ID:

dmo_199

Coordinate:

scaffold_6308:1287576-1287636 -

Confidence:

confident

Class:

Canonical miRNA

Genomic Locale:

intron

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-38.1 -37.8 -37.4

Flybase annnotation

intron [Dmoj\GI10984-in]

No Repeatable elements found

Sense Strand Reads

AACTATTTCACTGTGATCCATAGCAAACTCAGCTTCTTGAGATCGATAATTCCATCTGGATCCCCTTACATAGTATTGTAATATTGTATATGTAATGGGATCTAGATGGAACTATAGACCTCCAGCAGCAGACCCTGTTATGGGAACATATATAGATCGTC

*************************************.(((.((.(((.(((((((((((((((.(((((((.(((.........)))))))))).))))))))))))))).))).)).)))...************************************
Read size # Mismatch Hit Count Total Norm Total V110

male body
M046

female body

M060

embryo

V056

head

V049

head

V041

embryo

........................................................................................TATGTAATGGGATCTAGATGGA................................................... 22 0 1 10.00 10 5 1 1 0 2 1
........................................................................................TATGTAATGGGATCTAGATGG.................................................... 21 0 1 9.00 9 3 2 3 1 0 0
........................................................................................TATGTAATGGGATCTAGATGGT................................................... 22 1 1 9.00 9 8 1 0 0 0 0
..................................................TCCATCTGGATCCCATTACATA......................................................................................... 22 1 2 4.00 8 4 2 2 0 0 0
....................................................CATCTGGATCCCCTTACATAGT....................................................................................... 22 0 1 4.00 4 1 1 2 0 0 0
..........................................................................................TGTAATGGGATCTAGATGGAAC................................................. 22 0 1 3.00 3 3 0 0 0 0 0
....................................................CATCTGGATCCCCTTACATAGTA...................................................................................... 23 0 1 2.00 2 0 2 0 0 0 0
........................................................................................TGTGTAATGGGATCTAGATGGC................................................... 22 2 1 1.00 1 0 0 1 0 0 0
....................................................CATCTGGATCCCCTTACATAG........................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................TGTAATGGGATCTAGATGGAACT................................................ 23 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................GGAACTATAGACCTCCAGCA.................................. 20 0 1 1.00 1 0 1 0 0 0 0
......................................................TCTGGATCCCCTTACATAGTA...................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
........................................................................................TATGTAATGGGATCTAGATGGC................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.....................................................ATCTGGATCCCCTTACATAGTA...................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................AATGGGATCTAGATGGAACT................................................ 20 0 1 1.00 1 1 0 0 0 0 0
..................................................TCCTTCTGGATCCCCTTACATA......................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
.......................................................................................ATATGTAATGGGATCTAGATGG.................................................... 22 0 1 1.00 1 0 0 0 1 0 0
..................................................TCCATCTGGATCCCATTACAT.......................................................................................... 21 1 2 1.00 2 1 1 0 0 0 0
.........................................................................................ATGTAATGGGATCTAGATGGA................................................... 21 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................AACTATGGACCTCCAGCAGCA............................... 21 1 1 1.00 1 0 1 0 0 0 0
........................................................................................TATGTAATGGGATCTAGATGGAA.................................................. 23 0 1 1.00 1 0 0 1 0 0 0
........................................................................................TATGTAATGGGATCTAGGTGGA................................................... 22 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................TGTAATGGGATCCAGATGGAAC................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TCCATCTGGATCCCCTTACATA......................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0
..........................................................................................TGTAATGGGATCCAGATGGAA.................................................. 21 1 2 0.50 1 1 0 0 0 0 0
..................................................TCCATCTGGATCCCATTACATC......................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
..........................................................................................TGTAAGGGGATCTAGATGGAA.................................................. 21 1 2 0.50 1 1 0 0 0 0 0
...........................................CGATATTTTCATCTCGATCC.................................................................................................. 20 3 15 0.07 1 0 0 0 0 0 1

