ID:

dmo_1997

 Coordinate:

scaffold_6540:20096913-20097063 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.7 -22.3 -22.3 -22.2

Flybase annnotation

CDS [Dmoj\GI22710-cds]; exon [dmoj_GLEANR_7904:1]; intron [Dmoj\GI22710-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-
mature
  1. scaffold_6328:2184448-2184468 -
  2. scaffold_6473:2079204-2079224 -
  3. scaffold_6473:5143245-5143265 -
  4. scaffold_6473:12922585-12922605 +
  5. scaffold_6473:14719085-14719105 -
  6. scaffold_6482:818069-818089 -
  7. scaffold_6496:16384471-16384491 -
  8. scaffold_6500:5766110-5766130 -
  9. scaffold_6500:17686991-17687011 -
  10. scaffold_6540:16143653-16143673 -
  11. scaffold_6540:17882735-17882755 -
  12. dmo_1997  scaffold_6540:20096922-20096942 -
  13. scaffold_6540:28675227-28675247 -
  14. scaffold_6540:31981520-31981540 -
  15. scaffold_6654:1100943-1100963 -
  16. scaffold_6680:6224582-6224602 -
  17. scaffold_6680:6445245-6445265 -
  18. scaffold_6680:6710325-6710345 -
  19. scaffold_6680:7458350-7458370 -
  20. dmo_2527  scaffold_6680:18264104-18264124 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCCCCGCATGGGACAGGCCGTAGGCGGACCGCCGCTCGACATGGAAAATGGTTGGTCCACTAGCTTTTCCTACACTCTCGTATTGCTCGTACTGCTCGTATTGTTCGTATTGTGTTGTACCTCCTCCACTACCACCTATTGCAACTACAGCAACAGCAATAAGCAACAACAGCAACAACAACAACAGCAACTACAGCTACAACCAGCAACAACTATTTACTAAAGCAAATTCACAAGTTTCTATTATTCTT
**************************************************..((........(((..............((.(((((.....((((..(((((((.((.((((((((((....................)))))).))))..))))))))))))).....)))))..))...............)))..))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V056
head
 V049
head
 M060
embryo
............................................................................................................ATTGAGCTGTACCTTCTCCAC.......................................................................................................................... 21 3 4 7.25 29 8 15 4 2 0
.............................................................................................................................................................................................................GCATCAACTAGTTACTAAAG.......................... 20 2 1 6.00 6 5 1 0 0 0
............................................................................................................................................................................................................TGCATCAACTAGTTACTAAAG.......................... 21 3 4 1.75 7 4 2 0 1 0
.............................................................................................................................................................................................................GCATCAACTAGTTACTAAA........................... 19 2 3 1.33 4 4 0 0 0 0
..........GGACAGGCCGTAGGCGGACCGCCGCTC...................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................GCATCAACTAGTTACTAAAGG......................... 21 3 2 1.00 2 2 0 0 0 0
............................................................................................................ATTGAGCTGTACCTTCTCCA........................................................................................................................... 20 3 16 0.94 15 6 8 0 1 0
.............................................................................................................TTGAGCTGTACCTTCTCCAC.......................................................................................................................... 20 3 8 0.63 5 1 3 0 1 0
...............................................................................................................................................................................................................ATCAACTAGTTACTAAAG.......................... 18 2 8 0.63 5 4 0 0 1 0
..............................................................................................................................................................................................................CATCAACTAGTTACTAAAG.......................... 19 2 2 0.50 1 1 0 0 0 0
...............................................................................................................................................................................................................ATCAACTAGTTACTAAAGG......................... 19 3 20 0.45 9 9 0 0 0 0
..............................................................................................................................................................................................................CATCAACTAGTTACTAAAGG......................... 20 3 7 0.29 2 1 0 1 0 0
....................................................................................................TTGTTCGTATAGTTGTGTAC................................................................................................................................... 20 3 20 0.15 3 1 2 0 0 0
............................................................................................................................................................................................................TGCATCAACTAGTTACTAAA........................... 20 3 20 0.10 2 2 0 0 0 0
...............................................................................................................................................................................................................ATCAACTAGTTACTAAAGCT........................ 20 3 15 0.07 1 0 0 0 1 0
...........................................................................................................................................................................GCAACAACAACAACAGCAACT........................................................... 21 0 20 0.05 1 1 0 0 0 0
..................................................................................................TGTTGTTCGTATAGTGGTGT..................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................AACAGCAACAACAACAACAGCA.............................................................. 22 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................ACAACAGCAACAACAACAACAGCA.............................................................. 24 0 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

AGGGGCGTACCCTGTCCGGCATCCGCCTGGCGGCGAGCTGTACCTTTTACCAACCAGGTGATCGAAAAGGATGTGAGAGCATAACGAGCATGACGAGCATAACAAGCATAACACAACATGGAGGAGGTGATGGTGGATAACGTTGATGTCGTTGTCGTTATTCGTTGTTGTCGTTGTTGTTGTTGTCGTTGATGTCGATGTTGGTCGTTGTTGATAAATGATTTCGTTTAAGTGTTCAAAGATAATAAGAA
**************************************************..((........(((..............((.(((((.....((((..(((((((.((.((((((((((....................)))))).))))..))))))))))))).....)))))..))...............)))..))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M046
female body
 V110
male body		 V056
head
 M060
embryo
............................................................................................................TAACTCGACATGGAAGAGGTG.......................................................................................................................... 21 3 4 4.75 19 5 11 3 0
............................................................................................................................................................................................................ACGTAGTTGATCAATGATTTC.......................... 21 3 4 4.50 18 16 1 1 0
..............................................................................................................................................................................................................GTAGTTGATCAATGATTTC.......................... 19 2 2 1.50 3 2 1 0 0
.............................................................................................................................................................................................................CGTAGTTGATCAATGATTT........................... 19 2 3 0.67 2 2 0 0 0
.............................................................................................................................................................................................................CGTAGTTGATCAATGATTTCC......................... 21 3 2 0.50 1 1 0 0 0
...............................................................................................................CACAACGTGGAGGAGGTGGTG....................................................................................................................... 21 2 2 0.50 1 0 1 0 0
............................................................................................................................................................................................................ACGTAGTTGATCAATGATTT........................... 20 3 20 0.30 6 6 0 0 0
.............................................................................................................AACTCGACATGGAAGAGGTG.......................................................................................................................... 20 3 8 0.25 2 1 1 0 0
