-ATTTTAAAAT-ATACTCGCATTGTAT--GGCCTACTTAGT----TAGTTGATTTTTAACA-CCGTCA-AGATAAAAGGCAAGTGAATGAAATT------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
GCATAAATA-CAAACATTCATAAATACTAAGTTTT-------------GATG-----------------AAA-ATTCAGCACTTAAGTAGTTGATACAAA-GGCG-AATTTATTAAATTTATCGCATTGTGT--GAGCTACTTAAA----TGACAGATTTTTATAGTACGACTAAAATA----ATAAGTGCACAAATTTACGAAAASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..................................................................................TTAAGTAGTTGATACAAA-GGCG-A...................................................................................................231181631.0018163154018001776053
...........................................................................................................................GCATTGTGT--GAGCTACTTAAA----T.......................................................2213957.003957024200015370
.................................................................................CTTAAGTAGTTGATACAAA-GGCG-A...................................................................................................2412674.0026740220026520
..................................................................................TTAAGTAGTTGATACAAA-GGCG-....................................................................................................2211512.0015120610014510
...................................................................................TAAGTAGTTGATACAAA-GGCG-A...................................................................................................221767.0076704007630
..................................................................................TTAAGTAGTTGATACAAA-GGC......................................................................................................211634.00634078005560
..................................................................................TTAAGTAGTTGATACAAA-GGCG-AT..................................................................................................241493.00493015004780
...........................................................................................................................GCATTGTGT--GAGCTACTTAAA----TC......................................................231449.00449077003720
..................................................................................TTAAGTAGTTGATACAAA-GGCG-G...................................................................................................231344.00344017003270
....................................................................................AAGTAGTTGATACAAA-GGCG-A...................................................................................................211243.0024303002400
.................................................................................CTTAAGTAGTTGATACAAA-GGC......................................................................................................221236.00236017002190
...........................................................................................................................GCATTGTGT--GAGCTACTTAAA----........................................................211235.00235015600790
..................................................................................TTAAGTAGTTGATACAAA-GGCG-AA..................................................................................................241210.00210010002000
..................................................................................TTAAGTAGTTGATACAAA-GG.......................................................................................................201207.0020703002040
..................................................................................TTAAGTAGTTGATACAAA-GGCG-AC..................................................................................................241205.0020503002020
..................................................................................TTAAGTAGTTGATACAAA-GGCG-T...................................................................................................231196.0019609001870
...........................................................................................................................GCATTGTGT--GAGCTACTTAAA----C.......................................................221190.00190048001420
.................................................................................CTTAAGTAGTTGATACAAA-GGCG-....................................................................................................231174.0017408001660
...........................................................................................................................GCATTGTGT--GAGCTACTTAAA----TT......................................................231167.0016707000970
............................................................................................................................CATTGTGT--GAGCTACTTAAA----T.......................................................211120.0012008800320
............................................................................................................................CATTGTGT--GAGCTACTTAAA----TG......................................................22199.009907100280
..................................................................................TTAAGTAGTTGATACAAA-GGCG-C...................................................................................................23188.008801600720
............................................................................................................................CATTGTGT--GAGCTACTTAAA----TC......................................................22171.007102000510
..................................................................................TTAAGTAGTTGATACAAA-GGCG-TC..................................................................................................24153.00530200510
.......................................................................................TAGTTGATACAAA-GGCG-A...................................................................................................18146.00460000460
............................................................................................................................CATTGTGT--GAGCTACTTAAA----TT......................................................22142.004202300190
..................................................................................TTAAGTAGTTGATACAAA-GGCG-TT..................................................................................................24130.00300100290
..................................................................................TTAAGTAGTTGATACAAA-GGCA-....................................................................................................22124.00240000240
..................................................................................TTAAGTAGTTGATACAAA-GGCG-ATC.................................................................................................25123.00230000230