Anti-sense strand reads

TTGATAAAGTGACACTAGGTATCGTTTGAGTCGAAGAACTCTAGCTATTAAGGTAGACCTAGGGGAATGTATCATAACATTATAACATATACATTACCCTAGATCTACCTTGATATCTGGAGGTCGTCGTCTGGGACAATACCCTTGTATATATCTAGCAG

************************************.(((.((.(((.(((((((((((((((.(((((((.(((.........)))))))))).))))))))))))))).))).)).)))...*************************************
Read size # Mismatch Hit Count Total Norm Total V110

male body
M046

female body

V056

head

V049

head

M060

embryo

V041

embryo

................................................TAAGGTAGACCTAGGGGAATGT........................................................................................... 22 0 1 5080.00 5080 5006 48 16 5 2 3
................................................TAAGGTAGGCCTAGGGGAATGT........................................................................................... 22 1 1 943.00 943 921 16 2 3 1 0
...............................................CTAAGGTAGACCTAGGGGAATGT........................................................................................... 23 1 1 407.00 407 401 6 0 0 0 0
...............................................TTAAGGTAGACCTAGGGGAATGT........................................................................................... 23 0 1 291.00 291 288 3 0 0 0 0
.................................................AAGGTAGACCTAGGGGAATGT........................................................................................... 21 0 1 284.00 284 277 4 2 1 0 0
................................................CAAGGTAGGCCTAGGGGAATGT........................................................................................... 22 2 1 178.00 178 174 1 2 1 0 0
...............................................CTAAGGTAGGCCTAGGGGAATGT........................................................................................... 23 2 1 165.00 165 165 0 0 0 0 0
................................................CAAGGTAGACCTAGGGGAATGT........................................................................................... 22 1 1 163.00 163 162 0 0 1 0 0
................................................TAAGGTAGACCTAGGGGAATG............................................................................................ 21 0 1 122.00 122 118 4 0 0 0 0
.................................................AAGGTAGGCCTAGGGGAATGT........................................................................................... 21 1 1 100.00 100 99 1 0 0 0 0
................................................TAAGGTAGGCCTAGGGGAATG............................................................................................ 21 1 1 70.00 70 66 4 0 0 0 0
................................................CAAGGTAGGCCTAGGGGAATG............................................................................................ 21 2 1 51.00 51 51 0 0 0 0 0
...............................................TTAAGGTAGGCCTAGGGGAATGT........................................................................................... 23 1 1 35.00 35 35 0 0 0 0 0
..................................................AGGTAGACCTAGGGGAATGT........................................................................................... 20 0 1 32.00 32 31 0 1 0 0 0
................................................TGAGGTAGACCTAGGGGAATGT........................................................................................... 22 1 1 31.00 31 31 0 0 0 0 0
...............................................CTAAGGTAGACCTAGGGGAATG............................................................................................ 22 1 1 30.00 30 29 1 0 0 0 0
...............................................CTAAGGTAGGCCTAGGGGAATG............................................................................................ 22 2 1 29.00 29 29 0 0 0 0 0
..............................................CTTAAGGTAGACCTAGGGGAATGT........................................................................................... 24 1 1 19.00 19 19 0 0 0 0 0
................................................TGAGGTAGGCCTAGGGGAATGT........................................................................................... 22 2 1 19.00 19 14 4 1 0 0 0
...............................................TTAAGGTAGACCTAGGGGAATG............................................................................................ 22 0 1 18.00 18 18 0 0 0 0 0
...............................................GTAAGGTAGACCTAGGGGAATGT........................................................................................... 23 1 1 15.00 15 14 1 0 0 0 0
................................................TAAGGTAGACCTAGGTGAATGT........................................................................................... 22 1 1 14.00 14 14 0 0 0 0 0
...............................................ATAAGGTAGACCTAGGGGAATGT........................................................................................... 23 1 1 13.00 13 13 0 0 0 0 0
..............................................CTTAAGGTAGGCCTAGGGGAATGT........................................................................................... 24 2 1 12.00 12 11 0 0 1 0 0
................................................TAAGGTAGACCTAGGGGGATGT........................................................................................... 22 1 1 12.00 12 11 1 0 0 0 0
................................................AAAGGTAGACCTAGGGGAATGT........................................................................................... 22 1 1 11.00 11 11 0 0 0 0 0
...............................................CTGAGGTAGACCTAGGGGAATGT........................................................................................... 23 2 1 11.00 11 11 0 0 0 0 0
................................................CAAGGTAGACCTAGGGGAATG............................................................................................ 21 1 1 9.00 9 9 0 0 0 0 0
..............................................CTTAAGGTAGACCTAGGGGAAT............................................................................................. 22 1 1 8.00 8 8 0 0 0 0 0
...................................................GGTAGACCTAGGGGAATGT........................................................................................... 19 0 1 8.00 8 8 0 0 0 0 0
...............................................GTAAGGTAGGCCTAGGGGAATGT........................................................................................... 23 2 1 8.00 8 8 0 0 0 0 0
................................................TAAGGTAGACCTAGGGTAATGT........................................................................................... 22 1 1 7.00 7 7 0 0 0 0 0
..............................................TTTAAGGTAGACCTAGGGGAATGT........................................................................................... 24 1 1 7.00 7 7 0 0 0 0 0
................................................TAAGGTAGACCTAGTGGAATGT........................................................................................... 22 1 1 7.00 7 6 0 0 0 1 0
................................................TAAGGTAGGCCTAGGGGGATGT........................................................................................... 22 2 1 7.00 7 7 0 0 0 0 0
..............................................TTTAAGGTAGACCTAGGGGAAT............................................................................................. 22 1 1 7.00 7 7 0 0 0 0 0