..............................................................................................................................................................................................................GTAGTTGATCAATGATTTCC......................... 20 3 7 0.14 1 0 1 0 0
............................................................................................................TAACTCGACATGGAAGAGGT........................................................................................................................... 20 3 16 0.13 2 1 1 0 0
...............................................................................................................................................................................................................TAGTTGATCAATGATTTC.......................... 18 2 8 0.13 1 1 0 0 0
..........................................................................TAGAGCATCACGAGCATGAG............................................................................................................................................................. 20 3 8 0.13 1 0 1 0 0
....................................................................................................AACAAGCATATCAACACATG................................................................................................................................... 20 3 20 0.10 2 2 0 0 0
............................................................................................................................................................................................TTGATGTGGATGTAGGTAGT........................................... 20 3 15 0.07 1 0 1 0 0
.....................................................................................................................................................................................................ATGTTGGGCGTTGGTAATA................................... 19 3 19 0.05 1 0 0 0 1
..............................................................................................................................................................................................................GTAGTTGATGAGTGATTTC.......................... 19 3 20 0.05 1 1 0 0 0
.........................................................................................................................................................CTCTTTATTCGTTGTTGTCTTT............................................................................ 22 3 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................................TAGTTGATCAATGATTTCC......................... 19 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droMoj3 scaffold_6540:20096863-20097113 - dmo_1997 TCC------CCGCATGGGACAGGCCGTAGGCGGACCGCCGCTCGACATGGAAAATGGTTGGTCCA-CTAGCTTTT-CCTAC-----------ACTCTCGTATTGCTCGTACT-GCTCGTATT-----GTTCGTATTGTGTTG--T--------------ACCTCCTC----CACTACCACCTATTG--------------------CAACTACAGCA---------------------ACAGC---------AATAAGC---AACAACAGCAACAA---CAACAACAGCAA---------CTACAGC---T-ACAA-------------------C----------------CAGCAACA------------ACTATTT------------------------ACTAAAGCAAATTCACA-------A---------------------GTT-------TCTATTATTCTT
droVir3 scaffold_13047:3055101-3055334 - dvi_15332 TCC------GCGCATGGGACAGGCCGTTGGCGGTCCGCCGCTCGACATGGAGAATGGTTGGTCTATCTAACTTT---CTACA-------CACACTCTC-TCTTTCTCTTACT--CTCGTATT-----GCTCGTATTGTGTTG--T--------------A-------CCTTCACTACCACCTATTGCCA-----------------CCACAGCAACA---------------------AT----------------------AGCAACAAAAGCAA---CAAAAACAACAA---------TTAAAGT---T-ACAA-------------------GCAACTATAATTA----------TT-------------------------------------------ACTAAAGCAAATTCACA-------A---------------------GTT-------TCTA-------T
droGri2 scaffold_15074:7430680-7430962 - TCC------GCGCATGGGACAAGCAGTTGGTGGACCACCGCTCGACATGGAAAATGGTTGGTCTAACTAACTCTAGTCTAC-----------TCTCTAGT----CCCGTATTTGCTCGTAAT-----GCTCGTATTGTGTTG----------TTTGTAC--------CTTCCACCCACCTTC------ACCACCTCTTGCAAACTGCGGCAGCAGCAA---CAA----------------------------------C---AACAACTGCAACAG---CAACAACAACAA---------CAACAAA---T-ATAA-------------------T----------------ATGCAT-A------------------AAAAGAAAACAAAGCAAATATTTTTACTAAAGCAAATTCACA-------T---------------------GTTCCTAAATATATATATACAT
droWil2 scf2_1100000004510:3277616-3277729 - GCA------C----------------------------------------------------------------------------------GT---------------------------TCTCTTTGTGTTATTTTATC---------------------------------TAACTTTCATTAGAA-----------------CAACAGCAGCA---------------------ATAGC---------AAG-AGC---AACAACAACAACGA---CAACAACAGCAA---------CTACAAC---C-GCAACAAC--------------------A-------------------------------------------------------------------------------ATGAATAT-------------------------------------------
dp5 XL_group3a:672632-672739 - CCC------C------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA--------------------------------------AGCAAC---ACTTGCTGTTGCAGCAGCAGC---------AACAAGC---AGCAACAGCAGCAA---CAA--GCAGCAG---------CAGCAGC---A-GCAA-------------------C----------------AAGCCAAA------------------------------------------------A-----------GCAAACCCAAATCCAAA------------------------------TCCA
droPer2 scaffold_2:3303148-3303255 + TGTCTTGTAC----------------------------------------------------------------------------------A------------------------------------------------------------------GTCCCCTC----CGCAAGCATTA--------------------------ACAACAACA---------------------ACAGC---------AACATAA---AACAACAACAGCAACTACAACAACAACAG---------CAACTACAACA-ATAA---------------------------------------CAACA------------------------------------------------------------ACAATAAC-------------------------------------------
droAna3 scaffold_13047:1229757-1229848 + GCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGCAGCA---------------------GCAGCAGAAACAGCAGC-AAC---AGCAACAGCAGCAA---CAGCAACAGCAG---------CAACAAC---C-ACAACAAC--------------------AACAAGTA----------CT-------------------------------------------ACTAAAGC------------------------------------------------------------
droBip1 scf7180000393900:39052-39147 + TGA------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCTCTC----CA-----------------------------------GCAGCAGCAGCAACAACAGCA---------ACAGC---------AGC-AGC---AACAACAGCAGCAA---CAACAAC---AG---------CAACAGCAGCA-ACAA---------------------------------------CAGCA------------------------------------------------------------GCAACAAC-------------------------------------------
droKik1 scf7180000302486:1652725-1652820 - CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATAACA---------------------ACAGC---------AACAAAC---GACAACAACAGCAA---CAACAATATCAA---------CAACAAC---C-G-----------------------------------------TCA-AC-------------------------------------------ACGAACACTCACTCTCA-------C---------------------ACT-------CCAAATGCTCTG
droFic1 scf7180000453839:334510-334625 - TCG------C----------------------------------------------------------------------------------GA---------------------------CGTT-----CGTGTTGT-------TGTGTTGTTTATGG--------CA---ACAACTACAC-----------------------------GTAGCAAC---ACCCACG---------GCAGC---------AGA-AGC---AGCAACAGCAACAA---CAGCAAC---AGCAACAACAGC-------------------------------------------------------AACA------------------------------------------------------------GCAGCAGCA------------------------------------------
droEle1 scf7180000491212:1134815-1134993 + TCC------GCGAATGGGACAAGCCGTCGGAGGTCCTCCGCTGGACATGGAAAATGGTTGGTCCCCCT----CTA-A----ACACAAAACACAC---------------A------------CTCTACTCCGTATTGTATCCAAT--------------C-------CATC-------------------------------------------------------------------------------------------CACCAAAAAAAAAA---AAAAAACAACCG---------CTACTACCACCAACCA-------------------C----------------T---TGCC------------------------------------------------------------AAAAACAC---------------------GTG-------TCTACTGTCTTT
droRho1 scf7180000770911:355-485 - TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCA--------------------------GTAGCAGCA---------------------GCAGC---AGC---AGGCAGC---AATAGCAGCAGCAG---CAGCAGCAGTAG---------CAACAGCAGCA-GC--------------------------------------AGGCAGCAGTATCAGCCATCACCATCA------------------------ACCAACACCGCCGCAGG-------C---------------------AGT-------TAGGTTATTTTT
droBia1 scf7180000302422:7083317-7083440 + A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAA---CAACA------------ACAGC---------AG----C---AGCAGCAACAACAA---CAGCAGCAACAA---------CTGCTGCAGCG-GCAA---C--------------------AGCAGCAGCAGCAGGCG-AA-------------------------------------------GCAAAA------------------AATATTGCAT----CTTCTCAAGCA-------TTTAATCTTCTT
droTak1 scf7180000415750:464022-464122 - CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCACAGTA---------------------ATAGC---------AACAG-CAGCAGCAGCAGCAACGG---CAACAACAACAG---------CTACGGC---T-ACAA-------------------A----------------AAGCTACA------------------------------------------------------------GCAAGAACATATTACAA----------------------TATATTTTATTT
droEug1 scf7180000409490:62768-62908 + TCC------GAGAATGGGACAAGCCGTTGGTGGTCCTCCGCTGGATATGGAAAATGGTTGGTCTCTCT----TTC-AGCAAA-------CACACACAC-ACACACAATCA------------CTCTACTCCGTATTGTATC--------------------------CATCCACCAAAAACC---------------------------------------------------------------------------------------------------------ACCG---------CCACTACCACA---------------------------------------------------------------------------------------------------------------------------------------------------------------A