.....................................................................................AGTAGTTGATACAAA-GGCG-A...................................................................................................20123.00230000230
..................................................................................TTAAGTAGTTGATACAAA-GGCG-AAA.................................................................................................25117.00170000170
......................................................................................GTAGTTGATACAAA-GGCG-A...................................................................................................19117.00170100160
.................................................................................CTTAAGTAGTTGATACAAA-GGCG-AT..................................................................................................25113.00130000130
.............................................................................................................................ATTGTGT--GAGCTACTTAAA----T.......................................................20113.00130300100
............................................................................................................................CATTGTGT--GAGCTACTTAAA----........................................................20113.00130100030
..................................................................................TTAAGTAGTTGATACAAA-GGCC-....................................................................................................22113.00130000130
...........................................................................................................................GCATTGTGT--GAGCTACTTAAA----CC......................................................23112.00120000120
...........................................................................................................................GCATTGTGT--GAGCTACTTAAA----TTC.....................................................24110.0010020080
...........................................................................................................................GCATTGTGT--GAGCTACTTAAA----TCC.....................................................2419.009000090
............................................................................................................................CATTGTGT--GAGCTACTTAAA----TA......................................................2219.009060030
...........................................................................................................................GCATTGTGT--GAGCTACTTAA.............................................................2019.009050040
.................................................................................CTTAAGTAGTTGATACAAA-GGCG-T...................................................................................................2418.008000080
.................................................................................CTTAAGTAGTTGATACAAA-GGCG-C...................................................................................................2418.008000080
..................................................................................TTAAGTAGTTGATACAAA-GGCG-AAC.................................................................................................2517.007000070
.................................................................................CTTAAGTAGTTGATACAAA-GGCG-G...................................................................................................2417.007000070
.................................................................................CTTAAGTAGTTGATACAAA-GG.......................................................................................................2117.007010060
..................................................................................TTAAGTAGTTGATACAAA-GGCG-ATA.................................................................................................2516.006010050
...................................................................................TAAGTAGTTGATACAAA-GGCG-AA..................................................................................................2316.006010050
.................................................................................CTTAAGTAGTTGATACAAA-GGCG-TC..................................................................................................2516.006000060
...........................................................................................................................GCATTGTGT--GAGCTACTTAAA----CT......................................................2316.006030030
.................................................................................CTTAAGTAGTTGATACAAA-GGCG-AA..................................................................................................2515.005000050
...........................................................................................................................GCATTGTGT--GAGCTACTT...............................................................1815.005000050
..................................................................................TTAAGTAGTTGATACAAA-GGCG-AG..................................................................................................2415.005000050
..................................................................................TTAAGTAGTTGATACAAA-G........................................................................................................1915.005000050
.............................................................................................................................ATTGTGT--GAGCTACTTAAA----TC......................................................2115.005000050
...................................................................................TAAGTAGTTGATACAAA-GGCG-AT..................................................................................................2314.004000040
droVir3
AATTTAAAT------------CATTGCTAAGGCTTGCTGC--------AATG-----------------AAA-ATTGAACGCTTAAGTAGTTAATACAAG-GGCG-AGTTTTTTCT-TGCATCGCATTGTGT--GACCTACTTAAA----TGACAAATTTTCA-------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..................................................................................TTAAGTAGTTAATACAAG-GGCG-A...................................................................................................2318526.0085261113826010100000000000000001000102625927390010102185611061711623362491921861750004692049270021312510010112975674551
..................................................................................TTAAGTAGTTAATACAAG-GGCG-....................................................................................................221517.005170011200000000000001000001000001000000000000001079143430513719242300045890000000100000013500
...................................................................................TAAGTAGTTAATACAAG-GGCG-A...................................................................................................221474.004740001650000000000000000000000110000002180000010173371217171910700048107010001220000002101351