................................................TAAGTTAGACCTAGGGGAATGT........................................................................................... 22 1 1 7.00 7 7 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGAATAT........................................................................................... 22 1 1 6.00 6 6 0 0 0 0 0
.................................................GAGGTAGACCTAGGGGAATGT........................................................................................... 21 1 1 6.00 6 6 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGAATT............................................................................................ 21 1 1 6.00 6 6 0 0 0 0 0
................................................TAAGGTAGACCCAGGGGAATGT........................................................................................... 22 1 1 6.00 6 6 0 0 0 0 0
................................................TAGGGTAGGCCTAGGGGAATGT........................................................................................... 22 2 1 6.00 6 6 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGAATTT........................................................................................... 22 1 1 6.00 6 5 0 0 0 1 0
................................................TAAGGTAGACCTAGGGGAACGT........................................................................................... 22 1 1 5.00 5 5 0 0 0 0 0
...............................................ATAAGGTAGGCCTAGGGGAATGT........................................................................................... 23 2 1 5.00 5 5 0 0 0 0 0
....................................................GTAGGCCTAGGGGAATGT........................................................................................... 18 1 1 5.00 5 5 0 0 0 0 0
...............................................ATAAGGTAGGCCTAGGGGAATG............................................................................................ 22 2 1 5.00 5 4 0 0 1 0 0
.................................................GAGGTAGGCCTAGGGGAATGT........................................................................................... 21 2 1 5.00 5 5 0 0 0 0 0
................................................TAATGTAGACCTAGGGGAATGT........................................................................................... 22 1 1 5.00 5 5 0 0 0 0 0
.................................................AAGGTAGGCCTAGGGGAATG............................................................................................ 20 1 1 5.00 5 5 0 0 0 0 0
................................................TAAGGTAGACCTGGGGGAATGT........................................................................................... 22 1 1 5.00 5 5 0 0 0 0 0
.................................................AAGGTAGACCTAGGGGAATG............................................................................................ 20 0 1 5.00 5 5 0 0 0 0 0
................................................TTAGGTAGACCTAGGGGAATGT........................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0
........................................................................................ATACATTACCCTAGGTCTACCT................................................... 22 1 2 4.00 8 4 2 0 0 2 0
..............................................GTTAAGGTAGACCTAGGGGAATGT........................................................................................... 24 1 1 4.00 4 4 0 0 0 0 0
................................................TAAGGTGGACCTAGGGGAATGT........................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0
................................................TAAGGTAGACCTATGGGAATGT........................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0
................................................TAAGGTAGGCCTAGGGTAATGT........................................................................................... 22 2 1 4.00 4 4 0 0 0 0 0
...............................................TTAAGGTAGGCCTAGGGGAATG............................................................................................ 22 1 1 4.00 4 4 0 0 0 0 0
.................................................TAAGTAGACCTAGGGGAATGT........................................................................................... 21 2 1 4.00 4 4 0 0 0 0 0
................................................TAAAGTAGACCTAGGGGAATGT........................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0
................................................GAAGGTAGACCTAGGGGAATGT........................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0
...............................................ATAAGGTAGACCTAGGGGAATG............................................................................................ 22 1 1 3.00 3 3 0 0 0 0 0
................................................TAAGGTAGACCTACGGGAATGT........................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0
...............................................TAAAGGTAGACCTAGGGGAATGT........................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
................................................AAAGGTAGGCCTAGGGGAATGT........................................................................................... 22 2 1 3.00 3 3 0 0 0 0 0
................................................TAAAGTAGGCCTAGGGGAATGT........................................................................................... 22 2 1 3.00 3 3 0 0 0 0 0
................................................TAGGGTAGACCTAGGGGAATGT........................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0
................................................TAAGGTAGTCCTAGGGGAATGT........................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0
..............................................TATAAGGTAGACCTAGGGGAATGT........................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0
................................................TAATGTAGGCCTAGGGGAATGT........................................................................................... 22 2 1 3.00 3 3 0 0 0 0 0
...................................................GGTAGGCCTAGGGGAATGT........................................................................................... 19 1 1 3.00 3 3 0 0 0 0 0
...............................................GTAAGGTAGGCCTAGGGGAATG............................................................................................ 22 2 1 3.00 3 3 0 0 0 0 0
..............................................CTTAAGGTAGGCCTAGGGGAAT............................................................................................. 22 2 1 3.00 3 3 0 0 0 0 0
...............................................TTGAGGTAGACCTAGGGGAATGT........................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
...............................................CTGAGGTAGGCCTAGGGGAATGT........................................................................................... 23 3 1 3.00 3 3 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGAATCT........................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0
................................................TAAGGTAGGCCTAGGGGAATT............................................................................................ 21 2 1 3.00 3 3 0 0 0 0 0
................................................TATGGTAGACCTAGGGGAATGT........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTAGATCTAGGGGAATGT........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