dm3 chr3L:7443534-7443652 + CAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCAATTGAT--------------------------GCAGCAAC---ATCAACA---------TCAGC---------AGC-AAC---AGCAACAGCAGCAA---CAGCAAC---AA---------CAGCAGCAG----------C--------------------ACAAC----------CAACA------------------------------------------------------------GCAGCAACATGCTCAGGAGCA--------ATT-------AAGTTTGCATCA
droSim2 3l:12559083-12559190 + CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAA---CA---------------ACAAC---------AACGGAC---AGCAGCAACAACAA---CAACAACAACAA---------CTGCAGT---T-GCAGCAAC--------------------ATTACGAA----------TT-------------------------------------------ACGATAATAATTTC----------C---------------------ATT-------TCTAATTTCCTT
droSec2 scaffold_0:5041550-5041654 + CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCA---------------------ATAAC---------AACGGAC---AGCAACAACAAGAA---CAACAACAACAA---------CTGCAGT---T-GCAGCAAC--------------------ATTACGAA----------TT-------------------------------------------ACGATAATAATTTC----------C---------------------ATT-------TCTAATTTCCTT
droYak3 X:10556940-10557077 - TTA------A----------------------------------------------------------------------------------AC---------------------------CACC----------------------------------------AC----CATCACCACC-------A-----------------CCACCACAACA---------------------ACAAC---------AAAGAAC---AACAACAACAGCAG---CAGCAACATCAG---------CCACTACAACA-ACAA---CAAGAGGAGCAGCAGC-----AACACAGC----------AA-------------------------------------------GCGTTAACG---------------A---------------------GTA-------CTTATTGGTATT
droEre2 scaffold_4770:4857079-4857179 - CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCACAGTA---------------------ATAGC---------AACAG-CAGCAGCAACGGCAACAA---CAACAGCAACAG---------CTACGGC---T-ACAA-------------------C----------------AAGCTACA------------------------------------------------------------GCAAGAACATATTACAA----------------------TATATTTTATTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
TCC------CCGCATGGGACAGGCCGTAGGCGGACCGCCGCTCGACATGGAAAATGGTTGGTCCA-CTAGCTTTT-CCTAC-----------ACTCTCGTATTGCTCGTACT-GCTCGTATT-----GTTCGTATTGTGTTG--T--------------ACCTCCTC----CACTACCACCTATTG--------------------CAACTACAGCA---------------------ACAGC---------AATAAGC---AACAACAGCAACAA---CAACAACAGCAA---------CTACAGC---T-ACAA-------------------C----------------CAGCAACA------------ACTATTT------------------------ACTAAAGCAAATTCACA-------A---------------------GTT-------TCTATTATTCTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................GGACAGGCCGTAGGCGGACCGCCGCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.............................................................................................................................................................................................................................................................................GCAACAA---CAACAACAGCAA---------CT.........................................................................................................................................................................21200.051100000
.........................................................................................................................................................................................................................................................................AACAGCAACAA---CAACAACAGCA.....................................................................................................................................................................................22200.051100000
.......................................................................................................................................................................................................................................................................ACAACAGCAACAA---CAACAACAGCA.....................................................................................................................................................................................24200.051000010
droVir3
TCC------GCGCATGGGACAGGCCGTTGGCGGTCCGCCGCTCGACATGGAGAATGGTTGGTCTATCTAACTTT---CTACA-------CACACTCTC-TCTTTCTCTTACT--CTCGTATT-----GCTCGTATTGTGTTG--T--------------A-------CCTTCACTACCACCTATTGCCA-----------------CCACAGCAACA---------------------AT----------------------AGCAACAAAAGCAA---CAAAAACAACAA---------TTAAAGT---T-ACAA-------------------GCAACTATAATTA----------TT-------------------------------------------ACTAAAGCAAATTCACA-------A---------------------GTT-------TCTA-------TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................GTATT-----GCTCGTATTGTGTTG--T--------------........................................................................................................................................................................................................................................................................................................................2111.001000010000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TA----------TT-------------------------------------------ACTAAAGCAAATTCACA-------............................................2111.001000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................GTATTGTGTTG--T--------------A-------CCTTCACT........................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
droGri2
TCC------GCGCATGGGACAAGCAGTTGGTGGACCACCGCTCGACATGGAAAATGGTTGGTCTAACTAACTCTAGTCTAC-----------TCTCTAGT----CCCGTATTTGCTCGTAAT-----GCTCGTATTGTGTTG----------TTTGTAC--------CTTCCACCCACCTTC------ACCACCTCTTGCAAACTGCGGCAGCAGCAA---CAA----------------------------------C---AACAACTGCAACAG---CAACAACAACAA---------CAACAAA---T-ATAA-------------------T----------------ATGCAT-A------------------AAAAGAAAACAAAGCAAATATTTTTACTAAAGCAAATTCACA-------T---------------------GTTCCTAAATATATATATACATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............CATGGGACAAGCAGTTGGTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
........................................................................................................................................................................................................................AA---CAA----------------------------------C---AACAACTGCAACAG---CAACA...........................................................................................................................................................................................25130.08110
......................................................................................................................................................................................................................................................................AACAACTGCAACAG---CAACAACA........................................................................................................................................................................................22190.05110
.............................................................................................................................................................................................................................CAA----------------------------------C---AACAACTGCAACAG---CAACA...........................................................................................................................................................................................23200.05110
.........................................................................................................................................................................................................................A---CAA----------------------------------C---AACAACTGCAACAG---C...............................................................................................................................................................................................20200.05110
droWil2
GCA------C----------------------------------------------------------------------------------GT---------------------------TCTCTTTGTGTTATTTTATC---------------------------------TAACTTTCATTAGAA-----------------CAACAGCAGCA---------------------ATAGC---------AAG-AGC---AACAACAACAACGA---CAACAACAGCAA---------CTACAAC---C-GCAACAAC--------------------A-------------------------------------------------------------------------------ATGAATAT-------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................AACAACAACGA---CAACAACAGC......................................................................................................................................................................................21130.08100010
............................................................................................................................................................................................................................................................................AACAACGA---CAACAACAGCA.....................................................................................................................................................................................19190.05100010