...........................................................................................................................GCATTGTGT--GACCTACTTAAA----T.......................................................221406.004060001000000000000000000000000000000000010000000213141231181811101712000213100000112700000033141513
..................................................................................TTAAGTAGTTAATACAAG-GGC......................................................................................................21187.0087000380000000000000000000000000000000000000000000133584410001060000020000000000002
..................................................................................TTAAGTAGTTAATACAAG-GG.......................................................................................................20176.0076000160000000000000000000000000000000000000000021262929870001020000000000000000000
..................................................................................TTAAGTAGTTAATACAAG-GGCG-AT..................................................................................................24167.006700028000000000000000000000000000000000000000000201075135000560000010000000002100
..................................................................................TTAAGTAGTTAATACAAG-GGCG-AA..................................................................................................24153.0053000250000000000000000000000000001000000000000000011221300003110000000100000010001
...................................................................................TAAGTAGTTAATACAAG-GGCG-....................................................................................................21132.00320015000000000000000000000000000000000000000000131122513000050000000000000000110
...........................................................................................................................GCATTGTGT--GACCTACTTAAA----........................................................21129.00290005000000000000000000000000000000011000000001013050120000340000000100000010000
..................................................................................TTAAGTAGTTAATACAAG-GGCG-C...................................................................................................23127.002700040000000000000000000000000000000000000000000000101110001180000000000000000000
..................................................................................TTAAGTAGTTAATACAAG-GGCG-T...................................................................................................23126.002600012000000000000000000000000000000000000000000001041000000260000000000000000000
..................................................................................TTAAGTAGTTAATACAAG-GGCG-G...................................................................................................23126.00260007000000000000000000000000000000000000000000000031121000470000000000000000000
..................................................................................TTAAGTAGTTAATACAAG-GGCG-AC..................................................................................................24125.00250006000000000000000000000000000000000000000001001140220000710000000000000000000
...........................................................................................................................GCATTGTGT--GACCTACTTAAA----TT......................................................23123.00230005000000000000000000000000000000000000000002014020001000030000001100000002100
.................................................................................CTTAAGTAGTTAATACAAG-GGCG-A...................................................................................................24113.00130008000000000000000000000000000000000000000000000000000000050000000000000000000
..................................................................................TTAAGTAGTTAATACAAG-GGCG-ATC.................................................................................................25112.00120000000000000000000000000000000000000000000000012141011000100000000000000000000
....................................................................................AAGTAGTTAATACAAG-GGCG-A...................................................................................................2116.0060004000000000000000000000000000000000000000000000000000000010000000000000000001
..................................................................................TTAAGTAGTTAATACAAG-GGCG-AAA.................................................................................................2516.0060004000000000000000000000000000000000000000000000000000000110000000000000000000
..................................................................................TTAAGTAGTTAATACAAG-G........................................................................................................1915.0050001000000000000000000000000000000000000000000001002000000100000000000000000000
...................................................................................TAAGTAGTTAATACAAG-GGCG-AT..................................................................................................2315.0050002000000000000000000000000000000000000000000000000100000000000000000000001100
...................................................................................TAAGTAGTTAATACAAG-GG.......................................................................................................1914.0040001000000000000000000000000000000000000000000000110010000000000000000000000000
...................................................................................TAAGTAGTTAATACAAG-GGCG-C...................................................................................................2214.0040002000000000000000000000000000000000000000000000000000000020000000000000000000
...................................................................................TAAGTAGTTAATACAAG-GGCG-T...................................................................................................2213.0030000000000000000000000000000000000000000000000010001100000000000000000000000000
..................................................................................TTAAGTAGTTAATACAAG-GGCT-....................................................................................................2213.0030000000000000000000000000000000000000000000000100000001000100000000000000000000
............................................................................................................................CATTGTGT--GACCTACTTAAA----T.......................................................2113.0030001000000000000000000000000000000000000000000000001000000010000000000000000000
...........................................................................................................................GCATTGTGT--GACCTACTT...............................................................1812.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................GCATTGTGT--GACCTACTTAAA----C.......................................................2212.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................GTTTTTTCT-TGCATCGCATTGTGT--GACCTACTTAAA----T.......................................................3712.0020000000000000000000000000000000000000000000000000000011000000000000000000000000