................................................CGAGGTAGGCCTAGGGGAATGT........................................................................................... 22 3 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTAGGCCTAGGGGAATGA........................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0
................................................TACGGTAGACCTAGGGGAATGT........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGAATGTCTAG....................................................................................... 26 3 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTAGGCCTAGGGGAGTGT........................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0
................................................ATAGGTAGGCCTAGGGGAATGT........................................................................................... 22 3 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTAGGCCTCGGGGAATGT........................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGAAT............................................................................................. 20 0 1 2.00 2 1 0 0 0 0 1
................................................TAAGGTAGACCTAGGGGACTGT........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
.................................................AAGGTAGACCTAGGGGAAT............................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTAGACCTAGGAGAATGT........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTAGGACTAGGGGAATGT........................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGAATGTC.......................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..............................................ATTAAGGTAGACCTAGGGGAATGT........................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
.................................................AAGGTAGACCTAGGGGAATTT........................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTATACCTAGGGGAATGT........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...............................................TTAAGGTAGATCTAGGGGAATGT........................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTAGACATAGGGGAATGT........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
................................................TTAGGTAGGCCTAGGGGAATGT........................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0
.................................................CAGGTAGGCCTAGGGGAATGT........................................................................................... 21 2 1 2.00 2 2 0 0 0 0 0
...............................................CTAAGTTAGACCTAGGGGAATGT........................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTAGGCCTAGTGGAATGT........................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0
................................................TAAGATAGACCTAGGGGAATGT........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
........................................................................................CTACATTACCCTAGATCTACCT................................................... 22 1 1 2.00 2 1 1 0 0 0 0
................................................TAAGGTAGACCTAGGGGTATGT........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
.................................................AAGGTAGGCCTAGTGGAATGT........................................................................................... 21 2 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTAGGCCTAGGTGAATGT........................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGAATGC........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTAGGCCTAGGGGAATAT........................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...............................................CTAAGGTAGACCTAGGGGAACGT........................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTAGGCCTAGGAGAATGT........................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTAGAACTAGGGGAATGT........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
.................................................AAGGTAGACCTAGGGGAACGT........................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
...............................................GTAAGGTAGACCTAGGGGAATG............................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0
................................................TAAGGTATGCCTAGGGGAATGT........................................................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...............................................CTAAGGTAGACCTAGGTGAATGT........................................................................................... 23 2 2 1.50 3 3 0 0 0 0 0
................................................CAAGGTAGACCTAGGTGAATGT........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGA............................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
..............................................CGTAAGGTAGGCCTAGGGGAAT............................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0
.................................................AATGTAGACCTAGGGGAATGT........................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...............................................TTAAGGTAGACCTAGGGGAAT............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..................................................AGGTAGGCCTAGGGGAATGT........................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...............................................CTAAGGTGGACCTAGGGGAATGT........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...............................................CTAAGGTATACCTAGGGGAATGT........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...............................................CTAAGGTAGACCCAGGGGAATGT........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGAGT............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
.................................................CTGGTAGACCTAGGGGAATGT........................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...............................................TTAAGGTAGACCTATGGGAATGT........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGCCCTAGGGGAATGT........................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
................................................TAAGGTAGACCTAGCGGAATGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................AGGTAGACCTAGGGCAATGT........................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGGCCTATGGGAATGT........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..............................................TTTAAGGTAGACCTAGGGGAATG............................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
...............................................GTAAGGTAGACCTAGGGGGATGT........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGGCCTAGGGGAA.............................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0
...............................................CTAAGGTAGACCTAGGGGAATAT........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...............................................CTAAGGCAGACCTAGGGGAATGT........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.............................................CTTTAAGGTAGACCTAGGGGAATGT........................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0