dp5
CCC------C------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA--------------------------------------AGCAAC---ACTTGCTGTTGCAGCAGCAGC---------AACAAGC---AGCAACAGCAGCAA---CAA--GCAGCAG---------CAGCAGC---A-GCAA-------------------C----------------AAGCCAAA------------------------------------------------A-----------GCAAACCCAAATCCAAA------------------------------TCCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................CAA---CAA--GCAGCAG---------CAGCAGC---.................................................................................................................................................................2050.2010100000000
..................................................................................................................................................................................................................................................................................AA---CAA--GCAGCAG---------CAGCAGC---.................................................................................................................................................................19120.0810100000000
.......................................................................................................................................................................................................................................................................................CAA--GCAGCAG---------CAGCAGC---A-G..............................................................................................................................................................19200.0510100000000
droPer2
TGTCTTGTAC----------------------------------------------------------------------------------A------------------------------------------------------------------GTCCCCTC----CGCAAGCATTA--------------------------ACAACAACA---------------------ACAGC---------AACATAA---AACAACAACAGCAACTACAACAACAACAG---------CAACTACAACA-ATAA---------------------------------------CAACA------------------------------------------------------------ACAATAAC-------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
GCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGCAGCA---------------------GCAGCAGAAACAGCAGC-AAC---AGCAACAGCAGCAA---CAGCAACAGCAG---------CAACAAC---C-ACAACAAC--------------------AACAAGTA----------CT-------------------------------------------ACTAAAGC------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................AGCAG---------CAACAAC---C-ACAACAAC--------------------...................................................................................................................................2120.501010000
.....................................................................................................................................................................................................................................................AAACAGCAGC-AAC---AGCAAC...........................................................................................................................................................................................................1970.141010000
...............................................................................................................................................................................................................................................................................AGCAA---CAGCAACAGCAG---------CAAC.......................................................................................................................................................................21200.102020000
............................................................................................................................................................................................................................................................AGC-AAC---AGCAACAGCAGCAA---C...............................................................................................................................................................................................21200.102020000
..........................................................................................................................................................................................................................................................................ACAGCAGCAA---CAGCAACAGC......................................................................................................................................................................................20200.051010000
............................................................................................................................................................................................................................................................AGC-AAC---AGCAACAGCAGC.....................................................................................................................................................................................................18200.051010000
..................................................................................................................................................................................................................................................................................AA---CAGCAACAGCAG---------CAACA......................................................................................................................................................................19200.051000001
...................................................................................................................................................................................................................................................................................A---CAGCAACAGCAG---------CAACAAC---.................................................................................................................................................................20200.051010000
droBip1
TGA------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCTCTC----CA-----------------------------------GCAGCAGCAGCAACAACAGCA---------ACAGC---------AGC-AGC---AACAACAGCAGCAA---CAACAAC---AG---------CAACAGCAGCA-ACAA---------------------------------------CAGCA------------------------------------------------------------GCAACAAC-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATAACA---------------------ACAGC---------AACAAAC---GACAACAACAGCAA---CAACAATATCAA---------CAACAAC---C-G-----------------------------------------TCA-AC-------------------------------------------ACGAACACTCACTCTCA-------C---------------------ACT-------CCAAATGCTCTGSizeHit CountTotal NormTotal
No Reads
droFic1
TCG------C----------------------------------------------------------------------------------GA---------------------------CGTT-----CGTGTTGT-------TGTGTTGTTTATGG--------CA---ACAACTACAC-----------------------------GTAGCAAC---ACCCACG---------GCAGC---------AGA-AGC---AGCAACAGCAACAA---CAGCAAC---AGCAACAACAGC-------------------------------------------------------AACA------------------------------------------------------------GCAGCAGCA------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TCC------GCGAATGGGACAAGCCGTCGGAGGTCCTCCGCTGGACATGGAAAATGGTTGGTCCCCCT----CTA-A----ACACAAAACACAC---------------A------------CTCTACTCCGTATTGTATCCAAT--------------C-------CATC-------------------------------------------------------------------------------------------CACCAAAAAAAAAA---AAAAAACAACCG---------CTACTACCACCAACCA-------------------C----------------T---TGCC------------------------------------------------------------AAAAACAC---------------------GTG-------TCTACTGTCTTTSizeHit CountTotal NormTotal
No Reads
droRho1
TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCA--------------------------GTAGCAGCA---------------------GCAGC---AGC---AGGCAGC---AATAGCAGCAGCAG---CAGCAGCAGTAG---------CAACAGCAGCA-GC--------------------------------------AGGCAGCAGTATCAGCCATCACCATCA------------------------ACCAACACCGCCGCAGG-------C---------------------AGT-------TAGGTTATTTTTSizeHit CountTotal NormTotal
No Reads
droBia1
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAA---CAACA------------ACAGC---------AG----C---AGCAGCAACAACAA---CAGCAGCAACAA---------CTGCTGCAGCG-GCAA---C--------------------AGCAGCAGCAGCAGGCG-AA-------------------------------------------GCAAAA------------------AATATTGCAT----CTTCTCAAGCA-------TTTAATCTTCTTSizeHit CountTotal NormTotal
No Reads
droTak1
CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCACAGTA---------------------ATAGC---------AACAG-CAGCAGCAGCAGCAACGG---CAACAACAACAG---------CTACGGC---T-ACAA-------------------A----------------AAGCTACA------------------------------------------------------------GCAAGAACATATTACAA----------------------TATATTTTATTTSizeHit CountTotal NormTotal
No Reads
droEug1