..................................................................................TTAAGTAGTTAATACAAG-GGCG-TT..................................................................................................2412.0020001000000000000000000000000000000000000000000000000000000010000000000000000000
...........................................................................................................................GCATTGTGT--GACCTACTTAA.............................................................2012.0020000000000000000000000000000000000000000000000000010000000010000000000000000000
...................................................................................TAAGTAGTTAATACAAG-GGCG-AG..................................................................................................2312.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TTAAGTAGTTAATACAAG-GGCA-....................................................................................................2212.0020001000000000000000000000000000000000000000000000000001000000000000000000000000
..................................................................................TTAAGTAGTTAATACAAG-GGCG-ATA.................................................................................................2512.0020000000000000000000000000000000000000000000000000001010000000000000000000000000
...................................................................................TAAGTAGTTAATACAAG-GGC......................................................................................................2012.0020001000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................TTAAGTAGTTAATACAAG-GGCC-....................................................................................................2212.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................GCATTGTGT--GACCTACTTAAA----TA......................................................2312.0020000000000000000000000000000000000000000000001000010000000000000000000000000000
..................................................................................TTAAGTAGTTAATACAAG-GGCG-AAAC................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000010000000000000000100
...................................................................................TAAGTAGTTAATACAAG-GGCG-AGT.................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000100
...................................................................................TAAGTAGTTAATACAAG-GGCG-AC..................................................................................................2311.0010000000000000000000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................GCATCGCATTGTGT--GACCTACTTAA.............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................GTTTTTTCT-TGCATC...................................................................................1511.0010000000000000000000000000000000000000000000000000001000000000000000000000000000
.....................................................................................AGTAGTTAATACAAG-GGCG-A...................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
..........................................................................................................................CGCATTGTGT--GACCTACTTAA.............................................................2111.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TTAAGTAGTTAATACAAG-GGCG-AAC.................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................................................................................................................GCATTGTGT--GACCTACTTAAA----TTT.....................................................2411.0010000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................TCGCATTGTGT--GACCTACTTAA.............................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
..........................................................................................................................CGCATTGTGT--GACCTACTTA..............................................................2011.0010000000000000000000000000000000000000000000000100000000000000000000000000000000
....................................................................................AAGTAGTTAATACAAG-GGCG-AGT.................................................................................................2311.0010000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................TTAAGTAGTTAATACAAG-GA.......................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
..................................................................................TTAAGTAGTTAATACAAG-GGCG-TC..................................................................................................2411.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TAAGTAGTTAATACAAG-GGCG-TT..................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
............................................................................................................TTTTTTCT-TGCATCGCATTGTGT--GACCT...................................................................2811.0010000000000000000000000000000000000000000000000000010000000000000000000000000000
droGri2
GCAAACTGT--AAATATTTA----------TAATCACTGT--------ATTG-----------------AAA-ATTTAACACTTAAGTAGTTGATACAAG-GGCG-AGTTTCATAA-AGTATCGCATTGTGT--GACCTACTTGAA----TGAGAGATTTTTAAGATAC-TGT-AAATTATGAATAAATGTAGCAATTTAATAAAGSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..................................................................................TTAAGTAGTTGATACAAG-GGCG-A...................................................................................................2312.00202
droWil2
AAATTACAT---------------------------------------------------------------------------------------------------------------------------------------------------ATTTCGGTGATCCGACAAAGCTA----A-AGCTACAGCAACCTTC-AAGTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
No Reads
droBip1
ACAAAAAAA-CAAGC-TTTA----------AAATAATTGGTAATTTTTGGTAACAATAATTGGTAACAGCAA-ACTCAACG---AAAACAGTGAGACAAA-CACA-AAACTCATAA-TGCATAGCGACATAG--AGGCGGCATAGCTGTCTGCAAAATCTATCG-----------------------GTGCTTTAACTACAAAAAASizeHit CountTotal NormTotal
No Reads
droFic1
TAAATATTTTTTTATTTACTTTAAAACAATTTTTT-------------GATGT-------TGC--TTGAAAAAATCAGCCACTTAAGTAGGACATACAAT-G-CGAACTTTTTTATATAAATCGCCTTTTGTATCCACTACTTAAA----CGTATGATTTTTTAA-TATGTTAAAA--------------------------ATAASizeHit CountTotal NormTotal
No Reads
droEug1
AACATTATT------------ATATACAAATTA---ATTT--------TACA-----------------AAA-ATCATATACTTAAGTAGTGGATACAAATTGCG-ATTTTAAAAT-ATACTCGCATTGTAT--GGCCTACTTAGT----TAGTTGATTTTTAACA-CCGTCA-AGATAAAAGGCAAGTGAATGAAATT------ASizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 06:58 PM