................................................TAGGGTAGACCTAGGTGAATGT........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.................................................AAGGTAGACTTAGGGGAATGT........................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
................................................CAAGTTAGGCCTAGGGGAATG............................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................TACATTACCCTAGGTCTACCT................................................... 21 1 2 1.00 2 1 1 0 0 0 0
...................................................CGTAGACCTAGGGGAATGT........................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACCAAGGGGAATGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGGCCCAGGGGAATGT........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
................................................TTAGGTAGGCCTATGGGAATGT........................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
................................................CAGGGTAGGCCTAGGGGAATGT........................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTTGTCCTAGGGGAATGT........................................................................................... 22 2 1 1.00 1 0 0 0 0 0 1
..............................................CTTAAGGTAGGCCTAGGGGAATG............................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0
...............................................CTAAGGTACACCTAGGGGAATGT........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGAAAGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................TAAGTTAGGCCTAGGGGAATGT........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGGCCTAGGGCAATGT........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGAATGTCT......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGGCCTAGGGGAATGG........................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0
................................................TAACGTAGACCTAGGGGAATGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................CTAAGGTAGGACTAGGGGAATGT........................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
..............................................TGTAAGGTAGACCTAGGGGAAT............................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGTTAGACCTAGGGTAATGT........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
................................................CAAGGTAGACCTAGGGGAA.............................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGTGT............................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0
...............................................CTAAGGTAGACTTAGGGGAATGT........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...............................................TTAATGTAGACCTAGTGGAATGT........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...............................................TTAAGGTAGATCTAGGGGAATG............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
.............................................CTTTAAGGTAGGCCTAGGGGAAT............................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..............................................CTAAAGGTAGACCTAGGGGAATGT........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGGCCTAGCGGAATGT........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGAAGGCCTAGGGGAATGT........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..............................................TTTAAGGTAGGCCTAGGGGAAT............................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0
................................................TTAGGTAGGCCTAGGGGGATGT........................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................TACATTACCCTAGATCTACCT................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..............................................ACTAAGGTAGACCTAGGGGAATGT........................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...............................................CTAAGTAAGACCTAGGGGAATGT........................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
...............................................CTAAGGTAGACCTAGGGGAATGTC.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACCTAGAGGAATGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..............................................TCTAAGGTAGACCTAGGGGAATGT........................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACCTAGGGTAATG............................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...............................................TTTAGGTAGACCTAGGGGAATGT........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.................................................AAGGTAGACCTAGGGGAAGGT........................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
................................................CAAGTTAGACCTAGGGGAATGT........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACCTATGGGAATG............................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGAAGGT........................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
................................................TAAGGTAGACCTAGGGGAATGTG.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
................................................CAAGGTATGCCTAGGGGAATG............................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0
...............................................CCAAGGTAGACCTAGGGGAATGT........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...............................................AAAAGGTAGACCTAGGGGAATGT........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGATGT............................................................................................ 21 3 2 1.00 2 1 0 0 0 0 1
.................................................AAGGTATACCTAGGGGAATGT........................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................GGTAGGCCTAGGGGAATG............................................................................................ 18 1 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGCAAGT........................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
...............................................CTAATGTAGACCTAGGGGAATGT........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
................................................GAAGGTAGGCCTAGGGGAATGT........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...............................................CTCAGGTAGACCTAGGGGAATGT........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................CGGTAGACCTAGGGGAATGT........................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACCTAGGGAAATGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................CAAGGTAGACCTAGCGGAATGT........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
................................................CAAGGGAGGCCTAGGGGAATG............................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTATACCTAGGGGAATG............................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACGTAGGGGAATGT........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