TCC------GAGAATGGGACAAGCCGTTGGTGGTCCTCCGCTGGATATGGAAAATGGTTGGTCTCTCT----TTC-AGCAAA-------CACACACAC-ACACACAATCA------------CTCTACTCCGTATTGTATC--------------------------CATCCACCAAAAACC---------------------------------------------------------------------------------------------------------ACCG---------CCACTACCACA---------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
dm3
CAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCAATTGAT--------------------------GCAGCAAC---ATCAACA---------TCAGC---------AGC-AAC---AGCAACAGCAGCAA---CAGCAAC---AA---------CAGCAGCAG----------C--------------------ACAAC----------CAACA------------------------------------------------------------GCAGCAACATGCTCAGGAGCA--------ATT-------AAGTTTGCATCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................AC---ATCAACA---------TCAGC---------AGC-A......................................................................................................................................................................................................................1850.8040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................C---ATCAACA---------TCAGC---------AGC-AAC---AG...............................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................GCAG----------C--------------------ACAAC----------CAACA------------------------------------------------------------GCAGCA.............................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................C---ATCAACA---------TCAGC---------AGC-AAC---AGC..............................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................ATCAACA---------TCAGC---------AGC-AAC---AGC..............................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................CAACAGCAGCAA---CAGCAAC---AA---------...........................................................................................................................................................................21110.3640000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................CAACA---------TCAGC---------AGC-AAC---AGCAACAGCAG......................................................................................................................................................................................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TCAGC---------AGC-AAC---AGCAACAGCAGCAA---C...............................................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................ATCAACA---------TCAGC---------AGC-AAC---.................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AGCAAC---AA---------CAGCAGCAG----------C--------------------A..................................................................................................................................19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CAA---CAGCAAC---AA---------CAGCAGCAG----------C--------------------...................................................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
................................................................................................................................................................................................................................CAACA---------TCAGC---------AGC-AAC---AGCAACAG.........................................................................................................................................................................................................2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................CAACAGCAGCAA---CAGCAA..........................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................AA---CAGCAAC---AA---------CAGCAGCAG----------C--------------------...................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
.........................................................................................................................................................................................................................................................................AACAGCAGCAA---CAGCAAC---A.....................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................ACAGCAGCAA---CAGCAAC---A.....................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................C---ATCAACA---------TCAGC---------AGC-A......................................................................................................................................................................................................................1770.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................AACA---------TCAGC---------AGC-AAC---AGCAAC...........................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................CAACA---------TCAGC---------AGC-AAC---AGCAAC...........................................................................................................................................................................................................2290.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AGCAA---CAGCAAC---AA---------CAGCAGCAG----------C--------------------...................................................................................................................................24180.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000
................................................................................................................................................................................................................................................................................GCAA---CAGCAAC---AA---------CAGCAGC....................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CAGCAAC---AA---------CAGCAGCAG----------C--------------------...................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................AGC-AAC---AGCAACAGCAGC.....................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................GCAGCAA---CAGCAAC---AA---------CA.........................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................CA---------TCAGC---------AGC-AAC---AGCAACAGC........................................................................................................................................................................................................22110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................GCAGCAA---CAGCAAC---AA---------CAGCAGCA...................................................................................................................................................................24120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AA---------CAGCAGCAG----------C--------------------ACAAC----------G...................................................................................................................18130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................GCAGCAA---CAGCAAC---AA---------CAGCAGC....................................................................................................................................................................23130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GCAAC---AA---------CAGCAGCAG----------C--------------------AC.................................................................................................................................19140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................CAGCAA---CAGCAAC---AA---------CAGCAGCAG----------........................................................................................................................................................24160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................AAC---AGCAACAGCAGCAA---CAGC............................................................................................................................................................................................21180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AGC---------AGC-AAC---AGCAACAGCAGCAA---CA..............................................................................................................................................................................................25180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................AGCAACAGCAGCAA---CAGCAAC---......................................................................................................................................................................................21190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................AGCAA---CAGCAAC---AA---------CAGCA......................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................C-AAC---AGCAACAGCAGCAA---C...............................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................CAGC---------AGC-AAC---AGCAACAGCAG......................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................AAC---AGCAACAGCAGCAA---CAG.............................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................C---AGCAACAGCAGCAA---CAGCA...........................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................GCAA---CAGCAAC---AA---------CAGCAGCAG----------C--------------------...................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................AA---CAGCAAC---AA---------CAGCAGCA...................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CAA---CAGCAAC---AA---------CAGCAGC....................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................CAGCAGCAA---CAGCAAC---AA---------CA.........................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................AGCAGCAA---CAGCAAC---AA---------CAGCA......................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................AA---CAGCAAC---AA---------CAGCAGCAG----------........................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................CAA---CAGCAAC---AA---------CAGCAGCAG----------C--------------------A..................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................CAGC---------AGC-AAC---AGCAACAGCA.......................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................C---AGCAACAGCAGCAA---CAGC............................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................AGCAGCAA---CAGCAAC---AA---------CA.........................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GC---------AGC-AAC---AGCAACAGCAGC.....................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................AACAGCAGCAA---CAGCAAC---......................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................CAGC---------AGC-AAC---AGCAACAGCAGCA....................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAA---CA---------------ACAAC---------AACGGAC---AGCAGCAACAACAA---CAACAACAACAA---------CTGCAGT---T-GCAGCAAC--------------------ATTACGAA----------TT-------------------------------------------ACGATAATAATTTC----------C---------------------ATT-------TCTAATTTCCTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................AC---AGCAGCAACAACAA---CAACAACAAC......................................................................................................................................................................................2640.25100000010000000000
..............................................................................................................................................................................................................................................................................CAACAA---CAACAACAACA.....................................................................................................................................................................................17200.05100000001000000000
droSec2
CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCA---------------------ATAAC---------AACGGAC---AGCAACAACAAGAA---CAACAACAACAA---------CTGCAGT---T-GCAGCAAC--------------------ATTACGAA----------TT-------------------------------------------ACGATAATAATTTC----------C---------------------ATT-------TCTAATTTCCTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTA------A----------------------------------------------------------------------------------AC---------------------------CACC----------------------------------------AC----CATCACCACC-------A-----------------CCACCACAACA---------------------ACAAC---------AAAGAAC---AACAACAACAGCAG---CAGCAACATCAG---------CCACTACAACA-ACAA---CAAGAGGAGCAGCAGC-----AACACAGC----------AA-------------------------------------------GCGTTAACG---------------A---------------------GTA-------CTTATTGGTATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................CAGC----------AA-------------------------------------------GCGTTAACG---------------A---------------------GTA-------CTTATTGGT...2820.50100000010000
.....................................................................................................................................................................................................................................................................................................................................................ACACAGC----------AA-------------------------------------------GCGTTAACG---------------A---------------------GT....................2120.50100000010000
................................................................................................................................................................................................................................................................AAC---AACAACAACAGCAG---CAGCAAC.........................................................................................................................................................................................24200.05100000010000
droEre2
CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCACAGTA---------------------ATAGC---------AACAG-CAGCAGCAACGGCAACAA---CAACAGCAACAG---------CTACGGC---T-ACAA-------------------C----------------AAGCTACA------------------------------------------------------------GCAAGAACATATTACAA----------------------TATATTTTATTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................AA---CAACAGCAACAG---------CTACGGC---T-ACT............................................................................................................................................................25111.001100000011
.......................................................................................................................................................................................................................................................................................CAACAGCAACAG---------CTACGGC---T-A..............................................................................................................................................................2116.0060000006
...............................................................................................................................................................................................................................................................................................................................................C----------------AAGCTACA------------------------------------------------------------GCAAGAACAT.........................................1912.0020000020
..................................................................................................................................................................................................................................................................................................................C---T-ACAA-------------------C----------------AAGCTACA------------------------------------------------------------GCAAGAAC...........................................2312.0020100010
..................................................................................................................................................................................................................CACAGTA---------------------ATAGC---------AACAG-CA...................................................................................................................................................................................................................1912.0020000020
..............................................................................................................................................................................................................................................ATAGC---------AACAG-CAGCAGCAACGGCAAC.....................................................................................................................................................................................................2612.0020100010
.............................................................................................................................................................................................................................................................................................CAACAG---------CTACGGC---T-ACAA-------------------C----------------AAGC...................................................................................................................2312.0020200000
................................................................................................................................................................................................................................................................................................................GGC---T-ACAA-------------------C----------------AAGCTACA------------------------------------------------------------GCAAGAACAT.........................................2711.0011000000