................................................TAAAGTAGACCTAGGGGAATG............................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...............................................CTAAGGTAGACCTAGGGGAATGC........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
................................................CAAGGTAGACCTAGGGGAAAG............................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0
...............................................TTAAGGTAAACCTAGGGGAATGT........................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
...............................................TTAAGGTAGACCTAGGGGAATCT........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...............................................CTAAGGTAGGCCTAGGGGAAAGT........................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
...............................................TTAGGGTAGGCCTAGGGGAATGT........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
................................................GAAGGTAGACCTAGGGGAAGGT........................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
...............................................ATGAGGTAGACCTAGGGGAATG............................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAAACCTAGGGGAATGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..............................................TCTAGGGTAGACCTAGGGGAATGT........................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0
...............................................AAAAGGTAGGCCTAGGGGAATGT........................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
................................................TAAGTTAGACCTATGGGAATGT........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
................................................TATGGTAGCCCTAGGGGAATGT........................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
................................................TAAGGTAGGCCTAGGGGAGTG............................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGAGTGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................AGGTAGACCTAGGGGAATG............................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGGCGTAGGGGAATGT........................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0
................................................TAAGCTAGACCTAGGGGAAGGT........................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0
...............................................TTAAGGTAGACCTAGGGAAATGT........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..............................................TACAAGGTAGACCTAGGGGAAT............................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGAATGTCC......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGCAGACCTAGGGGAATGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................CAAGGTAGGCCTAGGAGAATGT........................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.................................................AAGGTGGACCTAGGGGAATGT........................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
........................................................................................ATACATTACCCTAGATCTACCT................................................... 22 0 1 1.00 1 0 1 0 0 0 0
................................................TAAGGTAGACCTAGGAGAATG............................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
...............................................CTAAGTTAGGCCTAGGGGAATGT........................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
...............................................TTAAGGTAGACCCAGGGGAATGT........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...............................................CTAAGGTAGACCTAGGGAAATGT........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
................................................CAAGGTAGACCTAGGGGAATTT........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGGCCTAGGGCAATG............................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGAATGG........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................CAAGGTAGACCTGGGGGAATGT........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTACACCTAGGGGAATGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTAGACCTAGGGGAACTT........................................................................................... 22 2 1 1.00 1 0 0 0 0 1 0
....................................................GTAGACCTAGGGGAATGT........................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
...............................................TCAAGGTAGACCTAGGGGAATGT........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
................................................TGAGGTAGGCCTAGGGGAGTGT........................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
................................................TAAGGTGGGCCTAGGGGAATGT........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................ATGTAGACCTAGGGGAATGT........................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...............................................CTGAGGTAGGCCTAGGGGAATG............................................................................................ 22 3 2 0.50 1 1 0 0 0 0 0
........................................................................................CTACATTACCCTAGGTCTACCT................................................... 22 2 2 0.50 1 1 0 0 0 0 0
................................................CAAGGTGGGCCTAGGGGAATGT........................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
.................................................AAGGTAGACCTAGGGTAATGT........................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
................................................TGAGGTAGGCCTAGGGGAATG............................................................................................ 21 2 2 0.50 1 1 0 0 0 0 0
................................................CAAGGTAGACCTAGGGGAGTGT........................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
.................................................AAGGTAGATCTAGGGGAATGT........................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
....................................................TAAGACCTAGGGGAATGT........................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0
..........................................................................................................................GTTCTCGTCTCGGACAATAC................... 20 3 11 0.09 1 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droMoj3 scaffold_6308:1287526-1287686 - dmo_199 confident AACTATTTCACTGTGATCCATAGCAAACTCAGCTTCTTGAGATCGATAATTCCATCTGGATCCCCTTACATAGTATTGTAATATTGTATATGTAATGGGATCTAGATGGAACTATAGACCTCCAGCAGCAGACCCTGTTATGGGAACATATATAGATCGTC
droKik1 scf7180000302798:195250-195266 + --------------------------------------------------------------------------------------------------------------------------------------------TGGAAACACACACACAC----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droMoj3
AACTATTTCACTGTGATCCATAGCAAACTCAGCTTCTTGAGATCGATAATTCCATCTGGATCCCCTTACATAGTATTGTAATATTGTATATGTAATGGGATCTAGATGGAACTATAGACCTCCAGCAGCAGACCCTGTTATGGGAACATATATAGATCGTCSizeHit CountTotal NormTotalM046