........................................................................................................................................................................................................................................................................................................................ACAA-------------------C----------------AAGCTACA------------------------------------------------------------GCAAGAACATA........................................2411.0010000010
.............................................................................................................................................................................................................................................................................................CAACAG---------CTACGGC---T-ACAA-------------------C----------------AAGCTACA------------------------------------------------------------...................................................2711.0010000010
..............................................................................................................................................................................................................................................................................................AACAG---------CTACGGC---T-ACAA-------------------C----------------AAGCTACA------------------------------------------------------------...................................................2611.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAACATATTACAA----------------------TAT.........2011.0011000000
CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCACAGTA---------------------ATAGC---------AACAG-A....................................................................................................................................................................................................................2211.0010100000
....................................................................................................................................................................................................................CAGTA---------------------ATAGC---------AACAG-CAGC.................................................................................................................................................................................................................1911.0010000010
..........................................................................................................................................................................................................................................................................................................................AA-------------------C----------------AAGCTACA------------------------------------------------------------GCAAGAACAT.........................................2111.0010001000
...............................................................................................................................................................................................................................................................................AACAA---CAACAGCAACAG---------CTACGGC---T-...............................................................................................................................................................2511.0010001000
....................................................................................................................................................................................................................CAGTA---------------------ATAGC---------AACAG-CAGCAGCAAC...........................................................................................................................................................................................................2511.0010000010
............................................................................................................................................................................................................................................................AACAG-CAGCAGCAACGGCAACAA---CAAC............................................................................................................................................................................................2711.0010100000
...........................................................................................................................................................................................................................................................................CGGCAACAA---CAACAGCAACAG---------CT.........................................................................................................................................................................2311.0010000010
...................................................................................................................................................................................................................ACAGTA---------------------ATAGC---------AACAG-CAGCAGC..............................................................................................................................................................................................................2311.0010100000
..............................................................................................................................................................................................................................................ATAGC---------AACAG-CAGCAGCAACGGC........................................................................................................................................................................................................2311.0011000000
..............................................................................................................................................................................................................................................................................................................ACGGC---T-ACAA-------------------C----------------AAGCTACA------------------------------------------------------------GCAAGAACA..........................................2811.0011000000
.A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCACAGTA---------------------ATAGC---------AACAG-CAGC.................................................................................................................................................................................................................2411.0010001000
.............................................................................................................................................................................................................................................................ACAG-CAGCAGCAACGGCAAC.....................................................................................................................................................................................................2011.0010000010
...............................................................................................................................................................................................................................................................................AACAA---CAACAGCAACAG---------CTACGGC---.................................................................................................................................................................2411.0010100000
...............................................................................................................................................................................................................................................................................AACAA---CAACAGCAACAG---------CTACGG.....................................................................................................................................................................2311.0011000000
................................................................................................................................................................................................................................................AGC---------AACAG-CAGCAGCAACGGCAACAA---C...............................................................................................................................................................................................2711.0010100000
......................................................................................................................................................................................................................................................................................................................T-ACAA-------------------C----------------AAGCTACA------------------------------------------------------------GCAAGAACA..........................................2311.0011000000
............................................................................................................................................................................................................................................................................................GCAACAG---------CTACGGC---T-ACAA-------------------C----------------AA.....................................................................................................................2211.0011000000
.....................................................................................................................................................................................................................AGTA---------------------ATAGC---------AACAG-CAGCAGC..............................................................................................................................................................................................................2111.0010001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAACATATTACAA----------------------T...........1811.0010000010
.................................................................................................................................................................................................................................................................................CAA---CAACAGCAACAG---------CTACGGC---T-AC.............................................................................................................................................................2511.0010000010
..............................................................................................................................................................................................................................................ATAGC---------AACAG-CAGCAGCAACGG.........................................................................................................................................................................................................2211.0010000010
......................................................................................................................................................................................................................................................................................................................................................................CA------------------------------------------------------------GCAAGAACATATTACA...................................1811.0010000010
........................................................................................................................................................................................................................A---------------------ATAGC---------AACAG-CAGCAGCAACGGC........................................................................................................................................................................................................2411.0010010000
.............................................................................................................................................................................................................................................................................................................TACGGC---T-ACAA-------------------C----------------AAGCTACA------------------------------------------------------------GCAAGAAC...........................................2811.0010000010
......................................................................................................................................................................................................................GTA---------------------ATAGC---------AACAG-CAGCA................................................................................................................................................................................................................1820.5010000010
...................................................................................................................................................................................................................................................................AGCAGCAACGGCAACAA---CAACAG..........................................................................................................................................................................................2320.5010000010
...................................................................................................................................................................................................................................................................AGCAGCAACGGCAACAA---CAACAGC.........................................................................................................................................................................................2420.5010000010
..............................................................................................................................................................................................................................................ATAGC---------AACAG-CAGCAGCAAC...........................................................................................................................................................................................................2020.5010000010
...............................................................................................................................................................................................................................................................................AACAA---CAACAGCAACAG---------CTAC.......................................................................................................................................................................2120.5010000010
............................................................................................................................................................................................................................................................AACAG-CAGCAGCAACGGCA.......................................................................................................................................................................................................1930.3310001000
................................................................................................................................................................................................................................................................................ACAA---CAACAGCAACAG---------CTAC.......................................................................................................................................................................2030.3310100000
............................................................................................................................................................................................................................................................AACAG-CAGCAGCAACGGC........................................................................................................................................................................................................1860.3320000020
.....................................................................................................................................................................................................................................................................CAGCAACGGCAACAA---CAACAG..........................................................................................................................................................................................2130.3310000010
...............................................................................................................................................................................................................................................................................AACAA---CAACAGCAACAG---------CT.........................................................................................................................................................................1960.3320000020
........................................................................................................................................................................................................................................................................CAACGGCAACAA---CAACAGC.........................................................................................................................................................................................1950.2010000010
......................................................................................................................................................................................................................................................................AGCAACGGCAACAA---CAACA...........................................................................................................................................................................................1970.1410000010

Generated: 05/18/2015 at 01:45 AM