Female-body
V041

Embryo
V049

Head
V056

Head
M060

Embryo
V110

Male-body
........................................................................................TATGTAATGGGATCTAGATGGA...................................................22110.0010112015
........................................................................................TATGTAATGGGATCTAGATGG....................................................2119.009200133
........................................................................................TATGTAATGGGATCTAGATGGT...................................................2219.009100008
....................................................CATCTGGATCCCCTTACATAGT.......................................................................................2214.004100021
..........................................................................................TGTAATGGGATCTAGATGGAAC.................................................2213.003000003
....................................................CATCTGGATCCCCTTACATAGTA......................................................................................2312.002200000
....................................................CATCTGGATCCCCTTACATAG........................................................................................2111.001100000
..........................................................................................TGTAATGGGATCTAGATGGAACT................................................2311.001000001
...........................................................................................................GGAACTATAGACCTCCAGCA..................................2011.001100000
......................................................TCTGGATCCCCTTACATAGTA......................................................................................2111.001100000
........................................................................................TATGTAATGGGATCTAGATGGC...................................................2211.001000001
.....................................................ATCTGGATCCCCTTACATAGTA......................................................................................2211.001100000
.............................................................................................AATGGGATCTAGATGGAACT................................................2011.001000001
.......................................................................................ATATGTAATGGGATCTAGATGG....................................................2211.001000100
.........................................................................................ATGTAATGGGATCTAGATGGA...................................................2111.001100000
........................................................................................TATGTAATGGGATCTAGATGGAA..................................................2311.001000010
..................................................TCCATCTGGATCCCCTTACATA.........................................................................................2211.001000010
droKik1
--------------------------------------------------------------------------------------------------------------------------------------------TGGAAACACACACACAC----SizeHit CountTotal NormTotal
No Reads

Generated: 10/20/2015 at 06:46 PM